BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2084 (PAB2084) DE:ELECTRON TRANSPORT PROTEIN
(166 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75154 electron transport protein PAB2084 - Pyrococcus abys... 356 9e-98
pir||E71078 hypothetical protein PH0893 - Pyrococcus horikoshii ... 115 4e-25
sp|P30132|HYDN_ECOLI ELECTRON TRANSPORT PROTEIN HYDN >gi|7432696... 104 9e-22
sp|P56256|YSAA_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YSAA >g... 103 1e-21
gi|11498555 carbon monoxide dehydrogenase, iron sulfur subunit (... 100 1e-20
sp|Q46819|YGFS_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YGFS 98 5e-20
pir||F65072 hypothetical protein b2886 - Escherichia coli (strai... 98 5e-20
pir||A75061 formate dehydrogenase iron-sulfur chain related prot... 97 1e-19
dbj|BAA74792.1| (AB017192) nitrate reductase electron transfer s... 96 3e-19
gb|AAF91266.1|AF230199_8 (AF230199) pyruvate oxidoreductase cyst... 95 6e-19
sp|P31894|COOF_RHORU IRON-SULFUR PROTEIN >gi|282185|pir||B42957 ... 94 1e-18
pir||E72382 iron-sulfur cluster-binding protein - Thermotoga mar... 92 3e-18
gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD... 92 4e-18
sp|P32708|NRFC_ECOLI NRFC PROTEIN >gi|2144352|pir||C57987 nrfC p... 92 4e-18
dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number ... 92 4e-18
sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG p... 92 4e-18
pir||F70306 dimethylsulfoxide reductase chain B - Aquifex aeolic... 92 5e-18
gb|AAC43166.1| (U00006) matches PS00198: 4Fe-4S ferredoxins, iro... 91 8e-18
sp|P37601|PHSB_SALTY THIOSULFATE REDUCTASE ELECTRON TRANSPORT PR... 91 8e-18
gb|AAD00534.1| (U82372) putative molybdopterin oxidoreductase ir... 91 8e-18
gb|AAF91267.1|AF230199_9 (AF230199) pyruvate oxidoreductase cyst... 90 1e-17
pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jan... 89 3e-17
gb|AAB98252.1| (U67482) carbon monoxide dehydrogenase, iron sulf... 89 3e-17
sp|Q57712|Y264_METJA HYPOTHETICAL PROTEIN MJ0264 >gi|2127910|pir... 88 6e-17
pir||G65072 hypothetical protein b2887 - Escherichia coli (strai... 86 3e-16
sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS I... 86 3e-16
gi|11498801 molybdopterin oxidoreductase, iron-sulfur binding su... 85 4e-16
emb|CAB37414.1| (AJ224978) tetrathionate reductase subunit B (Tt... 85 5e-16
gb|AAG29808.1|AF249899_1 (AF249899) carbon monoxide dehydrogenas... 85 6e-16
pir||G64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain B1, a... 84 8e-16
pir||B64925 probable iron-sulfur protein b1674 - Escherichia col... 84 1e-15
pir||G64924 nrfC protein homolog b1671 - Escherichia coli >gi|15... 83 1e-15
pir||G72495 probable polysulfide reductase APE2605 - Aeropyrum p... 83 2e-15
pir||S03786 dimethylsulfoxide reductase (EC 1.8.-.-) chain B - E... 82 3e-15
sp|P18776|DMSB_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 82 3e-15
gi|11497774 molybdopterin oxidoreductase, iron-sulfur binding su... 82 3e-15
sp|P16428|HYCB_ECOLI FORMATE HYDROGENLYASE SUBUNIT 2 (FHL SUBUNI... 82 5e-15
pir||D69096 formate hydrogenlyase, iron-sulfur subunit 2 - Metha... 82 5e-15
pir||B69099 formate hydrogenlyase, iron-sulfur subunit 2 - Metha... 81 9e-15
pir||S08620 probable hydrogenase 3 protein 2 - Escherichia coli ... 80 2e-14
pir||C69099 formate hydrogenlyase, iron-sulfur subunit I - Metha... 80 2e-14
gb|AAD37318.1|AF135170_9 (AF135170) dimethyl sulfoxide reductase... 79 3e-14
gb|AAA68432.1| (L31538) iron-sulfur protein [Salmonella typhimur... 78 5e-14
sp|Q57619|FER8_METJA PUTATIVE FERREDOXIN MJ0155 >gi|2127909|pir|... 78 5e-14
pir||F83044 nitrate-inducible formate dehydrogenase, beta subuni... 77 1e-13
pir||B81298 formate dehydrogenase (EC 1.2.1.2) iron-sulfur chain... 77 1e-13
sp|P31076|PSRB_WOLSU POLYSULFIDE REDUCTASE CHAIN B (SULFUR REDUC... 76 2e-13
sp|P45015|NRFC_HAEIN NRFC PROTEIN HOMOLOG >gi|1074098|pir||A6418... 76 3e-13
sp|P27273|FDHB_WOLSU FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT >... 75 7e-13
sp|P24184|FDNH_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, I... 74 1e-12
sp|P32175|FDOH_ECOLI FORMATE DEHYDROGENASE-O, IRON-SULFUR SUBUNI... 74 1e-12
gb|AAB06234.1| (U26665) dimethyl sulphoxide reductase subunit B ... 73 2e-12
gi|11497792 molybdopterin oxidoreductase, iron-sulfur binding su... 73 2e-12
gi|11497696 iron-sulfur cluster binding protein [Archaeoglobus f... 73 2e-12
sp|P20925|YFRA_PROVU FRD OPERON PROBABLE IRON-SULFUR PROTEIN A >... 73 3e-12
sp|P23481|HYFA_ECOLI HYDROGENASE-4 COMPONENT A >gi|538761|pir||C... 72 4e-12
pir||H65023 hypothetical 22.2K protein (bcp 3'region) - Escheric... 72 4e-12
gb|AAK41790.1| Molybdopterin oxidoreductase, iron-sulfur binding... 72 4e-12
sp|P44450|FDXH_HAEIN FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT ... 71 6e-12
sp|P45003|DMSB_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 71 8e-12
gi|11499962 molybdopterin oxidoreductase, iron-sulfur binding su... 71 8e-12
gb|AAG23607.1|AF244658_1 (AF244658) carbon monoxide dehydrogenas... 71 8e-12
gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding... 68 5e-11
pir||D70406 DMSO reductase chain B - Aquifex aeolicus >gi|298367... 68 9e-11
>pir||H75154 electron transport protein PAB2084 - Pyrococcus abyssi (strain
Orsay) >gi|5457829|emb|CAB49319.1| (AJ248284) ELECTRON
TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 166
Score = 356 bits (904), Expect = 9e-98
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAP 60
MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAP
Sbjct: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAP 60
Query: 61 CMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGDPVC 120
CMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGDPVC
Sbjct: 61 CMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGDPVC 120
Query: 121 IAKCPTNALSLSNLSDIEPNGSGSREYEYALRLHKNLAREWGINVR 166
IAKCPTNALSLSNLSDIEPNGSGSREYEYALRLHKNLAREWGINVR
Sbjct: 121 IAKCPTNALSLSNLSDIEPNGSGSREYEYALRLHKNLAREWGINVR 166
>pir||E71078 hypothetical protein PH0893 - Pyrococcus horikoshii
>gi|3257304|dbj|BAA29987.1| (AP000004) 161aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 161
Score = 115 bits (284), Expect = 4e-25
Identities = 51/125 (40%), Positives = 68/125 (53%), Gaps = 2/125 (1%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACP 66
V+ +C GC CE+ CS SHEG+ + LSRI ++ G P++C QC+ APC CP
Sbjct: 17 VHEDKCIGCHTCEMVCSLSHEGIVNPDLSRIHVI--GYKGEKFPIMCLQCEDAPCELVCP 74
Query: 67 TGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGDPVCIAKCPT 126
AI E + +V ++C C C CP G V + CDLCGGDP C+ CP
Sbjct: 75 MEAIHMEGNIRIVDDDKCIRCKMCTLVCPIGGVLYDYINNKMIRCDLCGGDPQCVKYCPM 134
Query: 127 NALSL 131
NA+ L
Sbjct: 135 NAIEL 139
>sp|P30132|HYDN_ECOLI ELECTRON TRANSPORT PROTEIN HYDN >gi|7432696|pir||E65051 4Fe-4S
iron-sulfur protein - Escherichia coli (strain K-12)
>gi|216575|dbj|BAA03314.1| (D14422) 4Fe-4S iron-sulfer
protein, putative [Escherichia coli]
>gi|882606|gb|AAA69223.1| (U29579) 4Fe-4S iron-sulfur
protein [Escherichia coli] >gi|1789067|gb|AAC75755.1|
(AE000355) involved in electron transport from formate
to hydrogen, Fe-S centers [Escherichia coli K12]
Length = 175
Score = 104 bits (256), Expect = 9e-22
Identities = 60/159 (37%), Positives = 82/159 (50%), Gaps = 27/159 (16%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHE---GVFSLS----LSRITIVKDDLLGMDVPVVCRQCD 57
I + S+C GCR CE+ C SH+ SL+ L RI ++K + + VCRQC+
Sbjct: 5 IIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIHVIKG--VNISTATVCRQCE 62
Query: 58 PAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKV---------- 107
APC CP GAI R+ G + V E C GC CV ACP+GA+++ VR +
Sbjct: 63 DAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVR 122
Query: 108 -----ALICDLCG---GDPVCIAKCPTNALSLSNLSDIE 138
A CDLC P C+A CPT+AL + + +E
Sbjct: 123 ADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKLE 161
>sp|P56256|YSAA_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YSAA >gi|7432697|pir||G65156
hypothetical 17.5 kD protein in avtA-selB intergenic
region - Escherichia coli (strain K-12)
>gi|2367245|gb|AAC76597.1| (AE000435) orf, hypothetical
protein [Escherichia coli K12]
Length = 157
Score = 103 bits (255), Expect = 1e-21
Identities = 55/146 (37%), Positives = 78/146 (52%), Gaps = 14/146 (9%)
Query: 5 IEVNVSRCAGCRYCELWCSYSH---EGVFSLS----LSRITIVKDDLLGMDVPVVCRQCD 57
I + ++C GCR CE+ C+ SH + +LS +SRI ++KD V C QC+
Sbjct: 5 IIADATKCIGCRTCEVACAVSHHENQDCAALSPDEFISRIRVIKDHC--WTTAVACHQCE 62
Query: 58 PAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKV--ALICDLC- 114
APC CP AI RE+G + V C GC C+ ACPFGA+++ K A+ CDLC
Sbjct: 63 DAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAMEVVSSRKKARAIKCDLCW 122
Query: 115 --GGDPVCIAKCPTNALSLSNLSDIE 138
P C+ CPT AL ++ ++
Sbjct: 123 HRETGPACVEACPTKALQCMDVEKVQ 148
>gi|11498555 carbon monoxide dehydrogenase, iron sulfur subunit (cooF)
[Archaeoglobus fulgidus] >gi|7432706|pir||F69368 carbon
monoxide dehydrogenase, iron sulfur subunit (cooF)
homolog - Archaeoglobus fulgidus
>gi|2649645|gb|AAB90290.1| (AE001038) carbon monoxide
dehydrogenase, iron sulfur subunit (cooF) [Archaeoglobus
fulgidus]
Length = 157
Score = 100 bits (247), Expect = 1e-20
Identities = 47/141 (33%), Positives = 75/141 (52%), Gaps = 11/141 (7%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHEG--------VFSLSLSRITIVKDDLLGMDVPVVC 53
R+RI C GC CE+WCS +H ++ + I+ ++ L + C
Sbjct: 9 RIRIVSKPEVCIGCHLCEVWCSVAHSKSKDIIKAFLYEQPRPQPRILVEEDLPETYALQC 68
Query: 54 RQCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICD 112
R C+ C+ AC GA+ K ++G+++ +C C C+ ACP+GA+++++ TK L CD
Sbjct: 69 RHCEEPKCVAACIAGALYKDDDGIVIHDESKCVACYSCIMACPYGAIRINIETKKPLKCD 128
Query: 113 LCGG--DPVCIAKCPTNALSL 131
LC G P C+ CP NAL +
Sbjct: 129 LCKGLDYPYCVKYCPNNALEI 149
>sp|Q46819|YGFS_ECOLI PUTATIVE ELECTRON TRANSPORT PROTEIN YGFS
Length = 162
Score = 98.3 bits (241), Expect = 5e-20
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 13/142 (9%)
Query: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLS----LSRITIVKDDLLGMDVPVVCRQC 56
M+ I VN + C GCR CE+ C +H L+ L R+ + + D + PV+C QC
Sbjct: 1 MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRLD--SISAPVMCHQC 58
Query: 57 DPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAV---KLHVRTKVALI-CD 112
+ APC+ ACP GA+ V+ ++ C GC CV ACPFG + L T+ ++ CD
Sbjct: 59 ENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCD 118
Query: 113 LC---GGDPVCIAKCPTNALSL 131
LC P C+ CPT AL L
Sbjct: 119 LCEQREEGPACVESCPTQALQL 140
>pir||F65072 hypothetical protein b2886 - Escherichia coli (strain K-12)
>gi|887836|gb|AAA83067.1| (U28375) ORF_f163 [Escherichia
coli] >gi|1789252|gb|AAC75924.1| (AE000372) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 163
Score = 98.3 bits (241), Expect = 5e-20
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 13/142 (9%)
Query: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLS----LSRITIVKDDLLGMDVPVVCRQC 56
M+ I VN + C GCR CE+ C +H L+ L R+ + + D + PV+C QC
Sbjct: 2 MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQRLD--SISAPVMCHQC 59
Query: 57 DPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAV---KLHVRTKVALI-CD 112
+ APC+ ACP GA+ V+ ++ C GC CV ACPFG + L T+ ++ CD
Sbjct: 60 ENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQIVKCD 119
Query: 113 LC---GGDPVCIAKCPTNALSL 131
LC P C+ CPT AL L
Sbjct: 120 LCEQREEGPACVESCPTQALQL 141
>pir||A75061 formate dehydrogenase iron-sulfur chain related protein PAB1390 -
Pyrococcus abyssi (strain Orsay)
>gi|5458895|emb|CAB50382.1| (AJ248287) FORMATE
DEHYDROGENASE IRON-SULFUR SUBUNIT related protein
[Pyrococcus abyssi]
Length = 164
Score = 96.7 bits (237), Expect = 1e-19
Identities = 51/144 (35%), Positives = 75/144 (51%), Gaps = 14/144 (9%)
Query: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAP 60
M +I ++ RC C+ CE+ C H +RI + + L +P CR C+ AP
Sbjct: 1 MSKKIFLDYRRCIACKACEVACEMEH------GEARIRVFEFPDL-TSIPFNCRHCERAP 53
Query: 61 CMEACPTGAIKRE-NGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC----- 114
C+E CPTGA+ R+ + + +C GC C ACPFG KL K+ CDLC
Sbjct: 54 CLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDEANKIMDKCDLCADRRA 113
Query: 115 -GGDPVCIAKCPTNALSLSNLSDI 137
G P C++ CPT+AL ++++I
Sbjct: 114 QGKLPACVSACPTDALKYGDINEI 137
>dbj|BAA74792.1| (AB017192) nitrate reductase electron transfer subunit [Clostridium
perfringens]
Length = 137
Score = 95.6 bits (234), Expect = 3e-19
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 4 RIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCME 63
RI++N +C GC C C SH+ + SRI I + G P+ CR CD C+
Sbjct: 3 RIKINRDKCVGCLTCTTACIVSHDS--EDTRSRIAITSE---GKYTPIFCRHCDRPECVY 57
Query: 64 ACPTGAIK--RENGVLVVSAEECTGCGECVRACPFGAVKL-HVRTKVALICDLCGG---- 116
C +GA+K +E G + C C CV ACP+G +K H K + CD+C
Sbjct: 58 TCMSGAMKKDKETGFVTYDKSRCASCFMCVMACPYGVLKAEHEMNKYIMKCDMCASTKEK 117
Query: 117 DPVCIAKCPTNALSLSNLSD 136
P C+AKCP A++L + +
Sbjct: 118 TPQCVAKCPMGAITLEEVEE 137
>gb|AAF91266.1|AF230199_8 (AF230199) pyruvate oxidoreductase cysteine-rich subunit 1
[Methanococcus maripaludis]
Length = 167
Score = 94.8 bits (232), Expect = 6e-19
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C C C CS HE +S I+I + + G +PVVC+ C +PCM+ CP AI+
Sbjct: 11 CDNCGDCVKSCSEVHE------VSGISIWEHE--GRYLPVVCQHCTSSPCMDVCPVSAIE 62
Query: 72 RENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGG--DPVCIAKCPTNAL 129
++GV+ + E C GCG C ACPFGA+ ++ K A CDLC G + C+ C L
Sbjct: 63 SKDGVIYLDKESCIGCGLCAMACPFGAI--YISGKTAHKCDLCFGRDEQACVKACSKRCL 120
Query: 130 SLSNLSDI 137
+ N+ ++
Sbjct: 121 EVVNVDEL 128
>sp|P31894|COOF_RHORU IRON-SULFUR PROTEIN >gi|282185|pir||B42957 iron-sulfur protein CooF
[similarity] - Rhodospirillum rubrum
>gi|1498747|gb|AAC45122.1| (U65510) iron sulfur protein
[Rhodospirillum rubrum]
Length = 190
Score = 94.0 bits (230), Expect = 1e-18
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 29/157 (18%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHEG--------VFSLSL-SRITIVKDDLLGMDVPVVCRQ 55
I N C C CEL C+ +H G +L L +R +V D G +P+ CRQ
Sbjct: 10 IYANPDHCLSCHSCELACAVAHSGGHDMIEAIAANLPLHARNKVVSVD--GTAMPMQCRQ 67
Query: 56 CDPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRT---------- 105
C+ APC ACPTGA ++ +G + + + C GC CV CPFGA+ + T
Sbjct: 68 CEDAPCTFACPTGACRQADGQVQIVEQHCIGCKLCVMVCPFGAITVRSETVVEQGACTNR 127
Query: 106 KVALICDLC--------GGDPVCIAKCPTNALSLSNL 134
VA CDLC P C+ CPT A+ + +L
Sbjct: 128 GVAKKCDLCVDWRASTGKTAPACVEACPTKAIRMVDL 164
>pir||E72382 iron-sulfur cluster-binding protein - Thermotoga maritima (strain
MSB8) >gi|4980900|gb|AAD35481.1|AE001719_7 (AE001719)
iron-sulfur cluster-binding protein [Thermotoga
maritima]
Length = 152
Score = 92.4 bits (226), Expect = 3e-18
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 4 RIEVNVSRCAGCRYCELWCSYSHEGVFSL--------SLSRITIVKDDLLGMDVPVVCRQ 55
RI + C GC+ CE+ C + G +L L ++ ++ + + CR
Sbjct: 7 RILIREEYCMGCKLCEINCVAAQVGTGNLIKVYRYVPELPEPNVIVEEHDYVTFALQCRN 66
Query: 56 CDPAPCMEACPTGAIKRE--NGVLVVSAEECTGCGECVRACPFGAVKLHVR-TKVALICD 112
CD C++AC TGA+ R+ G + V+ E+C GC CV ACPFG ++ + + KVA CD
Sbjct: 67 CDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEKKVASKCD 126
Query: 113 LCG--GDPVCIAKCPTNALSL 131
LC G P C+ CP AL L
Sbjct: 127 LCADRGTPGCVEGCPNEALVL 147
>gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD) protein
[Escherichia coli]
Length = 652
Score = 92.1 bits (225), Expect = 4e-18
Identities = 57/168 (33%), Positives = 82/168 (47%), Gaps = 22/168 (13%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHEGVFSLSLS-----RITIVKDDLLGMDVPVVCRQCDPA 59
I N +C GC CE+ C +H + RIT++K V C C+ A
Sbjct: 5 IMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQ--QRSAVTCHHCEDA 62
Query: 60 PCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVAL--------IC 111
PC +CP GAI + + V+ ++C GC CV ACPFG +++ V T VA C
Sbjct: 63 PCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQI-VLTPVAAGKVKATAHKC 121
Query: 112 DLCGG---DPVCIAKCPTNALSLSNLSDIEPNG-SGSREYEYALRLHK 155
DLC G P C+ CP +AL L ++D+ +G + SR A + H+
Sbjct: 122 DLCAGRENGPACVENCPADALQL--VTDVALSGMAKSRRLRTARQEHQ 167
>sp|P32708|NRFC_ECOLI NRFC PROTEIN >gi|2144352|pir||C57987 nrfC protein - Escherichia
coli >gi|404304|emb|CAA51043.1| (X72298) member of cooF
family containing 4Fe /4S iron sulfur centre
[Escherichia coli] >gi|2367345|gb|AAC77042.1| (AE000480)
formate-dependent nitrite reductase; Fe-S centers
[Escherichia coli K12]
Length = 223
Score = 92.1 bits (225), Expect = 4e-18
Identities = 62/170 (36%), Positives = 83/170 (48%), Gaps = 34/170 (20%)
Query: 10 SRCAGCRYCELWCSYSH---EGVFSLSLSRITIVKDDLLGMDVPVV--------CRQCDP 58
S C GC C C + EGV SR+TI++ + G + P V C+ CD
Sbjct: 44 SLCIGCTACMDACREVNKVPEGV-----SRLTIIRSEPQG-EFPDVKYRFFRKSCQHCDH 97
Query: 59 APCMEACPTGAIKRE--NGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-- 114
APC++ CPTGA R+ +G++ V+ + C GC C+ ACP+ +H TK A CD C
Sbjct: 98 APCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRK 157
Query: 115 -----GGDPVCIAKCPTNALSLSNLSDIEPNGSGSR------EYEYALRL 153
G P C+ CPT AL+ NL D PN S+ Y Y L L
Sbjct: 158 TNLQAGKLPACVEACPTKALTFGNLDD--PNSEISQLLRQKPTYRYKLAL 205
>dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number P37127]~start codon
is not identified yet [Escherichia coli]
Length = 671
Score = 92.1 bits (225), Expect = 4e-18
Identities = 57/168 (33%), Positives = 82/168 (47%), Gaps = 22/168 (13%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHEGVFSLSLS-----RITIVKDDLLGMDVPVVCRQCDPA 59
I N +C GC CE+ C +H + RIT++K V C C+ A
Sbjct: 17 IMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQ--QRSAVTCHHCEDA 74
Query: 60 PCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVAL--------IC 111
PC +CP GAI + + V+ ++C GC CV ACPFG +++ V T VA C
Sbjct: 75 PCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQI-VLTPVAAGKVKATAHKC 133
Query: 112 DLCGG---DPVCIAKCPTNALSLSNLSDIEPNG-SGSREYEYALRLHK 155
DLC G P C+ CP +AL L ++D+ +G + SR A + H+
Sbjct: 134 DLCAGRENGPACVENCPADALQL--VTDVALSGMAKSRRLRTARQEHQ 179
>sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG protein - Escherichia
coli (strain K-12) >gi|1788811|gb|AAC75521.1| (AE000333)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 659
Score = 92.1 bits (225), Expect = 4e-18
Identities = 57/168 (33%), Positives = 82/168 (47%), Gaps = 22/168 (13%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHEGVFSLSLS-----RITIVKDDLLGMDVPVVCRQCDPA 59
I N +C GC CE+ C +H + RIT++K V C C+ A
Sbjct: 5 IMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITVIKHQQ--QRSAVTCHHCEDA 62
Query: 60 PCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVAL--------IC 111
PC +CP GAI + + V+ ++C GC CV ACPFG +++ V T VA C
Sbjct: 63 PCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTMQI-VLTPVAAGKVKATAHKC 121
Query: 112 DLCGG---DPVCIAKCPTNALSLSNLSDIEPNG-SGSREYEYALRLHK 155
DLC G P C+ CP +AL L ++D+ +G + SR A + H+
Sbjct: 122 DLCAGRENGPACVENCPADALQL--VTDVALSGMAKSRRLRTARQEHQ 167
>pir||F70306 dimethylsulfoxide reductase chain B - Aquifex aeolicus
>gi|2982814|gb|AAC06437.1| (AE000672) dimethylsulfoxide
reductase chain B [Aquifex aeolicus]
Length = 170
Score = 91.7 bits (224), Expect = 5e-18
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 14/144 (9%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLS-----RITIVKDDLLGMDVPVVCRQCDPAPC 61
+++ RC GC CE+ C +G+ SL + R+ + ++ P+ C CDPAPC
Sbjct: 8 IDLDRCIGCLSCEVAC-VQEKGLESLYIRPMKVFRVEGISEEPGAFYYPMNCFHCDPAPC 66
Query: 62 MEACPTGAIKR--ENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC----- 114
+ ACPT A+++ ++G++ V C GC C+ ACP+GA+ + T+ CD C
Sbjct: 67 VVACPTSAMRKREKDGIVYVEQTLCIGCKACIIACPYGAITFNPATQKVEKCDYCYKRVD 126
Query: 115 -GGDPVCIAKCPTNALSLSNLSDI 137
G P C+ KC TN L + ++
Sbjct: 127 KGLLPSCVEKCVTNCLYFVEVDEV 150
>gb|AAC43166.1| (U00006) matches PS00198: 4Fe-4S ferredoxins, iron-sulfur binding
region signature, and PS00178: Aminoacyl-transfer RNA
synthetases class-I signature [Escherichia coli]
Length = 223
Score = 90.9 bits (222), Expect = 8e-18
Identities = 59/167 (35%), Positives = 82/167 (48%), Gaps = 28/167 (16%)
Query: 10 SRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVV--------CRQCDPAPC 61
S C GC C C ++ + SR+TI++ + G + P V C+ CD APC
Sbjct: 44 SLCIGCTACMDACREVNK--VPEASSRLTIIRSEPQG-EFPDVKYRFFRKSCQHCDHAPC 100
Query: 62 MEACPTGAIKRE--NGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC----- 114
++ CPTGA R+ +G++ V+ + C GC C+ ACP+ +H TK A CD C
Sbjct: 101 VDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL 160
Query: 115 --GGDPVCIAKCPTNALSLSNLSDIEPNGSGSR------EYEYALRL 153
G P C+ CPT AL+ NL D PN S+ Y Y L L
Sbjct: 161 QAGKLPACVEACPTKALTFGNLDD--PNSEISQLLRQKPTYRYKLAL 205
>sp|P37601|PHSB_SALTY THIOSULFATE REDUCTASE ELECTRON TRANSPORT PROTEIN PHSB
>gi|2117581|pir||B57143 thiosulfate--dithiol
sulfurtransferase (EC 2.8.1.5) phsB chain - Salmonella
typhimurium >gi|755677|gb|AAC36935.1| (L32188)
thiosulfate reductase [Salmonella typhimurium]
Length = 192
Score = 90.9 bits (222), Expect = 8e-18
Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 11 RCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLG------MDVPVVCRQCDPAPCMEA 64
RC GC+ C + C ++ S ++ I + V V C+ C+ APC+
Sbjct: 16 RCIGCQACTVACKVLNDVPEGFSRVQVQIRAPEQASNALTHFQFVRVSCQHCENAPCVSV 75
Query: 65 CPTGAIKR-ENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-------GG 116
CPTGA R ENG++ V C GC CV ACPF L+ +T VA C+ C G
Sbjct: 76 CPTGASYRDENGIVQVDKSRCIGCDYCVAACPFHVRYLNPQTGVADKCNFCADTRLAAGQ 135
Query: 117 DPVCIAKCPTNALSLSNLSDIE 138
P C++ CPT+AL L + E
Sbjct: 136 SPACVSVCPTDALKFGRLDESE 157
>gb|AAD00534.1| (U82372) putative molybdopterin oxidoreductase iron-sulfur binding
subunit [Pyrobaculum aerophilum]
Length = 214
Score = 90.9 bits (222), Expect = 8e-18
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHE---GVFSLSLSRITIVKDDLLGMDVPVVCRQCDP 58
R + ++VS+C GC C + C+ + GVF + R + K + + VP C C+
Sbjct: 34 RWAMYIDVSKCYGCYACMVACAAENNVPIGVFRTWIER-HVTKGGTV-IFVPKQCNHCEN 91
Query: 59 APCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC--- 114
APC++ CPTGA K E+G+++V+ + C GCG C++ACP+GA + V C C
Sbjct: 92 APCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGARFFNPVKGVVDKCTFCSHR 151
Query: 115 ---GGDPVCIAKCPTNALSLSNLSD 136
G P C+ CPT A +L+D
Sbjct: 152 IYQGKLPACVETCPTGARVFGDLND 176
>gb|AAF91267.1|AF230199_9 (AF230199) pyruvate oxidoreductase cysteine-rich subunit 2
[Methanococcus maripaludis]
Length = 138
Score = 90.5 bits (221), Expect = 1e-17
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 24/160 (15%)
Query: 3 LRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCM 62
+++ N+ C C+ CE C + VF +P+ C C+ APC+
Sbjct: 1 MKVMPNIDLCVDCKKCERACPINAIHVFD----------------GIPIRCMHCEDAPCL 44
Query: 63 EACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC--GGDPVC 120
CP AI++ +VV E+C GC C CP GA+++ TKVA+ CD C G VC
Sbjct: 45 NVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQIDRCTKVAVKCDGCIERGSEVC 104
Query: 121 IAKCPTNALSLSNLSDIEPNGSGSREYEYALRLHKNLARE 160
+ CPT AL D N ++ E +L K +R+
Sbjct: 105 LEVCPTKAL------DYYENTIENKRAELVSKLKKLTSRK 138
>pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jannaschii
Length = 168
Score = 88.9 bits (217), Expect = 3e-17
Identities = 44/127 (34%), Positives = 68/127 (52%), Gaps = 12/127 (9%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C C C C ++ + RI I++ D G +P+VC+ C APC E CP AI+
Sbjct: 15 CDNCGDCVKACMEKNK------VGRIAIMEKD--GKYIPIVCQHCASAPCKEVCPVSAIE 66
Query: 72 RENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGD-PVCIAKCPTNALS 130
++G + ++ + C GCG C ACPFGA+ + + A C LC GD P C+ C L
Sbjct: 67 HKDGYVYLNEDVCIGCGLCALACPFGAILMEDK---AYKCILCNGDEPACVKACSKRCLE 123
Query: 131 LSNLSDI 137
L +++++
Sbjct: 124 LVDVNEL 130
>gb|AAB98252.1| (U67482) carbon monoxide dehydrogenase, iron sulfur subunit CooF-1
(cooF2) [Methanococcus jannaschii]
Length = 166
Score = 88.9 bits (217), Expect = 3e-17
Identities = 44/127 (34%), Positives = 68/127 (52%), Gaps = 12/127 (9%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C C C C ++ + RI I++ D G +P+VC+ C APC E CP AI+
Sbjct: 13 CDNCGDCVKACMEKNK------VGRIAIMEKD--GKYIPIVCQHCASAPCKEVCPVSAIE 64
Query: 72 RENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGD-PVCIAKCPTNALS 130
++G + ++ + C GCG C ACPFGA+ + + A C LC GD P C+ C L
Sbjct: 65 HKDGYVYLNEDVCIGCGLCALACPFGAILMEDK---AYKCILCNGDEPACVKACSKRCLE 121
Query: 131 LSNLSDI 137
L +++++
Sbjct: 122 LVDVNEL 128
>sp|Q57712|Y264_METJA HYPOTHETICAL PROTEIN MJ0264 >gi|2127910|pir||A64333 formate
hydrogenlyase, subunit 2 - Methanococcus jannaschii
>gi|1592278|gb|AAB98251.1| (U67482) carbon monoxide
dehydrogenase, iron sulfur subunit CooF-1 (cooF1)
[Methanococcus jannaschii]
Length = 153
Score = 88.2 bits (215), Expect = 6e-17
Identities = 53/138 (38%), Positives = 71/138 (51%), Gaps = 24/138 (17%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEA 64
+ VNV C GCR CE C ++ IT + P+ C CD PC+ A
Sbjct: 18 VVVNVGSCIGCRRCERSCP----------INGITF-------NEFPIKCMHCDRNPCLYA 60
Query: 65 CPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGDPVCIAK- 123
CP AI+R N +VV ++C GCG C ACPFGA+++ VA+ C+ C V I K
Sbjct: 61 CPENAIERINNKVVVIKDKCVGCGLCALACPFGAIRI---DGVAIKCNGCYKRDVEICKE 117
Query: 124 -CPTNALSLSNLSDIEPN 140
CPT A ++NL +I N
Sbjct: 118 VCPTGA--INNLEEILNN 133
>pir||G65072 hypothetical protein b2887 - Escherichia coli (strain K-12)
>gi|887837|gb|AAA83068.1| (U28375) ORF_f644 [Escherichia
coli] >gi|1789253|gb|AAC75925.1| (AE000372) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 644
Score = 85.8 bits (209), Expect = 3e-16
Identities = 51/136 (37%), Positives = 70/136 (50%), Gaps = 13/136 (9%)
Query: 5 IEVNVSRCAGCRYCELWCSYSH-EGVFSLSLS----RITIVKDDLLGMDVPVVCRQCDPA 59
I + C GC CE+ C+ +H + + LS S RI +V PV C C+ A
Sbjct: 10 IAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAAN--PVACHHCNNA 67
Query: 60 PCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC----G 115
PC+ ACP A+ ++ + + ++C GC C ACPFG V++ V T +A CDLC
Sbjct: 68 PCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEM-VDT-IAQKCDLCNQRSS 125
Query: 116 GDPVCIAKCPTNALSL 131
G CI CPT AL L
Sbjct: 126 GTQACIEVCPTQALRL 141
>sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
Length = 639
Score = 85.8 bits (209), Expect = 3e-16
Identities = 51/136 (37%), Positives = 70/136 (50%), Gaps = 13/136 (9%)
Query: 5 IEVNVSRCAGCRYCELWCSYSH-EGVFSLSLS----RITIVKDDLLGMDVPVVCRQCDPA 59
I + C GC CE+ C+ +H + + LS S RI +V PV C C+ A
Sbjct: 5 IAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHVVGKGQAAN--PVACHHCNNA 62
Query: 60 PCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC----G 115
PC+ ACP A+ ++ + + ++C GC C ACPFG V++ V T +A CDLC
Sbjct: 63 PCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEM-VDT-IAQKCDLCNQRSS 120
Query: 116 GDPVCIAKCPTNALSL 131
G CI CPT AL L
Sbjct: 121 GTQACIEVCPTQALRL 136
>gi|11498801 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432699|pir||A69400
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2649382|gb|AAB90042.1| (AE001021) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 165
Score = 85.4 bits (208), Expect = 4e-16
Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 11 RCAGCRYCELWCSYSHEGVFSLSLSRITIVKDD--LLGMDVP-----VVCRQCDPAPCME 63
+C GC C + C H RI + D + G V VVCR C APC++
Sbjct: 15 KCIGCYACVIACKVEHSSENFDDPGRIRVFHDGPRITGEKVQQHFKVVVCRHCLSAPCVD 74
Query: 64 ACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC------GG 116
CPTGA+ K E+G+ V+ + C GC C+ CPFGA +L KV I DLC G
Sbjct: 75 ECPTGALRKSEDGMTVLDLDLCIGCKICMEVCPFGAPQLGDDGKVR-IYDLCMPRIEEGK 133
Query: 117 DPVCIAKCPTNALSLSNLSDIE 138
P C++ C L + ++ D++
Sbjct: 134 KPACVSACVAQCLQVKSVEDLK 155
>emb|CAB37414.1| (AJ224978) tetrathionate reductase subunit B (TtrB) [Salmonella
typhimurium] >gi|11139591|gb|AAG31757.1| (AF282268)
tetrathionate reductase subunit B [Salmonella enterica
serovar Typhimurium]
Length = 250
Score = 85.0 bits (207), Expect = 5e-16
Identities = 42/148 (28%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHE---GVFSLSLSRITIVKD---DLLGMDVPVVCRQ 55
R + +++ RC GC+ C + C+ ++ G F ++++ + ++ ++ + +P +C
Sbjct: 49 RYAMLIDLRRCIGCQSCTVSCTIENQTPQGAFRTTVNQYQVQREGSQEVTNVLLPRLCNH 108
Query: 56 CDPAPCMEACPTGA-IKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC 114
CD PC+ CP A +RE+G++VV + C GC CV+ACP+ A ++ T+ A C C
Sbjct: 109 CDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADKCTFC 168
Query: 115 ------GGDPVCIAKCPTNALSLSNLSD 136
G P C+ C A + ++ D
Sbjct: 169 VHRLEAGLLPACVESCVGGARIIGDIKD 196
>gb|AAG29808.1|AF249899_1 (AF249899) carbon monoxide dehydrogenase subunit CooF
[Carboxydothermus hydrogenoformans]
Length = 183
Score = 84.7 bits (206), Expect = 6e-16
Identities = 50/144 (34%), Positives = 70/144 (47%), Gaps = 16/144 (11%)
Query: 4 RIEVNVSRCAGCRYCELWCSYSHEGVFSLSLS---------RITIVKDDLLGMDVPVVCR 54
++ N + C C CE+ CS H SL + +I D G C+
Sbjct: 42 KVIFNKNLCVACHSCEVSCSIIHSSEKSLISAILEGIRPRLQIVYTTGDKTGGITIEQCK 101
Query: 55 QCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDL 113
C A C+EA P GA+ E G +V S E+CTGCG C +ACPF A+++ R + CDL
Sbjct: 102 HCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIRVIDR---CVKCDL 158
Query: 114 C---GGDPVCIAKCPTNALSLSNL 134
C PVC+ CP AL++ +
Sbjct: 159 CKDVSDFPVCVTSCPVGALTVKEV 182
>pir||G64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain B1, anaerobic -
Escherichia coli >gi|1742612|dbj|BAA15313.1| (D90801)
Dimethylsulfoxide reductase (EC 1.8.-.-) chain B
[Escherichia coli] >gi|1742623|dbj|BAA15323.1| (D90802)
Dimethylsulfoxide reductase (EC 1.8.-.-) chain B
[Escherichia coli] >gi|1787872|gb|AAC74661.1| (AE000254)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 205
Score = 84.3 bits (205), Expect = 8e-16
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLSRIT------------IVKDDLLGMDVPVVCR 54
++ SRC GC+ CEL C + +S RI + ++ + + C
Sbjct: 9 IDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCN 68
Query: 55 QCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDL 113
CD C + CP+GA+ KRE+G +VV + C GC C ACP+GA + + CD
Sbjct: 69 HCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTKCDG 128
Query: 114 C------GGDPVCIAKCPTNALSLSNLSDI 137
C G P+C+ CP AL + ++
Sbjct: 129 CYSRVAEGKQPICVESCPLRALEFGPIEEL 158
>pir||B64925 probable iron-sulfur protein b1674 - Escherichia coli
>gi|1549285|gb|AAB47950.1| (U68703) hypothetical protein
[Escherichia coli] >gi|1742752|dbj|BAA15444.1| (D90810)
Respiratory nitrate reductase 1 b chain (EC 1.7.99.4).
[Escherichia coli] >gi|1787963|gb|AAC74744.1| (AE000262)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 208
Score = 83.9 bits (204), Expect = 1e-15
Identities = 46/144 (31%), Positives = 65/144 (44%), Gaps = 19/144 (13%)
Query: 10 SRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMD--------------VPVVCRQ 55
+RC GC CE+ C+ ++G SRI I ++ G + CRQ
Sbjct: 66 ARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQ 125
Query: 56 CDPAPCMEACPTGAI--KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDL 113
C CM CP GAI +++ G + V + C GC C ACP+ ++ +K + C L
Sbjct: 126 CKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVL 185
Query: 114 CGGDPVCIAKCPTNALSLSNLSDI 137
CG C CPT AL + DI
Sbjct: 186 CG---ECANACPTGALKIIEWKDI 206
>pir||G64924 nrfC protein homolog b1671 - Escherichia coli
>gi|1549282|gb|AAB47947.1| (U68703) hypothetical protein
[Escherichia coli] >gi|1742751|dbj|BAA15443.1| (D90810)
Thiosulfate reductase electron transport protein PhsB.
[Escherichia coli] >gi|1787960|gb|AAC74741.1| (AE000262)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 239
Score = 83.5 bits (203), Expect = 1e-15
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 10 SRCAGCRYCELWCSYSHEGVFS---LSLSRITIVKDDLLGMD--VPVVCRQCDPAPCMEA 64
SRC GC C C ++ LS++ I + +D C+ C+ APC++
Sbjct: 61 SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV 120
Query: 65 CPTGAIKR-ENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-------GG 116
CPTGA R E G++ V +C GC C+ ACP+ L+ TKVA CD C G
Sbjct: 121 CPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF 180
Query: 117 DPVCIAKCPTNAL 129
P+C++ CP +AL
Sbjct: 181 PPICVSACPEHAL 193
>pir||G72495 probable polysulfide reductase APE2605 - Aeropyrum pernix (strain
K1) >gi|5106312|dbj|BAA81623.1| (AP000064) 250aa long
hypothetical polysulfide reductase [Aeropyrum pernix]
Length = 250
Score = 83.1 bits (202), Expect = 2e-15
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHE---GVFSLSLSRITIVKDDLLGMDVPVVCRQCDP 58
R + ++V +C GC C + C++ + GV+ + R VK+D + VP C CD
Sbjct: 70 RFAMFIDVDKCYGCYACVVACAHENNVPIGVYRTWIERY--VKEDGTPVYVPKQCNHCDN 127
Query: 59 APCMEACPTGAIK-RENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGD 117
C++ CP A E+G+++V + C GCG C++ CP+GA + VA C C
Sbjct: 128 PSCVDVCPVKATYVNEDGIVLVDDDLCIGCGACIQNCPYGARFYNPIKGVADKCTFCVHR 187
Query: 118 ------PVCIAKCPTNALSLSNLSDIE 138
P C+ CPT A L+D E
Sbjct: 188 IYSDMLPACVEACPTGARVFGELADEE 214
>pir||S03786 dimethylsulfoxide reductase (EC 1.8.-.-) chain B - Escherichia coli
>gi|145756|gb|AAA83844.1| (J03412) anaerobic dimethyl
sulfoxide reductase [Escherichia coli]
Length = 207
Score = 82.3 bits (200), Expect = 3e-15
Identities = 44/150 (29%), Positives = 69/150 (45%), Gaps = 19/150 (12%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLSRIT------------IVKDDLLGMDVPVVCR 54
++ SRC GC+ CEL C + +S RI + ++ + + C
Sbjct: 9 IDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCN 68
Query: 55 QCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDL 113
C+ C + CP+GA+ KRE+G +VV + C GC C ACP+GA + + CD
Sbjct: 69 HCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCDG 128
Query: 114 C------GGDPVCIAKCPTNALSLSNLSDI 137
C G P+C+ CP AL + ++
Sbjct: 129 CYDRVAEGKKPICVESCPLRALDFGPIDEL 158
>sp|P18776|DMSB_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN B (DMSO REDUCTASE
IRON-SULFUR SUBUNIT) >gi|7432713|pir||F64828 anaerobic
dimethylsulfoxide reductase (EC 1.-.-.-) chain B -
Escherichia coli >gi|1651422|dbj|BAA35627.1| (D90727)
Dimethylsulfoxide reductase (EC 1.8.-.-) chain B.
[Escherichia coli] >gi|1787122|gb|AAC73981.1| (AE000191)
anaerobic dimethyl sulfoxide reductase subunit B
[Escherichia coli K12]
Length = 205
Score = 82.3 bits (200), Expect = 3e-15
Identities = 44/150 (29%), Positives = 69/150 (45%), Gaps = 19/150 (12%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLSRIT------------IVKDDLLGMDVPVVCR 54
++ SRC GC+ CEL C + +S RI + ++ + + C
Sbjct: 9 IDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAGGDWQEDNGVWHQNVFAYYLSISCN 68
Query: 55 QCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDL 113
C+ C + CP+GA+ KRE+G +VV + C GC C ACP+GA + + CD
Sbjct: 69 HCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNETKGHMTKCDG 128
Query: 114 C------GGDPVCIAKCPTNALSLSNLSDI 137
C G P+C+ CP AL + ++
Sbjct: 129 CYDRVAEGKKPICVESCPLRALDFGPIDEL 158
>gi|11497774 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432701|pir||E69269
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650484|gb|AAB91070.1| (AE001095) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 180
Score = 82.3 bits (200), Expect = 3e-15
Identities = 47/139 (33%), Positives = 66/139 (46%), Gaps = 12/139 (8%)
Query: 7 VNVSRCAGCRYCELWCSYSHE---GVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCME 63
V+VS+C GC C C+ + G F + R + VP +C CD C+
Sbjct: 11 VDVSKCYGCLSCVAACAAENNVPVGYFRTWVERYAMNGRVAF---VPKICNHCDNPSCVH 67
Query: 64 ACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGD----- 117
ACP A K E G++++ E C GCG C++ACP+GA + A C LC
Sbjct: 68 ACPVNATYKTEEGLVLIDDEICIGCGACIQACPYGARFRNPVKGTADKCTLCNHRIPERL 127
Query: 118 PVCIAKCPTNALSLSNLSD 136
P C+ CPT+A +SD
Sbjct: 128 PACVESCPTSARVYGKMSD 146
>sp|P16428|HYCB_ECOLI FORMATE HYDROGENLYASE SUBUNIT 2 (FHL SUBUNIT 2) (HYDROGENASE-3
COMPONENT B) >gi|7432694|pir||H65052 hydrogenase (EC
1.18.99.1) 3 chain 2 - Escherichia coli
>gi|882617|gb|AAA69234.1| (U29579) formate hydrogenlyase
subunit 2 [Escherichia coli] >gi|1789079|gb|AAC75766.1|
(AE000356) probable small subunit of hydrogenase-3,
iron-sulfur protein (part of formate hydrogenlyase (FHL)
complex) [Escherichia coli K12]
Length = 203
Score = 81.5 bits (198), Expect = 5e-15
Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 39/175 (22%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C GC CE CS +H S+ R+ ++ ++ P +C C+ APC CP AI
Sbjct: 12 CIGCHTCEAACSETHRQHGLQSMPRLRVMLNEK--ESAPQLCHHCEDAPCAVVCPVNAIT 69
Query: 72 RENGVLVVSAEECTGCGECVRACPFGAVKL-------------------------HVRT- 105
R +G + ++ C C C ACPFGA++ V T
Sbjct: 70 RVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAPPAPARVSTL 129
Query: 106 --------KVALICDLCGGD---PVCIAKCPTNALSLSNLSDIEPNGSGSREYEY 149
+A+ CDLC D P C+ CPT AL L + +DI RE +
Sbjct: 130 LDWVPGIRAIAVKCDLCSFDEQGPACVRMCPTKALHLVDNTDIARVSKRKRELTF 184
>pir||D69096 formate hydrogenlyase, iron-sulfur subunit 2 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622846|gb|AAB86186.1| (AE000928) formate
hydrogenlyase, iron-sulfur subunit 2 [Methanobacterium
thermoautotrophicum]
Length = 160
Score = 81.5 bits (198), Expect = 5e-15
Identities = 47/143 (32%), Positives = 67/143 (45%), Gaps = 18/143 (12%)
Query: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDP-- 58
+++ + ++ +RC+GC C C +H V G +P+ C QC P
Sbjct: 6 VKMLMVMDPARCSGCDDCINACRETHG------------VARARKGDRMPLFCLQCHPEK 53
Query: 59 APCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGGD- 117
APC CP GAI+ +G LVV E C C C+ ACP G + ++ K A C LC
Sbjct: 54 APCARICPVGAIREVDGALVVDEESCILCKLCMVACPAGMIVMNTEKKSAEKCTLCMDAE 113
Query: 118 ---PVCIAKCPTNALSLSNLSDI 137
P C+ C N L L +L D+
Sbjct: 114 VILPACVEACKENVLKLVSLDDL 136
>pir||B69099 formate hydrogenlyase, iron-sulfur subunit 2 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622867|gb|AAB86206.1| (AE000929) formate
hydrogenlyase, iron-sulfur subunit 2 [Methanobacterium
thermoautotrophicum]
Length = 143
Score = 80.8 bits (196), Expect = 9e-15
Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 49 VPVVCRQCDP--APCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTK 106
VPV C C P APC+ CP AI +G +V+ + C GCG C ACP GA+ L+ R
Sbjct: 32 VPVFCMHCSPERAPCLNICPEDAIVEVDGAVVILEDRCIGCGLCRDACPVGAITLNER-G 90
Query: 107 VALICDLC--GGDPVCIAKCPTNALSLSN 133
VA+ CDLC P+C+ CP ALS S+
Sbjct: 91 VAVKCDLCIDRDKPLCVMVCPKGALSESS 119
>pir||S08620 probable hydrogenase 3 protein 2 - Escherichia coli
>gi|809680|emb|CAA35547.1| (X17506) hycB [Escherichia
coli] >gi|1093495|prf||2104213B hycB gene [Escherichia
coli]
Length = 203
Score = 80.0 bits (194), Expect = 2e-14
Identities = 51/175 (29%), Positives = 71/175 (40%), Gaps = 39/175 (22%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C GC CE CS +H S+ R+ ++ ++ P +C C+ APC CP AI
Sbjct: 12 CIGCHTCEAACSETHRQHGLQSMPRLRVMLNEK--ESAPQLCHHCEDAPCAVVCPVNAIT 69
Query: 72 RENGVLVVSAEECTGCGECVRACPFGAVKL-------------------------HVRT- 105
R +G + ++ C C C ACPFGA++ V T
Sbjct: 70 RVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPKAPPAPPAPARVSTL 129
Query: 106 --------KVALICDLCGGD---PVCIAKCPTNALSLSNLSDIEPNGSGSREYEY 149
+A+ CDLC D P C CPT AL L + +DI RE +
Sbjct: 130 LDWVPGIRAIAVKCDLCSFDEQGPACARMCPTKALHLVDNTDIARVSKRKRELTF 184
>pir||C69099 formate hydrogenlyase, iron-sulfur subunit I - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622868|gb|AAB86207.1| (AE000929) formate
hydrogenlyase, iron-sulfur subunit I [Methanobacterium
thermoautotrophicum]
Length = 167
Score = 80.0 bits (194), Expect = 2e-14
Identities = 49/130 (37%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 4 RIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCME 63
+I + C GCR CE C + SRI I + D + P++C+QC+ APC
Sbjct: 5 KIVIQPELCDGCRDCEEACKKLY------GASRIMIRELD--DVYYPIICQQCEDAPCRT 56
Query: 64 ACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGG--DPVCI 121
CPT AI E V E C GCG C+ CPFGAV + R A C C P C+
Sbjct: 57 VCPTDAIDDE-----VDPERCIGCGLCMVVCPFGAVVMEDRK--AQKCSQCPNLDTPACV 109
Query: 122 AKCPTNALSL 131
C ALS+
Sbjct: 110 KACSKRALSV 119
>gb|AAD37318.1|AF135170_9 (AF135170) dimethyl sulfoxide reductase subunit B [Yersinia pestis]
Length = 205
Score = 79.2 bits (192), Expect = 3e-14
Identities = 43/150 (28%), Positives = 68/150 (44%), Gaps = 19/150 (12%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVK------------DDLLGMDVPVVCR 54
++ SRC GC+ CEL C +S RI ++ + + C
Sbjct: 9 IDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFAYYLSIACN 68
Query: 55 QCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDL 113
C C + CP+GA+ KR++G +VV+ + C GC C ACP+GA + CD
Sbjct: 69 HCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAEKGHMTKCDG 128
Query: 114 C------GGDPVCIAKCPTNALSLSNLSDI 137
C G P+C+ CP AL ++ + ++
Sbjct: 129 CYERVAVGKKPICVDSCPLRALDMAPIDEL 158
>gb|AAA68432.1| (L31538) iron-sulfur protein [Salmonella typhimurium]
Length = 198
Score = 78.4 bits (190), Expect = 5e-14
Identities = 46/142 (32%), Positives = 64/142 (44%), Gaps = 14/142 (9%)
Query: 11 RCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLG------MDVPVVCRQCDPAPCMEA 64
RC GC+ C + C ++ S ++ I + V V C+ C+ APC+
Sbjct: 22 RCIGCQACTVACKVLNDVPEGFSRVQVQIRAPEQASNALTHFQFVRVSCQHCENAPCVSV 81
Query: 65 C-PTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-------GG 116
C P I + G L V C GC CV ACPF L+ +T VA C+ C G
Sbjct: 82 CLPERHIVMKTGSLQVDKSRCIGCDYCVAACPFHVRYLNPQTGVADKCNFCADTRLAAGQ 141
Query: 117 DPVCIAKCPTNALSLSNLSDIE 138
P C++ CPT+AL L + E
Sbjct: 142 SPACVSVCPTDALKFGRLDESE 163
>sp|Q57619|FER8_METJA PUTATIVE FERREDOXIN MJ0155 >gi|2127909|pir||D64319 probable formate
dehydrogenase (EC 1.2.1.2) iron-sulfur protein -
Methanococcus jannaschii >gi|1498926|gb|AAB98137.1|
(U67472) formate dehydrogenase, iron-sulfur subunit
[Methanococcus jannaschii]
Length = 151
Score = 78.4 bits (190), Expect = 5e-14
Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 5 IEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEA 64
I +N +C C C C H SR+ V +P+ C QC+ APC E
Sbjct: 6 IVLNPEKCTKCYDCINICKEIH------GESRVRKVDG------IPIFCMQCENAPCKEI 53
Query: 65 CPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLCGG----DPVC 120
CP AI ++G+ +V E C CG C ACP GA+ ++ +VA C LC P C
Sbjct: 54 CPVDAIYLKDGIPIVDKERCIACGMCAIACPIGAI--FIKNRVAHKCTLCLDVDRITPAC 111
Query: 121 IAKCPTNALSL 131
+ C AL L
Sbjct: 112 VEACKDKALLL 122
>pir||F83044 nitrate-inducible formate dehydrogenase, beta subunit PA4811
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9951079|gb|AAG08197.1|AE004894_3 (AE004894)
nitrate-inducible formate dehydrogenase, beta subunit
[Pseudomonas aeruginosa]
Length = 309
Score = 77.3 bits (187), Expect = 1e-13
Identities = 50/179 (27%), Positives = 86/179 (47%), Gaps = 35/179 (19%)
Query: 7 VNVSRCAGCRYCELWCSYSHE---------GVF---------SLSLSRITIVKDDLLGMD 48
++VS+C GC+ C++ CS +E G + S ++ R T +++ ++
Sbjct: 29 IDVSKCIGCKACQVACSEWNELRDEVGHNHGTYDNPMDLTADSWTVMRFTEHENEAGNLE 88
Query: 49 VPVV---CRQCDPAPCMEACPT-GAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHV 103
+ C C C++ACP+ GAI K NG++ + ++C GCG C+ CPF ++
Sbjct: 89 WLIRKDGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFDIPRISQ 148
Query: 104 RTKVALICDLC------GGDPVCIAKCPTNALSLSNLSDIEPNGS------GSREYEYA 150
+ A C LC G +P C+ CPT A+ + D++ + + SR YE A
Sbjct: 149 KDHKAYKCSLCSDRVSVGMEPACVKTCPTGAIVFGSKEDMKEHAAERIVDLKSRGYENA 207
>pir||B81298 formate dehydrogenase (EC 1.2.1.2) iron-sulfur chain Cj1510c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968935|emb|CAB73931.1| (AL139078) putative formate
dehydrogenase iron-sulfur subunit [Campylobacter jejuni]
Length = 213
Score = 76.9 bits (186), Expect = 1e-13
Identities = 54/194 (27%), Positives = 77/194 (38%), Gaps = 45/194 (23%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVP--VVCRQCDPA 59
RL+ + RC C C + C +HE + R+ + + + G +V + C CD A
Sbjct: 13 RLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDA 72
Query: 60 PCMEACPTGAIK-RENGVLVVSAEECTGCGECVRACPFGAVK-----LHVRTKVALICDL 113
PC CP R +G+++ E C GCG C+ ACPFGA + + + C +
Sbjct: 73 PCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTM 132
Query: 114 CGGD-----------------------PVCIAKCPTNALSLSNLSDIE------------ 138
C G PVC A C T AL + S IE
Sbjct: 133 CAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNY 192
Query: 139 --PNGSGSREYEYA 150
PN S S E++ A
Sbjct: 193 GIPNPSESLEWKIA 206
>sp|P31076|PSRB_WOLSU POLYSULFIDE REDUCTASE CHAIN B (SULFUR REDUCTASE CHAIN B)
>gi|79394|pir||S23458 polysulfide reductase (EC 1.-.-.-)
iron-sulfur protein psrB - Wolinella succinogenes
>gi|48527|emb|CAA46177.1| (X65042) psrB [Wolinella
succinogenes]
Length = 191
Score = 76.1 bits (184), Expect = 2e-13
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITI-----VKDDLLGMDVP-VVCRQCDPAPCMEAC 65
C GC+ C + C ++ S+ ++ + + D L + C QC+ PC+ C
Sbjct: 14 CIGCQACNIACRSENKIPDSVYRLQVWVQGPKKLPDGTLSFNYHRQSCVQCENTPCVSVC 73
Query: 66 PTGA-IKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-------GGD 117
PT A E+G++ V+ + C GC C+ ACP+ A + TK C+ C G +
Sbjct: 74 PTKASYVNEDGIVSVNVDLCVGCLYCIAACPYQARYVDPVTKAPDKCNFCKDTRLARGEE 133
Query: 118 PVCIAKCPTNALSLSNLSD 136
P C+ CPT+AL+ ++SD
Sbjct: 134 PACVTVCPTDALTFGDMSD 152
>sp|P45015|NRFC_HAEIN NRFC PROTEIN HOMOLOG >gi|1074098|pir||A64181 nrfC protein -
Haemophilus influenzae (strain Rd KW20)
>gi|1574621|gb|AAC22725.1| (U32787) nitrite reductase,
Fe-S protein (nrfC) [Haemophilus influenzae Rd]
Length = 225
Score = 75.7 bits (183), Expect = 3e-13
Identities = 49/155 (31%), Positives = 73/155 (46%), Gaps = 28/155 (18%)
Query: 12 CAGCRYCELWC---SYSHEGVFSLSLSRITIVKDDLLGMDVP--------VVCRQCDPAP 60
C GC C C + EGV SR+ I++ + G + P C+ C AP
Sbjct: 48 CIGCTACMDSCRDVNQVPEGV-----SRLEILRSEPYG-EFPNQEYEFFRQSCQHCTNAP 101
Query: 61 CMEACPTGA--IKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC---- 114
C+ CPTGA I +E G++ V + C GC C+ CP+ +H + A C+ C
Sbjct: 102 CVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPYRVRFIHPIHRTADKCNFCRDTN 161
Query: 115 ---GGDPVCIAKCPTNALSLSNLSDIEPNGSGSRE 146
G P C+ CPT AL+ +++D P + SR+
Sbjct: 162 LANGKQPACVEACPTKALTFGDMND--PTSAVSRK 194
>sp|P27273|FDHB_WOLSU FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT >gi|97331|pir||S18214
formate dehydrogenase (EC 1.2.1.2) chain B - Wolinella
succinogenes >gi|48508|emb|CAA37990.1| (X54057) formate
dehydrogenase [Wolinella succinogenes]
Length = 200
Score = 74.5 bits (180), Expect = 7e-13
Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 45/190 (23%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMD--VPVVCRQCDPA 59
R++ + +RC C C++ C +H ++ R+ + + L+G + + + C C A
Sbjct: 6 RVKFYCDEARCIDCHGCDVACKEAHHLPVGVNRRRVVTLNEGLVGKEKSLSIACMHCSDA 65
Query: 60 PCMEACPTGAIK-RENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALI-------- 110
PC + CP R +G+++ E+C GCG C+ ACPFGA + K +
Sbjct: 66 PCAQVCPVDCFYVRADGIVLHDKEKCIGCGYCLYACPFGAPQF---PKSGIFGSRGPMDK 122
Query: 111 CDLCGGD-----------------------PVCIAKCPTNALSLSNLSDIE--------P 139
C C G PVC A C T AL + I
Sbjct: 123 CTFCAGGPEETHSEKEYKLYGQNRIAEGKVPVCAAMCSTKALLAGDSDSISLIIRERVLK 182
Query: 140 NGSGSREYEY 149
GSG+ Y
Sbjct: 183 RGSGTASVPY 192
>sp|P24184|FDNH_ECOLI FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT
(FORMATE DEHYDROGENASE-N BETA SUBUNIT) (FDH-N BETA
SUBUNIT) (ANAEROBIC FORMATE DEHYDROGENASE IRON-SULFUR
SUBUNIT) >gi|7451556|pir||JS0629 formate dehydrogenase
(EC 1.2.1.2) N (nitrate-inducible) beta chain -
Escherichia coli >gi|1742408|dbj|BAA15124.1| (D90788)
Formate dehydrogenase (EC 1.2.1.2), nitrate-inducible,
beta chain [Escherichia coli]
>gi|1742418|dbj|BAA15133.1| (D90789) Formate
dehydrogenase (EC 1.2.1.2), nitrate-inducible, beta
chain [Escherichia coli] >gi|1787749|gb|AAD13439.1|
(AE000244) formate dehydrogenase-N, nitrate-inducible,
iron-sulfur beta subunit [Escherichia coli K12]
Length = 294
Score = 73.7 bits (178), Expect = 1e-12
Identities = 42/151 (27%), Positives = 69/151 (44%), Gaps = 28/151 (18%)
Query: 7 VNVSRCAGCRYCELWCSYSHE---------GVFS----LSLSRITIVKDDLLGMDVPVV- 52
++VS C GC+ C++ CS ++ GV+ LS T+++ + +
Sbjct: 34 IDVSTCIGCKACQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEW 93
Query: 53 ------CRQCDPAPCMEACPTGA--IKRENGVLVVSAEECTGCGECVRACPFGAVKLHVR 104
C C+ C++ACP+ I+ NG++ +E C GCG C+ CPF +L+
Sbjct: 94 LIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKE 153
Query: 105 TKVALICDLC------GGDPVCIAKCPTNAL 129
C LC G +P C+ CPT A+
Sbjct: 154 DNRVYKCTLCVDRVSVGQEPACVKTCPTGAI 184
>sp|P32175|FDOH_ECOLI FORMATE DEHYDROGENASE-O, IRON-SULFUR SUBUNIT (FORMATE
DEHYDROGENASE-O BETA SUBUNIT) (FDH-Z BETA SUBUNIT)
(AEROBIC FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT)
>gi|541070|pir||S40837 formate dehydrogenase (EC
1.2.1.2) O (aerobic) beta chain - Escherichia coli
>gi|304997|gb|AAB03026.1| (L19201) formate
dehydrogenase-O beta subunit [Escherichia coli]
>gi|1790326|gb|AAD13455.1| (AE000464) formate
dehydrogenase-O, iron-sulfur subunit [Escherichia coli
K12]
Length = 300
Score = 73.7 bits (178), Expect = 1e-12
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 28/151 (18%)
Query: 7 VNVSRCAGCRYCELWCSYSHE---------GVFS----LSLSRITIVK-------DDLLG 46
++V+ C GC+ C++ CS ++ GV+ LS T+++ D L
Sbjct: 34 IDVTTCIGCKACQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEW 93
Query: 47 MDVPVVCRQCDPAPCMEACPT--GAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVR 104
+ C C C++ACP I+ NG++ +E+C GCG C+ CPF +L+
Sbjct: 94 LIRKDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPE 153
Query: 105 TKVALICDLC------GGDPVCIAKCPTNAL 129
C LC G +P C+ CPT A+
Sbjct: 154 DNRVYKCTLCVDRVVVGQEPACVKTCPTGAI 184
>gb|AAB06234.1| (U26665) dimethyl sulphoxide reductase subunit B [Haemophilus
influenzae]
Length = 205
Score = 73.4 bits (177), Expect = 2e-12
Identities = 41/147 (27%), Positives = 64/147 (42%), Gaps = 20/147 (13%)
Query: 11 RCAGCRYCELWCSYSHEGVFSLSLSRITIVK-------------DDLLGMDVPVVCRQCD 57
RC GC+ CEL C + ++ RI ++ G + + C C
Sbjct: 12 RCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFGYYMSISCNHCA 71
Query: 58 PAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-- 114
C + CPTGA+ K +G ++V+ E C GC C ACP+ A + + CD C
Sbjct: 72 DPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYS 131
Query: 115 ----GGDPVCIAKCPTNALSLSNLSDI 137
G P+C+ CP AL + + ++
Sbjct: 132 RVKSGQKPICVDACPLRALDFAPIDEL 158
>gi|11497792 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432702|pir||G69271
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650470|gb|AAB91057.1| (AE001094) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 251
Score = 73.0 bits (176), Expect = 2e-12
Identities = 37/109 (33%), Positives = 56/109 (50%), Gaps = 12/109 (11%)
Query: 1 MRLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKD-----------DLLGMDV 49
+R + ++++RC GCR C + C + R+ V +L + +
Sbjct: 2 VRYGMVIDLNRCIGCRSCAVICKIHNSLPPGTWWHRVETVGSKEHQTPSGDYPNLTELYL 61
Query: 50 PVVCRQCDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFG 97
PV C CD PC++ CP GA KRE+GV++V E C GC C+ ACP+G
Sbjct: 62 PVPCMHCDNPPCVKVCPVGATWKREDGVVLVDFERCIGCRYCMTACPYG 110
>gi|11497696 iron-sulfur cluster binding protein [Archaeoglobus fulgidus]
>gi|7483839|pir||D69259 iron-sulfur cluster binding
protein homolog - Archaeoglobus fulgidus
>gi|2650575|gb|AAB91155.1| (AE001101) iron-sulfur
cluster binding protein [Archaeoglobus fulgidus]
Length = 136
Score = 73.0 bits (176), Expect = 2e-12
Identities = 43/133 (32%), Positives = 64/133 (47%), Gaps = 9/133 (6%)
Query: 2 RLRIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMD---VPVVCRQCDP 58
RL +E ++ +C GC C CS + S I+ L G + + CR C+
Sbjct: 3 RLVVE-DIEKCVGCGLCMFACSRKFAKRPEIGNSSSAILPVSLSGFERGATIIFCRACEE 61
Query: 59 APCMEACPTGAIKRENGVLVVSAEE-CTGCGECVRACPFGAVKLHVRTKVALICDLCGGD 117
PC++ CPTGA+K + G V+ E C GC CV AC A+ + K+A +C CG
Sbjct: 62 PPCVQVCPTGALKPKKGGGVIYLENLCLGCHYCVEACTLNAIFVREDGKIA-VCIHCG-- 118
Query: 118 PVCIAKCPTNALS 130
C + CP ++
Sbjct: 119 -YCASYCPHEVIA 130
>sp|P20925|YFRA_PROVU FRD OPERON PROBABLE IRON-SULFUR PROTEIN A >gi|79027|pir||S00117
probable iron-sulfur protein A - Proteus vulgaris
(fragment) >gi|1333800|emb|CAA29509.1| (X06151) put.
OrfA' (AA 1-151) [Proteus vulgaris]
Length = 157
Score = 72.6 bits (175), Expect = 3e-12
Identities = 39/112 (34%), Positives = 51/112 (44%), Gaps = 20/112 (17%)
Query: 36 RITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACP 95
RI +VK + VVC QC+ APC CP GAI V ++C GC CV ACP
Sbjct: 19 RIHVVKG--FSISTAVVCHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACP 76
Query: 96 FGAVKLHVRTKVALI---------------CDLC---GGDPVCIAKCPTNAL 129
+G +++ R + + CDLC P C+ CPT AL
Sbjct: 77 YGTMEVVSRPVMRKLTALNTIEAFKAEANKCDLCHHRAEGPACVEVCPTQAL 128
>sp|P23481|HYFA_ECOLI HYDROGENASE-4 COMPONENT A >gi|538761|pir||C49749 hypothetical
protein 1(bcp 3' region) - Escherichia coli
>gi|147018|gb|AAB88563.1| (M63654) HyfA [Escherichia
coli] >gi|1799909|dbj|BAA16359.1| (D90876) similar to
[PIR Accession Number C49749] [Escherichia coli]
>gi|1805540|dbj|BAA16369.1| (D90877) similar to [PIR
Accession Number C49749] [Escherichia coli]
Length = 205
Score = 72.2 bits (174), Expect = 4e-12
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C GC C CS H+ R+ + K + PVVC C+ APC++ CP AI
Sbjct: 12 CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTI--TAPVVCHHCEEAPCLQVCPVNAIS 69
Query: 72 RENGVLVVSAEECTGCGECVRACPFGA--------VKLHVR------------------- 104
+ + + ++ C GC C CPFGA V H +
Sbjct: 70 QRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEENAPTQ 129
Query: 105 ----------TKVALICDLCG---GDPVCIAKCPTNALSL 131
VA+ CDLC P C+ CP AL L
Sbjct: 130 HALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRL 169
>pir||H65023 hypothetical 22.2K protein (bcp 3'region) - Escherichia coli
>gi|1788826|gb|AAC75534.1| (AE000335) hydrogenase 4 Fe-S
subunit [Escherichia coli K12]
Length = 218
Score = 72.2 bits (174), Expect = 4e-12
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 12 CAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGAIK 71
C GC C CS H+ R+ + K + PVVC C+ APC++ CP AI
Sbjct: 25 CTGCNTCLAACSDVHKTQGLQQHPRLALAKTSTI--TAPVVCHHCEEAPCLQVCPVNAIS 82
Query: 72 RENGVLVVSAEECTGCGECVRACPFGA--------VKLHVR------------------- 104
+ + + ++ C GC C CPFGA V H +
Sbjct: 83 QRDDAIQLNESLCIGCKLCAVVCPFGAISASGSRPVNAHAQYVFQAEGSLKDGEENAPTQ 142
Query: 105 ----------TKVALICDLCG---GDPVCIAKCPTNALSL 131
VA+ CDLC P C+ CP AL L
Sbjct: 143 HALLRWEPGVQTVAVKCDLCDFLPEGPACVRACPNQALRL 182
>gb|AAK41790.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
[Sulfolobus solfataricus]
Length = 228
Score = 72.2 bits (174), Expect = 4e-12
Identities = 56/171 (32%), Positives = 72/171 (41%), Gaps = 37/171 (21%)
Query: 7 VNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLG-------MDVPVVCRQCDPA 59
V V +C GC C C+ ++ F L R T V+D LG + VP +C QC+
Sbjct: 25 VKVDQCLGCDACVAACTIENQTPFWRGLFR-THVEDLELGEYPNTQRVFVPRLCMQCENP 83
Query: 60 PCMEACPTGAIK-RENGVLVVSAEECTGCGECVRACPFGA------------------VK 100
PC CPTGA + G++VV +C GC CV ACP+GA
Sbjct: 84 PCYYVCPTGATQIVAGGIVVVDEYKCMGCLYCVEACPYGARYFYTYEDIEKSKEYFGLNS 143
Query: 101 LHVRTKVALICDLCGG-------DPVCIAKCPTNALSLSNLSDIEPNGSGS 144
+HV V C C G P C+ CP +A L D PN S
Sbjct: 144 IHVVPHVDK-CTFCYGTAPEGTYTPACVRTCPGHARVFGCLDD--PNSEVS 191
>sp|P44450|FDXH_HAEIN FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT (FORMATE DEHYDROGENASE
BETA SUBUNIT) (FDH BETA SUBUNIT) >gi|1074094|pir||A64042
formate dehydrogenase (EC 1.2.1.2), nitrate-inducible,
beta chain - Haemophilus influenzae (strain Rd KW20)
>gi|1572950|gb|AAC21685.1| (U32686) formate
dehydrogenase, beta subunit (fdxH) [Haemophilus
influenzae Rd]
Length = 312
Score = 71.4 bits (172), Expect = 6e-12
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 7 VNVSRCAGCRYCELWCSYSHE----------GVFS----LSLSRITIVK-------DDLL 45
++VS C GC+ C++ CS ++ GV+ L T+++ D L
Sbjct: 39 IDVSTCIGCKACQVGCSEWNDIRSDINAQCVGVYDNPVDLDAKAWTVMRFNEVEENDRLE 98
Query: 46 GMDVPVVCRQCDPAPCMEACPT--GAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHV 103
+ C C C++ACP I+ NG++ +++C GCG C+ CPF +++
Sbjct: 99 WLIRKDGCMHCTEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNP 158
Query: 104 RTKVALICDLC------GGDPVCIAKCPTNALSLSNLSDIE 138
C LC G +P C+ CPT A+ + +++
Sbjct: 159 EDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIRFGSKEEMK 199
>sp|P45003|DMSB_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN B (DMSO REDUCTASE
IRON-SULFUR SUBUNIT) >gi|1073845|pir||F64109
dimethylsulfoxide reductase (EC 1.8.-.-) chain B,
anaerobic - Haemophilus influenzae (strain Rd KW20)
>gi|1574080|gb|AAC22705.1| (U32785) anaerobic dimethyl
sulfoxide reductase, chain B (dmsB) [Haemophilus
influenzae Rd]
Length = 205
Score = 71.0 bits (171), Expect = 8e-12
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 11 RCAGCRYCELWCSYSHEGVFSLSLSRITIVK-------------DDLLGMDVPVVCRQCD 57
RC GC+ CEL C + ++ RI ++ + + C C
Sbjct: 12 RCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCA 71
Query: 58 PAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-- 114
C + CPTGA+ K +G ++V+ E C GC C ACP+ A + + CD C
Sbjct: 72 DPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYS 131
Query: 115 ----GGDPVCIAKCPTNALSLSNLSDI 137
G P+C+ CP AL + + ++
Sbjct: 132 RVKSGQKPICVDACPLRALDFAPIDEL 158
>gi|11499962 molybdopterin oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus] >gi|7432700|pir||A69548
molybdopterin oxidoreductase, iron-sulfur binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650708|gb|AAB91278.1| (AE001111) molybdopterin
oxidoreductase, iron-sulfur binding subunit
[Archaeoglobus fulgidus]
Length = 182
Score = 71.0 bits (171), Expect = 8e-12
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 2 RLRIEVNVSRCAGCRYCELWC----SYSHEGVFSLSLSRITIVK-DDLLGMDVPVVCRQC 56
R + +++ +C GC C C + +E + R+ K ++ M + +C+ C
Sbjct: 3 RYGMVIDLEKCLGCEACVTACIEENNVPYETGLRTQVHRVVTGKFPNVSTMYMHRICQHC 62
Query: 57 DPAPCMEACPTGA-IKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC- 114
+ C+ CPTGA E+G++++ + C GC C+ ACP+ A +H C C
Sbjct: 63 EHPGCVHVCPTGASYVNEDGIVLIDYDLCIGCKYCMVACPYLARYIHPERHTPDKCTFCV 122
Query: 115 -----GGDPVCIAKCPTNALSLSNLSD 136
G P C+ CP NA +L D
Sbjct: 123 HRVKEGKLPACVETCPANARIFGDLDD 149
>gb|AAG23607.1|AF244658_1 (AF244658) carbon monoxide dehydrogenase [Carboxydothermus
hydrogenoformans]
Length = 128
Score = 71.0 bits (171), Expect = 8e-12
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 4 RIEVNVSRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVV--------CRQ 55
++ N + C C CE+ CS H SL + ++ L + P C+
Sbjct: 3 KVIFNKNLCVACHSCEVSCSIIHSSEKSLISAIXEGIRPRLQIVIPPATKPENYHRQCKH 62
Query: 56 CDPAPCMEACPTGAI-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC 114
C A C+EA P GA+ E G +V S E+CTGCG C +ACPF A+++ R + CDLC
Sbjct: 63 CKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIRVIDR---CVKCDLC 119
>gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
[Sulfolobus solfataricus]
Length = 409
Score = 68.3 bits (164), Expect = 5e-11
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 10 SRCAGCRYCELWCSYSHEGVFSLSLSRITIVKDDLLGMDVPVVCRQCDPAPCMEACPTGA 69
++C C C C+ ++ + SL +T + + + C CD CM+ CP A
Sbjct: 23 NKCIICNACVDACNKAYGDLNWRSLIVMTHGESKTA---LSIACNHCDNPTCMQVCPANA 79
Query: 70 I-KRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVALICDLC-------GGDPVCI 121
I K E G++ + ++C GCG C ACP+ A+K + V C C G P C+
Sbjct: 80 IEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFN-NEGVMSKCHFCYDRLAEGKGIPYCV 138
Query: 122 AKCPTNALS 130
CPT AL+
Sbjct: 139 EACPTGALA 147
>pir||D70406 DMSO reductase chain B - Aquifex aeolicus
>gi|2983679|gb|AAC07244.1| (AE000730) DMSO reductase
chain B [Aquifex aeolicus]
Length = 254
Score = 67.5 bits (162), Expect = 9e-11
Identities = 35/102 (34%), Positives = 49/102 (47%), Gaps = 14/102 (13%)
Query: 49 VPVVCRQCDPAPCMEACPTGA-IKRE-NGVLVVSAEECTGCGECVRACPFGAVKLHVRTK 106
+P C C APC+ CPTGA KRE +G+++V+ ++C GC C ACP+G + K
Sbjct: 69 LPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWACPYGCREFDEADK 128
Query: 107 VALICDLC------------GGDPVCIAKCPTNALSLSNLSD 136
V C LC P C+ CP A ++ D
Sbjct: 129 VMKKCTLCIDRIYDETLPPEHRQPACVLTCPARARFFGDIED 170
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.139 0.458
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64836774
Number of Sequences: 2977
Number of extensions: 2692883
Number of successful extensions: 10779
Number of sequences better than 1.0e-10: 64
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 10415
Number of HSP's gapped (non-prelim): 149
length of query: 166
length of database: 189,106,746
effective HSP length: 47
effective length of query: 119
effective length of database: 160,977,857
effective search space: 19156364983
effective search space used: 19156364983
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 162 (67.5 bits)