BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2081 (PAB2081) DE:ACETYL TRANSFERASE
(141 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75155 acetyl transferase PAB2081 - Pyrococcus abyssi (stra... 300 4e-81
emb|CAC12503.1| (AL445067) conserved hypothetical protein [Therm... 130 7e-30
pir||E72312 conserved hypothetical protein - Thermotoga maritima... 82 4e-15
dbj|BAB05019.1| (AP001511) unknown conserved protein [Bacillus h... 77 1e-13
dbj|BAB05840.1| (AP001514) unknown conserved protein [Bacillus h... 70 1e-11
sp|P05332|YP20_BACLI HYPOTHETICAL P20 PROTEIN >gi|80106|pir||S00... 67 9e-11
>pir||D75155 acetyl transferase PAB2081 - Pyrococcus abyssi (strain Orsay)
>gi|5457833|emb|CAB49323.1| (AJ248284) ACETYL
TRANSFERASE [Pyrococcus abyssi]
Length = 141
Score = 300 bits (761), Expect = 4e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MVNNPMMIYFENDFDEILKELRKNREKMINFAVVENEKEELVGFCGIGDIDWRSRNAMVW 60
MVNNPMMIYFENDFDEILKELRKNREKMINFAVVENEKEELVGFCGIGDIDWRSRNAMVW
Sbjct: 1 MVNNPMMIYFENDFDEILKELRKNREKMINFAVVENEKEELVGFCGIGDIDWRSRNAMVW 60
Query: 61 YLIGKEHWGKGYGTETLALLCRFAFENMNLRKLYTHVYEPNRASIRVLEKNGFKLVGRLK 120
YLIGKEHWGKGYGTETLALLCRFAFENMNLRKLYTHVYEPNRASIRVLEKNGFKLVGRLK
Sbjct: 61 YLIGKEHWGKGYGTETLALLCRFAFENMNLRKLYTHVYEPNRASIRVLEKNGFKLVGRLK 120
Query: 121 KHVYLPDYGYVDELIYERFKD 141
KHVYLPDYGYVDELIYERFKD
Sbjct: 121 KHVYLPDYGYVDELIYERFKD 141
>emb|CAC12503.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 181
Score = 130 bits (324), Expect = 7e-30
Identities = 57/140 (40%), Positives = 96/140 (67%)
Query: 2 VNNPMMIYFENDFDEILKELRKNREKMINFAVVENEKEELVGFCGIGDIDWRSRNAMVWY 61
+ +P I+F D DE LRKN+EK +A++ + + +G G+ DID ++ A + +
Sbjct: 37 IRDPTQIFFPEDLDEFYDSLRKNKEKTRIYAILYGKAADFIGTIGLYDIDTKNSYAYIAF 96
Query: 62 LIGKEHWGKGYGTETLALLCRFAFENMNLRKLYTHVYEPNRASIRVLEKNGFKLVGRLKK 121
I +++WG+G T+ ++L+ ++AF+ M+LRKL + V+EPN AS +VLEKNGF+ VGR ++
Sbjct: 97 GIDQKYWGRGITTKAVSLMMKYAFDTMHLRKLISSVFEPNVASRKVLEKNGFEEVGRYRR 156
Query: 122 HVYLPDYGYVDELIYERFKD 141
Y+P YG+ DE+++ERF +
Sbjct: 157 QGYVPGYGFADEVLFERFNE 176
>pir||E72312 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981506|gb|AAD36047.1|AE001759_11 (AE001759)
conserved hypothetical protein [Thermotoga maritima]
Length = 182
Score = 81.5 bits (198), Expect = 4e-15
Identities = 36/95 (37%), Positives = 58/95 (60%)
Query: 30 NFAVVENEKEELVGFCGIGDIDWRSRNAMVWYLIGKEHWGKGYGTETLALLCRFAFENMN 89
+FA+ + E +G C I IDW++ A V +G+ +W +GYGT+ + +L RF F MN
Sbjct: 62 SFAIEKLSDGEYIGGCSINKIDWKNSVAEVGIFLGRPYWSQGYGTDAMRVLVRFIFNEMN 121
Query: 90 LRKLYTHVYEPNRASIRVLEKNGFKLVGRLKKHVY 124
+ K+ HV+ N + RV EK GFK+ G L++ ++
Sbjct: 122 MNKIKLHVFSFNERAKRVYEKIGFKVEGILRQELF 156
>dbj|BAB05019.1| (AP001511) unknown conserved protein [Bacillus halodurans]
Length = 180
Score = 76.9 bits (186), Expect = 1e-13
Identities = 32/94 (34%), Positives = 56/94 (59%)
Query: 26 EKMINFAVVENEKEELVGFCGIGDIDWRSRNAMVWYLIGKEHWGKGYGTETLALLCRFAF 85
+K + F ++E ++G CG +IDW +A + Y + + +WGKGYGTE + L +AF
Sbjct: 61 KKALRFTMIETGTNTVIGSCGYNEIDWEVGSAEIGYELDQSYWGKGYGTEAITALIHYAF 120
Query: 86 ENMNLRKLYTHVYEPNRASIRVLEKNGFKLVGRL 119
+++ L+++ V N SI++LEK F+ G +
Sbjct: 121 DHLQLKRMVAKVEPANVGSIKILEKLHFRDEGEV 154
>dbj|BAB05840.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 181
Score = 70.2 bits (169), Expect = 1e-11
Identities = 37/95 (38%), Positives = 57/95 (59%), Gaps = 1/95 (1%)
Query: 31 FAVVENEKEELVGFCGIGDIDWRSRNAMVWYLIG-KEHWGKGYGTETLALLCRFAFENMN 89
+ + E E + +G + +ID+++RNA IG K +WGKGYG E L LL +AF MN
Sbjct: 63 YMIHEKEMDVTIGITSLINIDYKNRNAECIIDIGEKTYWGKGYGFEALRLLLNYAFLEMN 122
Query: 90 LRKLYTHVYEPNRASIRVLEKNGFKLVGRLKKHVY 124
L ++ V+ N+ +IR+ EK GFK G ++ +Y
Sbjct: 123 LHRVSLRVFSFNKKAIRLYEKLGFKHEGTSRQCLY 157
>sp|P05332|YP20_BACLI HYPOTHETICAL P20 PROTEIN >gi|80106|pir||S00875 hypothetical protein
P20 - Bacillus licheniformis >gi|39573|emb|CAA30415.1|
(X07542) P20 (AA 1-178) [Bacillus licheniformis]
Length = 178
Score = 67.1 bits (161), Expect = 9e-11
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 31 FAVVENEKEELVGFCGIGDIDWRSRNAMVWYLIGKEHWGKGYGTETLALLCRFAFENMNL 90
F+++ E +E++G CG ID + A + Y +G+ HWGKG+ +E + L + F ++NL
Sbjct: 65 FSIIVKETDEVIGTCGFNMIDQENGRAEIGYDLGRNHWGKGFASEAVQKLIDYGFTSLNL 124
Query: 91 RKLYTHVYEPNRASIRVLEKNGFKLVGRLKKH 122
++ V N SI++L F+ G L+ +
Sbjct: 125 NRIEAKVEPENTPSIKLLNSLSFQKEGLLRDY 156
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.443
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57909541
Number of Sequences: 2977
Number of extensions: 2434588
Number of successful extensions: 5765
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5759
Number of HSP's gapped (non-prelim): 6
length of query: 141
length of database: 189,106,746
effective HSP length: 48
effective length of query: 93
effective length of database: 160,379,370
effective search space: 14915281410
effective search space used: 14915281410
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)