BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2080 (PAB2080) DE:Hypothetical protein
         (395 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75155 hypothetical protein PAB2080 - Pyrococcus abyssi (st...   790  0.0

>pir||E75155 hypothetical protein PAB2080 - Pyrococcus abyssi (strain Orsay)
           >gi|5457834|emb|CAB49324.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 395
           
 Score =  790 bits (2018), Expect = 0.0
 Identities = 395/395 (100%), Positives = 395/395 (100%)

Query: 1   MKSLGERTMISELKLKLILDFKAGTLTGVSRESLKEEAKTLLLNKGLKVEETSIGFSQGI 60
           MKSLGERTMISELKLKLILDFKAGTLTGVSRESLKEEAKTLLLNKGLKVEETSIGFSQGI
Sbjct: 1   MKSLGERTMISELKLKLILDFKAGTLTGVSRESLKEEAKTLLLNKGLKVEETSIGFSQGI 60

Query: 61  RGLKGVEAFKVRVVNLEEPVKGVELKYSGKFRGYDEVFPYLKDSINQEYTLLRTDSLFYP 120
           RGLKGVEAFKVRVVNLEEPVKGVELKYSGKFRGYDEVFPYLKDSINQEYTLLRTDSLFYP
Sbjct: 61  RGLKGVEAFKVRVVNLEEPVKGVELKYSGKFRGYDEVFPYLKDSINQEYTLLRTDSLFYP 120

Query: 121 IPAEPSFESLVKSVVGSEFDAEIIIEGVPADLTVAFGGEIQGNLLRIEGTNRLDIAIAPF 180
           IPAEPSFESLVKSVVGSEFDAEIIIEGVPADLTVAFGGEIQGNLLRIEGTNRLDIAIAPF
Sbjct: 121 IPAEPSFESLVKSVVGSEFDAEIIIEGVPADLTVAFGGEIQGNLLRIEGTNRLDIAIAPF 180

Query: 181 KVIEEKPFRFFILRDEGIERTIELLKEAYEFYSSILGRKNLIYTVIETPENYGGQAGKGY 240
           KVIEEKPFRFFILRDEGIERTIELLKEAYEFYSSILGRKNLIYTVIETPENYGGQAGKGY
Sbjct: 181 KVIEEKPFRFFILRDEGIERTIELLKEAYEFYSSILGRKNLIYTVIETPENYGGQAGKGY 240

Query: 241 ILVSGSSLRSEVPTNIYHELAHLWTPRATPEAHLSRFFDEAFANYLTALAVREIHGEDEY 300
           ILVSGSSLRSEVPTNIYHELAHLWTPRATPEAHLSRFFDEAFANYLTALAVREIHGEDEY
Sbjct: 241 ILVSGSSLRSEVPTNIYHELAHLWTPRATPEAHLSRFFDEAFANYLTALAVREIHGEDEY 300

Query: 301 KKFMANLEWWYKDILKKNPEAKNLKVPEWGRKGLHLLSYSKGALILKELHDLMGDSFYDL 360
           KKFMANLEWWYKDILKKNPEAKNLKVPEWGRKGLHLLSYSKGALILKELHDLMGDSFYDL
Sbjct: 301 KKFMANLEWWYKDILKKNPEAKNLKVPEWGRKGLHLLSYSKGALILKELHDLMGDSFYDL 360

Query: 361 LKAIANADAIDFETFRKLAEGMSERNLQDFFERYF 395
           LKAIANADAIDFETFRKLAEGMSERNLQDFFERYF
Sbjct: 361 LKAIANADAIDFETFRKLAEGMSERNLQDFFERYF 395


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143717276
Number of Sequences: 2977
Number of extensions: 6269076
Number of successful extensions: 16236
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16235
Number of HSP's gapped (non-prelim): 1
length of query: 395
length of database: 189,106,746
effective HSP length: 57
effective length of query: 338
effective length of database: 154,992,987
effective search space: 52387629606
effective search space used: 52387629606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)