BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2086 (cdc48-1) DE:CELL DIVISION CONTROL PROTEIN 48, AAA
FAMILY (CDC48-1)
(795 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75154 cell division control protein 48, aaa family (cdc48-... 1566 0.0
pir||B71196 probable transitional endoplasmic reticulum ATPase -... 1477 0.0
pir||D75046 transitional endoplasmic reticulum atpase PAB1478 - ... 1144 0.0
pir||H71114 probable cell division control protein (transitional... 1140 0.0
dbj|BAA87866.1| (AB018433) Pk-cdcA [Pyrococcus kodakaraensis] 1106 0.0
gi|11499681 cell division control protein 48, AAA family (cdc48-... 907 0.0
gi|11498895 cell division control protein 48, AAA family (cdc48-... 906 0.0
sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ11... 873 0.0
sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase -... 834 0.0
pir||D72613 probable transitional endoplasmic reticulum ATPase A... 826 0.0
gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus] 799 0.0
pir||B72479 probable transitional endoplasmic reticulum ATPase A... 794 0.0
pir||A69086 cell division control protein Cdc48 - Methanobacteri... 784 0.0
gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus] 774 0.0
sp|O05209|VAT_THEAC VCP-LIKE ATPASE >gi|7484232|pir||T37458 VCP-... 767 0.0
gb|AAG19919.1| (AE005075) cell division cycle protein; Cdc48c [H... 725 0.0
sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH pr... 724 0.0
gb|AAG19776.1| (AE005063) cell division cycle protein; Cdc48b [H... 711 0.0
gb|AAG20864.1| (AE005154) cell division cycle protein; Cdc48d [H... 694 0.0
sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|... 652 0.0
pir||T46169 CDC48-like protein - Arabidopsis thaliana >gi|663074... 652 0.0
sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|... 649 0.0
pir||T48355 transitional endoplasmic reticulum ATPase - Arabidop... 644 0.0
gb|AAB40928.2| (U83085) cell division cycle protein 48 [Dictyost... 622 e-177
sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VAL... 619 e-176
gi|6005942 valosin-containing protein [Homo sapiens] >gi|1142956... 613 e-174
sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TE... 613 e-174
pir||VPPG transitional endoplasmic reticulum ATPase - pig >gi|22... 613 e-174
gi|6678559 valosin containing protein; homolog of yeast cdc48 (S... 613 e-174
sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE H... 613 e-174
sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TE... 612 e-174
sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (... 610 e-173
gb|AAC02215.1| (AF044488) valosin-containing protein homolog [Tr... 590 e-167
sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE H... 589 e-167
gi|6320077 microsomal ATPase; Cdc48p [Saccharomyces cerevisiae] ... 585 e-166
gb|AAD27852.1|AF132553_1 (AF132553) BcDNA.GM02885 [Drosophila me... 578 e-164
gb|AAF74998.1| (AF199367) cdc48-like protein [Entamoeba histolyt... 576 e-163
gb|AAC27447.1| (AF047037) transitional endoplasmic reticulum ATP... 574 e-162
gb|AAF17568.1|AF202034_1 (AF202034) endoplasmic reticulum membra... 560 e-158
gi|10946660 spermatogenesis associated factor [Mus musculus] >gi... 555 e-157
gi|6323429 homology to the CDC48 gene product; Afg2p [Saccharomy... 523 e-147
pir||T40537 AAA family ATPase - fission yeast (Schizosaccharomyc... 496 e-139
pir||T51257 calmodulin-binding protein - Arabidopsis thaliana >g... 467 e-130
pir||T50928 calmodulin-binding protein [imported] - Arabidopsis ... 459 e-128
gi|6322994 Yll034cp [Saccharomyces cerevisiae] >gi|2492526|sp|Q0... 455 e-127
pir||T39584 hypothetical protein SPBC16E9.10c - fission yeast (... 452 e-126
gb|AAB70457.1| (U68140) nuclear VCP-like protein NVLp.2 [Homo sa... 446 e-124
gi|4505483 nuclear VCP-like; Nuclear valosin-containing protein-... 446 e-124
gb|AAF01545.1|AC009325_15 (AC009325) putative cell division cont... 440 e-122
gb|AAD20084.1| (AC006836) putative AAA-type ATPase [Arabidopsis ... 413 e-114
dbj|BAA85441.1| (AP000616) EST D15969(C1695) corresponds to a re... 401 e-110
pir||T46437 hypothetical protein DKFZp434K0126.1 - human (fragme... 373 e-102
emb|CAB60418.1| (AL117203) contains similarity to Pfam domain: P... 371 e-101
pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans 371 e-101
gb|AAF05624.1| (AF059715) cell survival CED-4-interacting protei... 366 e-100
gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus] 365 1e-99
gb|AAF53216.1| (AE003637) CG5776 gene product [Drosophila melano... 361 2e-98
pir||T11652 probable transitional endoplasmic reticulum ATPase -... 353 5e-96
gb|AAG19767.1| (AE005062) cell division cycle protein; Cdc48a [H... 331 2e-89
gb|AAG29874.1| (AF313486) valosin-containing protein [Homo sapiens] 317 2e-85
dbj|BAB14482.1| (AK023232) unnamed protein product [Homo sapiens] 317 4e-85
emb|CAB99275.1| (AL390274) yeast cdc48 homologue; transitional e... 309 1e-82
emb|CAA67594.1| (X99207) smallminded [Drosophila melanogaster] 298 2e-79
gb|AAF50566.1| (AE003559) smid gene product [Drosophila melanoga... 298 2e-79
pir||T23322 hypothetical protein K04G2.3 - Caenorhabditis elegan... 296 8e-79
gi|11419443 peroxisome biogenesis factor 1 [Homo sapiens] 287 3e-76
gi|4505725 peroxisome biogenesis factor 1 [Homo sapiens] >gi|813... 287 3e-76
sp|Q58576|PRS1_METJA PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) (2... 284 2e-75
sp|P46463|PEX1_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS1 (PEROX... 284 3e-75
pir||A70632 hypothetical protein Rv0435c - Mycobacterium tubercu... 282 1e-74
sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROX... 276 6e-73
sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXIS... 273 7e-72
gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus] 272 9e-72
sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|7492793|pir||T37816 ... 272 1e-71
gi|11499558 26S protease regulatory subunit 4 [Archaeoglobus ful... 272 1e-71
gb|AAG29873.1| (AF313486) valosin-containing protein [Homo sapiens] 272 1e-71
dbj|BAA24931.1| (D89660) peroxisome assembly factor-2 [Rattus no... 270 6e-71
sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 268 1e-70
sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROX... 267 4e-70
pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pasto... 267 4e-70
gb|AAD25809.1|AC006550_17 (AC006550) Belongs to PF|00004 ATPases... 266 5e-70
gb|AAD52812.1|AF129874_1 (AF129874) peroxin-6 [Pichia angusta] 266 8e-70
sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552... 265 2e-69
dbj|BAB09996.1| (AB006697) contains similarity to ATPase; peroxi... 264 2e-69
gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus] 263 4e-69
pir||G71242 probable 26S proteinase regulatory subunit - Pyrococ... 263 4e-69
gi|6324000 Member of the AAA-protein family that includes NSFp a... 263 6e-69
emb|CAA58229.1| (X83226) peroxisome biogenesis invlved proteind ... 263 6e-69
pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococc... 263 6e-69
gb|AAD52811.1|AF129873_1 (AF129873) peroxin-1 [Pichia angusta] 263 7e-69
gb|AAF58736.1| (AE003828) CG11919 gene product [Drosophila melan... 260 4e-68
gb|AAF20144.1|AF208231_1 (AF208231) peroxisome assembly protein ... 258 2e-67
sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROX... 254 2e-66
gi|4505729 peroxisomal biogenesis factor 6; Peroxisomal biogenes... 254 2e-66
gi|11417640 peroxisomal biogenesis factor 6 [Homo sapiens] 254 2e-66
gb|AAB46346.1| (AC000064) ATPase; strong similarity to peroxisom... 252 8e-66
gb|AAF47769.1| (AE003478) CG12010 gene product [Drosophila melan... 250 3e-65
gb|AAF58864.1| (AE003831) TER94 gene product [alt 1] [Drosophila... 248 2e-64
pir||F72504 probable 26S proteinase regulatory subunit APE2012 -... 247 3e-64
gb|AAG09749.1|AF233277_1 (AF233277) peroxin-6 [Penicillium chrys... 246 8e-64
sp|O67077|FTSH_AQUAE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 245 2e-63
dbj|BAA96090.1| (AB032368) FtsH [Thermus thermophilus] 245 2e-63
gb|AAG19042.1| (AE005003) ATP-dependent 26S proteinase regulator... 242 9e-63
gb|AAF22523.1|AF123392_1 (AF123392) 26S proteasome AAA-ATPase su... 240 4e-62
sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (... 237 3e-61
pir||T31466 cell-division protein homolog ftsH - Heliobacillus m... 237 3e-61
gb|AAF69154.1|AC007915_6 (AC007915) F27F5.8 [Arabidopsis thaliana] 237 3e-61
dbj|BAB17625.1| (AB033536) 26S proteasome regulatory particle tr... 237 3e-61
gb|AAF91245.1|AF227501_1 (AF227501) proteasome regulatory ATPase... 236 5e-61
gb|AAG09748.1|AF233276_1 (AF233276) peroxin-1 [Penicillium chrys... 236 7e-61
sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|74... 236 7e-61
pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (str... 236 7e-61
gb|AAF22524.1|AF123393_1 (AF123393) 26S proteasome AAA-ATPase su... 236 7e-61
emb|CAA56963.1| (X81072) YTA7 [Saccharomyces cerevisiae] 236 9e-61
gi|6321709 26S proteasome ATPase; Yta7p [Saccharomyces cerevisia... 236 9e-61
sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT S1... 235 2e-60
gb|AAF08387.1|AF145306_1 (AF145306) 26S proteasome regulatory co... 234 3e-60
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb... 233 5e-60
emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-contai... 233 5e-60
gi|11418569 katanin p60 (ATPase-containing) subunit A 1 [Homo sa... 233 5e-60
sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASO... 233 6e-60
sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >... 233 6e-60
sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 233 6e-60
sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT 8 >gi|22454... 233 6e-60
gb|AAC63219.1| (AF043734) Pros45 proteosome subunit homolog [Dro... 233 6e-60
gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis] 233 6e-60
sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT 8 (18-56 PR... 233 8e-60
emb|CAA61864.1| (X89719) put. 26S protease subunit [Sus scrofa] 233 8e-60
pir||T43799 proteasome protein p45/SUG [imported] - rat (fragmen... 233 8e-60
emb|CAB55389.1| (AL117264) zwh0005.1 [Oryza sativa] 233 8e-60
gi|7110703 protease (prosome, macropain) 26S subunit, ATPase 5 [... 233 8e-60
sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B... 232 1e-59
sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOM... 232 1e-59
gb|AAF27916.1|AF220199_1 (AF220199) 26S proteasome regulatory su... 232 1e-59
gb|AAF56205.1| (AE003745) Pros26.4 gene product [Drosophila mela... 232 1e-59
pir||A44468 26S proteasome regulatory chain 4 [validated] - human 232 1e-59
gi|4506207 proteasome (prosome, macropain) 26S subunit, ATPase, ... 232 1e-59
gi|6679501 protease (prosome, macropain) 26S subunit, ATPase 1 [... 232 1e-59
sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >... 231 2e-59
pir||T27048 hypothetical protein Y49E10.1 - Caenorhabditis elega... 231 2e-59
emb|CAB51031.1| (AJ243811) l(3)70Da [Drosophila melanogaster] 231 2e-59
gb|AAF49760.1| (AE003536) l(3)70Da gene product [Drosophila mela... 231 2e-59
dbj|BAB17626.1| (AB033537) 26S proteasome regulatory particle tr... 231 2e-59
pir||T41400 probable peroxisome biosynthesis protein - fission y... 231 3e-59
gi|4506213 proteasome (prosome, macropain) 26S subunit, ATPase, ... 231 3e-59
sp|P72991|FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4 >gi|74... 231 3e-59
gb|AAF46146.1| (AE003437) Rpt4 gene product [Drosophila melanoga... 230 4e-59
sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (... 229 1e-58
pir||T33633 hypothetical protein F56F11.4 - Caenorhabditis elega... 228 2e-58
dbj|BAA33755.2| (AB017480) chloroplast FtsH protease [Nicotiana ... 228 2e-58
gb|AAF08391.1|AF145310_1 (AF145310) 26S proteasome regulatory co... 228 2e-58
gb|AAD24384.1|AC006081_20 (AC006081) 26S proteasome subunit 4 [A... 228 2e-58
pir||T36330 cell division protein ftsH2 - Streptomyces coelicolo... 228 2e-58
gb|AAB70882.1| (U77918) spermatogenic cell/sperm-associated Tat-... 227 3e-58
dbj|BAB10200.1| (AB023032) cell division protein FtsH [Arabidops... 227 3e-58
emb|CAC14432.1| (AJ291500) 26S proteasome subunit 4-like protein... 227 3e-58
gi|11434084 similar to proteasome (prosome, macropain) 26S subun... 227 4e-58
gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotu... 227 4e-58
pir||T44596 26S proteasome regulatory complex chain p50 [importe... 227 4e-58
gb|AAF35993.1|AC005836_5 (AC005836) 26S Protease Regulatory Subu... 227 4e-58
pir||T49960 FtsH-like protein F8M21.140 [similarity] - Arabidops... 227 4e-58
gb|AAF91246.1|AF227502_1 (AF227502) proteasome regulatory ATPase... 227 4e-58
emb|CAA11285.1| (AJ223384) 26S proteasome regulatory ATPase subu... 226 6e-58
pir||T08959 proteinase homolog F19B15.70 - Arabidopsis thaliana ... 226 6e-58
gb|AAF22522.1|AF123391_1 (AF123391) 26S proteasome AAA-ATPase su... 226 6e-58
gb|AAA85134.1| (U43720) Sug2p [Saccharomyces cerevisiae] 226 8e-58
sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDI... 226 8e-58
gi|6324833 ATPase; component of the 26S proteasome cap subunit; ... 226 8e-58
gi|6754410 katanin p60 (ATPase-containing) subunit A1 [Mus muscu... 226 8e-58
gi|11437005 proteasome (prosome, macropain) 26S subunit, ATPase,... 226 8e-58
gi|11467496 ORF 644 [Odontella sinensis] >gi|1706925|sp|P49825|F... 226 1e-57
gi|11467752 hypothetical chloroplast RF25 [Guillardia theta] >gi... 226 1e-57
gb|AAD50055.1|AC007980_20 (AC007980) ATP-dependent metalloprotea... 226 1e-57
sp|Q39102|FTSH_ARATH CELL DIVISION PROTEIN FTSH HOMOLOG PRECURSO... 225 1e-57
gi|6679503 proteasome (prosome, macropain) 26S subunit, ATPase 3... 225 1e-57
gi|4506215 proteasome (prosome, macropain) 26S subunit, ATPase, ... 225 2e-57
sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4 ... 224 2e-57
emb|CAA18796.1| (AL023093) cell division protein FtsH [Mycobacte... 224 2e-57
gi|4506211 proteasome (prosome, macropain) 26S subunit, ATPase, ... 224 4e-57
sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 224 4e-57
sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 223 7e-57
gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsi... 223 7e-57
sp|Q39444|FTSH_CAPAN CELL DIVISION PROTEIN FTSH HOMOLOG PRECURSO... 222 9e-57
sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 222 9e-57
gb|AAF22525.1|AF123394_1 (AF123394) 26S proteasome AAA-ATPase su... 222 9e-57
sp|P96942|FTSH_MYCTU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7478... 222 1e-56
sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 222 1e-56
sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 222 1e-56
gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional acti... 221 2e-56
gb|AAF08388.1|AF145307_1 (AF145307) 26S proteasome regulatory co... 221 3e-56
gb|AAD46145.1| (AF081573) 19S proteasome regulatory complex subu... 221 3e-56
gb|AAF49987.1| (AE003543) CG7257 gene product [Drosophila melano... 221 3e-56
gb|AAB42248.1| (U88170) Contains similarity to Pfam domain: PF00... 220 3e-56
emb|CAA73318.1| (Y12780) ATPase [Arabidopsis thaliana] 220 3e-56
sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROT... 220 3e-56
gb|AAF02852.1|AC009324_1 (AC009324) 26S proteasome ATPase subuni... 220 3e-56
pir||D82934 ATP-dependent zinc metallopeptidase, cell division p... 220 3e-56
pir||E82299 cell division protein FtsH VC0637 [imported] - Vibri... 220 3e-56
sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROT... 220 4e-56
pir||T48743 probable 26S ATP/ubiquitin-dependent proteinase chai... 220 4e-56
dbj|BAB17624.1| (AB033535) 26S proteasome regulatory particle tr... 220 4e-56
gb|AAC32257.1| (AF037269) cell division protein [Mycobacterium s... 220 6e-56
sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 219 8e-56
pir||T38636 tat binding homolog - fission yeast (Schizosaccharom... 219 1e-55
gi|4506209 proteasome (prosome, macropain) 26S subunit, ATPase, ... 218 2e-55
sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTE... 218 2e-55
gb|AAF91243.1|AF227499_1 (AF227499) proteasome regulatory ATPase... 218 2e-55
sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PRO... 217 3e-55
gb|AAF22521.1|AF123390_1 (AF123390) 26S proteasome AAA-ATPase su... 217 3e-55
gi|6320197 (putative) 26S protease subunit; Rpt2p [Saccharomyces... 217 5e-55
gb|AAA97498.1| (L17040) ATPase [Saccharomyces cerevisiae] 216 7e-55
gb|AAG38539.1|AF309805_4 (AF309805) putative 26S protease regula... 216 7e-55
gi|6320602 ATPase (AAA family) component of the 26S proteasome c... 216 9e-55
sp|P33298|PRS6_YEAST 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG ... 215 1e-54
sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7 ... 215 2e-54
gb|AAF52059.1| (AE003603) katanin-60 gene product [Drosophila me... 214 3e-54
gi|5802970 AFG3-like 2; ATPase family gene 3-like 2; ATPase fami... 213 4e-54
dbj|BAA21405.1| (AB004535) TAT-BINDING HOMOLOG 7. [Schizosacchar... 213 6e-54
pir||T02738 hypothetical protein T9I4.16 - Arabidopsis thaliana ... 212 1e-53
sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 >gi|7498868|pir||T207... 212 1e-53
gb|AAF34687.1|AF223064_1 (AF223064) putative microtubule severin... 212 2e-53
emb|CAC05251.1| (AL391604) putative mitochondrial respiratory ch... 211 3e-53
gb|AAB33476.1| Tat-binding protein alpha, DdTBP alpha=Tat-bindin... 210 4e-53
gb|AAF32452.1| (AC021640) cell division protein FtsH-like protei... 210 5e-53
gb|AAF29398.1|AC009999_18 (AC009999) Contains similarity to YTA7... 209 1e-52
gb|AAF79577.1|AC022464_35 (AC022464) F22G5.10 [Arabidopsis thali... 208 1e-52
gb|AAF91247.1|AF227503_1 (AF227503) proteasome regulatory ATPase... 206 7e-52
sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 206 1e-51
gb|AAG19908.1| (AE005074) cell division cycle protein; Cdc48e [H... 206 1e-51
pir||S39349 MSS1 protein homolog - mouse 205 1e-51
gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport g... 205 1e-51
gb|AAK41191.1| AAA family ATPase, p60 katanin [Sulfolobus solfat... 203 5e-51
dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa] 203 8e-51
gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis ... 201 2e-50
dbj|BAB01094.1| (AB026649) gene_id:MOJ10.20~unknown protein [Ara... 201 2e-50
gb|AAF76434.1|AC015445_1 (AC015445) Contains similarity to p60 k... 200 6e-50
gi|11230794 fidgetin-like 1 [Mus musculus] >gi|10442029|gb|AAG17... 197 4e-49
gi|6325281 Mitochondrial member of the CDC48/PAS1/SEC18 family o... 196 6e-49
emb|CAA56954.1| (X81067) probable mitochondrial protein; nearly ... 196 6e-49
emb|CAA54091.1| (X76643) Afg3p [Saccharomyces cerevisiae] 196 6e-49
dbj|BAA03839.1| (D16332) OSD1 gene product [Saccharomyces cerevi... 196 6e-49
gb|AAF51127.1| (AE003580) CG3326 gene product [Drosophila melano... 195 1e-48
gi|6320854 ATP-dependent metalloprotease; Afg3p [Saccharomyces c... 194 3e-48
gb|AAD31547.1|U53149_5 (U53149) Contains similarity to Pfam doma... 194 4e-48
gi|7305635 YME1-like 1 (S. cerevisiae); ATP-dependent metallopro... 193 7e-48
gb|AAD20962.1| (AF070656) FtsH homolog [Homo sapiens] 193 7e-48
gi|7657689 YME1 (S.cerevisiae)-like 1 [Homo sapiens] >gi|5689742... 193 7e-48
pir||T01303 hypothetical protein T14P8.7 - Arabidopsis thaliana ... 192 9e-48
emb|CAB99462.1| (AJ295618) putative ATPases [Homo sapiens] 192 9e-48
gb|AAF51954.1| (AE003601) CG1193 gene product [alt 2] [Drosophil... 191 3e-47
gb|AAF51955.1| (AE003601) CG1193 gene product [alt 1] [Drosophil... 191 3e-47
gi|6325183 Yta6p [Saccharomyces cerevisiae] >gi|2133218|pir||S61... 190 5e-47
gi|11545833 fidgetin-like 1 [Homo sapiens] >gi|10434929|dbj|BAB1... 190 5e-47
emb|CAB60143.1| (AJ246002) spastin protein orthologue [Mus muscu... 189 8e-47
gb|AAC68690.1| (AF088800) ARC [Rhodococcus erythropolis] 189 1e-46
gi|7662478 spastin [Homo sapiens] >gi|5689503|dbj|BAA83035.1| (A... 188 2e-46
emb|CAB60141.1| (AJ246001) spastin protein [Homo sapiens] >gi|62... 188 2e-46
sp|P46509|YL15_MYCLE PUTATIVE AAA-FAMILY ATPASE MLCB2533.12/A212... 187 4e-46
gb|AAF02877.1|AC009525_11 (AC009525) Unknown protein [Arabidopsi... 187 4e-46
pir||S37606 SEC18 protein - yeast (Candida albicans) 186 7e-46
sp|P34732|SC18_CANAL VESICULAR-FUSION PROTEIN SEC18 >gi|578124|e... 186 7e-46
sp|O33250|YL15_MYCTU PUTATIVE AAA-FAMILY ATPASE RV2115C >gi|7477... 185 1e-45
dbj|BAB11425.1| (AB010076) contains similarity to FtsH~gene_id:M... 183 5e-45
gb|AAC64282.1|AAC64282 (AF086832) ARC [Streptomyces coelicolor A... 183 6e-45
pir||T02901 MSP1 protein homolog T13J8.110 - Arabidopsis thalian... 183 6e-45
emb|CAB59501.1| (AL132648) AAA ATPase [Streptomyces coelicolor A... 183 6e-45
gb|AAF24564.1|AC007764_6 (AC007764) F22C12.12 [Arabidopsis thali... 183 6e-45
pir||T02996 N-ethylmaleimide sensitive fusion protein NSF - comm... 182 1e-44
sp|P46508|YME1_SCHMA YME1 PROTEIN HOMOLOG >gi|542453|pir||S42826... 181 3e-44
pir||E64486 ATP-dependent 26S proteosome regulatory subunit 8 ho... 180 5e-44
sp|Q58889|PRS2_METJA PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 180 5e-44
pir||T49647 MSP1 related protein [imported] - Neurospora crassa ... 180 7e-44
emb|CAB81033.1| (AL161502) putative component of vesicle-mediate... 179 9e-44
pir||T40781 26S proteinase subunit - fission yeast (Schizosaccha... 177 5e-43
gb|AAD17345.1| (AF128393) similar to N-ethylmaleimide sensitive ... 176 1e-42
dbj|BAB14017.1| (AK022348) unnamed protein product [Homo sapiens] 174 4e-42
gi|11431097 YME1 (S.cerevisiae)-like 1 [Homo sapiens] 173 5e-42
emb|CAB95432.1| (AL359782) possible n-ethylmaleimide sensitive f... 171 3e-41
gb|AAF52903.1| (AE003628) CG5395 gene product [Drosophila melano... 162 1e-38
gi|11498884 cell division control protein, AAA family, putative ... 151 3e-35
emb|CAB58003.1| (AL121800) BACN5I9.i [Drosophila melanogaster] >... 147 4e-34
emb|CAB58013.1| (AL121800) BACN5I9.gs.8 [Drosophila melanogaster] 147 4e-34
sp|O27092|PRS2_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 139 1e-31
dbj|BAA83371.1| (AP000391) Similar to Arabidopsis thaliana chrom... 139 1e-31
sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 138 2e-31
pir||T00863 hypothetical protein F17K2.3 - Arabidopsis thaliana ... 133 8e-30
gb|AAG28839.1| (U59880) filamentation temperature sensitive H-li... 118 3e-25
pdb|1CZ4|A Chain A, Nmr Structure Of Vat-N: The N-Terminal Domai... 110 5e-23
pir||S57269 hypothetical protein 115 - Sulfolobus solfataricus >... 107 4e-22
pir||T22612 hypothetical protein F54B3.3 - Caenorhabditis elegan... 76 1e-12
>pir||F75154 cell division control protein 48, aaa family (cdc48-1) PAB2086 -
Pyrococcus abyssi (strain Orsay)
>gi|5457827|emb|CAB49317.1| (AJ248284) CELL DIVISION
CONTROL PROTEIN 48, AAA FAMILY (CDC48-1) [Pyrococcus
abyssi]
Length = 795
Score = 1566 bits (4009), Expect = 0.0
Identities = 795/795 (100%), Positives = 795/795 (100%)
Query: 1 MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE 60
MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE
Sbjct: 1 MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE 60
Query: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERL 120
DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERL
Sbjct: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERL 120
Query: 121 VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVT 180
VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVT
Sbjct: 121 VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVT 180
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA
Sbjct: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK
Sbjct: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ
Sbjct: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL
Sbjct: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV
Sbjct: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE
Sbjct: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE
Sbjct: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATN 660
IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATN
Sbjct: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATN 660
Query: 661 RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 720
RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG
Sbjct: 661 RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 720
Query: 721 ADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
ADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM
Sbjct: 721 ADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
Query: 781 EYYRKIQEQFKQARG 795
EYYRKIQEQFKQARG
Sbjct: 781 EYYRKIQEQFKQARG 795
>pir||B71196 probable transitional endoplasmic reticulum ATPase - Pyrococcus
horikoshii >gi|3258278|dbj|BAA30961.1| (AP000007) 798aa
long hypothetical transitional endoplasmic reticulum
ATPase [Pyrococcus horikoshii]
Length = 798
Score = 1477 bits (3782), Expect = 0.0
Identities = 732/795 (92%), Positives = 776/795 (97%)
Query: 1 MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE 60
M EKKE+KLKVASAYQRDVGRGIVR+DR++MRELG+SPGDVVEIIGTKNTAAI WPAYPE
Sbjct: 4 MVEKKEIKLKVASAYQRDVGRGIVRIDRRSMRELGVSPGDVVEIIGTKNTAAIVWPAYPE 63
Query: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERL 120
DEGLGIIRMDGTIRKNAGVGLGDEVT+RKA+V+EA+KV LAPTEPIRFGRDFVEWLHERL
Sbjct: 64 DEGLGIIRMDGTIRKNAGVGLGDEVTIRKADVKEARKVVLAPTEPIRFGRDFVEWLHERL 123
Query: 121 VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVT 180
VGRPVVRGDYIK+GVLGQELTFVVT TQPSGVVQITE+TDF+ISEKPVKEVEKRMTTGVT
Sbjct: 124 VGRPVVRGDYIKIGVLGQELTFVVTTTQPSGVVQITEYTDFDISEKPVKEVEKRMTTGVT 183
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA
Sbjct: 184 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 243
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAP+IIFIDEIDAIAPKRSEVTGEVEK
Sbjct: 244 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPSIIFIDEIDAIAPKRSEVTGEVEK 303
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
RVVAQLLALMDGLK RGKVIVIGATNRPDA+DPALRRPGRFDREIEVGVPD+QGRKEILQ
Sbjct: 304 RVVAQLLALMDGLKGRGKVIVIGATNRPDALDPALRRPGRFDREIEVGVPDKQGRKEILQ 363
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
IHTRGMPIEPDFRK+DVLKILE K+EGKF +IDKAI+ V K E++IP+VLK+++ EL
Sbjct: 364 IHTRGMPIEPDFRKEDVLKILEGLKKEGKFRDVIDKAIDRVMKVSEDDIPKVLKELNGEL 423
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
Y+EV+TRL+D LL+ELA+VTHGFVGADLAALAREAAMAALRRLI+EGKIDFEAETIPREV
Sbjct: 424 YEEVRTRLVDLLLEELAEVTHGFVGADLAALAREAAMAALRRLIKEGKIDFEAETIPREV 483
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
LDELKVTR+DFYEALKMVEPSALREVLIEVPNVHWDDIGGLE+VKQELREAVEWPLKYPE
Sbjct: 484 LDELKVTRKDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEEVKQELREAVEWPLKYPE 543
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
AF+AYGITPPKG+LLYGPPGTGKTLLAKAVATES+ANFIAVRGPE+LSKWVGESEKNIRE
Sbjct: 544 AFRAYGITPPKGVLLYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKNIRE 603
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATN 660
IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDR+INQLLTEMDGIQEN GVVVIAATN
Sbjct: 604 IFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENTGVVVIAATN 663
Query: 661 RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 720
RPDILDPALLRPGRFDRLILVPAPDE+ARFEIFKVHTR MPLADDVDL+ELARRTEGYTG
Sbjct: 664 RPDILDPALLRPGRFDRLILVPAPDEEARFEIFKVHTRSMPLADDVDLRELARRTEGYTG 723
Query: 721 ADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
ADIAAVCREAAMIAMR+ALEKGIIKPGMKA EI++ AKVTMKDFEEAL+KIGPSVSKETM
Sbjct: 724 ADIAAVCREAAMIAMRKALEKGIIKPGMKADEIKQKAKVTMKDFEEALKKIGPSVSKETM 783
Query: 781 EYYRKIQEQFKQARG 795
EYYRKIQEQFKQARG
Sbjct: 784 EYYRKIQEQFKQARG 798
>pir||D75046 transitional endoplasmic reticulum atpase PAB1478 - Pyrococcus
abyssi (strain Orsay) >gi|5458778|emb|CAB50265.1|
(AJ248287) TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
[Pyrococcus abyssi]
Length = 840
Score = 1144 bits (2928), Expect = 0.0
Identities = 604/827 (73%), Positives = 679/827 (82%), Gaps = 41/827 (4%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K E+KL+VA A +RDVGRGIVR DRK R +G+ PGD+VEI G + TAAI +P+D
Sbjct: 9 QKDEIKLRVAEALKRDVGRGIVRFDRKYQRMIGVEPGDIVEIEGERITAAIVANPHPDDR 68
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEP---IRFGRDFVEWLHER 119
GL IIRMDG IRKNAGV +GD VT+R+AEV+EAKKV LAP + ++ D V+
Sbjct: 69 GLDIIRMDGYIRKNAGVTIGDFVTIRRAEVKEAKKVVLAPAQKGVIVQIPGDIVK---NN 125
Query: 120 LVGRPVVRGDYIKVGVLGQ-------------------------ELTFVVTATQPSGVVQ 154
L+GRPVV+GD I + EL F+V T P G+VQ
Sbjct: 126 LLGRPVVKGDIIVASGRSEMYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQ 185
Query: 155 ITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIE 214
IT T+ + + V EV + VTYEDIGGLK+ IEKIREM+ELPLKHPELFE+LGIE
Sbjct: 186 ITYNTEVEVLPQAV-EVREEKIPEVTYEDIGGLKEAIEKIREMVELPLKHPELFERLGIE 244
Query: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE+FKEAEEN
Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
Query: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPA 334
APAIIFIDEIDAIAPKR EV GEVEKRVV+QLL LMDGLKSRGKVIVI ATNRPDA+DPA
Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPA 364
Query: 335 LRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKI- 393
LRRPGRFDREIEVGVPD+QGRKEILQIHTRGMPIEPDF K+ V+K L++ +++ +F K
Sbjct: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEK 424
Query: 394 IDKAIEEVNKSK-EEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALA 452
I K IE+V+K+K EEEI +L++ D LY EV+T+LIDKLLDELA+VTHGFVGADLAALA
Sbjct: 425 IKKIIEKVSKAKSEEEIKDILRE-DRNLYIEVRTKLIDKLLDELAEVTHGFVGADLAALA 483
Query: 453 REAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPN 512
REAAM LRRLI+EGKI+ EAETIPREVL+ELKVT+ DFYEALKMVEPSALREVLIEVPN
Sbjct: 484 REAAMVVLRRLIKEGKINPEAETIPREVLEELKVTKADFYEALKMVEPSALREVLIEVPN 543
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
VHWDDIGGLEDVKQELREAVEWPLKYP+AFK GITPPKG+LLYGPPGTGKTLLAKAVAT
Sbjct: 544 VHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT-DVNR 631
ESQANFIA+RGPE+LSKWVGESEK IREIFRKARQA+P +IFIDEIDAIAP RGT + +
Sbjct: 604 ESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPARGTAEGEK 663
Query: 632 VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 691
VTDRIINQLLTEMDG+ EN+GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE
Sbjct: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 723
Query: 692 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM A+RRA+ K + P
Sbjct: 724 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMNALRRAVAK--LSPEELEE 781
Query: 752 EIRRLAK---VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
E + K VT KDFE AL+K+ PSV+K MEYYR+ +E K+ G
Sbjct: 782 ESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQFEESRKRMVG 828
>pir||H71114 probable cell division control protein (transitional endoplasmic
reticulum ATPase) - Pyrococcus horikoshii
>gi|3257095|dbj|BAA29778.1| (AP000003) 840aa long
hypothetical cell division control protein (transitional
endoplasmic reticulum ATPase) [Pyrococcus horikoshii]
Length = 840
Score = 1140 bits (2916), Expect = 0.0
Identities = 595/826 (72%), Positives = 683/826 (82%), Gaps = 39/826 (4%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K+E+KL+VA A +RDVGRGIVR DR+ + +G+ PGD+VEI G + TAAI ++P+D+
Sbjct: 9 QKEEIKLRVAEALKRDVGRGIVRFDRRYQKMIGVEPGDIVEIEGERVTAAIVANSHPDDK 68
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEP---IRFGRDFVEWLHER 119
GL IIRMDG IRKNAGV +GD VT+R+A+V+EAKKV LAP + ++ D ++
Sbjct: 69 GLDIIRMDGYIRKNAGVSIGDYVTIRRAQVKEAKKVVLAPAQKGVIVQIPGDIIK---NN 125
Query: 120 LVGRPVVRGDYIKVGVLGQ-------------------------ELTFVVTATQPSGVVQ 154
L+GRPVV+GD + G EL F+V T P G+VQ
Sbjct: 126 LLGRPVVKGDIVVASGRGDLYYSSGTPFDEIFRGFFEAMSVGFGELKFMVVNTIPKGIVQ 185
Query: 155 ITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIE 214
IT T+ + + V EV + VTYEDIGGLK+ I+KIREM+ELPLKHPELFE+LGIE
Sbjct: 186 ITYNTEVEVLPQAV-EVREEKIPEVTYEDIGGLKEAIQKIREMVELPLKHPELFERLGIE 244
Query: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLRE+FKEAEEN
Sbjct: 245 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREIFKEAEEN 304
Query: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPA 334
APAIIFIDEIDAIAPKR EV GEVEKRVV+QLL LMDGLK RGKVIVIGATNRPDA+DPA
Sbjct: 305 APAIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIGATNRPDALDPA 364
Query: 335 LRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTK-I 393
LRRPGRFDREIEVGVPD+QGRKEILQIHTRGMPIEPDF KD V+K+L+D +++ +F K
Sbjct: 365 LRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPIEPDFEKDAVIKVLKDLEKDERFEKEK 424
Query: 394 IDKAIEEVNK-SKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALA 452
I+K IE+V+K + E+EI ++LK+ D +Y EV+ RLIDKLL+ELA+VTHGFVGADLAALA
Sbjct: 425 IEKIIEKVSKANSEDEIKEILKE-DGNVYVEVRNRLIDKLLEELAEVTHGFVGADLAALA 483
Query: 453 REAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPN 512
REAAM LRRLI EGKI+ EAE+IPREVL+ELKVT+RDFYEALKMVEPSALREVLIEVPN
Sbjct: 484 REAAMVVLRRLINEGKINPEAESIPREVLEELKVTKRDFYEALKMVEPSALREVLIEVPN 543
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
VHWDDIGGLE+VKQELREAVEWPLKYP+AFK GITPPKG+LLYGPPGTGKTLLAKAVAT
Sbjct: 544 VHWDDIGGLEEVKQELREAVEWPLKYPKAFKKLGITPPKGVLLYGPPGTGKTLLAKAVAT 603
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT-DVNR 631
ES+ANFIAVRGPE+LSKWVGESEK IREIFRKARQAAP +IFIDEIDAIAP RGT + +
Sbjct: 604 ESEANFIAVRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDAIAPARGTSEGEK 663
Query: 632 VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 691
VTDRIINQLLTEMDG+ EN+GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE+ARFE
Sbjct: 664 VTDRIINQLLTEMDGLVENSGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEEARFE 723
Query: 692 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
IFKVHTR MPLADDVDL+ELARRTEGYTGADIAAVCREAA+ A+RR + K + K ++
Sbjct: 724 IFKVHTRSMPLADDVDLRELARRTEGYTGADIAAVCREAALNALRRVV-KSVPKEKLEEE 782
Query: 752 EIRRLAK--VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
L K VT KDFEEAL+K+ PSVSK MEYYR+ +E K+ G
Sbjct: 783 SEEFLNKLVVTRKDFEEALKKVKPSVSKYMMEYYRQFEEARKRVSG 828
>dbj|BAA87866.1| (AB018433) Pk-cdcA [Pyrococcus kodakaraensis]
Length = 835
Score = 1106 bits (2829), Expect = 0.0
Identities = 575/817 (70%), Positives = 664/817 (80%), Gaps = 31/817 (3%)
Query: 6 EVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLG 65
E+KL+VA A +RDVGRGIVR DRK R+LG+ PGD+V + G + TAAI A+P+D GL
Sbjct: 12 EIKLRVAEALKRDVGRGIVRFDRKYQRKLGVEPGDIVALKGERVTAAIVANAHPDDRGLD 71
Query: 66 IIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRPV 125
IIRMDG IR+NAGV +GD VTV +AEV+EAKKV LAP + F + E + + L+GRPV
Sbjct: 72 IIRMDGYIRRNAGVSIGDYVTVSRAEVQEAKKVVLAPAQKGVFIQIPGEIVKQNLLGRPV 131
Query: 126 VRGDYIKVGVLGQ----------------------ELTFVVTATQPSGVVQITEFTDFNI 163
V+GD + G + EL FVV T P G+VQIT T+ +
Sbjct: 132 VKGDLVVAGGQNEAVYSPFDELLRGFFEAMPIGFGELKFVVVNTVPKGIVQITYNTEVEV 191
Query: 164 SEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYG 223
+ V EV++ VTYEDIGGL D I+KIREM+ELPLKHPELFE+LGIEPPKGVLLYG
Sbjct: 192 LPQAV-EVKEESIPEVTYEDIGGLSDAIQKIREMVELPLKHPELFERLGIEPPKGVLLYG 250
Query: 224 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDE 283
PPGTGKTLLAKAVANEANA+FIAINGPEIMSK+YGESEERLRE+FKEAEENAP+IIFIDE
Sbjct: 251 PPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDE 310
Query: 284 IDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDR 343
IDAIAPKR EV GEVEKRVV+QLL LMDGLKSRGKVIVI ATNRPDA+DPALRRPGRFDR
Sbjct: 311 IDAIAPKREEVVGEVEKRVVSQLLTLMDGLKSRGKVIVIAATNRPDALDPALRRPGRFDR 370
Query: 344 EIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKF-TKIIDKAIEEVN 402
EIEVGVPD+QGRKEILQIHTRGMP+EPD+ K+ VL++L + + +G F + +DK I EV
Sbjct: 371 EIEVGVPDKQGRKEILQIHTRGMPLEPDYDKEAVLRVLREIREKGNFDAERVDKIIAEVE 430
Query: 403 KSKEE-EIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALR 461
+K E E+ + LKK DAE+Y EV+ RLIDK+LDELA+VTHGFVGADLAALAREAAM LR
Sbjct: 431 NAKNESEVKEALKK-DAEIYSEVRNRLIDKMLDELAEVTHGFVGADLAALAREAAMVVLR 489
Query: 462 RLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGL 521
RLI+EGKI E E IP EVL EL+V R DFYEALKMVEPSALREVLIEVPNV W+DIGGL
Sbjct: 490 RLIKEGKISPEQERIPPEVLQELRVRRDDFYEALKMVEPSALREVLIEVPNVRWEDIGGL 549
Query: 522 EDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAV 581
EDVKQELREAVEWPLKYP+AF+ GI PPKGILLYGPPGTGKTLLAKAVA ESQANFIA+
Sbjct: 550 EDVKQELREAVEWPLKYPKAFERLGIEPPKGILLYGPPGTGKTLLAKAVANESQANFIAI 609
Query: 582 RGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLL 641
RGPE+LSKWVGE+EK IREIFRKARQAAPTV+FIDEIDAIAP RG++ +RVTDR+INQLL
Sbjct: 610 RGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPARGSEGDRVTDRLINQLL 669
Query: 642 TEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMP 701
TEMDGIQEN+GVVVI ATNRPDI+DPALLRPGRFDRLILVPAPDEKAR EIFKVHTR +P
Sbjct: 670 TEMDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRRVP 729
Query: 702 LADDVDLKELARRTEGYTGADIAAVCREAAMIAMR---RALEKGIIKPGMKASEIRRLAK 758
LA DVDL+ELA++TEGYTGADIAA+ REAA+IAMR R L + +++ ++ E K
Sbjct: 730 LAGDVDLRELAKKTEGYTGADIAALVREAALIAMRRIMRELPREVVE--SESEEFLERLK 787
Query: 759 VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
V+ KDFE A++K+ PSV+ MEYYR +E K+ G
Sbjct: 788 VSKKDFEMAMKKVKPSVTPYMMEYYRSFEENRKKQAG 824
>gi|11499681 cell division control protein 48, AAA family (cdc48-2)
[Archaeoglobus fulgidus] >gi|7435750|pir||B69512 cell
division control protein 48, AAA family (cdc48-2)
homolog - Archaeoglobus fulgidus
>gi|2648442|gb|AAB89157.1| (AE000959) cell division
control protein 48, AAA family (cdc48-2) [Archaeoglobus
fulgidus]
Length = 811
Score = 907 bits (2319), Expect = 0.0
Identities = 468/815 (57%), Positives = 592/815 (72%), Gaps = 38/815 (4%)
Query: 1 MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE 60
M + E+ LKV AY D GRGI RLD TM +L ISPGD++EI G + T A W A
Sbjct: 1 MGDNMEITLKVNQAYPSDSGRGIARLDPDTMLKLQISPGDIIEIEGARKTVAKVWRAPKR 60
Query: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIR---FGRDFVEWLH 117
D G IIR+D IR+NAGVG+GD V VRK E + AK V LAP + + +G D E+L
Sbjct: 61 DWGKNIIRIDRFIRENAGVGVGDVVKVRKVEYQPAKTVILAPLKKMDLRIYGVDIGEYLK 120
Query: 118 ERLVGRPVVRGDYI------------KVGVLGQELTFVVTATQPSGVVQITEFTDFNISE 165
+ + RPVV GD + + Q + FV T+P G V I E T +
Sbjct: 121 HQFLKRPVVEGDLVPLVGSPALSGFGRYNQQNQAVVFVAVKTEPKGPVVIDETTKVVYRD 180
Query: 166 KPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPP 225
+P K E+ G+TYEDIGGLK+ ++K+RE+IELPL++PELF++LGIEPPKGVLLYGPP
Sbjct: 181 RPAKGFERFGKAGITYEDIGGLKEELQKVREVIELPLRYPELFQRLGIEPPKGVLLYGPP 240
Query: 226 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEID 285
GTGKTL+AKAVANE A F INGPEIMSK+YGESE+RLRE+F+EA+ENAP+IIFIDEID
Sbjct: 241 GTGKTLIAKAVANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKENAPSIIFIDEID 300
Query: 286 AIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREI 345
+IAPKR EVTGEVE+RVVAQLL LMDGL+ RG+VIVIGATNR DA+DPALRRPGRFDREI
Sbjct: 301 SIAPKREEVTGEVERRVVAQLLTLMDGLEERGQVIVIGATNRIDAVDPALRRPGRFDREI 360
Query: 346 EVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKR---EGKFTKIIDKAIEEV- 401
E+GVPDR+GR EI QIHTR MP+E + ++ VL +E FKR + + K +D +E+
Sbjct: 361 EIGVPDREGRYEIFQIHTRNMPLEAKYSREFVLDAIERFKRQVDDPELIKNLDFLYDEIK 420
Query: 402 NKSKEEEIPQVLKK-IDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAAL 460
N EEE+ +K + E+ DE++ + +L LAD THGFVGAD+ AL +EAAM AL
Sbjct: 421 NSETEEEVKGAVKNLLPQEVIDELEVEITKAMLRSLADQTHGFVGADIEALCKEAAMKAL 480
Query: 461 RRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGG 520
RR + + ID + IP E+L+ ++VT DF +AL+ +EPSA+REV +E+P V W+D+GG
Sbjct: 481 RRYLPQ--IDLNEDEIPIELLESIRVTWDDFMDALREIEPSAMREVFVEIPKVTWNDVGG 538
Query: 521 LEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIA 580
LEDVK+E+ EAVEWPLKYPE FK +GI PPKG+LLYGPPGTGKTL+AKAVA ES+ANFI+
Sbjct: 539 LEDVKREIIEAVEWPLKYPEKFKKFGIKPPKGVLLYGPPGTGKTLIAKAVANESEANFIS 598
Query: 581 VRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV-NRVTDRIINQ 639
++G +ILSKW+GESEK +R+IFRKARQ AP +IF DEIDAIA RG D +R +R++NQ
Sbjct: 599 IKGGQILSKWLGESEKAVRKIFRKARQVAPCIIFFDEIDAIAQMRGIDEGSRAVERVLNQ 658
Query: 640 LLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 699
LLTEMDG++E GVVVI ATNRPDILDPALLRPGRFDR++ V PD+K+R IFK+HTR
Sbjct: 659 LLTEMDGLEELHGVVVIGATNRPDILDPALLRPGRFDRMVYVRPPDKKSRLAIFKIHTRD 718
Query: 700 MPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKV 759
MPL++DVDL+ELA TEGY GADI A+CREA M+A+R + KV
Sbjct: 719 MPLSEDVDLEELADLTEGYVGADIEAICREAVMLAIRENI---------------NAEKV 763
Query: 760 TMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQAR 794
M+ F EAL+KI PSV++ + +Y + +E+ + R
Sbjct: 764 EMRHFLEALKKIKPSVNEAMLNFYERFEEKMRTER 798
>gi|11498895 cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus] >gi|7435749|pir||H69411 cell
division control protein 48, AAA family (cdc48-1)
homolog - Archaeoglobus fulgidus
>gi|2649281|gb|AAB89948.1| (AE001014) cell division
control protein 48, AAA family (cdc48-1) [Archaeoglobus
fulgidus]
Length = 733
Score = 906 bits (2316), Expect = 0.0
Identities = 471/797 (59%), Positives = 584/797 (73%), Gaps = 76/797 (9%)
Query: 1 MAEKK--EVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAY 58
M++KK E+ L+VA A+ RDVGRG+ R+D M + G+ GD++EIIG AI WP+Y
Sbjct: 1 MSDKKGEEITLRVAEAFYRDVGRGVARIDPAVMEKYGLQSGDIIEIIGKSTVPAIVWPSY 60
Query: 59 PEDEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHE 118
PED G GIIR+DG+IR NAGVG+ D+V +RK + A+KVTLAPTEP+R +L
Sbjct: 61 PEDRGTGIIRIDGSIRSNAGVGIDDKVRIRKVTAKPAEKVTLAPTEPVRL-MGGEAYLLR 119
Query: 119 RLVGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTG 178
L GRPV++G I+V V G LTFV+TAT+PSGVV +T T + EKP +EV KR
Sbjct: 120 LLEGRPVIKGQKIRVEVFGHTLTFVITATRPSGVVVVTRNTAIELKEKPAEEV-KRAVPD 178
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTYEDIGGLK + +REMIELPLKHPELF++LGIEPPKGVLLYGPPGTGKTL+AKAVAN
Sbjct: 179 VTYEDIGGLKRELRLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVAN 238
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
E +A+FI I+GPEIMSKYYGESE+RLRE+F+EA+ENAP+IIFIDEID+IAPKR EVTGEV
Sbjct: 239 EVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEV 298
Query: 299 EKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEI 358
E+RVVAQLLALMDGL++RG VIVI ATNRPDAIDPALRRPGRFDREIE+GVPD++GRKEI
Sbjct: 299 ERRVVAQLLALMDGLEARGDVIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEI 358
Query: 359 LQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNK-SKEEEIPQVLKKID 417
L+IHTR MP+ D +++ ++ F + +E + K + + +VL +ID
Sbjct: 359 LEIHTRKMPLAEDVDLEELAELTNGF---------VGADLEALCKEAAMHALRRVLPEID 409
Query: 418 AELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIP 477
E +E+ +I+ L
Sbjct: 410 IEA-EEIPAEVIENL--------------------------------------------- 423
Query: 478 REVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLK 537
KVTR DF EALK +EPSA+REVL+EVPNV W+DIGGLE KQEL EAVEWPLK
Sbjct: 424 -------KVTREDFMEALKNIEPSAMREVLVEVPNVKWEDIGGLEHAKQELMEAVEWPLK 476
Query: 538 YPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKN 597
YPE F+A I PP+GILL+GPPGTGKTLLAKAVA ES ANFI+V+GPE+LSKWVGESEK+
Sbjct: 477 YPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKH 536
Query: 598 IREIFRKARQAAPTVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTEMDGIQENAGVVVI 656
+RE+FRKARQ AP VIF DEID++APRR G + VT+R+++QLLTE+DG++E VVVI
Sbjct: 537 VREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGLEELKDVVVI 596
Query: 657 AATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTE 716
AATNRPD++DPALLRPGR +R I +P PD+KAR EIFK+H RG PLADDV+++ELA +TE
Sbjct: 597 AATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTE 656
Query: 717 GYTGADIAAVCREAAMIAMRRALEKGIIKPGM---KASEIRRLAKVTMKDFEEALRKIGP 773
GY+GADI AVCREA M+A+R +IKPGM +A E + K+T K FEEAL+K+ P
Sbjct: 657 GYSGADIEAVCREAGMLAIRE-----LIKPGMTREEAKEAAKKLKITKKHFEEALKKVRP 711
Query: 774 SVSKETMEYYRKIQEQF 790
S++KE +E Y K+ E F
Sbjct: 712 SLTKEDVEKYEKLIEDF 728
>sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ1156
>gi|2118117|pir||C64444 cell division control protein
CDC48 homolog - Methanococcus jannaschii
>gi|1591785|gb|AAB99153.1| (U67557) cell division
control protein 48 (cdc48), AAA family [Methanococcus
jannaschii]
Length = 903
Score = 873 bits (2230), Expect = 0.0
Identities = 447/736 (60%), Positives = 548/736 (73%), Gaps = 63/736 (8%)
Query: 8 KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTA-AIAWPAYPEDEGLGI 66
+LKVA AYQ DVGRGI R+D TM ELG+ PGDV+EI G K A AI + + ED G GI
Sbjct: 4 ELKVAEAYQGDVGRGIARIDPYTMEELGLKPGDVIEIEGPKGKAYAIVYRGFLEDAGKGI 63
Query: 67 IRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRPVV 126
IR+DG +R+NAGV +GD V V++ E++EAKKV LAPT+PIRFG F +++ +++G+ +
Sbjct: 64 IRIDGYLRQNAGVAIGDRVKVKRVEIKEAKKVVLAPTQPIRFGPGFEDFVKRKILGQVLS 123
Query: 127 RGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGG 186
+G + +GVLG LTFVV +T P+G V++T+FT + E+PV E+++ VTYEDIGG
Sbjct: 124 KGSKVTIGVLGTALTFVVVSTTPAGPVRVTDFTHVELKEEPVSEIKETKVPDVTYEDIGG 183
Query: 187 LKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIA 246
LK+ ++K+REMIELP++HPELFEKLGIEPPKGVLL GPPGTGKTLLAKAVANEA A F
Sbjct: 184 LKEEVKKVREMIELPMRHPELFEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYV 243
Query: 247 INGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQL 306
INGPEIMSKY GE+EE LR++F+EAEENAP+IIFIDEIDAIAPKR E TGEVE+R+VAQL
Sbjct: 244 INGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLVAQL 303
Query: 307 LALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGM 366
L LMDGLK RG+V+VIGATNRP+A+DPALRRPGRFDREI +GVPDR+GRKEILQIHTR M
Sbjct: 304 LTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNM 363
Query: 367 PIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKT 426
P+ D D + + F + A+ + + VL ID E +E+
Sbjct: 364 PLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRR--------VLPSIDLEA-EEIPK 414
Query: 427 RLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKV 486
++D L KV
Sbjct: 415 EVLDNL----------------------------------------------------KV 422
Query: 487 TRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYG 546
T DF EALK VEPSA+REVL+EVPNV W+DIGGLE+VKQELREAVEWPLK E F+ G
Sbjct: 423 TMDDFKEALKDVEPSAMREVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIG 482
Query: 547 ITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKAR 606
+ PPKG+LL+GPPGTGKTLLAKAVA ES ANFI+V+GPEI SKWVGESEK IREIFRKAR
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKAR 542
Query: 607 QAAPTVIFIDEIDAIAPRRGTDV-NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
Q+AP +IF DEIDAIAP+RG D+ + VTD+++NQLLTE+DG++E VVVIAATNRPDI+
Sbjct: 543 QSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNRPDII 602
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
DPALLRPGR DR+ILVP PDEKAR +IFK+HTR M LA+DV+L+ELA++TEGYTGADI A
Sbjct: 603 DPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEA 662
Query: 726 VCREAAMIAMRRALEK 741
+CREAAM+A+R ++ K
Sbjct: 663 LCREAAMLAVRESIGK 678
Score = 309 bits (782), Expect = 1e-82
Identities = 166/359 (46%), Positives = 231/359 (64%), Gaps = 26/359 (7%)
Query: 422 DEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVL 481
D VK +++ ++L + + VT G +G L + A R+ DF + E +
Sbjct: 111 DFVKRKILGQVLSKGSKVTIGVLGTALTFVVVSTTPAGPVRVT-----DFTHVELKEEPV 165
Query: 482 DELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEA 541
E+K T+ VP+V ++DIGGL++ +++RE +E P+++PE
Sbjct: 166 SEIKETK---------------------VPDVTYEDIGGLKEEVKKVREMIELPMRHPEL 204
Query: 542 FKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREI 601
F+ GI PPKG+LL GPPGTGKTLLAKAVA E+ ANF + GPEI+SK+VGE+E+N+R+I
Sbjct: 205 FEKLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKI 264
Query: 602 FRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNR 661
F +A + AP++IFIDEIDAIAP+R V R++ QLLT MDG++ VVVI ATNR
Sbjct: 265 FEEAEENAPSIIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNR 324
Query: 662 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGA 721
P+ LDPAL RPGRFDR I++ PD + R EI ++HTR MPLA+DVDL LA T G+ GA
Sbjct: 325 PNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGA 384
Query: 722 DIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
D+AA+C+EAAM A+RR L ++ E+ KVTM DF+EAL+ + PS +E +
Sbjct: 385 DLAALCKEAAMRALRRVLPSIDLEAEEIPKEVLDNLKVTMDDFKEALKDVEPSAMREVL 443
>sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase - Sulfolobus
acidocaldarius >gi|310600|gb|AAA72002.1| (L17042) ATPase
[Sulfolobus acidocaldarius]
Length = 780
Score = 834 bits (2130), Expect = 0.0
Identities = 445/807 (55%), Positives = 564/807 (69%), Gaps = 82/807 (10%)
Query: 5 KEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIA--WPAYP--E 60
+ +K +V A QRDVG+ + R+ +MR+L + GD +EIIG +A+A PAY +
Sbjct: 36 QSIKFRVTEARQRDVGKKVARISETSMRKLNVEAGDYIEIIGQDGNSALAQVMPAYDISD 95
Query: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERL 120
DE IR+DG IRK+ VG+GD+VTVRK V A KV LAPT+PIRF FVE++ + L
Sbjct: 96 DE----IRIDGYIRKSIKVGIGDDVTVRKTNVSPASKVVLAPTQPIRFDNSFVEYVKDTL 151
Query: 121 VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVT 180
+ +P+ +G+ + + + L V TQPS V +T T+ I E+PVKE V+
Sbjct: 152 MDKPLAKGETLPIPIYTGTLELTVVNTQPSNYVYVTGSTNIEIREEPVKESSLAYPK-VS 210
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
+EDIG L++ +KIRE++E P++HPELF++LGI+PPKG+LLYGPPGTGKTLLA+A+ NE
Sbjct: 211 WEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALRNEI 270
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
AYFI +NGPEIMSK+YGESE+R+RE+FKEAEENAP+IIFIDEIDAIAPKR +VTGEVEK
Sbjct: 271 GAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSIIFIDEIDAIAPKREDVTGEVEK 330
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
RVVAQLL LMDG+K RG+VIVIGATNRPDAIDPALRRPGRFDREIE+ PD +G
Sbjct: 331 RVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKG------ 384
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
RKD IL+ R T +D
Sbjct: 385 ------------RKD----ILQVHTRNMPITDDVD------------------------- 403
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
LD+LA++T+G+ GADLAALA+EAA+ ALRR + E K++ + TIP E+
Sbjct: 404 ------------LDKLAEMTYGYTGADLAALAKEAAIYALRRFVDEKKLNLDQPTIPAEI 451
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
+ ELKV+ DF ALK ++PS LREV +EVP V+W+DIGGL++VKQ+LREAVEWPL++PE
Sbjct: 452 IKELKVSMNDFLNALKSIQPSLLREVYVEVPKVNWNDIGGLDNVKQQLREAVEWPLRFPE 511
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
F G+TPPKGILL+GPPGTGKT+LAKAVATES ANFIAVRGPEILSKWVGESEK IRE
Sbjct: 512 LFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIRE 571
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDVNR-VTDRIINQLLTEMDGIQENAGVVVIAAT 659
IFRKARQAAPTVIF DEID+IAP RG + VT+RI+NQLL EMDGI VV+IAAT
Sbjct: 572 IFRKARQAAPTVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLNKVVIIAAT 631
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
NRPDILDPALLRPGRFDRLI VP PD+ ARFEI KVHT+ +PLA+DV L+++A + EGYT
Sbjct: 632 NRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEGYT 691
Query: 720 GADIAAVCREAAMIAMRRALE----------KG---IIKPGMKASEIRRLAKVTMKDFEE 766
GAD+ A+ REA + AMR KG + +K + KV+ +DFE+
Sbjct: 692 GADLEALVREATINAMRSIYSMCDKQSRDECKGNMECYQKHIKECMNKTSFKVSKEDFEK 751
Query: 767 ALRKIGPSVSKETMEYYRKIQEQFKQA 793
AL + S+++ ++ Y + ++ K+A
Sbjct: 752 ALNVVKASLTQADIQRYERFSKELKRA 778
>pir||D72613 probable transitional endoplasmic reticulum ATPase APE1367 -
Aeropyrum pernix (strain K1) >gi|5105048|dbj|BAA80362.1|
(AP000061) 726aa long hypothetical transitional
endoplasmic reticulum ATPase [Aeropyrum pernix]
Length = 726
Score = 826 bits (2111), Expect = 0.0
Identities = 450/793 (56%), Positives = 552/793 (68%), Gaps = 83/793 (10%)
Query: 7 VKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEII-GTKNTAAIAWPAYPEDEGLG 65
V+L+V+ AY RDVGR IVR+DR+T LG+ GD V++ G ++ A+ WP P+DEG G
Sbjct: 6 VELRVSEAYPRDVGRKIVRIDRQTAARLGVEVGDFVKVSKGDRSVVAVVWPLRPDDEGRG 65
Query: 66 IIRMDGTIRKNAGVGLGDEVTVRKAE-VREAKKVTLAPTEPIRFGRDFVEWLHERLVGRP 124
IIRMDG +R GV +GD VTV KAE V A KV LAPTEPIRFGRDFVE++ E L+ +P
Sbjct: 66 IIRMDGYLRAALGVTVGDTVTVEKAEKVEPASKVVLAPTEPIRFGRDFVEYVKEFLLRKP 125
Query: 125 VVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRM--TTGVTYE 182
+ RG+ I V VL + L VV +TQP+ V +TE T+ I EKPV+E +R+ VT+E
Sbjct: 126 ISRGETIIVPVL-EGLPLVVVSTQPAHFVYVTEATEVEIREKPVREEIERLRGVPKVTWE 184
Query: 183 DIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANA 242
DIG L++ E+IRE++ELP+KHPE+F+ LGIEPPKG+LLYGPPGTGKTLLAKA+ANE A
Sbjct: 185 DIGDLEEAKERIREIVELPMKHPEIFKHLGIEPPKGILLYGPPGTGKTLLAKALANEIGA 244
Query: 243 YFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRV 302
YFI+INGPEIMSKYYGESE+RLRE+FKEAEENAP+IIFIDEIDAIAPKR EVTGEVEKRV
Sbjct: 245 YFISINGPEIMSKYYGESEQRLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRV 304
Query: 303 VAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIH 362
VAQLL LMDGLK RG+VIVIGATNRPDAIDPALRRPGRFDREIE+ PD++ R EIL++H
Sbjct: 305 VAQLLTLMDGLKERGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDKRARAEILKVH 364
Query: 363 TRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNK-SKEEEIPQVLKKIDAELY 421
TR MP+ D D + ++ + + A+ + + +E +I K+I A +
Sbjct: 365 TRNMPLAEDVDLDKLAEMTHGYTGADLAALAKEAAMAALRRFIREGKINFEAKEIPATVL 424
Query: 422 DEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVL 481
E+K + D + AM +R T+ RE+
Sbjct: 425 KELKVTMKDFM----------------------EAMKMIR------------PTLIREIY 450
Query: 482 DELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEA 541
E VP V W DIGGLE+ KQ LREAVEWPLK+PE
Sbjct: 451 VE--------------------------VPEVRWSDIGGLEEAKQALREAVEWPLKHPEI 484
Query: 542 FKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREI 601
F+ GI PP+G+LL+GPPGTGKTLLAKAVATES ANFIAVRGPEILSKWVGESE+ IR+I
Sbjct: 485 FEKMGIRPPRGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESERAIRKI 544
Query: 602 FRKARQAAPTVIFIDEIDAIAPRRGT--DVNRVTDRIINQLLTEMDGIQENAGVVVIAAT 659
F +ARQAAP V+F DEIDAIAP RG D + VTDRI+NQ+L EMDGIQ + VVVI AT
Sbjct: 545 FERARQAAPAVVFFDEIDAIAPARGARFDTSGVTDRIVNQMLAEMDGIQPLSNVVVIGAT 604
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
NRPDILDPALLRPGRFDRLI VP PD++AR EIFK+HT+ +PL +DVDL++LA TEGYT
Sbjct: 605 NRPDILDPALLRPGRFDRLIYVPPPDKEARKEIFKIHTKKVPLGEDVDLEKLAEMTEGYT 664
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
GADI AV REA M +R LE G KV M+ F EAL+K+ PS++KE
Sbjct: 665 GADIEAVVREAVMAKLREKLEVG---------------KVEMRHFLEALKKVPPSLTKED 709
Query: 780 MEYYRKIQEQFKQ 792
+ Y ++ ++ K+
Sbjct: 710 ILRYERLAKELKK 722
Score = 250 bits (633), Expect = 3e-65
Identities = 135/274 (49%), Positives = 181/274 (65%), Gaps = 13/274 (4%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V + DIGGL++ + +RE +E PLKHPE+FEK+GI PP+GVLL+GPPGTGKTLLAKAVA
Sbjct: 456 VRWSDIGGLEEAKQALREAVEWPLKHPEIFEKMGIRPPRGVLLFGPPGTGKTLLAKAVAT 515
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
E+ A FIA+ GPEI+SK+ GESE +R++F+ A + APA++F DEIDAIAP R T
Sbjct: 516 ESGANFIAVRGPEILSKWVGESERAIRKIFERARQAAPAVVFFDEIDAIAPARGARFDTS 575
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
V R+V Q+LA MDG++ V+VIGATNRPD +DPAL RPGRFDR I V PD++ RK
Sbjct: 576 GVTDRIVNQMLAEMDGIQPLSNVVVIGATNRPDILDPALLRPGRFDRLIYVPPPDKEARK 635
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFK--------REGKFTKIIDKAIEEVNKSKEEE 408
EI +IHT+ +P+ D + + ++ E + RE K+ +K EV K +
Sbjct: 636 EIFKIHTKKVPLGEDVDLEKLAEMTEGYTGADIEAVVREAVMAKLREKL--EVGKVEMRH 693
Query: 409 IPQVLKKIDAELYDEVKTRLIDKLLDELADVTHG 442
+ LKK+ L E R ++L EL +T G
Sbjct: 694 FLEALKKVPPSLTKEDILR-YERLAKELKKLTLG 726
>gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 769
Score = 799 bits (2041), Expect = 0.0
Identities = 427/809 (52%), Positives = 555/809 (67%), Gaps = 83/809 (10%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
++KE+ L+V A Q+DVGRG VR+D + ++ +SPGDVVEI GT+ TAA+AWP PED
Sbjct: 12 QRKELILRVMEARQKDVGRGKVRIDIDLLSQIDVSPGDVVEIEGTRKTAALAWPLSPEDT 71
Query: 63 GLG---IIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTE-PIRFGRDFVEWLHE 118
G IIRMDG RKNAGV +GD+V VRKA V+ A V LAP+ I F+ ++ +
Sbjct: 72 TTGEKDIIRMDGITRKNAGVSIGDKVIVRKAIVKPASTVKLAPSNFSITVDPGFISYVKK 131
Query: 119 RLVGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTG 178
RL P+V GD + + VLGQ + F V +P+G+V + + T +IS+KPV E
Sbjct: 132 RLKEFPLVEGDTVLIPVLGQAIPFTVVQVKPAGIVLVNDDTIISISDKPV---EPSRYPR 188
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTYEDIGG+K++IEK+RE++ELPL+HPELF++LGIEPPKG+LLYGPPG GKTLLAKA+AN
Sbjct: 189 VTYEDIGGMKNIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLAKAIAN 248
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
E +AYF +INGPEIMSK+YGESE+RLRE+F++A+++APAIIF+DEIDAIAPKR EV GEV
Sbjct: 249 ETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDEVIGEV 308
Query: 299 EKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEI 358
E+RVVAQLL LMDGL++RG VIVI ATNRP A+DPALRRPGRFDREIE+ +PD+QGR EI
Sbjct: 309 ERRVVAQLLTLMDGLENRGNVIVIAATNRPSAVDPALRRPGRFDREIEIPLPDKQGRLEI 368
Query: 359 LQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDA 418
LQIHTR MP+ D + + + + + + A+ + + L KID
Sbjct: 369 LQIHTRNMPLSKDVDLEKLADMTHGYTGADLSALVREAAMNSLRR--------YLPKIDL 420
Query: 419 ELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPR 478
D++ +++ + ++ D + F E +P
Sbjct: 421 N-QDKIPPEILESMEVKMEDFINAF-----------------------------KEIVP- 449
Query: 479 EVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKY 538
S LRE+ IEVP V W DIGGLE++K+EL+E VE+PLKY
Sbjct: 450 ----------------------SGLREIYIEVPEVKWTDIGGLEEIKEELKEVVEYPLKY 487
Query: 539 PEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNI 598
E ++ GI PPKGILL+GPPGTGKT+LAKAVATES ANFIAVRGPEILSKWVGESEK +
Sbjct: 488 SELYQNSGIEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAV 547
Query: 599 REIFRKARQAAPTVIFIDEIDAIAPRRGTDVNR-VTDRIINQLLTEMDGIQENAGVVVIA 657
REIFRKAR AP VIF DEID+IAP RG + VT+RI+NQLL EMDGI++ VVVIA
Sbjct: 548 REIFRKARMYAPAVIFFDEIDSIAPIRGISYDSGVTERIVNQLLAEMDGIEKLENVVVIA 607
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRPDILDPALLRPGRF++LI VP PD++AR EI KVHTR + L +D+ L+++A +TEG
Sbjct: 608 ATNRPDILDPALLRPGRFEKLIYVPPPDKRARTEILKVHTRNIALGEDISLEDVAEKTEG 667
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIKPG--------------MKASEIRRLAKVTMKD 763
YTGAD+AA+ REA M A+R +++ I K MK KV+++
Sbjct: 668 YTGADLAALVREATMRAIRESMKICIDKTNENCKPTDAECRDKTMKECMKVNGVKVSLRH 727
Query: 764 FEEALRKIGPSVSKETMEYYRKIQEQFKQ 792
FEEA+RK+ PSV+++ +++Y+ E+ +Q
Sbjct: 728 FEEAMRKVKPSVTQDMLQFYQNWVEKARQ 756
>pir||B72479 probable transitional endoplasmic reticulum ATPase APE2474 -
Aeropyrum pernix (strain K1) >gi|5106179|dbj|BAA81490.1|
(AP000064) 699aa long hypothetical transitional
endoplasmic reticulum ATPase [Aeropyrum pernix]
Length = 699
Score = 794 bits (2029), Expect = 0.0
Identities = 425/764 (55%), Positives = 533/764 (69%), Gaps = 81/764 (10%)
Query: 31 MRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLGDEVTVRKA 90
M+ELG+ PGDVVEI G K T AI PAYPED GL IIRMDG +R+NA V +G++V VRK
Sbjct: 1 MKELGVEPGDVVEIEGKKKTVAIVMPAYPEDMGLDIIRMDGILRRNADVNIGEKVIVRKT 60
Query: 91 EVREAKKVTLAPTE-PIRFGRDFVEWLHERLVGRPVVRGDYIKVGVLGQELTFVVTATQP 149
VR A KV LAP + F ++ ++L G P+ GD + V V+GQ + V +P
Sbjct: 61 SVRTATKVKLAPVSYTMTVDEGFKRYVKKKLQGVPITEGDVVVVPVIGQAVQLQVVDARP 120
Query: 150 SGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFE 209
G V ++E T ++ EKPV + VTYEDIGGLK+VIEK+REM+ELPL+HPE+F+
Sbjct: 121 KGAVIVSEETIVDVLEKPVAQSR---VPKVTYEDIGGLKEVIEKVREMVELPLRHPEIFK 177
Query: 210 KLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFK 269
+LGIEPPKG+LLYGPPGTGKTLLAKAVANEA+AYFI+INGPEIMSKYYGESE+RLRE+F+
Sbjct: 178 RLGIEPPKGILLYGPPGTGKTLLAKAVANEADAYFISINGPEIMSKYYGESEQRLREIFE 237
Query: 270 EAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPD 329
EA++NAP+IIFIDEIDAIAPKR EV GEVE+RVVAQLLALMDGL++RG VIVI ATNRP+
Sbjct: 238 EAKKNAPSIIFIDEIDAIAPKRDEVVGEVERRVVAQLLALMDGLEARGNVIVIAATNRPN 297
Query: 330 AIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGK 389
AIDPALRRPGRFDREIEV +PD+ GR EILQIHTR MP+ D + + ++ + F
Sbjct: 298 AIDPALRRPGRFDREIEVPLPDKHGRLEILQIHTRHMPLAEDMDLEKLAEMTKGFTGADL 357
Query: 390 FTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLA 449
+ A+ + + L +ID + + + +++K++ + D
Sbjct: 358 AALAREAAMYALRR--------YLPEIDLD-QESIPVEVLEKMVVTMEDF---------- 398
Query: 450 ALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIE 509
+ ALR + G L E+++ E
Sbjct: 399 -------LKALREITPSG-------------LREIQI----------------------E 416
Query: 510 VPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKA 569
VP V W DIGGLEDVKQELRE VEWPLK+PEAF GI PP+G+LL+GPPGTGKTLLAKA
Sbjct: 417 VPEVRWSDIGGLEDVKQELREVVEWPLKHPEAFTRMGIRPPRGVLLFGPPGTGKTLLAKA 476
Query: 570 VATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV 629
VATES ANFIAVRGPEILSKWVGESE+ IREIF KARQ AP V+F DEIDAIAP RGTDV
Sbjct: 477 VATESGANFIAVRGPEILSKWVGESERAIREIFAKARQHAPAVVFFDEIDAIAPVRGTDV 536
Query: 630 -NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 688
RVT+RI++QLLTE+DG+ + VVVIAATNRPD++DPAL+RPGR +++I VP PD +
Sbjct: 537 GTRVTERIVSQLLTEIDGVSDLHDVVVIAATNRPDMVDPALMRPGRLEKMIYVPPPDFSS 596
Query: 689 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGM 748
R EI ++HTR +PLA+DVDL E+ARRTEGYTGADI A+ REA++ A+R +
Sbjct: 597 RLEILRIHTRKVPLAEDVDLAEIARRTEGYTGADIEALVREASLAALREDI--------- 647
Query: 749 KASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQ 792
A+V+M+ FE AL+K+ PSV+ + +EYY++ E KQ
Sbjct: 648 ------NAAEVSMRHFEVALKKVKPSVTPQMVEYYKRWLETVKQ 685
>pir||A69086 cell division control protein Cdc48 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622767|gb|AAB86112.1| (AE000923) cell division
control protein Cdc48 [Methanobacterium
thermoautotrophicum]
Length = 732
Score = 784 bits (2002), Expect = 0.0
Identities = 444/810 (54%), Positives = 548/810 (66%), Gaps = 114/810 (14%)
Query: 4 KKEVKLKVASAY-QRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
KKE+KLKVA A Q+DVGRGI R+D M +LG+S GD++EI G K TAA + D
Sbjct: 6 KKEIKLKVAEALAQQDVGRGIARVDPACMEKLGLSDGDIIEIEGKKLTAATVVSSQ-SDI 64
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVG 122
GLGIIR+DG +RKNAG +G+EVTVR+A+V++A+KV LAP + R + +
Sbjct: 65 GLGIIRIDGYLRKNAGASIGEEVTVRRADVKDAQKVVLAPVDQEVIIRGDIR---SAFLN 121
Query: 123 RPVVRGDYIKVGV----------------------LGQELTFVVTATQPSGVVQITEFTD 160
R +V+GD I G+ LG E+ V +T P+GVV++T T
Sbjct: 122 RVLVKGDIIVSGIRQHISGGGLFDEFFRDFMDISPLG-EIKLAVVSTSPAGVVRVTPSTQ 180
Query: 161 FNISEKPVKEVEK----RMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP 216
+ +KPV +V K + VTYEDIGGLK+ ++K+REMIE+PLK PELFE+LGI PP
Sbjct: 181 VEMQQKPV-DVSKLEGVKNLVDVTYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPP 239
Query: 217 KGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAP 276
KGVL++GPPGTGKTLLAKAVANE++A+FIAINGPEIMSKY G SEERLRE F+EAEENAP
Sbjct: 240 KGVLMHGPPGTGKTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEENAP 299
Query: 277 AIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
+IIFIDEIDAIAPKR +V+GEVE+R+VAQLL LMDGLKSRG+V+VIGATNRPDA+DPALR
Sbjct: 300 SIIFIDEIDAIAPKREDVSGEVERRIVAQLLTLMDGLKSRGQVVVIGATNRPDALDPALR 359
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPGRFDREIE+GVPDR+ RKEILQIHTRGMP+ D D++ +I F +
Sbjct: 360 RPGRFDREIEIGVPDREERKEILQIHTRGMPLADDVDLDELAEITHGF---------VGA 410
Query: 397 AIEEVNK-SKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
+E + K S + +VL +I A+ +E+ ++ K++ VT AD +E
Sbjct: 411 DLESLCKESAMRVLRRVLPEIKAD--EEIPKEVLKKMV-----VTR----ADFKDALKEI 459
Query: 456 AMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHW 515
+ALR ++ ++VPNV W
Sbjct: 460 QPSALREVL-------------------------------------------VQVPNVSW 476
Query: 516 DDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQ 575
DDIGGLE KQELREAVEWPLKYP+ FK +GI PPKGILL+G PGTGKTLLAKAVA ESQ
Sbjct: 477 DDIGGLEGAKQELREAVEWPLKYPDRFKKFGIRPPKGILLHGSPGTGKTLLAKAVANESQ 536
Query: 576 ANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--GTDVNRVT 633
ANFIAV+GPE+LSKWVGESEK +RE+FRKARQ APTVIF DEID+IA R T + VT
Sbjct: 537 ANFIAVKGPELLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASVRSGSTADSGVT 596
Query: 634 DRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIF 693
R++NQLLTE+DG++E V VIAATNRPDILDPALLRPGRFDR + V PD++AR IF
Sbjct: 597 QRVVNQLLTEIDGLEELQDVAVIAATNRPDILDPALLRPGRFDRHVKVEDPDKEARLAIF 656
Query: 694 KVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEI 753
+VHT+ MPLADDVDL++LA +TEGY GADI AVCREAAM+ +R M A E
Sbjct: 657 RVHTKDMPLADDVDLEKLAEKTEGYVGADIEAVCREAAMLTLR---------DNMDAEE- 706
Query: 754 RRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
V+MK F EA+ K+ P E Y
Sbjct: 707 -----VSMKYFLEAMEKVKPKGGVEEQVQY 731
>gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 769
Score = 774 bits (1978), Expect = 0.0
Identities = 431/809 (53%), Positives = 544/809 (66%), Gaps = 89/809 (11%)
Query: 5 KEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTA---AIAWPAYPED 61
+++KL+V A QRDVGR + R+ T+ LGI GD VEIIG +A A+ ++
Sbjct: 27 QQLKLRVVEARQRDVGRKVARITDYTISRLGIENGDYVEIIGPSGSALAQALIGDGIADN 86
Query: 62 EGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLV 121
E IR+DG IR++ GVG+GDEVTV++A+V++A KV LAPT+PI F + FVE++ + L+
Sbjct: 87 E----IRVDGYIRRSIGVGIGDEVTVKRAQVQDATKVVLAPTQPISFSQSFVEYVKDWLM 142
Query: 122 GRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTY 181
+P+ RG+ I V + FVV +TQPS V+IT T I ++PVKE VT+
Sbjct: 143 DKPISRGETISVPTYVGSIDFVVVSTQPSQSVRITGRTSLEIRQEPVKE--SAAVPKVTW 200
Query: 182 EDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAN 241
EDIG L+DV EKIRE++ELP++HPE+F+ LGIEPPKGVLLYGPPG GKTLLA+A+ANE
Sbjct: 201 EDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLLYGPPGVGKTLLARALANEIG 260
Query: 242 AYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKR 301
AYF +INGPEIMSK+YGESE+RLRE+F+EAE+N+PAIIFIDEIDAIAPKR EVTGEVEKR
Sbjct: 261 AYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAIIFIDEIDAIAPKREEVTGEVEKR 320
Query: 302 VVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQI 361
VVAQLL LMDG+K RGKVIVIGATNRPDA+DPALRRPGRFDREIE+ PD + RKEILQ+
Sbjct: 321 VVAQLLTLMDGIKGRGKVIVIGATNRPDAVDPALRRPGRFDREIEIRPPDAKARKEILQV 380
Query: 362 HTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELY 421
HTR MP+ D D + + + + A+ + + E +KI+ E
Sbjct: 381 HTRNMPLAEDVDLDKISEQTHGYTGADLAALAREAAMNALRRFINE------RKINLE-- 432
Query: 422 DEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVL 481
+ ++ +L EL F+ A + F T+ REV
Sbjct: 433 ---QEQIPVDVLKELKVTMQDFIDA----------------------MKFIQPTLLREVY 467
Query: 482 DELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEA 541
E+ P V W+DIGGLE+ KQ+LREAVEWPLK+PE
Sbjct: 468 VEV--------------------------PKVKWEDIGGLEEAKQQLREAVEWPLKFPEM 501
Query: 542 FKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREI 601
F+ GI PPKGILL+GPPGTGKT+LAKAVATES ANFIAVRGPEILSKWVGESEK +REI
Sbjct: 502 FEKLGIRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREI 561
Query: 602 FRKARQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATN 660
FR+ARQ AP VIF DEID+IAP RG T + VT+RI+NQLL+EMDGIQ VVVIAATN
Sbjct: 562 FRRARQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLSEMDGIQSLNRVVVIAATN 621
Query: 661 RPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTG 720
RPDILDPALLRPGRFDRLI VP PDEKAR EI K++TR +P+ V+L+ELA++ EGYTG
Sbjct: 622 RPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLEELAKKLEGYTG 681
Query: 721 ADIAAVCREAAMIAMRR----ALEKG------------IIKPGMKASEIRRLAKVTMKDF 764
ADI A+ RE M +R+ L K IK M EI K+TM+DF
Sbjct: 682 ADIEALARETTMKVLRQKYYDCLNKAKKECKDQECTDKTIKSCMSNLEI----KITMQDF 737
Query: 765 EEALRKIGPSVSKETMEYYRKIQEQFKQA 793
+ ++ + PS++K + Y + ++ K++
Sbjct: 738 LDTMKIVTPSLTKADIMRYENMVKEIKRS 766
>sp|O05209|VAT_THEAC VCP-LIKE ATPASE >gi|7484232|pir||T37458 VCP-like ATPase -
Thermoplasma acidophilum >gi|1916752|gb|AAC45089.1|
(U78072) VCP-like ATPase [Thermoplasma acidophilum]
>gi|10640117|emb|CAC11969.1| (AL445065) VAT ATPase
(VCP-like ATPase) [Thermoplasma acidophilum]
Length = 745
Score = 767 bits (1960), Expect = 0.0
Identities = 425/803 (52%), Positives = 535/803 (65%), Gaps = 83/803 (10%)
Query: 1 MAEKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE 60
M + L+VA A D G VRLD + R L GDVVEI + T + A PE
Sbjct: 1 MESNNGIILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPE 60
Query: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPT----EPIRFGRDFVEWL 116
DE GI+R+D +R N G +GD+V VRK AKKVTLAP + ++FG E++
Sbjct: 61 DENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEIAKKVTLAPIIRKDQRLKFGEGIEEYV 120
Query: 117 HERLVGRPVVRGDYIKVGVL---GQE-LTFVVTATQPSGV-VQITEFTDFNISEKPVKEV 171
L+ RP++ D I V L GQ L F V T PS V V+I E T I E+P EV
Sbjct: 121 QRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIREEPASEV 180
Query: 172 EKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTL 231
+ ++ ++YEDIGGL + + KIREMIELPLKHPELFE+LGI PPKGV+LYGPPGTGKTL
Sbjct: 181 LEEVSR-ISYEDIGGLSEQLGKIREMIELPLKHPELFERLGITPPKGVILYGPPGTGKTL 239
Query: 232 LAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR 291
+A+AVANE+ A F++INGPEIMSKYYG+SE++LRE+F +AEE AP+IIFIDEID+IAPKR
Sbjct: 240 IARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKR 299
Query: 292 SEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD 351
EV GEVE+RVVAQLL LMDG+K RG VIVIGATNR DAIDPALR
Sbjct: 300 EEVQGEVERRVVAQLLTLMDGMKERGHVIVIGATNRIDAIDPALR--------------- 344
Query: 352 RQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQ 411
R G+F + I+ + + N KE +
Sbjct: 345 ----------------------------------RPGRFDREIEIGVPDRNGRKEILMIH 370
Query: 412 VLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDF 471
+ + + +E K +K L+E+AD T+GFVGADLAAL RE+AM ALRR + E +D
Sbjct: 371 T-RNMPLGMSEEEK----NKFLEEMADYTYGFVGADLAALVRESAMNALRRYLPEIDLD- 424
Query: 472 EAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 531
+ IP E+L+++ VT DF ALK +EPS+LREV++EVPNVHWDDIGGLEDVK+E++E
Sbjct: 425 --KPIPTEILEKMVVTEDDFKNALKSIEPSSLREVMVEVPNVHWDDIGGLEDVKREIKET 482
Query: 532 VEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWV 591
VE PL P+ FK GI P KG LLYGPPG GKTLLAKAVATES ANFI+++GPE+LSKWV
Sbjct: 483 VELPLLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWV 542
Query: 592 GESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNR-VTDRIINQLLTEMDGIQEN 650
GESEK IREIF+KA+Q AP ++F+DEID+IAPRRGT + VT+RI+NQLLT +DGI+
Sbjct: 543 GESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVM 602
Query: 651 AGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 710
GVVVI ATNRPDI+DPALLR GRFD+LI +P PD++AR I KVHT+ MPLA DVDL +
Sbjct: 603 NGVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLND 662
Query: 711 LARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRK 770
+A+RTEGY GAD+ +CREA M A R E V+ K+F +AL+
Sbjct: 663 IAQRTEGYVGADLENLCREAGMNAYR---------------ENPDATSVSQKNFLDALKT 707
Query: 771 IGPSVSKETMEYYRKIQEQFKQA 793
I PSV +E +++YR + E ++
Sbjct: 708 IRPSVDEEVIKFYRTLSETMSKS 730
>gb|AAG19919.1| (AE005075) cell division cycle protein; Cdc48c [Halobacterium sp.
NRC-1]
Length = 742
Score = 725 bits (1852), Expect = 0.0
Identities = 390/803 (48%), Positives = 528/803 (65%), Gaps = 91/803 (11%)
Query: 6 EVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLG 65
EV+L+VA AY D GRGI RLD T+ L +SPGD++EI G + TAA W A +D
Sbjct: 3 EVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWNTD 62
Query: 66 IIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEP--IRFGRDFVEWLHERLVGR 123
IR+DG R+NA VG+G+ V +RKA+ +A + LAP E ++FG D + +++ R
Sbjct: 63 TIRIDGFTRQNAEVGIGERVKIRKADAEKADTLVLAPPEEASVQFGSDAAGMVKRQILKR 122
Query: 124 PVVRGDYIKVGVL---------GQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKR 174
PVV D + V GQ + + T+P GV +TE TD + E+P+ E R
Sbjct: 123 PVVARDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLVTEDTDVELREEPISGFE-R 181
Query: 175 MTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAK 234
G+TYEDIGGL++ I+++REM+ELP+KHP++F+KLGIEPP+GVLL+GPPGTGKTLLAK
Sbjct: 182 TGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAK 241
Query: 235 AVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV 294
AVANE +A F +I GPEI+SKYYGESE++LRE+F++A++++P+IIFIDE+D+IAPKR +V
Sbjct: 242 AVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDV 301
Query: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354
TGEVE+RVVAQLL +MDGL+ RG+VIVI ATNR DA+DPALRRPGRFDREIE+GVPD G
Sbjct: 302 TGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIG 361
Query: 355 RKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNK-SKEEEIPQVL 413
R+EIL+IHTRGMP+ D + F + IE ++K + + + L
Sbjct: 362 REEILKIHTRGMPLSDDVNLSTLADDTHGF---------VGADIESLSKEAAMRALRRYL 412
Query: 414 KKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEA 473
+ID + +++ LID+++ + D F GA E +A+
Sbjct: 413 PEIDLD-EEDIPPSLIDRMIVKRED----FKGA-----LSEVEPSAM------------- 449
Query: 474 ETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 533
REVL EL P + WDD+GGL + K ++E+VE
Sbjct: 450 ----REVLVEL--------------------------PKITWDDVGGLTEAKNNVKESVE 479
Query: 534 WPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGE 593
WPL PE F G+ PP G+LLYGPPGTGKTL+AKAVA E+ ANFI+VRGP++LSKWVGE
Sbjct: 480 WPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGE 539
Query: 594 SEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRIINQLLTEMDGIQENAG 652
SEK IR+ FRKARQ APTVIF DE+D++AP RG T N V++R++NQLLTE+DG++E
Sbjct: 540 SEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEMEE 599
Query: 653 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 712
V+VIAATNRPDI+DPAL+R GRFDRL+ V P + R +I K+HT+ PLA DV L+ELA
Sbjct: 600 VMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELA 659
Query: 713 RRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIG 772
R +GY G+D+A + REAA+ A+R + V M F A+ +
Sbjct: 660 ERADGYVGSDLANIAREAAIEALR---------------DDEDADDVGMAHFRAAMENVR 704
Query: 773 PSVSKETMEYYRKIQEQFKQARG 795
P+++ + MEYY ++++QFK ++G
Sbjct: 705 PTITDDLMEYYDQVEDQFKGSQG 727
>sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH protein - Halobacterium
salinarum >gi|517390|emb|CAA56097.1| (X79560) cdcH
[Halobacterium salinarum]
Length = 742
Score = 724 bits (1849), Expect = 0.0
Identities = 389/803 (48%), Positives = 528/803 (65%), Gaps = 91/803 (11%)
Query: 6 EVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLG 65
EV+L+VA AY D GRGI RLD T+ L +SPGD+++I G + TAA W A +D
Sbjct: 3 EVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIDIEGAETTAAKVWRADRQDWNTD 62
Query: 66 IIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEP--IRFGRDFVEWLHERLVGR 123
IR+DG R+NA VG+G+ V +RKA+ +A + LAP E ++FG D + +++ R
Sbjct: 63 TIRIDGFTRQNAEVGIGERVKIRKADAEKADTLVLAPPEEASVQFGSDAAGMVKRQILKR 122
Query: 124 PVVRGDYIKVGVL---------GQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKR 174
PVV D + V GQ + + T+P GV +TE TD + E+P+ E R
Sbjct: 123 PVVARDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLVTEDTDVELREEPISGFE-R 181
Query: 175 MTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAK 234
G+TYEDIGGL++ I+++REM+ELP+KHP++F+KLGIEPP+GVLL+GPPGTGKTLLAK
Sbjct: 182 TGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAK 241
Query: 235 AVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV 294
AVANE +A F +I GPEI+SKYYGESE++LRE+F++A++++P+IIFIDE+D+IAPKR +V
Sbjct: 242 AVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDV 301
Query: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354
TGEVE+RVVAQLL +MDGL+ RG+VIVI ATNR DA+DPALRRPGRFDREIE+GVPD G
Sbjct: 302 TGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIG 361
Query: 355 RKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNK-SKEEEIPQVL 413
R+EIL+IHTRGMP+ D + F + IE ++K + + + L
Sbjct: 362 REEILKIHTRGMPLSDDVNLSTLADDTHGF---------VGADIESLSKEAAMRALRRYL 412
Query: 414 KKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEA 473
+ID + +++ LID+++ + D F GA E +A+
Sbjct: 413 PEIDLD-EEDIPPSLIDRMIVKRED----FKGA-----LSEVEPSAM------------- 449
Query: 474 ETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVE 533
REVL EL P + WDD+GGL + K ++E+VE
Sbjct: 450 ----REVLVEL--------------------------PKITWDDVGGLTEAKNNVKESVE 479
Query: 534 WPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGE 593
WPL PE F G+ PP G+LLYGPPGTGKTL+AKAVA E+ ANFI+VRGP++LSKWVGE
Sbjct: 480 WPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGE 539
Query: 594 SEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRIINQLLTEMDGIQENAG 652
SEK IR+ FRKARQ APTVIF DE+D++AP RG T N V++R++NQLLTE+DG++E
Sbjct: 540 SEKAIRQTFRKARQVAPTVIFFDELDSLAPGRGQTGGNNVSERVVNQLLTELDGLEEMEE 599
Query: 653 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 712
V+VIAATNRPDI+DPAL+R GRFDRL+ V P + R +I K+HT+ PLA DV L+ELA
Sbjct: 600 VMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELA 659
Query: 713 RRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIG 772
R +GY G+D+A + REAA+ A+R + V M F A+ +
Sbjct: 660 ERADGYVGSDLANIAREAAIEALR---------------DDEDADDVGMAHFRAAMENVR 704
Query: 773 PSVSKETMEYYRKIQEQFKQARG 795
P+++ + MEYY ++++QFK ++G
Sbjct: 705 PTITDDLMEYYDQVEDQFKGSQG 727
>gb|AAG19776.1| (AE005063) cell division cycle protein; Cdc48b [Halobacterium sp.
NRC-1]
Length = 759
Score = 711 bits (1816), Expect = 0.0
Identities = 389/810 (48%), Positives = 511/810 (63%), Gaps = 88/810 (10%)
Query: 7 VKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKN---TAAIAWPAYPEDEG 63
+KL V Q+D GRG+ +DR +M EL + GD V I G + A WP YPED+G
Sbjct: 1 MKLTVKPLKQKDAGRGLAAVDRDSMDELALENGDYVVIDGQGDHGRAVARVWPGYPEDDG 60
Query: 64 LGIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGR 123
G++R+DG +RK A VG+ D+VTV A+++ A VT+A + +R + + +RL GR
Sbjct: 61 DGVVRIDGRLRKEADVGIDDQVTVEPADIKPAGGVTVALPQNLRVRGNIAPMVRDRLNGR 120
Query: 124 PVVRGDYIKVG--------VLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRM 175
PV G I + + GQ++ + T+PSG V ++ T+ +SE+P +E+
Sbjct: 121 PVTAGQTIPISFGFGGMSTISGQQIPVKIAETEPSGTVVVSNDTEIQLSERPAEEIAPGA 180
Query: 176 ---------TTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPG 226
T VTYEDIGGL +E++REMIELP++HPELF++LGI+PPKGVLL+GPPG
Sbjct: 181 GEAAETGDPTPNVTYEDIGGLDGELEQVREMIELPMRHPELFQQLGIDPPKGVLLHGPPG 240
Query: 227 TGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDA 286
TGKTL+AKAVANE +A+F I+GPEIMSKYYGESEE+LREVF EAEENAPAI+F+DE+D+
Sbjct: 241 TGKTLIAKAVANEIDAHFETISGPEIMSKYYGESEEKLREVFDEAEENAPAIVFVDELDS 300
Query: 287 IAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
IAPKR E G+VE+RVVAQLL+LMDGL+ RG V VI ATNR DAIDPALRR GRFDREIE
Sbjct: 301 IAPKRGETQGDVERRVVAQLLSLMDGLEDRGDVTVIAATNRVDAIDPALRRGGRFDREIE 360
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNK-SK 405
+GVPD+ GRKEILQ+HTRGMP+ D DD + F + IE + K +
Sbjct: 361 IGVPDQDGRKEILQVHTRGMPLVEDIDLDDYAESTHGF---------VGADIESLAKEAA 411
Query: 406 EEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIR 465
+ +V ID E DE+ L++ + AD G + +AL
Sbjct: 412 MNALRRVRPDIDLE-SDEIDAELLESISITEADFKRALNGIEPSAL-------------- 456
Query: 466 EGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVK 525
REV +EVP+ W D+GGL D K
Sbjct: 457 --------------------------------------REVFVEVPDTTWADVGGLTDTK 478
Query: 526 QELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPE 585
+ LRE ++WPL YP+ F + KG+LLYGPPGTGKTLLAKAVA E+ +NFI+V+GPE
Sbjct: 479 ERLRETIQWPLDYPDVFSEMDLQSAKGVLLYGPPGTGKTLLAKAVANEANSNFISVKGPE 538
Query: 586 ILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG--TDVNRVTDRIINQLLTE 643
+L+K+VGESEK +RE+F KAR APTV+F DEIDAIA +RG T + V +R+++QLLTE
Sbjct: 539 LLNKYVGESEKGVREVFEKARSNAPTVVFFDEIDAIAGQRGRATSDSGVGERVVSQLLTE 598
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
+DGI+ VVV+A +NRPD++D ALLRPGR DR I VP PD AR I VHTR PLA
Sbjct: 599 LDGIEALEDVVVVATSNRPDLIDDALLRPGRLDRHIHVPVPDADARRAILDVHTRDKPLA 658
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKD 763
DDVDL +A+R +G+ GAD+ A+ REA M A R + + P AS+ +VTM
Sbjct: 659 DDVDLDVVAQRMDGFVGADVEALVREATMNATREFINS--VDPA-DASDSVGNVRVTMAH 715
Query: 764 FEEALRKIGPSVSKETMEYYRKIQEQFKQA 793
FE AL ++ SV + E Y +I+++F A
Sbjct: 716 FEAALGEVTASVDADVKENYEEIEQRFNTA 745
>gb|AAG20864.1| (AE005154) cell division cycle protein; Cdc48d [Halobacterium sp.
NRC-1]
Length = 737
Score = 694 bits (1771), Expect = 0.0
Identities = 376/795 (47%), Positives = 510/795 (63%), Gaps = 84/795 (10%)
Query: 7 VKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKN--TAAIAWPAYPEDEGL 64
++L V RD G G+ +DR ++E+G+S GD V I G T A WP+ D G
Sbjct: 1 MRLTVKQLKNRDPGSGMAVIDRDALQEIGVSSGDFVAIEGRNGGRTVARVWPSNTSDAGR 60
Query: 65 GIIRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRP 124
GIIR+DG +R+ A V + D V V K EV A +VT++ + ++ D L E LV +
Sbjct: 61 GIIRIDGQLRQAANVSIDDRVEVEKTEVEPADRVTVSLPQNLQIRGDLGSHLREHLVDQA 120
Query: 125 VVRGDYIKV--------GVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEV----- 171
V G + G G+ + V TQPSG V + T+ I+++ +EV
Sbjct: 121 VRAGQTVAFPIGFGMFSGRSGRRIPLRVVDTQPSGTVVVQNTTEIEIADQSAQEVSVESG 180
Query: 172 --EKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
E +TYEDIGGL D +E++REMIELP++HPELF LGIEPPKGVLL+GPPGTGK
Sbjct: 181 EPENTTAPALTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGK 240
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+AKAVANE +A+F I+GPEIMSKYYGESEE+LR+VF+EAEENAPAI+FIDE+D+IAP
Sbjct: 241 TLIAKAVANEIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAP 300
Query: 290 KRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
KR +V+G+VE+RVVAQLL+LMDGL+ RG++ VIG TNR DA+DPAL
Sbjct: 301 KREDVSGDVERRVVAQLLSLMDGLEERGQLTVIGTTNRVDAVDPAL-------------- 346
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
+R G+F + I+ + + E+I
Sbjct: 347 -----------------------------------RRPGRFDREIEIGVPD--HDGREKI 369
Query: 410 PQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKI 469
Q+ + L D V LD A+ T GFVGADL L +E+AM ALRR+ + +
Sbjct: 370 LQIHTR-GMPLGDGVD-------LDRYAENTQGFVGADLENLVKESAMHALRRIRPD--L 419
Query: 470 DFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELR 529
D + E IP ++LD ++VT DF EAL+ +EPSALREV +EVP+V WD +GGL+D K+ L+
Sbjct: 420 DLDEEEIPADILDSIEVTENDFKEALRGIEPSALREVFVEVPDVTWDHVGGLDDAKERLQ 479
Query: 530 EAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSK 589
E V+WPL++ +A++ + P KG+LLYGPPGTGKTLLAKAVA E+ +NFI+++GPE+ +K
Sbjct: 480 ETVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVANEANSNFISIKGPELFNK 539
Query: 590 WVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV--NRVTDRIINQLLTEMDGI 647
+VGESE+ +RE+F KAR+ APTV+F DEIDAIA RG V + V +R+++QLLTE+DG+
Sbjct: 540 YVGESERGVREVFSKARENAPTVVFFDEIDAIASERGQGVGDSNVGERVVSQLLTELDGL 599
Query: 648 QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVD 707
+E +VVIA TNRPD++D ALLRPGR DR + V PDE AR EIF++HT PLA+DVD
Sbjct: 600 EELEDIVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAARREIFEIHTEDKPLAEDVD 659
Query: 708 LKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEA 767
+ EL RT+GY GADI AVCREAA +A+R + EI +++++ FE+A
Sbjct: 660 VDELVERTDGYVGADIEAVCREAATVAVREYVRATASAESANVDEI----ELSIEHFEQA 715
Query: 768 LRKIGPSVSKETMEY 782
L ++ + ET +
Sbjct: 716 LEEVDSNAGSETQAF 730
>sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|1669660|emb|CAA70565.1|
(Y09396) protein of AAA family [Capsicum annuum]
Length = 805
Score = 652 bits (1665), Expect = 0.0
Identities = 362/815 (44%), Positives = 497/815 (60%), Gaps = 91/815 (11%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K +L V A D +V L TM +L + GD + I G K + E
Sbjct: 25 KKAANRLVVDEAVNDD--NSVVALHPATMEKLQLFRGDTILIKGKKRKDTVVIALADETC 82
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIRFGRDFVEWLHERLV 121
IRM+ +R N V LGD V+V + +V+ K+V + P + D +E L L
Sbjct: 83 DEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPID------DTIEGLTGDLF 136
Query: 122 G-----------RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKE 170
RP+ +GD V + + F V T P + T+ +PVK
Sbjct: 137 DAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKR 196
Query: 171 VEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKT 230
++ V Y+D+GG++ + +IRE++ELPL+HP+LF+ +G++PPKG+LLYGPPG+GKT
Sbjct: 197 EDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 256
Query: 231 LLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK 290
L+A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+NAP+IIFIDEID+IAPK
Sbjct: 257 LIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316
Query: 291 RSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVP 350
R + GEVE+R+V+QLL LMDGLKSR VIV+GATNRP++IDPALRR GRFDREI++GVP
Sbjct: 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 376
Query: 351 DRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIP 410
D GR E+L IHT+ M K EEV+
Sbjct: 377 DEVGRLEVLGIHTKNM-----------------------------KLAEEVD-------- 399
Query: 411 QVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKID 470
L+ ++ THG+VGADLAAL EAA+ +R + +D
Sbjct: 400 ----------------------LERISKDTHGYVGADLAALCTEAALQCIRE--KMDVLD 435
Query: 471 FEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELRE 530
E +TI EVL+ + VT F AL PSALRE ++EVPNV W+DIGGLE+VK+EL+E
Sbjct: 436 LEDDTIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQE 495
Query: 531 AVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKW 590
V++P++ PE F+ +G++P KG+L YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W
Sbjct: 496 TVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555
Query: 591 VGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT---DVNRVTDRIINQLLTEMDGI 647
GESE N+REIF KARQ+AP V+F DE+D+IA +RG+ D DR++NQLLTEMDG+
Sbjct: 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGM 615
Query: 648 QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVD 707
V +I ATNRPDI+DPALLRPGR D+LI +P PDE +R +IFK R PL+ D+D
Sbjct: 616 NAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDID 675
Query: 708 LKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK-------PGMKASEIRRLAKVT 760
L+ LA+ T+G++GAD+ +C+ A A+R +EK I + P ++ + ++
Sbjct: 676 LRALAKHTQGFSGADVTEICQRACKYAIRENIEKDIEREKRRQENPDSMDEDVDEVPEIK 735
Query: 761 MKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
FEE+++ SVS + Y+ + +Q+RG
Sbjct: 736 PAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 770
>pir||T46169 CDC48-like protein - Arabidopsis thaliana
>gi|6630743|emb|CAB64226.1| (AL132958) CDC48-like
protein [Arabidopsis thaliana]
Length = 815
Score = 652 bits (1664), Expect = 0.0
Identities = 362/811 (44%), Positives = 501/811 (61%), Gaps = 81/811 (9%)
Query: 3 EKKEV--KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPE 60
EKK+ +L V A D +V L TM +L + GD + I G K + E
Sbjct: 23 EKKKAANRLVVDEAINDD--NSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADE 80
Query: 61 DEGLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWL 116
IRM+ +R N V LGD ++V + +V+ +V + P + G F +L
Sbjct: 81 TCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYL 140
Query: 117 HERLVG--RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKR 174
+ RPV +GD V + + F V T P+ + T+ +P+K ++
Sbjct: 141 KPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEE 200
Query: 175 MTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAK 234
V Y+D+GG++ + +IRE++ELPL+HP+LF+ +G++PPKG+LLYGPPG+GKTL+A+
Sbjct: 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAR 260
Query: 235 AVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV 294
AVANE A+F INGPEIMSK GESE LR+ F+EAE+NAP+IIFIDEID+IAPKR +
Sbjct: 261 AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT 320
Query: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354
GEVE+R+V+QLL LMDGLKSR VIV+GATNRP++IDPALRR GRFDREI++GVPD G
Sbjct: 321 HGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIG 380
Query: 355 RKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLK 414
R E+L+IHT+ M K+ ED +E V+K
Sbjct: 381 RLEVLRIHTKNM------------KLAEDVD------------LERVSKD---------- 406
Query: 415 KIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAE 474
THG+VGADLAAL EAA+ +R + ID + E
Sbjct: 407 -------------------------THGYVGADLAALCTEAALQCIRE--KMDVIDLDDE 439
Query: 475 TIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEW 534
I E+L+ + V+ F AL PSALRE ++EVPNV W+DIGGLE+VK+EL+E V++
Sbjct: 440 EIDAEILNSMAVSNDHFQTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQY 499
Query: 535 PLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGES 594
P+++PE F+ +G++P KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GES
Sbjct: 500 PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 559
Query: 595 EKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT---DVNRVTDRIINQLLTEMDGIQENA 651
E N+REIF KARQ+AP V+F DE+D+IA +RG D DR++NQLLTEMDG+
Sbjct: 560 EANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKK 619
Query: 652 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKEL 711
V +I ATNRPDI+DPALLRPGR D+LI +P PDE++R++IFK R P+A DVDL+ L
Sbjct: 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRAL 679
Query: 712 ARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK-------PGMKASEIRRLAKVTMKDF 764
A+ T+G++GADI +C+ + A+R +EK I K P + +A++ F
Sbjct: 680 AKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAEIKAGHF 739
Query: 765 EEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
EE+++ SVS + Y+ + +Q+RG
Sbjct: 740 EESMKYARRSVSDADIRKYQAFAQTLQQSRG 770
>sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|2118115|pir||S60112
transitional endoplasmic reticulum ATPase - Arabidopsis
thaliana >gi|1019904|gb|AAC49120.1| (U37587) cell
division cycle protein [Arabidopsis thaliana]
>gi|6681343|gb|AAF23260.1|AC015985_18 (AC015985)
putative transitional endoplasmic reticulum ATPase
[Arabidopsis thaliana]
Length = 809
Score = 649 bits (1655), Expect = 0.0
Identities = 359/811 (44%), Positives = 497/811 (61%), Gaps = 81/811 (9%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K +L V A D +V L TM +L + GD + I G K + E
Sbjct: 24 KKSPNRLVVDEAINDD--NSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETC 81
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHE 118
IRM+ +R N V LGD ++V + +V+ K+V + P + G F +L
Sbjct: 82 EEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKP 141
Query: 119 RLVG--RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMT 176
+ RPV +GD V + + F V T P+ + T+ +PVK ++
Sbjct: 142 YFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERL 201
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
V Y+D+GG++ + +IRE++ELPL+HP+LF+ +G++PPKG+LLYGPPG+GKTL+A+AV
Sbjct: 202 DDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 261
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
ANE A+F INGPEIMSK GESE LR+ F+EAE+NAP+IIFIDEID+IAPKR + G
Sbjct: 262 ANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 321
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
EVE+R+V+QLL LMDGLKSR VIV+GATNRP++IDPALRR GRFDREI++GVPD GR
Sbjct: 322 EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRL 381
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
E+L+IHT+ +K+ ED
Sbjct: 382 EVLRIHTKN------------MKLAEDVD------------------------------- 398
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETI 476
L+ ++ THG+VGADLAAL EAA+ +R + ID E ++I
Sbjct: 399 ----------------LERISKDTHGYVGADLAALCTEAALQCIRE--KMDVIDLEDDSI 440
Query: 477 PREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPL 536
E+L+ + VT F+ AL PSALRE ++EVPNV W+DIGGLE+VK+EL+E V++P+
Sbjct: 441 DAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPV 500
Query: 537 KYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEK 596
++PE F+ +G++P KG+L YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W GESE
Sbjct: 501 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA 560
Query: 597 NIREIFRKARQAAPTVIFIDEIDAIAPRR----GTDVNRVTDRIINQLLTEMDGIQENAG 652
N+REIF KARQ+AP V+F DE+D+IA +R G D DR++NQLLTEMDG+
Sbjct: 561 NVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKT 620
Query: 653 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 712
V +I ATNRPDI+D ALLRPGR D+LI +P PDE +R IFK R P+A DVD+ LA
Sbjct: 621 VFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALA 680
Query: 713 RRTEGYTGADIAAVCREAAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDF 764
+ T+G++GADI +C+ A A+R +EK I K M+ + ++++ F
Sbjct: 681 KYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHF 740
Query: 765 EEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
EE+++ SVS + Y+ + +Q+RG
Sbjct: 741 EESMKYARRSVSDADIRKYQAFAQTLQQSRG 771
>pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
>gi|7378614|emb|CAB83290.1| (AL162751) transitional
endoplasmic reticulum ATPase [Arabidopsis thaliana]
Length = 843
Score = 644 bits (1643), Expect = 0.0
Identities = 357/811 (44%), Positives = 495/811 (61%), Gaps = 81/811 (9%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K +L V A D +V L TM +L + GD + I G K + E
Sbjct: 57 KKSPNRLVVDEAINDD--NSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETC 114
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHE 118
IRM+ +R N V LGD ++V + +V+ K+V + P + G F +L
Sbjct: 115 EEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKP 174
Query: 119 RLVG--RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMT 176
+ RPV +GD V + + F V T P+ + T+ +PVK ++
Sbjct: 175 YFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERL 234
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
V Y+D+GG++ + +IRE++ELPL+HP+LF+ +G++PPKG+LLYGPPG+GKTL+A+AV
Sbjct: 235 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 294
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
ANE A+F INGPEIMSK GESE LR+ F+EAE+NAP+IIFIDEID+IAPKR + G
Sbjct: 295 ANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNG 354
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
EVE+R+V+QLL LMDGLKSR VIV+GATNRP++IDPALRR GRFDREI++GVPD GR
Sbjct: 355 EVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRL 414
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
E+L+IHT+ +K+ ED
Sbjct: 415 EVLRIHTKN------------MKLAEDVD------------------------------- 431
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETI 476
L+ ++ THG+VGADLAAL EAA+ +R + ID E ++I
Sbjct: 432 ----------------LERISKDTHGYVGADLAALCTEAALQCIRE--KMDVIDLEDDSI 473
Query: 477 PREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPL 536
E+L+ + V+ F+ AL PSALRE ++EVPNV W+DIGGLE+VK+EL+E V++P+
Sbjct: 474 DAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPV 533
Query: 537 KYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEK 596
++PE F+ +G++P KG+L YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W GESE
Sbjct: 534 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA 593
Query: 597 NIREIFRKARQAAPTVIFIDEIDAIAPRRGT---DVNRVTDRIINQLLTEMDGIQENAGV 653
N+REIF KARQ+AP V+F DE+D+IA +RG D DR++NQLLTEMDG+ V
Sbjct: 594 NVREIFDKARQSAPCVLFFDELDSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTV 653
Query: 654 VVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELAR 713
+I ATNRPDI+D ALLRPGR D+LI +P PDE +R IFK R P+A DVD+ LA+
Sbjct: 654 FIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAK 713
Query: 714 RTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKD---------F 764
T+G++GADI +C+ A A+R +EK I ++ + + + D F
Sbjct: 714 YTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHF 773
Query: 765 EEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
EE+++ SVS + Y+ + +Q+RG
Sbjct: 774 EESMKYARRSVSDADIRKYQAFAQTLQQSRG 804
>gb|AAB40928.2| (U83085) cell division cycle protein 48 [Dictyostelium discoideum]
Length = 793
Score = 622 bits (1587), Expect = e-177
Identities = 348/817 (42%), Positives = 486/817 (58%), Gaps = 93/817 (11%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K +L V A D +V L+ +TM +L GD + I G K +
Sbjct: 19 KKAPNRLFVEEAINDD--NSVVTLNPETMDQLQFFRGDTLLIKGKKRRDTVCIVLSDPTI 76
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRK-AEVREAKKVTLAPTEPIRFGRDFVEWLHERLV 121
IRM+ +R N V LGD ++V + ++V+ K++ + P + D +E L L
Sbjct: 77 DPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIHVLPID------DTIEGLSGNLF 130
Query: 122 G-----------RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKE 170
RPV +GD V + + F V T P + T + + VK
Sbjct: 131 DLYLKPYFLEAYRPVRKGDLFLVRGGMRAVEFKVVETDPGEYCIVAPETFIHCEGEAVKR 190
Query: 171 VEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKT 230
++ V Y+DIGG++ + +IRE++ELPL+HP+LF+ +G++PPKG+LLYGPPG GKT
Sbjct: 191 EDEDRLDEVGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKT 250
Query: 231 LLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK 290
++A+AVANE A+F INGPEIMSK GESE LR+ F+EAE+NAP+IIFIDEID+IAPK
Sbjct: 251 MIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 310
Query: 291 RSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVP 350
R + GEVE+R+V+QLL LMDGLKSR VIV+GATNRP++IDPALRR GRFDREI++ +P
Sbjct: 311 REKTQGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDITIP 370
Query: 351 DRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIP 410
D GR L+I+ + K + +D
Sbjct: 371 DATGR----------------------LEIMRIHTKNMKLDETVD--------------- 393
Query: 411 QVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKID 470
L+ +A+ THG+VGADLAAL E+A+ +R + ID
Sbjct: 394 ----------------------LEAVANETHGYVGADLAALCTESALQCIRE--KMDVID 429
Query: 471 FEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELRE 530
E ETI E+L+ + VT+ F AL + PSALRE ++EVP W+DIGGLE VK+ELRE
Sbjct: 430 LEDETISAEILESMSVTQDHFRTALTLSNPSALRETVVEVPTTTWEDIGGLEGVKRELRE 489
Query: 531 AVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKW 590
V++P+++PE F+ +G+ P KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W
Sbjct: 490 TVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 549
Query: 591 VGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT---DVNRVTDRIINQLLTEMDGI 647
GESE N+RE+F KARQAAP V+F DE+D+IA RG+ D DR+INQ+LTEMDG+
Sbjct: 550 FGESEANVRELFDKARQAAPCVLFFDELDSIARSRGSSQGDAGGAGDRVINQILTEMDGM 609
Query: 648 QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVD 707
V +I ATNRPDI+DPA+LRPGR D+LI +P PD +R I K P+A DVD
Sbjct: 610 NAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDLPSRVAILKACLNKSPVAKDVD 669
Query: 708 LKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK---------PGMKASEIRRLAK 758
L+ L ++T+G++GAD+ +C+ A +A+R ++EK I M+ + + +
Sbjct: 670 LEFLGQKTQGFSGADLTEICQRACKLAIRESIEKDIESTKARQESGDTKMEDDSVDPVPE 729
Query: 759 VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
+T F+EA+R SVS + Y + Q+RG
Sbjct: 730 ITRDHFQEAMRSARRSVSDNDIRKYESFAQTLVQSRG 766
>sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VALOSIN CONTAINING PROTEIN
HOMOLOG) (VCP) >gi|7435757|pir||T06409
valosin-containing protein - soybean
>gi|862480|gb|AAA80587.1| (U20213) valosin-containing
protein [Glycine max]
Length = 807
Score = 619 bits (1578), Expect = e-176
Identities = 356/812 (43%), Positives = 493/812 (59%), Gaps = 83/812 (10%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+K +L V A D +V + +TM +L + GD + I G K I E+
Sbjct: 25 KKSPNRLVVDEAVNDD--NSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADENC 82
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHE 118
IRM+ +R N V LGD V+V + +V+ K+V + P + G F +L
Sbjct: 83 EEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKP 142
Query: 119 RLVG--RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMT 176
+ RPV +GD V + + F V T P + T+ +P+K ++
Sbjct: 143 YFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCVVAPDTEIFCEGEPLKREDEERL 202
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
V Y+D+GG++ + +IRE++ELPL+HP+LF+ +G++PPKG+LLYGPPG+GKTL+A+AV
Sbjct: 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV 262
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
ANE A+F INGPEIMSK GESE LR+ F+EAE+NAP+IIFIDEID+IAPKR + G
Sbjct: 263 ANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 322
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
EVE+R+V+QLL LMDGLKSR VIVIGATNRP++IDPALR
Sbjct: 323 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR-------------------- 362
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAI-EEVNKSKEEEIPQVLKK 415
R G+F + ID + +EV + E+ ++ K
Sbjct: 363 -----------------------------RFGRFDREIDIGVPDEVGRL---EVLRIHTK 390
Query: 416 IDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAET 475
+ +L D+V L+ +A THG+VGADLAAL EAA+ +R + ID E ET
Sbjct: 391 -NMKLSDDVD-------LERIAKDTHGYVGADLAALCTEAALQCIRE--KMDVIDLEDET 440
Query: 476 IPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWP 535
I EVL+ + VT F AL PSALRE ++EVPNV W+DIGGLE+VK+EL+E V++P
Sbjct: 441 IDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYP 500
Query: 536 LKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESE 595
+++PE F+ +G++P KG+L YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W GESE
Sbjct: 501 VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE 560
Query: 596 KNIREIFRKARQAAPTVIFIDEIDAIAPRRGT---DVNRVTDRIINQLLTEMDGIQENAG 652
N+REIF KARQ+AP V+F DE+D+IA +RG+ D DR++NQLLTEMDG+
Sbjct: 561 ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620
Query: 653 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 712
V +I ATNRPDI+DPALLRPGR D+LI +P PDE +R +IFK R P+A +VDL+ LA
Sbjct: 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALA 680
Query: 713 RRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKD--------- 763
R T+G++GADI +C+ A A+R +EK I + + + T+ D
Sbjct: 681 RHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAH 740
Query: 764 FEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
FEE+++ SVS + Y+ + +Q+RG
Sbjct: 741 FEESMKFARRSVSDADIRKYQAFAQTLQQSRG 772
>gi|6005942 valosin-containing protein [Homo sapiens]
>gi|11429568|ref|XP_005631.1| valosin-containing protein
[Homo sapiens] >gi|6094447|sp|P55072|TERA_HUMAN
TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE)
(15S MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING
PROTEIN) (VCP) [CONTAINS: VALOSIN]
>gi|7435756|pir||T02243 probable transitional
endoplasmic reticulum ATPase - human
>gi|2984586|gb|AAC07984.1| (AC004472) TERA_HUMAN [Homo
sapiens] >gi|5410290|gb|AAD43016.1| (AF100752)
transitional endoplasmic reticulum ATPase [Homo sapiens]
Length = 806
Score = 613 bits (1564), Expect = e-174
Identities = 353/806 (43%), Positives = 487/806 (59%), Gaps = 81/806 (10%)
Query: 8 KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGII 67
+L V A D +V L + M EL + GD V + G K A+ + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 68 RMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG- 122
RM+ +R N V LGD ++++ +V+ K++ + P + G F +L +
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 142
Query: 123 -RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVT 180
RP+ +GD V + + F V T PS + T + +P+K E E+ V
Sbjct: 143 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 202
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
Y+DIGG + + +I+EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
A+F INGPEIMSK GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
R+V+QLL LMDGLK R VIV+ ATNRP++IDPALR
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR------------------------ 358
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
R G+F + +D I + + EI Q+ K + +L
Sbjct: 359 -------------------------RFGRFDREVDIGIPDA--TGRLEILQIHTK-NMKL 390
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
D+V L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV
Sbjct: 391 ADDVD-------LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEV 441
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
++ L VT DF AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+
Sbjct: 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
F +G+TP KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+RE
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIA 657
IF KARQAAP V+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRPDI+DPA+LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALR 769
++GAD+ +C+ A +A+R ++E I + M+ E + ++ FEEA+R
Sbjct: 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741
Query: 770 KIGPSVSKETMEYYRKIQEQFKQARG 795
SVS + Y + +Q+RG
Sbjct: 742 FARRSVSDNDIRKYEMFAQTLQQSRG 767
>sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN] >gi|1083817|pir||A55190
transitional endoplasmic reticulum ATPase (EC 3.6.1.-)
[validated] - rat >gi|641973|gb|AAC52154.1| (U11760)
transitional endoplasmic reticulum ATPase [Rattus
norvegicus] >gi|1093322|prf||2103265A transitional
endoplasmic reticulum ATPase [Rattus norvegicus]
Length = 806
Score = 613 bits (1564), Expect = e-174
Identities = 353/806 (43%), Positives = 487/806 (59%), Gaps = 81/806 (10%)
Query: 8 KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGII 67
+L V A D +V L + M EL + GD V + G K A+ + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 68 RMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG- 122
RM+ +R N V LGD ++++ +V+ K++ + P + G F +L +
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 142
Query: 123 -RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVT 180
RP+ +GD V + + F V T PS + T + +P+K E E+ V
Sbjct: 143 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 202
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
Y+DIGG + + +I+EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
A+F INGPEIMSK GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
R+V+QLL LMDGLK R VIV+ ATNRP++IDPALR
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR------------------------ 358
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
R G+F + +D I + + EI Q+ K + +L
Sbjct: 359 -------------------------RFGRFDREVDIGIPDA--TGRLEILQIHTK-NMKL 390
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
D+V L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV
Sbjct: 391 ADDVD-------LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEV 441
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
++ L VT DF AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+
Sbjct: 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
F +G+TP KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+RE
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIA 657
IF KARQAAP V+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRPDI+DPA+LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALR 769
++GAD+ +C+ A +A+R ++E I + M+ E + ++ FEEA+R
Sbjct: 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741
Query: 770 KIGPSVSKETMEYYRKIQEQFKQARG 795
SVS + Y + +Q+RG
Sbjct: 742 FARRSVSDNDIRKYEMFAQTLQQSRG 767
>pir||VPPG transitional endoplasmic reticulum ATPase - pig
>gi|225450|prf||1303334A valosin precursor [Sus scrofa
domestica]
Length = 806
Score = 613 bits (1564), Expect = e-174
Identities = 353/806 (43%), Positives = 487/806 (59%), Gaps = 81/806 (10%)
Query: 8 KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGII 67
+L V A D +V L + M EL + GD V + G K A+ + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 68 RMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG- 122
RM+ +R N V LGD ++++ +V+ K++ + P + G F +L +
Sbjct: 83 RMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 142
Query: 123 -RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVT 180
RP+ +GD V + + F V T PS + T + +P+K E E+ V
Sbjct: 143 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 202
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
Y+DIGG + + +I+EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
A+F INGPEIMSK GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
R+V+QLL LMDGLK R VIV+ ATNRP++IDPALR
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR------------------------ 358
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
R G+F + +D I + + EI Q+ K + +L
Sbjct: 359 -------------------------RFGRFDREVDIGIPDA--TGRLEILQIHTK-NMKL 390
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
D+V L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV
Sbjct: 391 ADDVD-------LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEV 441
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
++ L VT DF AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+
Sbjct: 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
F +G+TP KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+RE
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIA 657
IF KARQAAP V+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRPDI+DPA+LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALR 769
++GAD+ +C+ A +A+R ++E I + M+ E + ++ FEEA+R
Sbjct: 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741
Query: 770 KIGPSVSKETMEYYRKIQEQFKQARG 795
SVS + Y + +Q+RG
Sbjct: 742 FARRSVSDNDIRKYEMFAQTLQQSRG 767
>gi|6678559 valosin containing protein; homolog of yeast cdc48 (S. cerevisiae)
[Mus musculus] >gi|400712|sp|Q01853|TERA_MOUSE
TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE)
(15S MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING
PROTEIN) (VCP) [CONTAINS: VALOSIN]
>gi|284979|pir||S25197 transitional endoplasmic
reticulum ATPase - mouse >gi|55217|emb|CAA78412.1|
(Z14044) murine valosin-containing protein [Mus
musculus]
Length = 806
Score = 613 bits (1563), Expect = e-174
Identities = 352/806 (43%), Positives = 487/806 (59%), Gaps = 81/806 (10%)
Query: 8 KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGII 67
+L V A D +V L + M EL + GD V + G K A+ + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 68 RMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG- 122
RM+ +R N V LGD ++++ +V+ K++ + P + G F +L +
Sbjct: 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 142
Query: 123 -RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVT 180
RP+ +GD V + + F V T PS + T + +P+K E E+ V
Sbjct: 143 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 202
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
Y+D+GG + + +I+EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
A+F INGPEIMSK GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
R+V+QLL LMDGLK R VIV+ ATNRP++IDPALR
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR------------------------ 358
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
R G+F + +D I + + EI Q+ K + +L
Sbjct: 359 -------------------------RFGRFDREVDIGIPDA--TGRLEILQIHTK-NMKL 390
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
D+V L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV
Sbjct: 391 ADDVD-------LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEV 441
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
++ L VT DF AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+
Sbjct: 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPD 501
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
F +G+TP KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+RE
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIA 657
IF KARQAAP V+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRPDI+DPA+LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALR 769
++GAD+ +C+ A +A+R ++E I + M+ E + ++ FEEA+R
Sbjct: 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741
Query: 770 KIGPSVSKETMEYYRKIQEQFKQARG 795
SVS + Y + +Q+RG
Sbjct: 742 FARRSVSDNDIRKYEMFAQTLQQSRG 767
>sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 (P97/CDC48
HOMOLOG 2) >gi|7497271|pir||T19879 hypothetical protein
C41C4.8 - Caenorhabditis elegans
>gi|3874892|emb|CAA88105.1| (Z48045) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=656.9,
E-value=3.5e-194, N=2~cDNA EST EMBL:M89239 comes from
this gene; cDNA EST yk9e6.3 comes from this gene~cDNA
EST yk9e6.5 comes> >gi|3875715|emb|CAA88314.1| (Z48334)
contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=656.9, E-value=3.5e-194, N=2~cDNA EST EMBL:M89239
comes from this gene; cDNA EST yk9e6.3 comes from this
gene~cDNA EST yk9e6.5 comes>
Length = 810
Score = 613 bits (1563), Expect = e-174
Identities = 338/800 (42%), Positives = 478/800 (59%), Gaps = 94/800 (11%)
Query: 23 IVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLG 82
+V L + M ELG+ GD V + G K ++ ++ I+M+ +R N LG
Sbjct: 44 MVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLG 103
Query: 83 DEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVG-----------RPVVRGDYI 131
D V++ A++ K+V + P + D +E L L RPV +GD
Sbjct: 104 DVVSISSAQLEYGKRVHVLPID------DTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIF 157
Query: 132 KVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVTYEDIGGLKDV 190
V + + F V T P+ + T + P+K E E+ V Y+D+GG++
Sbjct: 158 TVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRKQ 217
Query: 191 IEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGP 250
+ +I+EM+ELPL+HP+LF+ +G++PP+G+LL+GPPGTGKTL+A+AVANE A+F INGP
Sbjct: 218 LAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVANETGAFFFLINGP 277
Query: 251 EIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALM 310
EIMSK GESE LR+ F E E+N+PAI+FIDEIDAIAPKR + GEVEKR+V+QLL LM
Sbjct: 278 EIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREKAHGEVEKRIVSQLLTLM 337
Query: 311 DGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEP 370
DGLK+R V+VI ATNRP++ID ALRR GRFDREI++G+PD GR
Sbjct: 338 DGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGR--------------- 382
Query: 371 DFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLID 430
L+IL + K + +D
Sbjct: 383 -------LEILRIHTKNMKLGEDVD----------------------------------- 400
Query: 431 KLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRD 490
L+++A+ HGFVGADLA+L EAA+ +R + ID E +TI EVL+ L VT +
Sbjct: 401 --LEQVANECHGFVGADLASLCSEAAIQQIREKME--LIDLEDDTIDAEVLNSLAVTMEN 456
Query: 491 FYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP 550
F A+ PSALRE ++E PN W DIGGL++VK+EL+E V++P+++PE + +G+ P
Sbjct: 457 FRFAMGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPS 516
Query: 551 KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAP 610
+G+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+R++F KAR AAP
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAP 576
Query: 611 TVIFIDEIDAIAPRRG---TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDP 667
V+F DE+D+IA RG D DR+INQ+LTEMDG+ V +I ATNRPDI+DP
Sbjct: 577 CVLFFDELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDP 636
Query: 668 ALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVC 727
A+LRPGR D+LI +P PDE +R +IFK R PL+ D+DL LA+ T G++GAD+ +C
Sbjct: 637 AVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEIC 696
Query: 728 REAAMIAMRRALEKGIIKPGMKASEIRR------------LAKVTMKDFEEALRKIGPSV 775
+ A +A+R ++E+ I + + R + ++T FEEA++ SV
Sbjct: 697 QRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKFARRSV 756
Query: 776 SKETMEYYRKIQEQFKQARG 795
+ + Y + +Q+RG
Sbjct: 757 TDNDIRKYEMFAQTLQQSRG 776
>sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN (PEPTIDE VQY)]
>gi|164726|gb|AAA31142.1| (M30143) valosin-containing
protein [Sus scrofa]
Length = 806
Score = 612 bits (1561), Expect = e-174
Identities = 352/806 (43%), Positives = 487/806 (59%), Gaps = 81/806 (10%)
Query: 8 KLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGII 67
+L V A D +V L + M EL + GD V + G K A+ + I
Sbjct: 25 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82
Query: 68 RMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG- 122
RM+ +R N V LGD ++++ +V+ K++ + P + G F +L +
Sbjct: 83 RMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 142
Query: 123 -RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVT 180
RP+ +GD V + + F V T PS + T + +P+K E E+ V
Sbjct: 143 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 202
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
Y+DIGG + + +I+EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
A+F INGPEIMSK GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE+
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
R+V+QLL LMDGLK R VIV+ ATNRP++IDPALR
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR------------------------ 358
Query: 361 IHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAEL 420
R G+F + +D I + + EI Q+ K + +L
Sbjct: 359 -------------------------RFGRFDREVDIGIPDA--TGRLEILQIHTK-NMKL 390
Query: 421 YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV 480
D+V L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV
Sbjct: 391 ADDVD-------LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEV 441
Query: 481 LDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPE 540
++ L VT DF AL PSALRE ++EVP V W+DIGGLEDVK+EL++ V++P+++P+
Sbjct: 442 MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPD 501
Query: 541 AFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIRE 600
F +G+TP KG+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+RE
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 561
Query: 601 IFRKARQAAPTVIFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIA 657
IF KARQAAP V+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I
Sbjct: 562 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRPDI+DPA+LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G
Sbjct: 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNG 681
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALR 769
++GAD+ +C+ A +A+R ++E I + M+ E + ++ FEEA+R
Sbjct: 682 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741
Query: 770 KIGPSVSKETMEYYRKIQEQFKQARG 795
SVS + Y + +Q+RG
Sbjct: 742 FARRSVSDNDIRKYEMFAQTLQQSRG 767
>sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) >gi|104084|pir||S19738
transitional endoplasmic reticulum ATPase (EC 3.6.1.-)
97K chain - African clawed frog
>gi|64966|emb|CAA38146.1| (X54240) p97 subunit of 15S
Mg(2+)- ATPase [Xenopus laevis]
Length = 805
Score = 610 bits (1555), Expect = e-173
Identities = 348/791 (43%), Positives = 480/791 (59%), Gaps = 79/791 (9%)
Query: 23 IVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLG 82
+V L + M EL + GD V + G K A+ + IRM+ +R N V LG
Sbjct: 38 VVSLSQAKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLG 97
Query: 83 DEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG--RPVVRGDYIKVGVL 136
D ++++ +V+ K+V + P + G F +L + RP+ +GD V
Sbjct: 98 DVISIQPCPDVKYGKRVHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGG 157
Query: 137 GQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVTYEDIGGLKDVIEKIR 195
+ + F V T PS + T + +P+K E E+ V Y+DIGG + + +I+
Sbjct: 158 MRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIK 217
Query: 196 EMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSK 255
EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE A+F INGPEIMSK
Sbjct: 218 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277
Query: 256 YYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKS 315
GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE+R+V+QLL LMDGLK
Sbjct: 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337
Query: 316 RGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKD 375
R VIV+ ATNRP++IDPALR
Sbjct: 338 RAHVIVMAATNRPNSIDPALR--------------------------------------- 358
Query: 376 DVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDE 435
R G+F + +D I + + EI Q+ K + +L D+V L++
Sbjct: 359 ----------RFGRFDREVDIGIPD--STGRLEILQIHTK-NMKLSDDVD-------LEQ 398
Query: 436 LADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL 495
+A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV++ L VT DF L
Sbjct: 399 VANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFRWGL 456
Query: 496 KMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILL 555
PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+ F +G+TP KG+L
Sbjct: 457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLF 516
Query: 556 YGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFI 615
YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+REIF KARQAAP V+F
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576
Query: 616 DEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRP 672
DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRP
Sbjct: 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGATNRPDIIDPAILRP 636
Query: 673 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 732
GR D+LI +P PDEK+R I K + R P+A DVD+ LA+ T G++GAD+ +C+ A
Sbjct: 637 GRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACK 696
Query: 733 IAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYR 784
+A+R ++E I + M+ E + ++ FEEA+R SVS + Y
Sbjct: 697 LAIRESIENEIRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRLARRSVSDNDIRKYE 756
Query: 785 KIQEQFKQARG 795
+ +Q+RG
Sbjct: 757 MFAQTLQQSRG 767
>gb|AAC02215.1| (AF044488) valosin-containing protein homolog [Trypanosoma brucei]
Length = 780
Score = 590 bits (1504), Expect = e-167
Identities = 335/787 (42%), Positives = 466/787 (58%), Gaps = 77/787 (9%)
Query: 23 IVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLG 82
+V L+ K M EL I GD V++ G KN + I E+ G I ++ R+N + LG
Sbjct: 28 VVVLNAKRMDELSIFRGDTVKLKGKKNRSTICIAMSDENCPEGSIMVNKVTRRNIRILLG 87
Query: 83 DEVTVRK-AEVREAKKVTLAPTEPI---RFGRDFVEWLHERLVG--RPVVRGDYIKVGVL 136
D +TV + V V + P + G F +L + RPV GD
Sbjct: 88 DLITVSSHSNVPYGNHVHVLPIDDTVKNLTGDLFETFLKPYFLEAYRPVKTGDLFICRGA 147
Query: 137 GQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIRE 196
+ + F V P + T + P++ ++ V Y+DIGG + + +IRE
Sbjct: 148 MRSVEFKVVEVDPGDCCIVAPETVVHCEGDPIRREDEERLDDVGYDDIGGCRRQLVQIRE 207
Query: 197 MIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKY 256
M+ELP++HPELF+ +GI+PP+G+L+YGPPG+GKTL+A+AVANE A+F INGPEIMSK
Sbjct: 208 MVELPIRHPELFKSIGIKPPRGILMYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKM 267
Query: 257 YGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSR 316
GESE LR F E+E+NAPAIIFIDEID+IAPKR + GEVEKR+V+QLL LMDGLK R
Sbjct: 268 AGESEGNLRNAFVESEKNAPAIIFIDEIDSIAPKREKAQGEVEKRIVSQLLTLMDGLKGR 327
Query: 317 GKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDD 376
+VIV+ ATNRP+AIDPALR
Sbjct: 328 SQVIVMAATNRPNAIDPALR---------------------------------------- 347
Query: 377 VLKILEDFKREGKFTKIIDKAI-EEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDE 435
R G+F + ID + +E+ + + I K+D + +++
Sbjct: 348 ---------RFGRFDREIDIGVPDEIGRLEILRIHTKNMKLDPNVD-----------VEK 387
Query: 436 LADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL 495
+A +HG+VGADLA L EAAM +R + +D++ ETI EVLD + VT F +AL
Sbjct: 388 IAKDSHGYVGADLAQLCTEAAMQCVRE--KMAVVDWDDETIDAEVLDSMSVTNNHFLDAL 445
Query: 496 KMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILL 555
+ PSALRE +E PNV W D+GGL DVK+EL+E V++P+++P F+ YGI+ PKG+L
Sbjct: 446 SKMNPSALRETQVETPNVTWSDVGGLLDVKRELQELVQYPVEFPWKFEKYGISAPKGVLF 505
Query: 556 YGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFI 615
YGPPG GKTLLAKA+ATE QANFI+++GPE+L+ W GESE N+R++F KAR AAP V+F
Sbjct: 506 YGPPGCGKTLLAKAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFF 565
Query: 616 DEIDAIAPRRG-TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
DE+D++A RG + +DR+INQ+LTEMDG+ V +I ATNRPD+LDPA++RPGR
Sbjct: 566 DELDSVARSRGHSGDGGASDRVINQILTEMDGMNSKKNVFIIGATNRPDVLDPAVMRPGR 625
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
D+LI +P PD+ +R I K R PLA DVDL +LA T G++GAD+A +C+ A +A
Sbjct: 626 LDQLIYIPLPDKASRVAILKASFRKSPLAPDVDLDQLAAATHGFSGADLAGICQRACKLA 685
Query: 735 MRRALEKGIIKPGMKAS-------EIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQ 787
+R ++ K I +A+ +I + ++T EEA+R SVS + Y
Sbjct: 686 IRESIAKEIQLEEARANGVLNEDQDIDPVPQITRLHVEEAMRGARRSVSDADIRKYELFA 745
Query: 788 EQFKQAR 794
+Q+R
Sbjct: 746 TSLQQSR 752
>sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 1 (P97/CDC48
HOMOLOG 1) >gi|7495467|pir||T18970 hypothetical protein
C06A1.1 - Caenorhabditis elegans
>gi|3874005|emb|CAA90050.1| (Z49886) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=658.1,
E-value=1.5e-194, N=2~cDNA EST yk76f10.5 comes from this
gene; cDNA EST yk3h5.5 comes from this gene~cDNA EST
yk6d7.5 comes f>
Length = 809
Score = 589 bits (1501), Expect = e-167
Identities = 333/820 (40%), Positives = 482/820 (58%), Gaps = 98/820 (11%)
Query: 5 KEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGL 64
K +L V + Q D ++ + + M ELG+ GD V + G K ++A E
Sbjct: 28 KPNRLIVDQSEQDD--NSVIAVSQAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPN 85
Query: 65 GIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIRFGRDFVEWLHERLVG- 122
+RM+ +R N + LGD V++ A + ++ + P + D +E L L
Sbjct: 86 EKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPID------DTIEGLTGNLFDV 139
Query: 123 ----------RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EV 171
RP+ +GD V + + F V T+P+ ++ T + P+K E
Sbjct: 140 FLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREE 199
Query: 172 EKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTL 231
E+ + Y+D+GG++ + +I+EM+ELPL+HP+LF+ +GI+PP+G+LL+GPPGTGKTL
Sbjct: 200 EEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTL 259
Query: 232 LAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR 291
+A+AVANE ++F INGPE+MSK GESE LR+ F+E E+N PAI+FIDEIDAIAPKR
Sbjct: 260 IARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKR 319
Query: 292 SEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD 351
+ GEVE+R+V+QLL LMDG+K R ++VI ATNRP++ID ALRR GRFDREI++
Sbjct: 320 EKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDI---- 375
Query: 352 RQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQ 411
G+P D + LE + K K+ D
Sbjct: 376 -------------GIP--------DAVGRLEILRIHTKNMKLAD---------------- 398
Query: 412 VLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDF 471
D L+++A+ HGFVGADLA+L EAA+ +R + ID
Sbjct: 399 ------------------DVDLEQIANECHGFVGADLASLCSEAALQQIREKME--LIDL 438
Query: 472 EAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 531
E + I EVL+ L VT +F A PSALRE ++E PN W DIGGL++VK+EL+E
Sbjct: 439 EDDQIDAEVLNSLAVTMENFRFAQGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQEL 498
Query: 532 VEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWV 591
V++P+++PE + +G+ P +G+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W
Sbjct: 499 VQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 558
Query: 592 GESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR----GTDVNRVTDRIINQLLTEMDGI 647
GESE N+R++F KAR AAP V+F DE+D+IA R G D +DR+INQ+LTEMDG+
Sbjct: 559 GESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGM 618
Query: 648 QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVD 707
V +I ATNRPDI+DPA+LRPGR D+LI +P PDE +R +I K R PL+ D+D
Sbjct: 619 NAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLD 678
Query: 708 LKELARRTEGYTGADIAAVCREAAMIAMRRALEKGII------------KPGMKASEIRR 755
L LA+ T G++GAD+ +C+ A +A+R ++EK I + M+ +
Sbjct: 679 LTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDP 738
Query: 756 LAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
+ ++T FEEA++ SV+ + Y + +Q+RG
Sbjct: 739 VPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRG 778
>gi|6320077 microsomal ATPase; Cdc48p [Saccharomyces cerevisiae]
>gi|1705679|sp|P25694|CC48_YEAST CELL DIVISION CONTROL
PROTEIN 48 >gi|2118116|pir||S67669 transitional
endoplasmic reticulum ATPase [validated] - yeast
(Saccharomyces cerevisiae) >gi|1431189|emb|CAA98694.1|
(Z74174) ORF YDL126c [Saccharomyces cerevisiae]
>gi|1449400|emb|CAA40276.1| (X56956) CDC48p
[Saccharomyces cerevisiae]
Length = 835
Score = 585 bits (1493), Expect = e-166
Identities = 344/824 (41%), Positives = 486/824 (58%), Gaps = 95/824 (11%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
+KK+ L V A D ++ ++ TM +L + GD V + G K + ++
Sbjct: 30 KKKDNMLLVDDAINDD--NSVIAINSNTMDKLELFRGDTVLVKGKKRKDTVLIVLIDDEL 87
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPT----EPIRFGRDFVEWLH 117
G R++ +R N + LGD VT+ +++ A ++++ P E I G F +L
Sbjct: 88 EDGACRINRVVRNNLRIRLGDLVTIHPCPDIKYATRISVLPIADTIEGIT-GNLFDVFLK 146
Query: 118 ERLVG--RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPV-KEVEKR 174
V RPV +GD+ V +++ F V +P + + T + +P+ +E E+
Sbjct: 147 PYFVEAYRPVRKGDHFVVRGGMRQVEFKVVDVEPEEYAVVAQDTIIHWEGEPINREDEEN 206
Query: 175 MTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAK 234
V Y+DIGG + + +IREM+ELPL+HP+LF+ +GI+PP+GVL+YGPPGTGKTL+A+
Sbjct: 207 NMNEVGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMAR 266
Query: 235 AVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV 294
AVANE A+F INGPE+MSK GESE LR+ F+EAE+NAPAIIFIDEID+IAPKR +
Sbjct: 267 AVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKT 326
Query: 295 TGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354
GEVE+RVV+QLL LMDG+K+R V+VI ATNRP++IDPALR
Sbjct: 327 NGEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSIDPALR------------------ 368
Query: 355 RKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLK 414
R G+F + +D I + + E+ ++
Sbjct: 369 -------------------------------RFGRFDREVDIGIPDA--TGRLEVLRIHT 395
Query: 415 KIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAE 474
K + +L D+V L+ LA THG+VGAD+A+L EAAM +R + ID + +
Sbjct: 396 K-NMKLADDVD-------LEALAAETHGYVGADIASLCSEAAMQQIRE--KMDLIDLDED 445
Query: 475 TIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEW 534
I EVLD L VT +F AL PSALRE ++E NV WDD+GGL+++K+EL+E VE+
Sbjct: 446 EIDAEVLDSLGVTMDNFRFALGNSNPSALRETVVESVNVTWDDVGGLDEIKEELKETVEY 505
Query: 535 PLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGES 594
P+ +P+ + +G++P KG+L YGPPGTGKTLLAKAVATE ANFI+V+GPE+LS W GES
Sbjct: 506 PVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGES 565
Query: 595 EKNIREIFRKARQAAPTVIFIDEIDAIAPRRG---TDVNRVTDRIINQLLTEMDGIQENA 651
E NIR+IF KAR AAPTV+F+DE+D+IA RG D +DR++NQLLTEMDG+
Sbjct: 566 ESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKK 625
Query: 652 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKEL 711
V VI ATNRPD +DPA+LRPGR D+LI VP PDE AR I R PL ++L +
Sbjct: 626 NVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAI 685
Query: 712 ARRTEGYTGADIAAVCREAAMIAMRRALEK-----------------GIIKPGMKAS--- 751
A+ T+G++GAD+ + + AA A++ ++E + G KA
Sbjct: 686 AKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQHEAEKEVKVEGEDVEMTDEGAKAEQEP 745
Query: 752 EIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
E+ + +T + F EA++ SVS + Y +Q K +RG
Sbjct: 746 EVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRG 789
>gb|AAD27852.1|AF132553_1 (AF132553) BcDNA.GM02885 [Drosophila melanogaster]
>gi|7303816|gb|AAF58863.1| (AE003831) TER94 gene product
[alt 2] [Drosophila melanogaster]
Length = 801
Score = 578 bits (1475), Expect = e-164
Identities = 335/793 (42%), Positives = 469/793 (58%), Gaps = 82/793 (10%)
Query: 23 IVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLG 82
+V L + M EL + GD V + G + + + IRM+ +R N V L
Sbjct: 35 VVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLS 94
Query: 83 DEVTVRKA-EVREAKKVTLAP----TEPIRFGRDFVEWLHERLVG--RPVVRGDYIKVGV 135
D V+V+ +V+ K+V + P TE + G F +L + RP+ GD V
Sbjct: 95 DVVSVQSCPDVKYGKRVRILPIDESTEGVT-GNLFEIYLKPYFLEAYRPIHMGDNFIVRA 153
Query: 136 LGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVTYEDIGGLKDVIEKI 194
+ + F V T P + T P+K E E+ V Y+DIGG + + +I
Sbjct: 154 AMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQI 213
Query: 195 REMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMS 254
+EM+ELPL+HP LF+ +G++PP+G+L+YGPPGTGKTL+A+AVANE A+F INGPEIMS
Sbjct: 214 KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 273
Query: 255 KYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLK 314
K GESE LR+ F+EAE+N+PAIIFIDEIDAIAPKR + GEVE+R+V+QLL LMDG+K
Sbjct: 274 KLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMK 333
Query: 315 SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRK 374
+IV+ ATNRP++IDPALR
Sbjct: 334 KSSHLIVMAATNRPNSIDPALR-------------------------------------- 355
Query: 375 DDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLD 434
R G+F + ID I + + E+ ++ K + +L+D+V L+
Sbjct: 356 -----------RFGRFDREIDIGIPDA--TGRLEVLRIHTK-NMKLHDDVD-------LE 394
Query: 435 ELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEA 494
++A +HG VGADLA+L EAA+ +R + ID E + I EVL L VT +F A
Sbjct: 395 QIAAESHGHVGADLASLCSEAALQQIRE--KMDLIDLEDDKIDAEVLASLAVTMENFRYA 452
Query: 495 LKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGIL 554
+ PSALRE ++EVPN W DIGGLE VK+EL+E V++P+++P+ F +G+ P +G+L
Sbjct: 453 MTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVL 512
Query: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIF 614
YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W GESE N+R+IF KAR AAP V+F
Sbjct: 513 FYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLF 572
Query: 615 IDEIDAIAPRRG---TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLR 671
DE+D+IA RG D DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LR
Sbjct: 573 FDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 632
Query: 672 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 731
PGR D+LI +P PD+K+R I K + R PLA +VDL +A+ T+G++GAD+ +C+ A
Sbjct: 633 PGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRAC 692
Query: 732 MIAMRRALEKGIIK---------PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEY 782
+A+R+A+E I + M E + ++T FEEA++ SVS +
Sbjct: 693 KLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRK 752
Query: 783 YRKIQEQFKQARG 795
Y + +Q+RG
Sbjct: 753 YEMFAQTLQQSRG 765
>gb|AAF74998.1| (AF199367) cdc48-like protein [Entamoeba histolytica]
Length = 772
Score = 576 bits (1469), Expect = e-163
Identities = 341/813 (41%), Positives = 471/813 (56%), Gaps = 93/813 (11%)
Query: 5 KEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGL 64
K+ +L V + + D+ IV ++ + M EL GD + I G + + + E
Sbjct: 22 KKHRLIVEESKEDDMS--IVYMNPQRMEELNFFEGDSILIKGKRRKSTVCIVMAEEGLTE 79
Query: 65 GIIRMDGTIRKNAGVGLGDEVTVRKAE-VREAKKVTLAPTEPIRFGRDFVEWLHERL--- 120
+IR+ R N V LGD V V + V A K+ + P + D VE + L
Sbjct: 80 NMIRLHRMTRYNLRVKLGDVVGVETPQNVPYAIKIHVLPID------DTVEGITGDLFET 133
Query: 121 --------VGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVE 172
V RP+ + D+ + + F V PS + T + +P+K +
Sbjct: 134 YIRPYFSDVFRPIKKDDHFLCHGGMRTVEFKVVDIDPSPYALVVNDTIIHCEGEPIKRED 193
Query: 173 KRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLL 232
+ + Y+DIGG + + +IREM+ELPL+HP+LF+ +GI+PPKGVLLYGPPG GKT++
Sbjct: 194 EERPDDLGYDDIGGCRRQLGQIREMVELPLRHPQLFQAIGIKPPKGVLLYGPPGCGKTMI 253
Query: 233 AKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRS 292
A+AVANE + I INGPEIMSK GESE LRE F EAE+NAPA+IFIDEID+IAPKR
Sbjct: 254 ARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPALIFIDEIDSIAPKRD 313
Query: 293 EVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
+ GEVE+RVVAQLL LMDG+KSR VIV+ ATNRP+AID ALR
Sbjct: 314 KAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSALR---------------- 357
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQV 412
R G+F + ID + + ++ EI +
Sbjct: 358 ---------------------------------RFGRFDREIDIGVPD--ETGRLEILNI 382
Query: 413 LKKIDAELYDEVKTRLIDKL-LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDF 471
K K ++ D + L ++A THG+VGADLA L EAAM +R + +D
Sbjct: 383 HTK---------KMKIADDVDLLQIAKETHGYVGADLAQLCTEAAMLCIRENMAH--VDV 431
Query: 472 EAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 531
EA++IP EVL+ +KVT F +K PSALRE ++E+PNV W+DIGGLEDVK+EL+E
Sbjct: 432 EADSIPVEVLNGMKVTMEHFRNVMKTCTPSALRETVVEIPNVKWEDIGGLEDVKRELKEV 491
Query: 532 VEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWV 591
V++P+++P+ F +G+ P KG+L +GPPG GKTLLAKAVA++ +ANFI+++GPE+L+ W
Sbjct: 492 VQYPVEFPDKFTKFGMEPSKGVLFFGPPGCGKTLLAKAVASQCKANFISIKGPELLTMWY 551
Query: 592 GESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG---TDVNRVTDRIINQLLTEMDGIQ 648
GESE N+R++F KARQAAP V+F DE+D+I RG D DRI+NQLLTEMDG+
Sbjct: 552 GESEANVRDVFDKARQAAPCVLFFDELDSIGRARGGGAGDAGGSADRILNQLLTEMDGVG 611
Query: 649 ENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDL 708
+ V +I ATNRPDILDPALLRPGR D+L+ +P PD+ +R I + R P+A DVDL
Sbjct: 612 KKKQVFIIGATNRPDILDPALLRPGRLDQLLFIPLPDKASRISILQAKLRNSPVAPDVDL 671
Query: 709 KELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS-------EIRRLAKVTM 761
+A TE ++GAD+A + + A A+R + + + KA+ EI + +
Sbjct: 672 DWIAEHTENFSGADLAEIVQRACKEAIRDTINELAVAEAEKAAQPEDQKMEIEVKPMIKV 731
Query: 762 KDFEEALRKIGPSVSKETMEYYRKIQEQFKQAR 794
K F ALR SVS ++ Y E Q R
Sbjct: 732 KHFNAALRDARRSVSDIEIQRYNMYAETLLQRR 764
>gb|AAC27447.1| (AF047037) transitional endoplasmic reticulum ATPase TER94
[Drosophila melanogaster]
Length = 801
Score = 574 bits (1464), Expect = e-162
Identities = 333/793 (41%), Positives = 468/793 (58%), Gaps = 82/793 (10%)
Query: 23 IVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLG 82
+V L + M EL + GD V + G + + + IRM+ +R N V L
Sbjct: 35 VVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLS 94
Query: 83 DEVTVRKA-EVREAKKVTLAP----TEPIRFGRDFVEWLHERLVG--RPVVRGDYIKVGV 135
D V+V+ +V+ K+V + P TE + G F +L + RP+ GD V
Sbjct: 95 DVVSVQSCPDVKYGKRVRILPIDESTEGVT-GNLFEIYLKPYFLEAYRPIHMGDNFIVRA 153
Query: 136 LGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVTYEDIGGLKDVIEKI 194
+ + F V T P + T P+K E E+ V Y+DIGG + + +I
Sbjct: 154 AMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQI 213
Query: 195 REMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMS 254
+EM+ELPL+HP LF+ +G++PP+G+L+YGPPGTGKTL+A+AVANE A+F INGPEIMS
Sbjct: 214 KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 273
Query: 255 KYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLK 314
K GESE LR+ F+EAE+N+PAIIFIDEIDAIAPKR + GEVE+R+V+QLL LMDG+K
Sbjct: 274 KLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMK 333
Query: 315 SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRK 374
+IV+ ATNRP++IDPALR
Sbjct: 334 KSSHLIVMAATNRPNSIDPALR-------------------------------------- 355
Query: 375 DDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLD 434
R G+F + ID I + + E+ ++ K + +L+D+V L+
Sbjct: 356 -----------RFGRFDREIDIGIPDA--TGRLEVLRIHTK-NMKLHDDVD-------LE 394
Query: 435 ELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEA 494
++A +HG VGADLA+L EAA+ +R + ID E + I EVL L VT +F A
Sbjct: 395 QIAAESHGHVGADLASLCSEAALQQIRE--KMDLIDLEDDKIDAEVLASLAVTMENFRYA 452
Query: 495 LKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGIL 554
+ PSALRE ++EVPN W DIGGLE VK+EL+E V++P+++P+ F +G+ P +G+L
Sbjct: 453 MTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVL 512
Query: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIF 614
YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W GESE N+R+IF KAR AAP V+F
Sbjct: 513 FYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPCVLF 572
Query: 615 IDEIDAIAPRRG---TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLR 671
DE+D+IA RG D DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LR
Sbjct: 573 FDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILR 632
Query: 672 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 731
PGR D+LI +P PD+K+R I K + R LA +VDL +A+ T+G++GAD+ +C+ A
Sbjct: 633 PGRLDQLIYIPLPDDKSREAILKANLRKSALAKEVDLTYIAKVTQGFSGADLTEICQRAC 692
Query: 732 MIAMRRALEKGIIK---------PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEY 782
+A+R+A+E I + M E + ++T F+EA++ SVS +
Sbjct: 693 KLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFQEAMKFARRSVSDNDIRK 752
Query: 783 YRKIQEQFKQARG 795
Y + +Q+RG
Sbjct: 753 YEMFAQTLQQSRG 765
>gb|AAF17568.1|AF202034_1 (AF202034) endoplasmic reticulum membrane fusion protein
[Drosophila melanogaster]
Length = 799
Score = 560 bits (1428), Expect = e-158
Identities = 329/791 (41%), Positives = 463/791 (57%), Gaps = 80/791 (10%)
Query: 23 IVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLG 82
+V L + M EL + GD V + G + + + IRM+ +R N V L
Sbjct: 35 VVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLS 94
Query: 83 DEVTVRKA-EVREAKKVTLAP----TEPIRFGRDFVEWLHERLVG--RPVVRGDYIKVGV 135
D V+V+ +V+ K+V + P TE + G F +L + GD V
Sbjct: 95 DVVSVQSCPDVKYGKRVRILPIDESTEGVT-GNLFEIYLKPYFPRGLSAIHMGDNFIVRA 153
Query: 136 LGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGVTYEDIGGLKDVIEKI 194
+ + F V T P + T P+K E E+ V Y+DIGG + + +I
Sbjct: 154 AMRPIEFKVVLTDPEPYCIVAPETVIFCDGDPIKREEEEESLNAVGYDDIGGCRKQLAQI 213
Query: 195 REMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMS 254
+EM+ELPL+HP LF+ +G++PP+G+L+YGPPGTGKTL+A+AVANE A+F INGPEIMS
Sbjct: 214 KEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 273
Query: 255 KYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLK 314
K GESE LR+ F+EAE+N+PAIIFIDEIDAIAPKR + GEVE+R+V+QLL LMDG+K
Sbjct: 274 KLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHGEVERRIVSQLLTLMDGMK 333
Query: 315 SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRK 374
+IV+ ATNRP++IDPALR
Sbjct: 334 KSSHLIVMAATNRPNSIDPALR-------------------------------------- 355
Query: 375 DDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLD 434
R G+F + ID I + + E+ ++ K + +L+D+V L+
Sbjct: 356 -----------RFGRFDREIDIGIPDA--TGRLEVLRIHTK-NMKLHDDVD-------LE 394
Query: 435 ELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEA 494
++A +HG VGADLA+L EAA+ +R + ID E + I EVL L VT +F A
Sbjct: 395 QIAAESHGHVGADLASLCSEAALQQIRE--KMDLIDLEDDKIDAEVLASLAVTMENFRYA 452
Query: 495 LKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGIL 554
+ PSALRE ++EVPN W DIGGLE VK+EL+E V++P+++P+ F +G+ P +G+L
Sbjct: 453 MTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVL 512
Query: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIF 614
YGPPG GKTL AKA+A E QANFI+V+GPE+L+ W GESE N+R+IF K AAP V+F
Sbjct: 513 FYGPPGCGKTLPAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKGPSAAPCVLF 572
Query: 615 IDEIDAIAPRRGTDVN--RVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRP 672
DE+D+IA R +V DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+LRP
Sbjct: 573 FDELDSIAKSRCGNVGDCGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 632
Query: 673 GRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAM 732
GR D+LI +P PD+K+R I K + R LA +VDL +A+ T+G++GAD+ +C+ A
Sbjct: 633 GRLDQLIYIPLPDDKSREAILKANLRKFALAKEVDLTYIAKVTQGFSGADLTEICQRACK 692
Query: 733 IAMRRALEKGIIKPGMKA--------SEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYR 784
+A+R+A+E I + +A E + ++T FEEA++ SVS + Y
Sbjct: 693 LAIRQAIEAEIRREKERAENQNSAMDDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYE 752
Query: 785 KIQEQFKQARG 795
F+Q+RG
Sbjct: 753 MFAPDFEQSRG 763
>gi|10946660 spermatogenesis associated factor [Mus musculus]
>gi|4105619|gb|AAD02481.1| (AF049099) SPAF [Mus
musculus]
Length = 892
Score = 555 bits (1416), Expect = e-157
Identities = 299/640 (46%), Positives = 404/640 (62%), Gaps = 83/640 (12%)
Query: 155 ITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIE 214
I+ T N+ + E+ VTY+ IGGL ++ IRE+IELPLK PELF+ GI
Sbjct: 325 ISSTTRINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIP 384
Query: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
P+G+LLYGPPGTGKT++A+AVANE AY INGPEI+SK+YGE+E RLR++F EA
Sbjct: 385 APRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLR 444
Query: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRG---KVIVIGATNRPDAI 331
P+IIFIDE+DA+ PKR EVEKRVVA LL LMDG+ S G +V+V+GATNRP A+
Sbjct: 445 HPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQAL 504
Query: 332 DPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFT 391
D ALRRPGRFD+EIE+G+P+ Q R L IL+ R
Sbjct: 505 DAALRRPGRFDKEIEIGIPNAQDR----------------------LDILQKLLRR---- 538
Query: 392 KIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAAL 451
+P +L K + L LA+ HG+VGADL AL
Sbjct: 539 -----------------VPHLLTKAE---------------LLRLANNAHGYVGADLKAL 566
Query: 452 AREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVP 511
EA + ALRR++R+ + +V +K+T DF + + + PSA+REV I+VP
Sbjct: 567 CNEAGLHALRRVLRK-----QPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVP 621
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
NV W DIGGLE++K +L++AVEWPLK+P++F GI PPKG+LLYGPPG KT++AKA+A
Sbjct: 622 NVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALA 681
Query: 572 TESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD--V 629
ES NF+A++GPE+++K+VGESE+ +REIFRKAR AP++IF DE+DA+A RG+
Sbjct: 682 NESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGA 741
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
V DR++ QLLTEMDGI++ V V+AATNRPD +D AL+RPGR DR+I VP PD R
Sbjct: 742 GNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATR 801
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMK 749
EI + MP++++VDL EL +T+ Y+GA+I AVC+EAA++A+ ++ I MK
Sbjct: 802 REILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAALLALEENIKADCI---MK 858
Query: 750 ASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQ 789
+ F EAL + P + + +Y QE+
Sbjct: 859 ------------RHFTEALSIVTPRIPESLRRFYEDYQEK 886
Score = 216 bits (545), Expect = 7e-55
Identities = 115/236 (48%), Positives = 161/236 (67%), Gaps = 9/236 (3%)
Query: 150 SGVVQITEFTDF-----NISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKH 204
+G+V+IT DF +I ++EV + V++ DIGGL+++ K+++ +E PLKH
Sbjct: 591 AGMVKIT-LNDFLQGMNDIRPSAMREVAIDVPN-VSWSDIGGLENIKLKLKQAVEWPLKH 648
Query: 205 PELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERL 264
P+ F ++GI+PPKGVLLYGPPG KT++AKA+ANE+ F+AI GPE+M+KY GESE +
Sbjct: 649 PKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAV 708
Query: 265 REVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGEVEKRVVAQLLALMDGLKSRGKVIVI 322
RE+F++A AP+IIF DE+DA+A +R S G V RV+AQLL MDG++ V V+
Sbjct: 709 REIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVL 768
Query: 323 GATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVL 378
ATNRPD ID AL RPGR DR I V +PD R+EIL + MPI + D+++
Sbjct: 769 AATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELV 824
>gi|6323429 homology to the CDC48 gene product; Afg2p [Saccharomyces
cerevisiae] >gi|416590|sp|P32794|AFG2_YEAST AFG2 PROTEIN
>gi|481664|pir||S39110 valosin-containing protein
homolog AFG2 - yeast (Saccharomyces cerevisiae)
>gi|295573|gb|AAC37367.1| (L14615) AFG2 [Saccharomyces
cerevisiae] >gi|625113|gb|AAB82355.1| (U19729) Afg2p
[Saccharomyces cerevisiae]
Length = 780
Score = 523 bits (1332), Expect = e-147
Identities = 306/798 (38%), Positives = 444/798 (55%), Gaps = 127/798 (15%)
Query: 31 MRELGISPGDVVEI--IGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLGDEVTVR 88
+ L I+PG + IG IA E + +I + TIR + LGD + ++
Sbjct: 58 LSSLEINPGSFCTVGKIGENGILVIARAGDEEVHPVNVITLSTTIRSVGNLILGDRLELK 117
Query: 89 KAEVRE--AKKVTLAPTEPIRFGRDFVEWLHERLVGRPVVRGDYIKVGVLGQELT----- 141
KA+V+ A KVT+ + G + +E + E+++ + + I G++ Q L
Sbjct: 118 KAQVQPPYATKVTVGSLQ----GYNILECMEEKVIQKLLDDSGVIMPGMIFQNLKTKAGD 173
Query: 142 ----FVVTATQPSGVVQITEF---------------------------TDFNISEKPVKE 170
V+T + +++ T S++
Sbjct: 174 ESIDVVITDASDDSLPDVSQLDLNMDDMYGGLDNLFYLSPPFIFRKGSTHITFSKETQAN 233
Query: 171 VEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKT 230
+ + ++Y +GGL IE ++ IE+PL P LF G+ PP+G+LL+GPPGTGKT
Sbjct: 234 RKYNLPEPLSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKT 293
Query: 231 LLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK 290
+L + VAN +NA+ + INGP I+SKY GE+E LR++F EA + P+IIFIDEID+IAP
Sbjct: 294 MLLRVVANTSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPN 353
Query: 291 RS-EVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
R+ + +GEVE RVVA LL LMDG+ + GKV+VI ATNRP+++DPALRRPGRFD+E+E+G+
Sbjct: 354 RANDDSGEVESRVVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGI 413
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
PD R +I + + F R ++D
Sbjct: 414 PDVDARFDI---------------------LTKQFSRMSSDRHVLDS------------- 439
Query: 410 PQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRR-LIREGK 468
+ + +A THG+VGADL AL RE+ M ++R L +
Sbjct: 440 ---------------------EAIKYIASKTHGYVGADLTALCRESVMKTIQRGLGTDAN 478
Query: 469 IDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQEL 528
ID + LKVT +D A+ + PSA+RE+ +E+P V+W DIGG E++K ++
Sbjct: 479 IDKFS----------LKVTLKDVESAMVDIRPSAMREIFLEMPKVYWSDIGGQEELKTKM 528
Query: 529 REAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILS 588
+E ++ PL+ E F GI+ PKG+LLYGPPG KTL AKA+ATES NF+AV+GPEI +
Sbjct: 529 KEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGINFLAVKGPEIFN 588
Query: 589 KWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQ 648
K+VGESE+ IREIFRKAR AAP++IF DEIDA++P R + ++ LL E+DG++
Sbjct: 589 KYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSAANHVLTSLLNEIDGVE 648
Query: 649 ENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADD-VD 707
E GVV++AATNRPD +D ALLRPGR DR I V PD AR EI K T+ + VD
Sbjct: 649 ELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVD 708
Query: 708 LKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEA 767
L ELA RTEGY+GA++ +C+EA + A+ L+ +AKV ++ FE+A
Sbjct: 709 LHELADRTEGYSGAEVVLLCQEAGLAAIMEDLD---------------VAKVELRHFEKA 753
Query: 768 LRKIGPSVSKETMEYYRK 785
+ I ++ E + YY +
Sbjct: 754 FKGIARGITPEMLSYYEE 771
>pir||T40537 AAA family ATPase - fission yeast (Schizosaccharomyces pombe)
>gi|3116137|emb|CAA18886.1| (AL023288) AAA family ATPase
[Schizosaccharomyces pombe]
Length = 809
Score = 496 bits (1263), Expect = e-139
Identities = 267/612 (43%), Positives = 381/612 (61%), Gaps = 82/612 (13%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
+ VT+ IGGL+ I +IR+++ELP ++PELF+ I PP+GVLLYGPPGTGKT++ +AV
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAV 333
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
A EANA I+GP ++ KY GE+E RLR++F++A + P+IIFIDEIDA+APKR+E
Sbjct: 334 AAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVS 393
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E E R VA LL L+DG+ + GKV+VI ATNRP++ID
Sbjct: 394 EAESRAVATLLTLLDGMANAGKVVVIAATNRPNSID------------------------ 429
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
E +R G+ K I+ I + KS +I ++L
Sbjct: 430 -------------------------EALRRPGRLEKEIEIGIPD--KSARLDIIKLL--- 459
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETI 476
V + D L++LA TH +VGADLAA+ REAA+ A++R I + +T
Sbjct: 460 ----LSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRAIKRTI-----SLQKDTS 510
Query: 477 PREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPL 536
++ +++ +F AL V SA+RE ++E PNVHW DIGG E+VKQ+L+E+VEWPL
Sbjct: 511 GLDIFGAVQMDDLEF--ALSSVRQSAMREFMMESPNVHWSDIGGQEEVKQKLKESVEWPL 568
Query: 537 KYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEK 596
+ E F G+ PPKG+LLYGPPG KT+ AKA+ATE+ NFIAV+GPE+ K+VGESE+
Sbjct: 569 THGETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESER 628
Query: 597 NIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVI 656
+R++F+KARQA+P+VIF DEIDA+ RG D + +DR++ LL E+DGI+ V+V+
Sbjct: 629 AVRQVFQKARQASPSVIFFDEIDALTANRGEDNS--SDRVVAALLNELDGIEALRNVLVL 686
Query: 657 AATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTE 716
AATNRPD++DPAL+RPGR DRL+ V P+ +AR +I K+ M A+DVDL +A +TE
Sbjct: 687 AATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTE 746
Query: 717 GYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVS 776
G +GA++ A+C+EA +IAM LE ++ F+ AL + +++
Sbjct: 747 GCSGAEVVALCQEAGLIAMHEDLE---------------AKEICQAHFKTALLALRKAIT 791
Query: 777 KETMEYYRKIQE 788
++ +EYY E
Sbjct: 792 RDMLEYYASFSE 803
Score = 198 bits (499), Expect = 2e-49
Identities = 103/227 (45%), Positives = 145/227 (63%), Gaps = 5/227 (2%)
Query: 151 GVVQIT--EFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELF 208
G VQ+ EF ++ + ++E + V + DIGG ++V +K++E +E PL H E F
Sbjct: 516 GAVQMDDLEFALSSVRQSAMREFMME-SPNVHWSDIGGQEEVKQKLKESVEWPLTHGETF 574
Query: 209 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVF 268
+LG+ PPKGVLLYGPPG KT+ AKA+A E FIA+ GPE+ K+ GESE +R+VF
Sbjct: 575 SRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVF 634
Query: 269 KEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRP 328
++A + +P++IF DEIDA+ R E RVVA LL +DG+++ V+V+ ATNRP
Sbjct: 635 QKARQASPSVIFFDEIDALTANRGE--DNSSDRVVAALLNELDGIEALRNVLVLAATNRP 692
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKD 375
D IDPAL RPGR DR + VG P+ + RK+I++I M D D
Sbjct: 693 DMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLD 739
>pir||T51257 calmodulin-binding protein - Arabidopsis thaliana
>gi|9662988|emb|CAC00732.1| (AL390921)
calmodulin-binding protein [Arabidopsis thaliana]
Length = 1022
Score = 467 bits (1189), Expect = e-130
Identities = 260/624 (41%), Positives = 375/624 (59%), Gaps = 30/624 (4%)
Query: 178 GVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA 237
G +GGL +R++I+ L LG+ P KGVL++GPPGTGKT LA+ A
Sbjct: 381 GCEISKLGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTSLARTFA 439
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE 297
+ F ++NGPEI+S+Y GESE+ L EVF+ A PA++FID++DAIAP R E E
Sbjct: 440 RHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEE 499
Query: 298 VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKE 357
+ +R+VA LL LMDG+ V+VI ATNRPD+I+PALRRPGR DREIE+GVP R +
Sbjct: 500 LSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSD 559
Query: 358 ILQIHTRGMPIE-PDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
IL I RGM + + + + F + A + + ++ +
Sbjct: 560 ILHIILRGMRHSLSNIQVEQLAMATHGFVGADLSALCCEAAFVCLRRHLDQSSSSSNLPL 619
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGF-VGADLAALAREAAMAALRRLIREGKIDFEAET 475
+ E + + D D + + A + R ++ L+ + I +
Sbjct: 620 EEAPIAESSSNMSDISSDSSDSASSCITISATTSGAQRSFSLDETVSLVADD-IQNNGNS 678
Query: 476 IPREVLDE-----LKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELRE 530
++L + L V DF A + PSA+REV++EVP V+W+D+GG +VK +L E
Sbjct: 679 CSEQMLRKQGEHTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLME 738
Query: 531 AVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKW 590
AVEWP K+ +AFK G PP GIL++GPPG KTL+A+AVA+E++ NF+AV+GPE+ SKW
Sbjct: 739 AVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKW 798
Query: 591 VGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG--TDVNRVTDRIINQLLTEMDGIQ 648
VGESEK +R +F KAR AP++IF DEID++A RG D V+DR+++QLL E+DG+
Sbjct: 799 VGESEKAVRSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLH 858
Query: 649 ENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDL 708
+ GV VIAATNRPD +D ALLRPGRFDRL+ V P+E R I K+H R +P + D+ L
Sbjct: 859 QRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICL 918
Query: 709 KELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEAL 768
KELA T+GYTGADI+ +CREAA+ A+ +LE + +++M+ + A+
Sbjct: 919 KELASITKGYTGADISLICREAAIAALEESLE---------------MEEISMRHLKAAI 963
Query: 769 RKIGPSVSKETMEYYRKIQEQFKQ 792
+I P+ + Y+ + E+F++
Sbjct: 964 SQIEPT----EILSYKALSEKFQR 983
>pir||T50928 calmodulin-binding protein [imported] - Arabidopsis thaliana
>gi|6760428|gb|AAF28347.1| (AF217546) calmodulin-binding
protein [Arabidopsis thaliana]
>gi|6760430|gb|AAF28348.1| (AF217547) calmodulin-binding
protein [Arabidopsis thaliana]
Length = 1022
Score = 459 bits (1169), Expect = e-128
Identities = 255/623 (40%), Positives = 371/623 (58%), Gaps = 28/623 (4%)
Query: 178 GVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA 237
G +GGL +R++I+ L LG+ P KGVL++GPPGTGKT LA+ A
Sbjct: 381 GCEISKLGGLSKEYAILRDIIDSSSIKNSL-SGLGLRPTKGVLIHGPPGTGKTSLARTFA 439
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE 297
+ F ++NGPEI+S+Y GESE+ L EVF+ A PA +FID++DAIAP R E E
Sbjct: 440 RHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAAVFIDDLDAIAPARKEGGEE 499
Query: 298 VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKE 357
+ +R+VA LL LMDG+ V+VI ATNRPD+I+PALRRPGR DREIE+G P R +
Sbjct: 500 LSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGAPSSTQRSD 559
Query: 358 ILQIHTRGMPIE-PDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
IL + GM + + + + F + A + + ++ +
Sbjct: 560 ILHVILCGMRHSLSNIQVEQLAMATHGFVGADLSALCCEAAFVCLRRHLDQSYSSSNLPL 619
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGF-VGADLAALAREAAMAALRRLIREGKID----F 471
+ E + + D D + + A + R ++ L+ + +
Sbjct: 620 EEAPIAESSSSMSDISSDSSDSASSCITISATTSGAQRSFSLDETVSLVADDNQNNGNSC 679
Query: 472 EAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 531
+ + ++ L V DF A + PSA+REV++EVP V+W+D+GG +VK +L EA
Sbjct: 680 SEQMLRKQGEHTLSVGFEDFENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEA 739
Query: 532 VEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWV 591
VEWP K+ +AFK G PP GIL++GPPG KTL+A+AVA+E++ NF+AV+GPE+ SKWV
Sbjct: 740 VEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWV 799
Query: 592 GESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG--TDVNRVTDRIINQLLTEMDGIQE 649
GESEK +R +F KAR AP++IF DEID++A RG D V+DR+++QLL E+DG+ +
Sbjct: 800 GESEKAVRSLFAKARANAPSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQ 859
Query: 650 NAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLK 709
GV VIAATNRPD +D ALLRPGRFDRL+ V P+E R I K+H R +P + D+ LK
Sbjct: 860 RVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLK 919
Query: 710 ELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALR 769
ELA T+GYTGADI+ +CREAA+ A+ +LE + +++M+ + A+
Sbjct: 920 ELASITKGYTGADISLICREAAIAALEESLE---------------MEEISMRHLKAAIS 964
Query: 770 KIGPSVSKETMEYYRKIQEQFKQ 792
+I P+ + Y+ + E+F++
Sbjct: 965 QIEPT----EILSYKALSEKFQR 983
>gi|6322994 Yll034cp [Saccharomyces cerevisiae]
>gi|2492526|sp|Q07844|YL34_YEAST HYPOTHETICAL 93.1 KD
PROTEIN YLL034C >gi|2131732|pir||S64785 hypothetical
protein YLL034c - yeast (Saccharomyces cerevisiae)
>gi|1360222|emb|CAA97483.1| (Z73139) ORF YLL034c
[Saccharomyces cerevisiae]
Length = 837
Score = 455 bits (1159), Expect = e-127
Identities = 263/645 (40%), Positives = 393/645 (60%), Gaps = 41/645 (6%)
Query: 166 KPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPP 225
K K E R + + +GG+ DV+ ++ E+I LP+ HPE+F G+EPP+GVLL+GPP
Sbjct: 189 KRQKIKEDRSPPNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPP 248
Query: 226 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEID 285
G GKT +A A+A E FI+I+ P ++S GESE+++R++F EA AP ++F DEID
Sbjct: 249 GCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEID 308
Query: 286 AIAPKRSE-VTGEVEKRVVAQLLALMDGL---KSRGK-VIVIGATNRPDAIDPALRRPGR 340
AI PKR E+E+R+VAQLL MD L K+ GK VI+IGATNRPD++D ALRR GR
Sbjct: 309 AITPKRDGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGR 368
Query: 341 FDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEE 400
FDREI + VP+ R IL+ + + I+ + K+ F G K + +
Sbjct: 369 FDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFV--GADLKAL---VTA 423
Query: 401 VNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAAL 460
+ I Q I + + + +DE A+ + + A + ++ +
Sbjct: 424 AGTCAIKRIFQTYANIKSTPTTATDSSEDNMEIDETANGDESSL-KNTANMIDPLPLSVV 482
Query: 461 RRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGG 520
++ IR E + E L L + DF +AL ++P+A RE VP+V W ++G
Sbjct: 483 QQFIRN-----YPEPLSGEQLSLLSIKYEDFLKALPTIQPTAKREGFATVPDVTWANVGA 537
Query: 521 LEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIA 580
L+ V+ EL A+ P+K PE ++ GI+ P G+LL+GPPG GKTLLAKAVA ES+ANFI+
Sbjct: 538 LQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVANESRANFIS 597
Query: 581 VRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQL 640
++GPE+L+K+VGESE++IR++F +AR + P VIF DE+DA+ PRR T ++ + R++N L
Sbjct: 598 IKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSESSSRVVNTL 657
Query: 641 LTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTR-- 698
LTE+DG+ + G+ VI ATNRPD++DPA+LRPGR D+ + + P+ + + +I K T+
Sbjct: 658 LTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSH 717
Query: 699 GMPLADDVDLKELAR--RTEGYTGADIAAVCREAAMIAMRRA--------------LEKG 742
G PL+ DVD +E+ R + ++GAD+AA+ RE++++A++R L+K
Sbjct: 718 GTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQSEEIQSVLDNDLDKE 777
Query: 743 I--IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVS-KETMEYYR 784
+ G+ EI VTM DF ALRKI PSVS K+ ++Y R
Sbjct: 778 FEDLSVGVSGEEII----VTMSDFRSALRKIKPSVSDKDRLKYDR 818
Score = 193 bits (485), Expect = 7e-48
Identities = 105/264 (39%), Positives = 157/264 (58%), Gaps = 6/264 (2%)
Query: 482 DELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEA 541
+E+K +++ E V+ ++E PN +GG++DV +L E + P+ +PE
Sbjct: 172 EEVKKSKKRSKEGTCKVKRQKIKEDR-SPPNSSLKSLGGMDDVVAQLMELIGLPILHPEI 230
Query: 542 FKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREI 601
F + G+ PP+G+LL+GPPG GKT +A A+A E Q FI++ P ++S GESEK IR++
Sbjct: 231 FLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDL 290
Query: 602 FRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTD-RIINQLLTEMDGI----QENAGVVVI 656
F +AR AP ++F DEIDAI P+R R + RI+ QLLT MD + V++I
Sbjct: 291 FDEARSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDELTMEKTNGKPVIII 350
Query: 657 AATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTE 716
ATNRPD LD AL R GRFDR I + P+E +R I K + + + +D +LA+ T
Sbjct: 351 GATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTP 410
Query: 717 GYTGADIAAVCREAAMIAMRRALE 740
G+ GAD+ A+ A A++R +
Sbjct: 411 GFVGADLKALVTAAGTCAIKRIFQ 434
>pir||T39584 hypothetical protein SPBC16E9.10c - fission yeast
(Schizosaccharomyces pombe) >gi|2467272|emb|CAB16902.1|
(Z99759) AAA ATPase [Schizosaccharomyces pombe]
Length = 779
Score = 452 bits (1151), Expect = e-126
Identities = 266/679 (39%), Positives = 390/679 (57%), Gaps = 106/679 (15%)
Query: 162 NISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLL 221
N S++ E + + ++ DIGGL D I ++ E++ +P+KHPE+++ GI PP+GVLL
Sbjct: 154 NGSKRQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLL 213
Query: 222 YGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFI 281
+GPPG GKT+LA A+ANE FI+I+ P I+S GESE+++REVF+EA+ AP ++FI
Sbjct: 214 HGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFI 273
Query: 282 DEIDAIAPKRSEVTGEVEKRVVAQLLALMDGL---KSRGK-VIVIGATNRPDAIDPALRR 337
DEIDA+ PKR E+E+R+VAQ L MD L K+ GK V+VIGATN R
Sbjct: 274 DEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATN----------R 323
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKA 397
P D + R GR F ++ L + RE KI+
Sbjct: 324 PDSLDSALR-----RAGR----------------FDREICLTVPSQDARE----KILRTM 358
Query: 398 IEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAM 457
+ + S + + Q+ K+ T G+VGADL AL A +
Sbjct: 359 AKGLKLSGDFDFRQLAKQ------------------------TPGYVGADLKALTAAAGI 394
Query: 458 AALRRLIRE----GKIDFEAET-----------------------------------IPR 478
A++R+ E K+D ++ +
Sbjct: 395 IAIKRIFNEISPLNKLDLNSDPRFNELDSDMALDSNDSLPLDHSSIIQRYLNAHPDPLSP 454
Query: 479 EVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKY 538
E L+ L + +DF EAL V+PS+ RE VP V W++IG L+ ++ EL+ A+ P+K
Sbjct: 455 EELEPLAICPQDFIEALAKVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKR 514
Query: 539 PEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNI 598
PE +++ GI+ P G+LL+GPPG GKTLLAKAVA ES+ANFI++RGPE+L+K+VGESE+ +
Sbjct: 515 PELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAV 574
Query: 599 REIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAA 658
R++F +AR ++P VIF DE+DA+ PRR ++ + R++N LLTE+DG+ + +GV VIAA
Sbjct: 575 RQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAA 634
Query: 659 TNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELAR--RTE 716
TNRPDI+DPA+LRPGR D+ +LV PD R EI K T+ PL ++V+L L R R
Sbjct: 635 TNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCS 694
Query: 717 GYTGADIAAVCREAAMIAMRRALEKGII--KPGMKASEIRRLAKVTMKDFEEALRKIGPS 774
++GAD+AA+ REAA+ A+R A+ I +P + +VT DFE A + I PS
Sbjct: 695 NFSGADLAALVREAAVTALRSAVFADIASNEPEITQHSALEPIRVTNADFELAFKNIKPS 754
Query: 775 VSKETMEYYRKIQEQFKQA 793
VS + Y+++ +++ A
Sbjct: 755 VSDRDRQKYQRLAKRWSSA 773
>gb|AAB70457.1| (U68140) nuclear VCP-like protein NVLp.2 [Homo sapiens]
Length = 856
Score = 446 bits (1136), Expect = e-124
Identities = 270/664 (40%), Positives = 383/664 (57%), Gaps = 115/664 (17%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
+ V +ED+GG ++++ +M+ + ++HPE++ LG+ PP+GVLL+GPPG GKTLLA A+
Sbjct: 260 SNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAI 318
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
A E + + + PEI+S GESE++LRE+F++A NAP IIFIDEIDAI PKR +
Sbjct: 319 AGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASK 378
Query: 297 EVEKRVVAQLLALMDGLKS---RGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
++E+R+VAQLL MD L + +V+VIGATNRPD++DPALR
Sbjct: 379 DMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALR----------------- 421
Query: 354 GRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVL 413
R G+F + I I + ++ E I Q L
Sbjct: 422 --------------------------------RAGRFDREICLGIPD--EASRERILQTL 447
Query: 414 KKIDAELYDEVKTRLIDKL-LDELADVTHGFVGADLAALAREAAMAALRRLI----REGK 468
+ K RL LA +T GFVGADL AL REAAM A+ R++ + K
Sbjct: 448 CR---------KLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQK 498
Query: 469 IDFEAETIPR--------------EVLDELK---------------------VTRRDFYE 493
+ E E +P E DEL+ + DF
Sbjct: 499 KNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIV 558
Query: 494 ALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGI 553
AL V+PSA RE + VPNV W DIG LED+++EL A+ P++ P+ FKA G+ P G+
Sbjct: 559 ALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGV 618
Query: 554 LLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVI 613
LL GPPG GKTLLAKAVA ES NFI+V+GPE+L+ +VGESE+ +R++F++A+ +AP VI
Sbjct: 619 LLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 678
Query: 614 FIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPG 673
F DE+DA+ PRR + R++NQLLTEMDG++ V ++AATNRPDI+DPA+LRPG
Sbjct: 679 FFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPG 738
Query: 674 RFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELA--RRTEGYTGADIAAVCR 728
R D+ + V P R I K T+ PL DV+L+ +A R + YTGAD++A+ R
Sbjct: 739 RLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 798
Query: 729 EAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQE 788
EA++ A+R+ + + K G + E+ KV+ K FEEA +K+ S+SK+ Y ++QE
Sbjct: 799 EASICALRQEMARQ--KSGNEKGEL----KVSHKHFEEAFKKVRSSISKKDQIMYERLQE 852
Query: 789 QFKQ 792
+
Sbjct: 853 SLSR 856
Score = 199 bits (500), Expect = 1e-49
Identities = 119/280 (42%), Positives = 166/280 (58%), Gaps = 9/280 (3%)
Query: 465 REGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 524
R+GK+ + +E L E+ EA+ + A R + ++ NV ++D+GG +
Sbjct: 219 RKGKLKNKGSKRKKEDLQEVDGE----IEAVLQKKAKA-RGLEFQISNVKFEDVGGNDMT 273
Query: 525 KQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGP 584
+E+ + + +++PE + G+ PP+G+LL+GPPG GKTLLA A+A E + V P
Sbjct: 274 LKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAP 332
Query: 585 EILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEM 644
EI+S GESE+ +RE+F +A AP +IFIDEIDAI P+R + RI+ QLLT M
Sbjct: 333 EIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCM 392
Query: 645 D---GIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMP 701
D + A V+VI ATNRPD LDPAL R GRFDR I + PDE +R I + R +
Sbjct: 393 DDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLR 452
Query: 702 LADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
L D LA T G+ GAD+ A+CREAAM A+ R L K
Sbjct: 453 LPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMK 492
Score = 196 bits (494), Expect = 6e-49
Identities = 100/212 (47%), Positives = 141/212 (66%), Gaps = 4/212 (1%)
Query: 157 EFTDFNISEKPVKEVEKR----MTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLG 212
E DF ++ V+ KR VT+ DIG L+D+ E++ I P+++P+ F+ LG
Sbjct: 552 ELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG 611
Query: 213 IEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAE 272
+ P GVLL GPPG GKTLLAKAVANE+ FI++ GPE+++ Y GESE +R+VF+ A+
Sbjct: 612 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 671
Query: 273 ENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAID 332
+AP +IF DE+DA+ P+RS+ RVV QLL MDGL++R +V ++ ATNRPD ID
Sbjct: 672 NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 731
Query: 333 PALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
PA+ RPGR D+ + VG+P R IL+ T+
Sbjct: 732 PAILRPGRLDKTLFVGLPPPADRLAILKTITK 763
>gi|4505483 nuclear VCP-like; Nuclear valosin-containing protein-like [Homo
sapiens] >gi|11448052|ref|XP_001975.1| nuclear VCP-like
[Homo sapiens] >gi|2406580|gb|AAB70460.1| (U78772)
nuclear VCP-like protein NVLp.1 [Homo sapiens]
Length = 750
Score = 446 bits (1136), Expect = e-124
Identities = 270/664 (40%), Positives = 383/664 (57%), Gaps = 115/664 (17%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
+ V +ED+GG ++++ +M+ + ++HPE++ LG+ PP+GVLL+GPPG GKTLLA A+
Sbjct: 154 SNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAI 212
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
A E + + + PEI+S GESE++LRE+F++A NAP IIFIDEIDAI PKR +
Sbjct: 213 AGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASK 272
Query: 297 EVEKRVVAQLLALMDGLKS---RGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
++E+R+VAQLL MD L + +V+VIGATNRPD++DPALR
Sbjct: 273 DMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALR----------------- 315
Query: 354 GRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVL 413
R G+F + I I + ++ E I Q L
Sbjct: 316 --------------------------------RAGRFDREICLGIPD--EASRERILQTL 341
Query: 414 KKIDAELYDEVKTRLIDKL-LDELADVTHGFVGADLAALAREAAMAALRRLI----REGK 468
+ K RL LA +T GFVGADL AL REAAM A+ R++ + K
Sbjct: 342 CR---------KLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQEQQK 392
Query: 469 IDFEAETIPR--------------EVLDELK---------------------VTRRDFYE 493
+ E E +P E DEL+ + DF
Sbjct: 393 KNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIV 452
Query: 494 ALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGI 553
AL V+PSA RE + VPNV W DIG LED+++EL A+ P++ P+ FKA G+ P G+
Sbjct: 453 ALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGV 512
Query: 554 LLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVI 613
LL GPPG GKTLLAKAVA ES NFI+V+GPE+L+ +VGESE+ +R++F++A+ +AP VI
Sbjct: 513 LLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 572
Query: 614 FIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPG 673
F DE+DA+ PRR + R++NQLLTEMDG++ V ++AATNRPDI+DPA+LRPG
Sbjct: 573 FFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPG 632
Query: 674 RFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELA--RRTEGYTGADIAAVCR 728
R D+ + V P R I K T+ PL DV+L+ +A R + YTGAD++A+ R
Sbjct: 633 RLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 692
Query: 729 EAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQE 788
EA++ A+R+ + + K G + E+ KV+ K FEEA +K+ S+SK+ Y ++QE
Sbjct: 693 EASICALRQEMARQ--KSGNEKGEL----KVSHKHFEEAFKKVRSSISKKDQIMYERLQE 746
Query: 789 QFKQ 792
+
Sbjct: 747 SLSR 750
Score = 199 bits (500), Expect = 1e-49
Identities = 119/280 (42%), Positives = 166/280 (58%), Gaps = 9/280 (3%)
Query: 465 REGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 524
R+GK+ + +E L E+ EA+ + A R + ++ NV ++D+GG +
Sbjct: 113 RKGKLKNKGSKRKKEDLQEVDGE----IEAVLQKKAKA-RGLEFQISNVKFEDVGGNDMT 167
Query: 525 KQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGP 584
+E+ + + +++PE + G+ PP+G+LL+GPPG GKTLLA A+A E + V P
Sbjct: 168 LKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAP 226
Query: 585 EILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEM 644
EI+S GESE+ +RE+F +A AP +IFIDEIDAI P+R + RI+ QLLT M
Sbjct: 227 EIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCM 286
Query: 645 D---GIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMP 701
D + A V+VI ATNRPD LDPAL R GRFDR I + PDE +R I + R +
Sbjct: 287 DDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLR 346
Query: 702 LADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
L D LA T G+ GAD+ A+CREAAM A+ R L K
Sbjct: 347 LPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMK 386
Score = 196 bits (494), Expect = 6e-49
Identities = 100/212 (47%), Positives = 141/212 (66%), Gaps = 4/212 (1%)
Query: 157 EFTDFNISEKPVKEVEKR----MTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLG 212
E DF ++ V+ KR VT+ DIG L+D+ E++ I P+++P+ F+ LG
Sbjct: 446 ELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG 505
Query: 213 IEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAE 272
+ P GVLL GPPG GKTLLAKAVANE+ FI++ GPE+++ Y GESE +R+VF+ A+
Sbjct: 506 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 565
Query: 273 ENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAID 332
+AP +IF DE+DA+ P+RS+ RVV QLL MDGL++R +V ++ ATNRPD ID
Sbjct: 566 NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 625
Query: 333 PALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
PA+ RPGR D+ + VG+P R IL+ T+
Sbjct: 626 PAILRPGRLDKTLFVGLPPPADRLAILKTITK 657
>gb|AAF01545.1|AC009325_15 (AC009325) putative cell division control protein [Arabidopsis
thaliana]
Length = 703
Score = 440 bits (1119), Expect = e-122
Identities = 250/649 (38%), Positives = 366/649 (55%), Gaps = 87/649 (13%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
++E T G T++D GG+K +++++ + P+ +PE F+K+G++PP G+L +GPPG GK
Sbjct: 104 DLEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGK 163
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
T LA A+ANEA F I+ E++S G SEE +RE+F +A AP+I+FIDEIDAI
Sbjct: 164 TKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGS 223
Query: 290 KRSEVTGEVEKRVVAQLLALMDGLKSRGK----------VIVIGATNRPDAIDPALRRPG 339
KR E+EKR+V QLL MDG ++G V+VIGATNRPDA+DPALRR G
Sbjct: 224 KRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSG 283
Query: 340 RFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIE 399
RF+ EI + PD R EIL + + + + EG F K
Sbjct: 284 RFETEIALTAPDEDARAEILSV------------------VAQKLRLEGPFDK------- 318
Query: 400 EVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAA 459
+A +T GFVGADL ++A A A
Sbjct: 319 ----------------------------------KRIARLTPGFVGADLESVAYLAGRKA 344
Query: 460 LRRLIREGKIDFEAE----------TIPREVLDELKVTRRDFYEALKMVEPSALREVLIE 509
++R++ K + + P E L++L V DF EA+ +V+ S RE
Sbjct: 345 IKRILDSRKSEQSGDGEDDKSWLRMPWPEEELEKLFVKMSDFEEAVNLVQASLTREGFSI 404
Query: 510 VPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKA 569
VP+V WDD+GGL+ ++ + + P+K P+ +KA+G+ G LLYGPPG GKTL+AKA
Sbjct: 405 VPDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKA 464
Query: 570 VATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV 629
A E+ ANF+ ++G E+L+K+VGESE IR +F++AR AP VIF DE+DA+ RG +
Sbjct: 465 AANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEG 524
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
V +R++NQ L E+DG E V VI ATNRPD++DPA LRPGRF L+ VP P+ R
Sbjct: 525 AWVVERLLNQFLVELDG-GERRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADER 583
Query: 690 FEIFKVHTRGMPLADDVDLKELARRT-EGYTGADIAAVCREAAMIAMRRALEKGIIKPGM 748
I K R P+ VDL +A+ EG++GAD+A + ++A +A+E+ I
Sbjct: 584 ASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATF----QAVEEMIGSSES 639
Query: 749 KASEIRRLAKVTMK--DFEEALRKIGPSVSKETMEYYRKIQEQFKQARG 795
++ + + T+K FE+AL + PSV+K+ +Y + + +++ G
Sbjct: 640 SEDDVTDITQCTIKTRHFEQALSLVSPSVNKQQRRHYDALSTKLQESVG 688
>gb|AAD20084.1| (AC006836) putative AAA-type ATPase [Arabidopsis thaliana]
Length = 603
Score = 413 bits (1049), Expect = e-114
Identities = 236/622 (37%), Positives = 358/622 (56%), Gaps = 103/622 (16%)
Query: 183 DIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANA 242
+IGG + ++ +RE+I P ++P LG++ P+G+LLYGPPGTGKT L +AV E +A
Sbjct: 23 EIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDA 82
Query: 243 YFIAINGPEIMSKYYGESEERLREVFKEAEENA----PAIIFIDEIDAIAPKRSEVTGEV 298
+ I ++ + + GESE+ LRE F EA +A P++IFIDEID + P+R + E
Sbjct: 83 HLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRR-DARREQ 141
Query: 299 EKRVVAQLLALMDGLK---SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ R+ +QL LMD K S +V+V+ +TNR DAIDPALRR GRFD +EV P+
Sbjct: 142 DVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPN---- 197
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKK 415
++D LKIL+ + ++ +D
Sbjct: 198 ------------------EEDRLKILQLYTKKVNLDPSVD-------------------- 219
Query: 416 IDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAET 475
L +A +G+VGADL AL REA ++A +R
Sbjct: 220 -----------------LQAIAISCNGYVGADLEALCREATISASKRSS----------- 251
Query: 476 IPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWP 535
D L +T +DF A +V PS R + +E+P V WDD+GGL+D+K++L++AVEWP
Sbjct: 252 ------DSLILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWP 305
Query: 536 LKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESE 595
+K+ AF GI+P +GILL+GPPG KT LAKA A +QA+F ++ E+ S +VGE E
Sbjct: 306 IKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGE 365
Query: 596 KNIREIFRKARQAAPTVIFIDEIDAIAPRRG----TDVNRVTDRIINQLLTEMDGIQENA 651
+R F++AR A+P++IF DE D +A +RG ++ + V +R+++ LLTEMDG++E
Sbjct: 366 ALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAK 425
Query: 652 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKEL 711
G++V+AATNRP +D AL+RPGRFD ++ VP PD +ARFEI +VHTR M L DDVDL+++
Sbjct: 426 GILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKI 485
Query: 712 ARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
A T+ +TGA++ +CRE+ +++R + V + F+ A +
Sbjct: 486 AEETDLFTGAELEGLCRESGTVSLRENI---------------AATAVFNRHFQTAKSSL 530
Query: 772 GPSVSKETMEYYRKIQEQFKQA 793
P+++ E +E Y ++ K++
Sbjct: 531 KPALTIEEVETYSSFRKAAKRS 552
Score = 189 bits (475), Expect = 1e-46
Identities = 108/248 (43%), Positives = 151/248 (60%), Gaps = 11/248 (4%)
Query: 144 VTATQPSGVVQITEFTDFNISEKPVKEVEKRMTT----GVTYEDIGGLKDVIEKIREMIE 199
++A++ S I DF I++ V R T VT++D+GGLKD+ +K+++ +E
Sbjct: 244 ISASKRSSDSLILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVE 303
Query: 200 LPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGE 259
P+KH F K+GI P +G+LL+GPPG KT LAKA AN A A F +++ E+ S Y GE
Sbjct: 304 WPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGE 363
Query: 260 SEERLREVFKEAEENAPAIIFIDEIDAIAPKR----SEVTGEVEKRVVAQLLALMDGLKS 315
E LR F+ A +P+IIF DE D +A KR S + V +R+++ LL MDGL+
Sbjct: 364 GEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEE 423
Query: 316 RGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKD 375
++V+ ATNRP AID AL RPGRFD + V PD + R EILQ+HTR M + D
Sbjct: 424 AKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDV--- 480
Query: 376 DVLKILED 383
D+ KI E+
Sbjct: 481 DLRKIAEE 488
>dbj|BAA85441.1| (AP000616) EST D15969(C1695) corresponds to a region of the
predicted gene.; similar to valosin-containing protein
(U20213) [Oryza sativa]
Length = 781
Score = 401 bits (1020), Expect = e-110
Identities = 248/649 (38%), Positives = 342/649 (52%), Gaps = 122/649 (18%)
Query: 167 PVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPG 226
P E R G T+ D+GG++ VIE++ + +PL HPE+ LG++P G+LL+GPPG
Sbjct: 176 PPSEGGDRGGKGPTFSDLGGMESVIEQLMMEVVVPLCHPEVPRWLGVKPVAGLLLHGPPG 235
Query: 227 TGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDA 286
GKT LA A+ANE F I+ PE++S G SEE +R +FK+A AP+I+FIDEIDA
Sbjct: 236 CGKTTLAHAIANETGVPFYKISAPEVVSGVSGASEENIRSLFKKAYRTAPSIVFIDEIDA 295
Query: 287 IAPKRSEVTGEVEKRVVAQLLALMDGL-----------------KSRGKVIVIGATNRPD 329
IA KR + E+E+R+V QL+ MD K G VIVIGATNRPD
Sbjct: 296 IASKRENLQREMERRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVIVIGATNRPD 355
Query: 330 AIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGK 389
A+D ALRRPGRFDREI +GVPD RK ++ + + + EG+
Sbjct: 356 AVDQALRRPGRFDREISLGVPDEYA------------------RKKILMMLTRNLRLEGQ 397
Query: 390 FTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLA 449
+ ++A T FVGADL
Sbjct: 398 LDLL-----------------------------------------KIARATSSFVGADLK 416
Query: 450 ALAREAAMAALRRLI------------REGKIDFEAETIPREVLDELKVTRRDFYEALKM 497
AL +A A++R+I K D+ + ++ L +T DF EA KM
Sbjct: 417 ALVDKAGNLAMKRIIDRRRAQFCQEHDENSKHDWWRQPWDANEIEGLSITMDDFEEATKM 476
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
V+PS RE +P+V WDD+GGL+ +++E + +K PE +K +G+ G LL+G
Sbjct: 477 VQPSLRREGFSSIPDVTWDDVGGLDSLRKEFDRYIIRCIKQPEEYKTFGLNMQAGFLLFG 536
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPG GKTL+AKAVA E+ ANFI ++GPE+L+K+VGESE +R+IF +A+ P ++F DE
Sbjct: 537 PPGCGKTLIAKAVAHEAGANFIHIKGPELLNKYVGESESEVRKIFIRAQTNTPCILFFDE 596
Query: 618 IDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDR 677
LL E+DG E GV VI ATNR D++D A LRPGRF +
Sbjct: 597 ----------------------LLIELDGAGERKGVFVIGATNRIDVIDDAALRPGRFGK 634
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTE--GYTGADIAAV------CRE 729
VP P R I + R P++ VDL LARR E TGAD+A++ E
Sbjct: 635 KHYVPLPGADERVSILRALARNKPISSSVDLGALARREECKNLTGADLASMEPMGHFVNE 694
Query: 730 AAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKE 778
AAM A+ LE ++ G S + + + + FE AL K+ PSVS++
Sbjct: 695 AAMAALEERLE--FLENG--ESSMSSSSAIELPHFERALAKMQPSVSEQ 739
>pir||T46437 hypothetical protein DKFZp434K0126.1 - human (fragment)
>gi|6807907|emb|CAB70717.1| (AL137377) hypothetical
protein [Homo sapiens]
Length = 431
Score = 373 bits (948), Expect = e-102
Identities = 189/374 (50%), Positives = 257/374 (68%), Gaps = 13/374 (3%)
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFY 492
L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV++ L VT DF
Sbjct: 21 LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEVMNSLAVTMDDFR 78
Query: 493 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKG 552
AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+ F +G+TP KG
Sbjct: 79 WALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 138
Query: 553 ILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTV 612
+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+REIF KARQAAP V
Sbjct: 139 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 198
Query: 613 IFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPAL 669
+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+
Sbjct: 199 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 258
Query: 670 LRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCRE 729
LRPGR D+LI +P PDEK+R I K + R P+A DVDL+ LA+ T G++GAD+ +C+
Sbjct: 259 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 318
Query: 730 AAMIAMRRALEKGIIK--------PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETME 781
A +A+R ++E I + M+ E + ++ FEEA+R SVS +
Sbjct: 319 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIR 378
Query: 782 YYRKIQEQFKQARG 795
Y + +Q+RG
Sbjct: 379 KYEMFAQTLQQSRG 392
Score = 210 bits (530), Expect = 4e-53
Identities = 106/235 (45%), Positives = 156/235 (66%), Gaps = 5/235 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT+EDIGGL+DV +++E+++ P++HP+ F K G+ P KGVL YGPPG GKTLLAKA+AN
Sbjct: 99 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 158
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE- 297
E A FI+I GPE+++ ++GESE +RE+F +A + AP ++F DE+D+IA R G+
Sbjct: 159 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 218
Query: 298 --VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
RV+ Q+L MDG+ ++ V +IGATNRPD IDPA+ RPGR D+ I + +PD + R
Sbjct: 219 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 278
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIE-EVNKSKEEEI 409
IL+ + R P+ D + + K+ F T+I +A + + +S E EI
Sbjct: 279 VAILKANLRKSPVAKDVDLEFLAKMTNGFS-GADLTEICQRACKLAIRESIESEI 332
Score = 79.6 bits (193), Expect = 1e-13
Identities = 39/92 (42%), Positives = 60/92 (64%)
Query: 689 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGM 748
R EI ++HT+ M LADDVDL+++A T G+ GAD+AA+C EAA+ A+R+ ++ ++
Sbjct: 2 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 61
Query: 749 KASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
+E+ VTM DF AL + PS +ET+
Sbjct: 62 IDAEVMNSLAVTMDDFRWALSQSNPSALRETV 93
>emb|CAB60418.1| (AL117203) contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=524.3, E-value=2.9e-154, N=2~cDNA EST yk185f2.3
comes from this gene~cDNA EST yk185f2.5 comes from this
gene~cDNA EST yk269c8.3 co>
Length = 757
Score = 371 bits (942), Expect = e-101
Identities = 246/679 (36%), Positives = 367/679 (53%), Gaps = 137/679 (20%)
Query: 179 VTYEDIGGL-KDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA 237
V +E IGG + +E R + + LK P+ F LG++PP+G +++GPPG GKT+ A+AVA
Sbjct: 147 VKFEHIGGADRQFLEVCR--LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 204
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE 297
E + + E++S GE+EE++R +F A++N+P I+ +D+IDAIAP+R E
Sbjct: 205 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 264
Query: 298 VEKRVVAQLLALMDGL-----------------------------KSRGKVIVIGATNRP 328
+E+RVV+QL + +D L + V+VIG T+RP
Sbjct: 265 MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRP 324
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREG 388
DA+D LRR GR F + L I ++ RE
Sbjct: 325 DAVDGGLRRAGR-------------------------------FENEISLGIPDETARE- 352
Query: 389 KFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADL 448
KI++K I +VN + D L ++A +T G+VGADL
Sbjct: 353 ---KILEK-ICKVNLAG------------------------DVTLKQIAKLTPGYVGADL 384
Query: 449 AALAREAAMAALRRLI------REGKIDFEAETIPREV---------------LDEL--- 484
AL REAA A+ R+ EG + E I E+ L EL
Sbjct: 385 QALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNGG 444
Query: 485 -KVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFK 543
+++ DF AL ++P+A RE VP+V WDDIG L +V+++L ++ +P+K + F
Sbjct: 445 LQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFA 504
Query: 544 AYGIT-PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
A GI P+GILL GPPG GKTLLAKAVA E+ NFI+V+GPE+L+ +VGESE+ +R +F
Sbjct: 505 ALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFISVKGPELLNMYVGESERAVRTVF 564
Query: 603 RKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRP 662
++AR + P VIF DEIDA+ P+R + R++NQLLTEMDG++ V +I ATNRP
Sbjct: 565 QRARDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRP 624
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTE--G 717
DI+D A+LRPGR D+++ V P + R +I + T+ L +D+D E+A+ E G
Sbjct: 625 DIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELAG 684
Query: 718 YTGADIAAVCREAAMIAMR-RALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVS 776
+TGAD+AA+ E++++A++ R LE G V M+ F EA +I PSV+
Sbjct: 685 FTGADLAALIHESSLLALQARVLENDESVKG-----------VGMRHFREAASRIRPSVT 733
Query: 777 KETMEYYRKIQEQF--KQA 793
+ + Y +++ + KQA
Sbjct: 734 EADRKKYEHMKKIYGLKQA 752
Score = 183 bits (461), Expect = 5e-45
Identities = 171/537 (31%), Positives = 241/537 (44%), Gaps = 118/537 (21%)
Query: 16 QRDVGRGIVRLDRKTMRELGISP-----------GD--VVEIIGTKNTAA------IAWP 56
QR++ R +V ++ EL + P GD V IIG TAA I
Sbjct: 262 QREMERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTT 321
Query: 57 AYPEDEGLGIIRMDGTIRKNAGVGLGDEVTVRK-----AEVREAKKVTL---APTEPIRF 108
+ P D G +R G +G+ DE K +V A VTL A P
Sbjct: 322 SRP-DAVDGGLRRAGRFENEISLGIPDETAREKILEKICKVNLAGDVTLKQIAKLTPGYV 380
Query: 109 GRDFVEWLHE-------RLVGRPVVRGDYIK---VGVLGQELTFVVTATQ----PSGVVQ 154
G D + E R+ VV+ + K V + +EL V+ Q PS + +
Sbjct: 381 GADLQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSE 440
Query: 155 IT-----EFTDFNISEKPVKEVEKR----MTTGVTYEDIGGLKDVIEKIREMIELPLKHP 205
+ F DF + ++ KR V+++DIG L +V +++ I P+K
Sbjct: 441 LNGGLQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRA 500
Query: 206 ELFEKLGIE-PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERL 264
+ F LGI+ P+G+LL GPPG GKTLLAKAVANE FI++ GPE+++ Y GESE +
Sbjct: 501 DDFAALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFISVKGPELLNMYVGESERAV 560
Query: 265 REVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
R VF+ A ++ P +IF DEIDA+ PKRS R+V QLL MDG++ R KV +IGA
Sbjct: 561 RTVFQRARDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFLIGA 620
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
TNRPD +D A+ RPGR D+ + V P + R +IL+
Sbjct: 621 TNRPDIVDAAILRPGRLDKILFVDFPSVEDRVDILR------------------------ 656
Query: 385 KREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFV 444
+K P + + ID + E+ L ELA GF
Sbjct: 657 -----------------KSTKNGTRPMLGEDID---FHEIAQ------LPELA----GFT 686
Query: 445 GADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPS 501
GADLAAL E+++ AL+ + E + V R F EA + PS
Sbjct: 687 GADLAALIHESSLLALQARVLENDESVKG------------VGMRHFREAASRIRPS 731
Score = 161 bits (404), Expect = 2e-38
Identities = 105/323 (32%), Positives = 165/323 (50%), Gaps = 58/323 (17%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
+V ++ IGG + E+ + LK P+ F G+ PP+G +++GPPG GKT+ A+AVA
Sbjct: 146 HVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 204
Query: 572 TESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNR 631
E + + E++S GE+E+ IR +F A+Q +P ++ +D+IDAIAPRR T
Sbjct: 205 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 264
Query: 632 VTDRIINQLLTEMDGI-----------------------------QENAGVVVIAATNRP 662
+ R+++QL + +D + AGV+VI T+RP
Sbjct: 265 MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRP 324
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 722
D +D L R GRF+ I + PDE AR +I + + + LA DV LK++A+ T GY GAD
Sbjct: 325 DAVDGGLRRAGRFENEISLGIPDETAREKILEKICK-VNLAGDVTLKQIAKLTPGYVGAD 383
Query: 723 IAAVCREAAMIAMRRALEKGIIK-PGMK--------------------------ASEIRR 755
+ A+ REAA +A+ R + ++K G K SE+
Sbjct: 384 LQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNG 443
Query: 756 LAKVTMKDFEEALRKIGPSVSKE 778
+++ +DFE AL I P+ +E
Sbjct: 444 GLQISFEDFERALSTIQPAAKRE 466
>pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans
Length = 856
Score = 371 bits (942), Expect = e-101
Identities = 246/679 (36%), Positives = 367/679 (53%), Gaps = 137/679 (20%)
Query: 179 VTYEDIGGL-KDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA 237
V +E IGG + +E R + + LK P+ F LG++PP+G +++GPPG GKT+ A+AVA
Sbjct: 246 VKFEHIGGADRQFLEVCR--LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 303
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE 297
E + + E++S GE+EE++R +F A++N+P I+ +D+IDAIAP+R E
Sbjct: 304 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 363
Query: 298 VEKRVVAQLLALMDGL-----------------------------KSRGKVIVIGATNRP 328
+E+RVV+QL + +D L + V+VIG T+RP
Sbjct: 364 MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRP 423
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREG 388
DA+D LRR GR F + L I ++ RE
Sbjct: 424 DAVDGGLRRAGR-------------------------------FENEISLGIPDETARE- 451
Query: 389 KFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADL 448
KI++K I +VN + D L ++A +T G+VGADL
Sbjct: 452 ---KILEK-ICKVNLAG------------------------DVTLKQIAKLTPGYVGADL 483
Query: 449 AALAREAAMAALRRLI------REGKIDFEAETIPREV---------------LDEL--- 484
AL REAA A+ R+ EG + E I E+ L EL
Sbjct: 484 QALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNGG 543
Query: 485 -KVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFK 543
+++ DF AL ++P+A RE VP+V WDDIG L +V+++L ++ +P+K + F
Sbjct: 544 LQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFA 603
Query: 544 AYGIT-PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
A GI P+GILL GPPG GKTLLAKAVA E+ NFI+V+GPE+L+ +VGESE+ +R +F
Sbjct: 604 ALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFISVKGPELLNMYVGESERAVRTVF 663
Query: 603 RKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRP 662
++AR + P VIF DEIDA+ P+R + R++NQLLTEMDG++ V +I ATNRP
Sbjct: 664 QRARDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRP 723
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTE--G 717
DI+D A+LRPGR D+++ V P + R +I + T+ L +D+D E+A+ E G
Sbjct: 724 DIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELAG 783
Query: 718 YTGADIAAVCREAAMIAMR-RALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVS 776
+TGAD+AA+ E++++A++ R LE G V M+ F EA +I PSV+
Sbjct: 784 FTGADLAALIHESSLLALQARVLENDESVKG-----------VGMRHFREAASRIRPSVT 832
Query: 777 KETMEYYRKIQEQF--KQA 793
+ + Y +++ + KQA
Sbjct: 833 EADRKKYEHMKKIYGLKQA 851
Score = 183 bits (461), Expect = 5e-45
Identities = 171/537 (31%), Positives = 241/537 (44%), Gaps = 118/537 (21%)
Query: 16 QRDVGRGIVRLDRKTMRELGISP-----------GD--VVEIIGTKNTAA------IAWP 56
QR++ R +V ++ EL + P GD V IIG TAA I
Sbjct: 361 QREMERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTT 420
Query: 57 AYPEDEGLGIIRMDGTIRKNAGVGLGDEVTVRK-----AEVREAKKVTL---APTEPIRF 108
+ P D G +R G +G+ DE K +V A VTL A P
Sbjct: 421 SRP-DAVDGGLRRAGRFENEISLGIPDETAREKILEKICKVNLAGDVTLKQIAKLTPGYV 479
Query: 109 GRDFVEWLHE-------RLVGRPVVRGDYIK---VGVLGQELTFVVTATQ----PSGVVQ 154
G D + E R+ VV+ + K V + +EL V+ Q PS + +
Sbjct: 480 GADLQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSE 539
Query: 155 IT-----EFTDFNISEKPVKEVEKR----MTTGVTYEDIGGLKDVIEKIREMIELPLKHP 205
+ F DF + ++ KR V+++DIG L +V +++ I P+K
Sbjct: 540 LNGGLQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRA 599
Query: 206 ELFEKLGIE-PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERL 264
+ F LGI+ P+G+LL GPPG GKTLLAKAVANE FI++ GPE+++ Y GESE +
Sbjct: 600 DDFAALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFISVKGPELLNMYVGESERAV 659
Query: 265 REVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
R VF+ A ++ P +IF DEIDA+ PKRS R+V QLL MDG++ R KV +IGA
Sbjct: 660 RTVFQRARDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFLIGA 719
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
TNRPD +D A+ RPGR D+ + V P + R +IL+
Sbjct: 720 TNRPDIVDAAILRPGRLDKILFVDFPSVEDRVDILR------------------------ 755
Query: 385 KREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFV 444
+K P + + ID + E+ L ELA GF
Sbjct: 756 -----------------KSTKNGTRPMLGEDID---FHEIAQ------LPELA----GFT 785
Query: 445 GADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPS 501
GADLAAL E+++ AL+ + E + V R F EA + PS
Sbjct: 786 GADLAALIHESSLLALQARVLENDESVKG------------VGMRHFREAASRIRPS 830
Score = 161 bits (404), Expect = 2e-38
Identities = 105/323 (32%), Positives = 165/323 (50%), Gaps = 58/323 (17%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
+V ++ IGG + E+ + LK P+ F G+ PP+G +++GPPG GKT+ A+AVA
Sbjct: 245 HVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 303
Query: 572 TESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNR 631
E + + E++S GE+E+ IR +F A+Q +P ++ +D+IDAIAPRR T
Sbjct: 304 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 363
Query: 632 VTDRIINQLLTEMDGI-----------------------------QENAGVVVIAATNRP 662
+ R+++QL + +D + AGV+VI T+RP
Sbjct: 364 MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRP 423
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 722
D +D L R GRF+ I + PDE AR +I + + + LA DV LK++A+ T GY GAD
Sbjct: 424 DAVDGGLRRAGRFENEISLGIPDETAREKILEKICK-VNLAGDVTLKQIAKLTPGYVGAD 482
Query: 723 IAAVCREAAMIAMRRALEKGIIK-PGMK--------------------------ASEIRR 755
+ A+ REAA +A+ R + ++K G K SE+
Sbjct: 483 LQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNG 542
Query: 756 LAKVTMKDFEEALRKIGPSVSKE 778
+++ +DFE AL I P+ +E
Sbjct: 543 GLQISFEDFERALSTIQPAAKRE 565
>gb|AAF05624.1| (AF059715) cell survival CED-4-interacting protein MAC-1
[Caenorhabditis elegans]
Length = 813
Score = 366 bits (930), Expect = e-100
Identities = 244/679 (35%), Positives = 364/679 (52%), Gaps = 137/679 (20%)
Query: 179 VTYEDIGGL-KDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA 237
V +E IGG + +E R + + LK P+ F LG++PP+G +++GPPG GKT+ A+AVA
Sbjct: 203 VKFEHIGGADRQFLEVCR--LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 260
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE 297
E + + E++S GE+EE++R +F A++N+P I+ +D+IDAIAP+R E
Sbjct: 261 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 320
Query: 298 VEKRVVAQLLALMDGL-----------------------------KSRGKVIVIGATNRP 328
+E+RVV+QL + +D L + V+VIG T+RP
Sbjct: 321 MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRP 380
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREG 388
DA+D LRR GR F+ + L I ++ RE
Sbjct: 381 DAVDGRLRRTGR-------------------------------FQNEISLGIPDETARE- 408
Query: 389 KFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADL 448
KI++K I +VN + D L ++A +T G+VGADL
Sbjct: 409 ---KILEK-ICKVNLAG------------------------DVTLKQIAKLTPGYVGADL 440
Query: 449 AALAREAAMAALRRLI------REGKIDFEAETIPREV---------------LDEL--- 484
AL REAA A+ R+ EG + E I E+ L EL
Sbjct: 441 QALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNGG 500
Query: 485 -KVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFK 543
+++ DF AL ++P+A RE VP+V WDDIG L +V+++L ++ +P+K + F
Sbjct: 501 LQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFA 560
Query: 544 AYGIT-PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
A GI P+GILL GPPG GKTLLAKAVA E+ NF +V+GPE+L+ +VGESE+ +R +F
Sbjct: 561 ALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFFSVKGPELLNMYVGESERAVRTVF 620
Query: 603 RKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRP 662
++AR + P VIF DEIDA+ P+R + R++NQLLTEMDG++ V +I ATNRP
Sbjct: 621 QRARDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFLIGATNRP 680
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKELARRTE--G 717
DI+D A+LRPGR D+++ V P + R +I + T+ L +D+D E+A+ E G
Sbjct: 681 DIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTKNGTRPMLGEDIDFHEIAQLPELAG 740
Query: 718 YTGADIAAVCREAAMIAMR-RALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVS 776
+TGAD+A E +++A++ R LE G V M+ F EA +I PSV+
Sbjct: 741 FTGADLAVFIHELSLLALQARVLENDESVKG-----------VGMRHFREAASRIRPSVT 789
Query: 777 KETMEYYRKIQEQF--KQA 793
+ + Y +++ + KQA
Sbjct: 790 EADRKKYEHMKKIYGLKQA 808
Score = 182 bits (457), Expect = 1e-44
Identities = 142/400 (35%), Positives = 202/400 (50%), Gaps = 52/400 (13%)
Query: 16 QRDVGRGIVRLDRKTMRELGISP-----------GD--VVEIIGTKNTAA------IAWP 56
QR++ R +V ++ EL + P GD V IIG TAA I
Sbjct: 318 QREMERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTT 377
Query: 57 AYPEDEGLGIIRMDGTIRKNAGVGLGDEVTVRK-----AEVREAKKVTL---APTEPIRF 108
+ P D G +R G + +G+ DE K +V A VTL A P
Sbjct: 378 SRP-DAVDGRLRRTGRFQNEISLGIPDETAREKILEKICKVNLAGDVTLKQIAKLTPGYV 436
Query: 109 GRDFVEWLHE-------RLVGRPVVRGDYIK---VGVLGQELTFVVTATQ----PSGVVQ 154
G D + E R+ VV+ + K V + +EL V+ Q PS + +
Sbjct: 437 GADLQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSE 496
Query: 155 IT-----EFTDFNISEKPVKEVEKR----MTTGVTYEDIGGLKDVIEKIREMIELPLKHP 205
+ F DF + ++ KR V+++DIG L +V +++ I P+K
Sbjct: 497 LNGGLQISFEDFERALSTIQPAAKREGFATVPDVSWDDIGALVEVRKQLEWSILYPIKRA 556
Query: 206 ELFEKLGIE-PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERL 264
+ F LGI+ P+G+LL GPPG GKTLLAKAVANE F ++ GPE+++ Y GESE +
Sbjct: 557 DDFAALGIDCRPQGILLCGPPGCGKTLLAKAVANETGMNFFSVKGPELLNMYVGESERAV 616
Query: 265 REVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
R VF+ A ++ P +IF DEIDA+ PKRS R+V QLL MDG++ R KV +IGA
Sbjct: 617 RTVFQRARDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLLTEMDGVEGRQKVFLIGA 676
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
TNRPD +D A+ RPGR D+ + V P + R +IL+ T+
Sbjct: 677 TNRPDIVDAAILRPGRLDKILFVDFPSVEDRVDILRKSTK 716
Score = 160 bits (401), Expect = 5e-38
Identities = 105/323 (32%), Positives = 164/323 (50%), Gaps = 58/323 (17%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
+V ++ IGG + E+ + LK P+ F G+ PP+G +++GPPG GKT+ A+AVA
Sbjct: 202 HVKFEHIGGADRQFLEVCR-LAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQAVA 260
Query: 572 TESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNR 631
E + + E++S GE+E+ IR +F A+Q +P ++ +D+IDAIAPRR T
Sbjct: 261 GELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQRE 320
Query: 632 VTDRIINQLLTEMDGI-----------------------------QENAGVVVIAATNRP 662
+ R+++QL + +D + AGV+VI T+RP
Sbjct: 321 MERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTSRP 380
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 722
D +D L R GRF I + PDE AR +I + + + LA DV LK++A+ T GY GAD
Sbjct: 381 DAVDGRLRRTGRFQNEISLGIPDETAREKILEKICK-VNLAGDVTLKQIAKLTPGYVGAD 439
Query: 723 IAAVCREAAMIAMRRALEKGIIK-PGMK--------------------------ASEIRR 755
+ A+ REAA +A+ R + ++K G K SE+
Sbjct: 440 LQALIREAAKVAIDRVFDTIVVKNEGHKNLTVEQIKEELDRVLAWLQGDDDPSALSELNG 499
Query: 756 LAKVTMKDFEEALRKIGPSVSKE 778
+++ +DFE AL I P+ +E
Sbjct: 500 GLQISFEDFERALSTIQPAAKRE 522
>gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 607
Score = 365 bits (926), Expect = 1e-99
Identities = 235/638 (36%), Positives = 339/638 (52%), Gaps = 111/638 (17%)
Query: 162 NISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLL 221
N S+K E+E + +T++DIGG +D ++IRE IELPLK+ ++ K G++PPKG+LL
Sbjct: 44 NKSQKKKVEIEDKK---ITWDDIGGYEDAKKEIREYIELPLKNKDVATKYGLKPPKGMLL 100
Query: 222 YGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFI 281
+GPPG GKT++ +A+ANE+ F+ +N +IMSK+YGESE RLRE+F A +NAP I+F
Sbjct: 101 FGPPGCGKTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKNAPCILFF 160
Query: 282 DEIDAIAPKRSEVTGE-VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGR 340
DEID I KR TG+ V R+++ +L+ +DGL S VIV+G+TN P +D AL
Sbjct: 161 DEIDTIGVKRESHTGDSVTPRLLSLMLSEIDGLHSEDGVIVVGSTNVPQMLDKALL---- 216
Query: 341 FDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEE 400
R G+F K+I I
Sbjct: 217 ---------------------------------------------RAGRFDKLI--YIGP 229
Query: 401 VNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAAL 460
NK ++I Q+ + K D D+LA++T + GADLA L +EAA
Sbjct: 230 PNKEARKQILQI--------HCRGKPLAEDVDFDKLAEITERYSGADLANLCQEAARKVA 281
Query: 461 RRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWD---- 516
I +G + K+T DF E +K +PS +++ + D
Sbjct: 282 SEAIEKGA--------------DRKITMADFIELIKKYKPSITLQMIEDYEKFRLDFERR 327
Query: 517 -----------------DIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPP 559
DIGG ++K EL+E +E L + + + + P +GILLYGPP
Sbjct: 328 VRKGEEENELEEKLTLNDIGGYNEIKTELKELLELQLYHYKLLEQLRVPPIRGILLYGPP 387
Query: 560 GTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEID 619
G GKT++AKA+A IA+ G EI+ K + I+E+F +AR+ P +I +DE+D
Sbjct: 388 GVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEVFNRARENKPAIILLDELD 447
Query: 620 AIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLI 679
AIA +R + +I+NQLLTEMDGI+ VVVI TNR +DPALLRPGRFD++I
Sbjct: 448 AIASKRSYKSYGDSSKIVNQLLTEMDGIRSLKEVVVIGTTNRLKAIDPALLRPGRFDKII 507
Query: 680 LVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRAL 739
+P P+ + R +I + G + VD LA +TEGY+GAD+AA+ REA M
Sbjct: 508 HMPLPNREERLDILMKYI-GKEECEKVDCGILADQTEGYSGADLAALAREAKM------- 559
Query: 740 EKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
++K ++ R L T +D +AL KI PSV K
Sbjct: 560 --KVLKSILRGESNRTL---TREDLIDALNKIHPSVKK 592
Score = 270 bits (682), Expect = 6e-71
Identities = 134/301 (44%), Positives = 200/301 (65%), Gaps = 13/301 (4%)
Query: 493 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKG 552
+AL++ S ++V IE + WDDIGG ED K+E+RE +E PLK + YG+ PPKG
Sbjct: 38 KALQLQNKSQKKKVEIEDKKITWDDIGGYEDAKKEIREYIELPLKNKDVATKYGLKPPKG 97
Query: 553 ILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTV 612
+LL+GPPG GKT++ +A+A ES+ NF+ V +I+SKW GESE +RE+F AR+ AP +
Sbjct: 98 MLLFGPPGCGKTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKNAPCI 157
Query: 613 IFIDEIDAIAPRRGTDV-NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLR 671
+F DEID I +R + + VT R+++ +L+E+DG+ GV+V+ +TN P +LD ALLR
Sbjct: 158 LFFDEIDTIGVKRESHTGDSVTPRLLSLMLSEIDGLHSEDGVIVVGSTNVPQMLDKALLR 217
Query: 672 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 731
GRFD+LI + P+++AR +I ++H RG PLA+DVD +LA TE Y+GAD+A +C+EAA
Sbjct: 218 AGRFDKLIYIGPPNKEARKQILQIHCRGKPLAEDVDFDKLAEITERYSGADLANLCQEAA 277
Query: 732 MIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
A+EKG + K+TM DF E ++K PS++ + +E Y K + F+
Sbjct: 278 RKVASEAIEKGADR------------KITMADFIELIKKYKPSITLQMIEDYEKFRLDFE 325
Query: 792 Q 792
+
Sbjct: 326 R 326
Score = 181 bits (455), Expect = 2e-44
Identities = 103/246 (41%), Positives = 153/246 (61%), Gaps = 14/246 (5%)
Query: 118 ERLVGRPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITE-FTDFNIS-EKPVK--EVEK 173
E+ R + D+I++ + +PS +Q+ E + F + E+ V+ E E
Sbjct: 286 EKGADRKITMADFIEL----------IKKYKPSITLQMIEDYEKFRLDFERRVRKGEEEN 335
Query: 174 RMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLA 233
+ +T DIGG ++ +++E++EL L H +L E+L + P +G+LLYGPPG GKT++A
Sbjct: 336 ELEEKLTLNDIGGYNEIKTELKELLELQLYHYKLLEQLRVPPIRGILLYGPPGVGKTMMA 395
Query: 234 KAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE 293
KA+A N IA++G EIM K Y + ++EVF A EN PAII +DE+DAIA KRS
Sbjct: 396 KALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEVFNRARENKPAIILLDELDAIASKRSY 455
Query: 294 VTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
+ ++V QLL MDG++S +V+VIG TNR AIDPAL RPGRFD+ I + +P+R+
Sbjct: 456 KSYGDSSKIVNQLLTEMDGIRSLKEVVVIGTTNRLKAIDPALLRPGRFDKIIHMPLPNRE 515
Query: 354 GRKEIL 359
R +IL
Sbjct: 516 ERLDIL 521
>gb|AAF53216.1| (AE003637) CG5776 gene product [Drosophila melanogaster]
Length = 799
Score = 361 bits (917), Expect = 2e-98
Identities = 223/704 (31%), Positives = 370/704 (51%), Gaps = 124/704 (17%)
Query: 110 RDFVEWLHERLVGRPVVRGDYIKVGVLGQELTFVVTATQ---------------PSGVVQ 154
+D + L +V R + I + + LTF + Q P +Q
Sbjct: 183 QDAIALLKRDMVNRVFYKDSLIHMNFFNKSLTFRLERWQSTVEEALAGLSLDSKPLQFIQ 242
Query: 155 ITEFTDFNI--SEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLG 212
+T T ++ + +E E++++ +T IGGL ++ + E +E L L G
Sbjct: 243 VTNVTKLHLITDDANQQEEEQKISHRITKCQIGGLDRQLQLVEESMEYALGFRTL--PAG 300
Query: 213 IEPPKGVLLYGPPGTGKTLLAKAVA------NEANAYFIAINGPEIMSKYYGESEERLRE 266
+ +G+LLYG G GK+++ +A+ ++ + I IN E+ SK+ GE+E++L
Sbjct: 301 LRVSRGLLLYGATGCGKSMVLEAMCAVAEERSQGHVQLIRINSGEVYSKFLGETEQKLGA 360
Query: 267 VFKEAEENAP--AIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
+F+ A + P ++ I+++ + PK+ ++ KRV L+L+D L S ++
Sbjct: 361 IFERAYNHYPHPTLLLIEDVHNLCPKQEN--SDLVKRVSLAFLSLLDQLSSPSQL----- 413
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+ + +L ++ + P R
Sbjct: 414 ---------------------------KGSKTFVLATSSQIDTLHPSIR----------- 435
Query: 385 KREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFV 444
R G+ ++ ++++ E + ++K ++ +L DE ++ +A +THG+V
Sbjct: 436 -RAGRLDNEVELGAPS-SQARLEIVRCLIKSVEHQLSDEE--------VEHVASITHGYV 485
Query: 445 GADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALR 504
GADLA L A + +A+ P ++ AL ++PSA+R
Sbjct: 486 GADLANLVYAAML--------------QAQPNPLQM--------PHLQAALTRIKPSAMR 523
Query: 505 EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKT 564
EVLIE PNV W DIGG +++ +++A+EWPL + + F+ GI PP+GIL++GPPG KT
Sbjct: 524 EVLIECPNVQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGIKPPRGILMFGPPGCSKT 583
Query: 565 LLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPR 624
++AKA+ATES+ NF++++GPE+ S WVGESE+ +RE+FRKARQ AP ++F DEIDAI
Sbjct: 584 MIAKALATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVAPAIVFFDEIDAIGGE 643
Query: 625 R-----GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLI 679
R + + V +R++ QLLTE+DG++ V ++AATNRPD++D ALLRPGR DR++
Sbjct: 644 RSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRPGRIDRIL 703
Query: 680 LVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRAL 739
V P +AR EI K+ R MP+++DVD+++L + TEGY+GA+I AVC EAA+ A+ ++
Sbjct: 704 YVGLPQCEARREILKIKLRAMPISNDVDMEKLVQLTEGYSGAEIQAVCHEAALRALEQSF 763
Query: 740 EKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
E +K DFE AL+ + P S E ++ Y
Sbjct: 764 EAEDVK---------------WTDFEHALKAVPPRTSPELLKLY 792
>pir||T11652 probable transitional endoplasmic reticulum ATPase - fission yeast
(Schizosaccharomyces pombe) (fragment)
>gi|2330848|emb|CAB11085.1| (Z98533) transitional
endoplasmic reticulum atpase [Schizosaccharomyces pombe]
Length = 432
Score = 353 bits (896), Expect = 5e-96
Identities = 183/374 (48%), Positives = 248/374 (65%), Gaps = 13/374 (3%)
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFY 492
L+++A THG+VG+DLA+L EAAM +R + ID + + I EVLD L VT +F
Sbjct: 33 LEQIAAETHGYVGSDLASLCSEAAMQQIRE--KMDMIDLDEDEIDAEVLDSLGVTMDNFR 90
Query: 493 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKG 552
AL PSALRE ++EVPNV W+DIGGLE+VK+ELRE V+ P+ Y E F +G+TP KG
Sbjct: 91 FALGSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKG 150
Query: 553 ILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTV 612
+L +GPPGTGKTLLAKA+A E ANFI+V+GPE+LS W GESE N+R+IF KAR AAP V
Sbjct: 151 VLFFGPPGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCV 210
Query: 613 IFIDEIDAIAPRRGTDV--NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALL 670
+F+DE+D+IA RG + DR++NQLLTEMDG+ V VI ATNRPD +DPAL+
Sbjct: 211 VFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALM 270
Query: 671 RPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREA 730
RPGR D+LI VP PDE+ARF I + R P+A+DVDL+ +A+ T G++GAD+ V + A
Sbjct: 271 RPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRA 330
Query: 731 AMIAMRRALEKGIIKPG---------MKASEIRRLAKVTMKDFEEALRKIGPSVSKETME 781
+A++ ++E+ I + + E +++V EEA++ SVS +
Sbjct: 331 VKLAIKDSIEEDIKRENETGEAPADDVVMDEDASVSQVQRHHVEEAMKMARRSVSDAEVR 390
Query: 782 YYRKIQEQFKQARG 795
Y Q +RG
Sbjct: 391 RYEAYAHQLLTSRG 404
Score = 208 bits (523), Expect = 2e-52
Identities = 107/232 (46%), Positives = 149/232 (64%), Gaps = 3/232 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V +EDIGGL++V ++RE +++P+ + E F + G+ P KGVL +GPPGTGKTLLAKA+AN
Sbjct: 111 VRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIAN 170
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
E +A FI++ GPE++S ++GESE +R++F +A AP ++F+DE+D+IA R G+
Sbjct: 171 ECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKARGASAGDS 230
Query: 299 --EKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
RVV QLL MDG+ S+ V VIGATNRPD IDPAL RPGR D+ I V +PD + R
Sbjct: 231 GGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARF 290
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEE 408
ILQ R P+ D V K F ++ +A++ K EE
Sbjct: 291 SILQTQLRHTPVAEDVDLRAVAKATHGFS-GADLEFVVQRAVKLAIKDSIEE 341
Score = 80.8 bits (196), Expect = 6e-14
Identities = 42/105 (40%), Positives = 62/105 (59%)
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR + V PD R EI ++HT+ M LADDVDL+++A T GY G+D+A++C EAAM +
Sbjct: 1 DREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQI 60
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
R ++ + +E+ VTM +F AL PS +ET+
Sbjct: 61 REKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETV 105
>gb|AAG19767.1| (AE005062) cell division cycle protein; Cdc48a [Halobacterium sp.
NRC-1]
Length = 691
Score = 331 bits (840), Expect = 2e-89
Identities = 246/765 (32%), Positives = 367/765 (47%), Gaps = 106/765 (13%)
Query: 19 VGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWP---AYPEDEGLGIIRMDGTIRK 75
VG G + +T +++G++ GD V + G+++T A P A GL + +
Sbjct: 21 VGPGQLSFTAETRQQIGVAEGDAVTVTGSEDTVATVGPDTTAIAASSGLA----GADVLR 76
Query: 76 NAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRPVVRGDYIKVGV 135
N VG D VTV A+ A ++T+AP D + L L GR +V D I V +
Sbjct: 77 N--VGPTDTVTVAPADPSPAAELTVAPATSSTLEGD-ADALARALAGRHLVADDRIAVPL 133
Query: 136 LGQEL--TFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYED-IGGLKDVIE 192
+ T V T P G V +T T ++ + +GGL D
Sbjct: 134 FSGTVVVTLDVEDTTPGGPVTVTADTAITLTGHAADSGHADAEHATPADTRVGGLDDERG 193
Query: 193 KIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEI 252
+R ++ PL + + +G+ PP GVL++GP GTGKT L +AVA A+ +A+ E
Sbjct: 194 ALRRLVVAPLV-ADSYAAIGVRPPAGVLVHGPAGTGKTTLVRAVAAAAD---LAV---ES 246
Query: 253 MSKYYGESEERLREVFKEAEENAPA-IIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMD 311
++ + L V A + P ++F++ + A AP + D
Sbjct: 247 VAPEDAGDRDALAAVLDAARDAEPGCVVFVESLAAAAPDPTA-----------------D 289
Query: 312 GLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPD 371
G RG P A+ L R D + VG T ++P
Sbjct: 290 GASGRGS---------PSALGWLLDRVRGHDTVVVVGET------------TDPDAVDPA 328
Query: 372 FRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDK 431
R R G+F + + + P + I D V RL D
Sbjct: 329 LR------------RGGRFDAEVRVGVPD---------PAARRAILDVHTDGV--RLADA 365
Query: 432 L-LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRD 490
+ LD +AD THG+ GADL A+ +AA A + +RD
Sbjct: 366 VSLDAVADRTHGYTGADLTAVLVDAATRAAG-----------------SAAGPPVIRQRD 408
Query: 491 FYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP 550
AL V PS LR+ ++ P + DIGGL+ K+E+ VEWP +YP F+ P
Sbjct: 409 LEAALDAVGPSTLRDASVQTPTTTYQDIGGLDRAKREVVRTVEWPQRYPALFERLDAAAP 468
Query: 551 KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAP 610
G+LL+GPPGTGKT+LAKAVA + ANF++V GPE+++++VGESE+ +R++F +AR+ AP
Sbjct: 469 TGVLLHGPPGTGKTMLAKAVAASTDANFLSVDGPELMNRYVGESERGVRDLFERARRLAP 528
Query: 611 TVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALL 670
V+F+DE+D++AP R ++R+++QLLTE+DG+ V V+AATNR + +DPALL
Sbjct: 529 AVVFLDEVDSLAPARHDTDTGASERVVSQLLTELDGLSPRGSVAVLAATNRRESVDPALL 588
Query: 671 RPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREA 730
RPGR + + VP PD+ AR IF+V G+ +D LA T GYTG+DIA V RE
Sbjct: 589 RPGRIETQVAVPIPDQDARAAIFEVQLDGV-ATGRIDTTALAAATTGYTGSDIAGVVREG 647
Query: 731 AMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSV 775
A++AM E + + A++ L VT + A+ PSV
Sbjct: 648 ALLAM----EDHLRETEFDATDASGLV-VTQRHLRRAIETTAPSV 687
Score = 135 bits (336), Expect = 2e-30
Identities = 96/264 (36%), Positives = 137/264 (51%), Gaps = 28/264 (10%)
Query: 518 IGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQAN 577
+GGL+D + LR V PL +++ A G+ PP G+L++GP GTGKT L +AVA +
Sbjct: 185 VGGLDDERGALRRLVVAPL-VADSYAAIGVRPPAGVLVHGPAGTGKTTLVRAVAAAAD-- 241
Query: 578 FIAVRGPEILSKWVGESEKNIREIFRKARQAAP-TVIFIDEIDAIAPRRGTD--VNRVTD 634
+AV + + G+ + + + AR A P V+F++ + A AP D R +
Sbjct: 242 -LAVES--VAPEDAGDRDA-LAAVLDAARDAEPGCVVFVESLAAAAPDPTADGASGRGSP 297
Query: 635 RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFK 694
+ LL D ++ + VVV+ T PD +DPAL R GRFD + V PD AR I
Sbjct: 298 SALGWLL---DRVRGHDTVVVVGETTDPDAVDPALRRGGRFDAEVRVGVPDPAARRAILD 354
Query: 695 VHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIR 754
VHT G+ LAD V L +A RT GYTGAD+ AV +AA A A +I+
Sbjct: 355 VHTDGVRLADAVSLDAVADRTHGYTGADLTAVLVDAATRAAGSAAGPPVIR--------- 405
Query: 755 RLAKVTMKDFEEALRKIGPSVSKE 778
+D E AL +GPS ++
Sbjct: 406 ------QRDLEAALDAVGPSTLRD 423
>gb|AAG29874.1| (AF313486) valosin-containing protein [Homo sapiens]
Length = 305
Score = 317 bits (805), Expect = 2e-85
Identities = 156/273 (57%), Positives = 203/273 (74%), Gaps = 5/273 (1%)
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFY 492
L+++A+ THG VGADLAAL EAA+ A+R+ + ID E ETI EV++ L T DF
Sbjct: 24 LEQVANETHGHVGADLAALCSEAALQAIRK--KMDLIDLEDETIDAEVMNSLAATMDDFR 81
Query: 493 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKG 552
AL PSALRE ++EVP V W+DIGGLEDVK+EL+E V++P+++P+ F +G+TP KG
Sbjct: 82 WALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 141
Query: 553 ILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTV 612
+L YGPPG GKTLLAKA+A E QANFI+++GPE+L+ W GESE N+REIF KARQAAP V
Sbjct: 142 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCV 201
Query: 613 IFIDEIDAIAPRRGTDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPAL 669
+F DE+D+IA RG ++ DR+INQ+LTEMDG+ V +I ATNRPDI+DPA+
Sbjct: 202 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 261
Query: 670 LRPGRFDRLILVPAPDEKARFEIFKVHTRGMPL 702
LRPGR D+LI +P PDEK+R I K + R P+
Sbjct: 262 LRPGRPDQLIYIPLPDEKSRVAILKANLRKSPV 294
Score = 203 bits (512), Expect = 5e-51
Identities = 96/193 (49%), Positives = 138/193 (70%), Gaps = 3/193 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT+EDIGGL+DV +++E+++ P++HP+ F K G+ P KGVL YGPPG GKTLLAKA+AN
Sbjct: 102 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 161
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGE- 297
E A FI+I GPE+++ ++GESE +RE+F +A + AP ++F DE+D+IA R G+
Sbjct: 162 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 221
Query: 298 --VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
RV+ Q+L MDG+ ++ V +IGATNRPD IDPA+ RPGR D+ I + +PD + R
Sbjct: 222 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRPDQLIYIPLPDEKSR 281
Query: 356 KEILQIHTRGMPI 368
IL+ + R P+
Sbjct: 282 VAILKANLRKSPV 294
Score = 79.6 bits (193), Expect = 1e-13
Identities = 39/96 (40%), Positives = 60/96 (61%)
Query: 685 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGII 744
D R EI ++HT+ M LADDVDL+++A T G+ GAD+AA+C EAA+ A+R+ ++ +
Sbjct: 1 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 60
Query: 745 KPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
+ +E+ TM DF AL + PS +ET+
Sbjct: 61 EDETIDAEVMNSLAATMDDFRWALSQSNPSALRETV 96
>dbj|BAB14482.1| (AK023232) unnamed protein product [Homo sapiens]
Length = 620
Score = 317 bits (803), Expect = 4e-85
Identities = 224/670 (33%), Positives = 334/670 (49%), Gaps = 117/670 (17%)
Query: 9 LKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAI--AWPAYPEDEGLGI 66
LK+ RD G RL + LG G V+I + + AWP D G
Sbjct: 14 LKLLPLDARDRGTQRCRLGPAALHALGARLGSAVKISLPDGGSCLCTAWPR--RDGADGF 71
Query: 67 IRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPI---------------RFGRD 111
+++D + + G +G + R + V P + R
Sbjct: 72 VQLD-PLCASPGAAVGASRSRRSLSLNRLLLVPCPPLRRVAVWPVLRERAGAPGARNTAA 130
Query: 112 FVEWLHERLVGRPVVRGDYIKV--GVLG--QELTFVVTATQPSGVVQITEFTDFNISEKP 167
+E E L RP+ G + G G L V P +T T ++ +P
Sbjct: 131 VLEAAQELLRNRPISLGHVVVAPPGAPGLVAALHIVGGTPSPDPAGLVTPRTRVSLGGEP 190
Query: 168 VKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 227
E + + +GGL + + +RE++ LPL++P LG+ P+GVLL GPPG
Sbjct: 191 PSEAQPQPEV-----PLGGLSEAADSLRELLRLPLRYPRALTALGLAVPRGVLLAGPPGV 245
Query: 228 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENA---PAIIFIDEI 284
GKT L +AVA EA A +A++ P + GE+EE +R VF+ A E A P+++F+DE+
Sbjct: 246 GKTQLVQAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFLDEM 305
Query: 285 DAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDRE 344
DA+ P+R + E RVVAQ+L L+DG +V+V+GATNRPDA+DPALRR
Sbjct: 306 DALCPQRG--SRAPESRVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRR------- 356
Query: 345 IEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKS 404
P R R+ ++ T K
Sbjct: 357 -----PGRFDREVVIGTPTL--------------------------------------KQ 373
Query: 405 KEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLI 464
++E + + K+ + + L LA++T G+VGADL AL REAAM AL L
Sbjct: 374 RKEILQVITSKMPISSHVD---------LGLLAEMTVGYVGADLTALCREAAMHAL--LH 422
Query: 465 REGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV--LIEVPNVHWDDIGGLE 522
E D V+DE+ DF EA K ++PS+ R V L+++ V W++IGGLE
Sbjct: 423 SEKNQD-------NPVIDEI-----DFLEAFKNIQPSSFRSVIGLMDIKPVDWEEIGGLE 470
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
DVK +L++++EWPLK+P F G+T PKG+LLYGPPG KT L +A+AT +F++V
Sbjct: 471 DVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVS 530
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAI-----APRRGTDVNRVTDRII 637
G ++ S +VG+SEK + +IFR+AR + P ++F+DEID+I A + G DV +R++
Sbjct: 531 GADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSILGARSASKTGCDVQ---ERVL 587
Query: 638 NQLLTEMDGI 647
+ LL E+DG+
Sbjct: 588 SVLLNELDGV 597
Score = 212 bits (533), Expect = 2e-53
Identities = 123/279 (44%), Positives = 169/279 (60%), Gaps = 23/279 (8%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
EP + + EVP +GGL + LRE + PL+YP A A G+ P+G+LL GP
Sbjct: 189 EPPSEAQPQPEVP------LGGLSEAADSLRELLRLPLRYPRALTALGLAVPRGVLLAGP 242
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAA---PTVIFI 615
PG GKT L +AVA E+ A +AV P + GE+E+N+R +F++AR+ A P+++F+
Sbjct: 243 PGVGKTQLVQAVAREAGAELLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFL 302
Query: 616 DEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DE+DA+ P+RG+ R++ Q+LT +DG + VVV+ ATNRPD LDPAL RPGRF
Sbjct: 303 DEMDALCPQRGSRAPE--SRVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRF 360
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR +++ P K R EI +V T MP++ VDL LA T GY GAD+ A+CREAAM A+
Sbjct: 361 DREVVIGTPTLKQRKEILQVITSKMPISSHVDLGLLAEMTVGYVGADLTALCREAAMHAL 420
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPS 774
+ EK P + EI DF EA + I PS
Sbjct: 421 LHS-EKNQDNPVI--DEI---------DFLEAFKNIQPS 447
>emb|CAB99275.1| (AL390274) yeast cdc48 homologue; transitional endoplasmic
reticulum atpase [Schizosaccharomyces pombe]
Length = 418
Score = 309 bits (782), Expect = 1e-82
Identities = 169/376 (44%), Positives = 242/376 (63%), Gaps = 9/376 (2%)
Query: 3 EKKEVKLKVASAYQRDVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDE 62
++K L V A D ++ L TM L + GD V + G + + E+
Sbjct: 40 KRKPNSLVVDDATNDD--NSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEM 97
Query: 63 GLGIIRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAP---TEPIRFGRDFVEWLHE 118
G+ R++ +R N V LGD VT+ +++ A+++++ P T G F +L
Sbjct: 98 EDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKP 157
Query: 119 RLVG--RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPV-KEVEKRM 175
V RP+ +GD V +++ F V P +++ T + +P+ +E E+
Sbjct: 158 YFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESS 217
Query: 176 TTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKA 235
V Y+DIGG + + +IRE++ELPL+HP+LF+ +GI+PP+G+L+YGPPGTGKTL+A+A
Sbjct: 218 LAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARA 277
Query: 236 VANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT 295
VANE A+F INGPEIMSK GESE LR+ F+EAE+N+PAIIFIDEID+IAPKR +
Sbjct: 278 VANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTN 337
Query: 296 GEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
GEVE+RVV+QLL LMDG+K+R V+V+ ATNRP++IDPALRR GRFDRE++VG+PD GR
Sbjct: 338 GEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGR 397
Query: 356 KEILQIHTRGMPIEPD 371
EIL+IHT+ M + D
Sbjct: 398 LEILRIHTKNMKLADD 413
Score = 227 bits (573), Expect = 3e-58
Identities = 139/349 (39%), Positives = 200/349 (56%), Gaps = 25/349 (7%)
Query: 373 RKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKL 432
RKD VL +L D + E +I ++ + + + +I + D + + +
Sbjct: 84 RKDTVLIVLTDEEMEDGVARI-NRVVRNNLRVRLGDIVTINPCPDIKYAERISVL----- 137
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVL--------DEL 484
LAD G G+ + + A R IR+G + F R+V DE
Sbjct: 138 --PLADTVEGLTGSLFDVYLKPYFVEAYRP-IRKGDL-FVVRGSMRQVEFKVVDVAPDEF 193
Query: 485 KVTRRD---FYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEA 541
+ +D +E EP + + V +DDIGG ++RE VE PL++P+
Sbjct: 194 GIVSQDTIIHWEG----EPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQL 249
Query: 542 FKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREI 601
FK+ GI PP+GIL+YGPPGTGKTL+A+AVA E+ A F + GPEI+SK GESE N+R+
Sbjct: 250 FKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNLRKA 309
Query: 602 FRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNR 661
F +A + +P +IFIDEID+IAP+R V R+++QLLT MDG++ + VVV+AATNR
Sbjct: 310 FEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMAATNR 369
Query: 662 PDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKE 710
P+ +DPAL R GRFDR + V PD R EI ++HT+ M LADDVDL++
Sbjct: 370 PNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQ 418
>emb|CAA67594.1| (X99207) smallminded [Drosophila melanogaster]
Length = 943
Score = 298 bits (755), Expect = 2e-79
Identities = 154/324 (47%), Positives = 223/324 (68%), Gaps = 14/324 (4%)
Query: 477 PREVLD-ELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWP 535
P E D +T DF +A+K+++PSA RE I VP+ WDDIG LE +++EL+ AV P
Sbjct: 621 PEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAP 680
Query: 536 LKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESE 595
+KYPE + G+T P G+LL GPPG GKTLLAKA+A E+ NFI+V+GPE+++ +VGESE
Sbjct: 681 VKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESE 740
Query: 596 KNIREIFRKARQAAPTVIFIDEIDAIAPRR--GTDVNRVTDRIINQLLTEMDGIQENAGV 653
+ +R F++AR +AP VIF DE D++ P+R G D N RI+NQLLTEMDG++E GV
Sbjct: 741 RAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGV 800
Query: 654 VVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKE 710
++AATNRPDI+DPA+LRPGR D ++ V P++ R EI K T+ LADDVDL E
Sbjct: 801 YILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDE 860
Query: 711 LARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRK 770
+A +TEGYTGAD+A + ++A+M ++R++L G + + L V + F+EAL++
Sbjct: 861 IAAQTEGYTGADLAGLVKQASMFSLRQSLNNG-------DTNLDDLC-VRSQHFQEALQQ 912
Query: 771 IGPSVSKETMEYYRKIQEQFKQAR 794
+ PSV+++ + Y K++ ++ R
Sbjct: 913 LRPSVNEQDRKIYDKLRLKYAAPR 936
Score = 202 bits (509), Expect = 1e-50
Identities = 129/356 (36%), Positives = 187/356 (52%), Gaps = 69/356 (19%)
Query: 149 PSGVVQITEFTDFNISEKPVKEVEKRMTT-GVTYEDIGGLKDVIEKIREMIELPLKHPEL 207
P+ + + +F D +P + E +T T++DIG L+ + E+++ + P+K+PE+
Sbjct: 627 PNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEM 686
Query: 208 FEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREV 267
E+LG+ P GVLL GPPG GKTLLAKA+ANEA FI++ GPE+M+ Y GESE +R
Sbjct: 687 LERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRAC 746
Query: 268 FKEAEENAPAIIFIDEIDAIAPKRSE--VTGEVEKRVVAQLLALMDGLKSRGKVIVIGAT 325
F+ A +AP +IF DE D++ PKRS+ R+V QLL MDG++ R V ++ AT
Sbjct: 747 FQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAAT 806
Query: 326 NRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFK 385
NRPD IDPA+ RPGR D + VG P++ R EIL+ T
Sbjct: 807 NRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATT---------------------- 844
Query: 386 REGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVG 445
+ GK + D D +L DE+ A T G+ G
Sbjct: 845 KNGKRPVLAD---------------------DVDL-DEI------------AAQTEGYTG 870
Query: 446 ADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPS 501
ADLA L ++A+M +LR+ + G + LD+L V + F EAL+ + PS
Sbjct: 871 ADLAGLVKQASMFSLRQSLNNGDTN----------LDDLCVRSQHFQEALQQLRPS 916
Score = 176 bits (443), Expect = 6e-43
Identities = 85/204 (41%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
++ DIGG+ ++++ EM+ + +K PE + +LG+ P +G+LL+GPPG GKT LA+A++ +
Sbjct: 248 SFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQ 306
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVE 299
+ I E++ GESEER+REVF +A +P ++FIDEIDAI R + ++E
Sbjct: 307 LKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDME 366
Query: 300 KRVVAQLLALMDGLKSR---GKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
+R+V+QL++ +D LK+ V+VI AT RPD +DP LRR GRFD EI + +P R+ R+
Sbjct: 367 RRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERR 426
Query: 357 EILQIHTRGMPIEPDFRKDDVLKI 380
EIL+I G+ ++P D + ++
Sbjct: 427 EILRIQCEGLSVDPKLNYDKIAEL 450
Score = 174 bits (436), Expect = 4e-42
Identities = 98/265 (36%), Positives = 156/265 (57%), Gaps = 6/265 (2%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
R++ ++ P + DIGG++ +EL E + +K PE + G+ P +G+LL+GPPG GK
Sbjct: 238 RDLEVQHPTESFRDIGGMDSTLKELCEMLIH-IKSPEFYFQLGLLPSRGLLLHGPPGCGK 296
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
T LA+A++ + + + + E++ GESE+ IRE+F +A +P V+FIDEIDAI
Sbjct: 297 TFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGG 356
Query: 624 RRGTDVNRVTDRIINQLLTEMDGIQEN---AGVVVIAATNRPDILDPALLRPGRFDRLIL 680
R + RI++QL++ +D ++ N VVVIAAT RPD+LDP L R GRFD I
Sbjct: 357 NRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIA 416
Query: 681 VPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALE 740
+ P K R EI ++ G+ + ++ ++A T GY GAD+ A+ AA +A++R
Sbjct: 417 IHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSM 476
Query: 741 KGIIKPGMKASEIRRLAKVTMKDFE 765
K + + A+ + + VT+ D E
Sbjct: 477 KKFRE--LHAASEKNMTTVTLDDDE 499
>gb|AAF50566.1| (AE003559) smid gene product [Drosophila melanogaster]
Length = 944
Score = 298 bits (755), Expect = 2e-79
Identities = 154/324 (47%), Positives = 223/324 (68%), Gaps = 14/324 (4%)
Query: 477 PREVLD-ELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWP 535
P E D +T DF +A+K+++PSA RE I VP+ WDDIG LE +++EL+ AV P
Sbjct: 622 PEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAP 681
Query: 536 LKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESE 595
+KYPE + G+T P G+LL GPPG GKTLLAKA+A E+ NFI+V+GPE+++ +VGESE
Sbjct: 682 VKYPEMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESE 741
Query: 596 KNIREIFRKARQAAPTVIFIDEIDAIAPRR--GTDVNRVTDRIINQLLTEMDGIQENAGV 653
+ +R F++AR +AP VIF DE D++ P+R G D N RI+NQLLTEMDG++E GV
Sbjct: 742 RAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGV 801
Query: 654 VVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG---MPLADDVDLKE 710
++AATNRPDI+DPA+LRPGR D ++ V P++ R EI K T+ LADDVDL E
Sbjct: 802 YILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDE 861
Query: 711 LARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRK 770
+A +TEGYTGAD+A + ++A+M ++R++L G + + L V + F+EAL++
Sbjct: 862 IAAQTEGYTGADLAGLVKQASMFSLRQSLNNG-------DTNLDDLC-VRSQHFQEALQQ 913
Query: 771 IGPSVSKETMEYYRKIQEQFKQAR 794
+ PSV+++ + Y K++ ++ R
Sbjct: 914 LRPSVNEQDRKIYDKLRLKYAAPR 937
Score = 202 bits (509), Expect = 1e-50
Identities = 129/356 (36%), Positives = 187/356 (52%), Gaps = 69/356 (19%)
Query: 149 PSGVVQITEFTDFNISEKPVKEVEKRMTT-GVTYEDIGGLKDVIEKIREMIELPLKHPEL 207
P+ + + +F D +P + E +T T++DIG L+ + E+++ + P+K+PE+
Sbjct: 628 PNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEM 687
Query: 208 FEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREV 267
E+LG+ P GVLL GPPG GKTLLAKA+ANEA FI++ GPE+M+ Y GESE +R
Sbjct: 688 LERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRAC 747
Query: 268 FKEAEENAPAIIFIDEIDAIAPKRSE--VTGEVEKRVVAQLLALMDGLKSRGKVIVIGAT 325
F+ A +AP +IF DE D++ PKRS+ R+V QLL MDG++ R V ++ AT
Sbjct: 748 FQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAAT 807
Query: 326 NRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFK 385
NRPD IDPA+ RPGR D + VG P++ R EIL+ T
Sbjct: 808 NRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATT---------------------- 845
Query: 386 REGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVG 445
+ GK + D D +L DE+ A T G+ G
Sbjct: 846 KNGKRPVLAD---------------------DVDL-DEI------------AAQTEGYTG 871
Query: 446 ADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPS 501
ADLA L ++A+M +LR+ + G + LD+L V + F EAL+ + PS
Sbjct: 872 ADLAGLVKQASMFSLRQSLNNGDTN----------LDDLCVRSQHFQEALQQLRPS 917
Score = 176 bits (443), Expect = 6e-43
Identities = 85/204 (41%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
++ DIGG+ ++++ EM+ + +K PE + +LG+ P +G+LL+GPPG GKT LA+A++ +
Sbjct: 249 SFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLARAISGQ 307
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVE 299
+ I E++ GESEER+REVF +A +P ++FIDEIDAI R + ++E
Sbjct: 308 LKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDME 367
Query: 300 KRVVAQLLALMDGLKSR---GKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
+R+V+QL++ +D LK+ V+VI AT RPD +DP LRR GRFD EI + +P R+ R+
Sbjct: 368 RRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERR 427
Query: 357 EILQIHTRGMPIEPDFRKDDVLKI 380
EIL+I G+ ++P D + ++
Sbjct: 428 EILRIQCEGLSVDPKLNYDKIAEL 451
Score = 174 bits (436), Expect = 4e-42
Identities = 98/265 (36%), Positives = 156/265 (57%), Gaps = 6/265 (2%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
R++ ++ P + DIGG++ +EL E + +K PE + G+ P +G+LL+GPPG GK
Sbjct: 239 RDLEVQHPTESFRDIGGMDSTLKELCEMLIH-IKSPEFYFQLGLLPSRGLLLHGPPGCGK 297
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
T LA+A++ + + + + E++ GESE+ IRE+F +A +P V+FIDEIDAI
Sbjct: 298 TFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGG 357
Query: 624 RRGTDVNRVTDRIINQLLTEMDGIQEN---AGVVVIAATNRPDILDPALLRPGRFDRLIL 680
R + RI++QL++ +D ++ N VVVIAAT RPD+LDP L R GRFD I
Sbjct: 358 NRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIA 417
Query: 681 VPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALE 740
+ P K R EI ++ G+ + ++ ++A T GY GAD+ A+ AA +A++R
Sbjct: 418 IHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSM 477
Query: 741 KGIIKPGMKASEIRRLAKVTMKDFE 765
K + + A+ + + VT+ D E
Sbjct: 478 KKFRE--LHAASEKNMTTVTLDDDE 500
>pir||T23322 hypothetical protein K04G2.3 - Caenorhabditis elegans
>gi|3878262|emb|CAB00040.1| (Z75712) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=305.8,
E-value=1.6e-88, N=1~cDNA EST yk353e8.5 comes from this
gene [Caenorhabditis elegans]
Length = 724
Score = 296 bits (749), Expect = 8e-79
Identities = 158/362 (43%), Positives = 228/362 (62%), Gaps = 45/362 (12%)
Query: 435 ELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEA 494
++A THGF G DL +L + A A G+ E +A
Sbjct: 402 DVARHTHGFTGGDLCSLLKAAKFA-------RGRTHLERVN-----------------DA 437
Query: 495 LKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGIL 554
K + P+ +R+ ++EVPNV W+DIGG E++K E+++AV WP K+PEAF+ +GI PP GIL
Sbjct: 438 RKRIRPTGIRQFILEVPNVSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGIL 497
Query: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIF 614
LYGPPG KTL+A+A+A+E++ NF+AV+GPE+ SKWVG+SEK IR++F +ARQ APT++F
Sbjct: 498 LYGPPGCSKTLIARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVF 557
Query: 615 IDEIDAIAPRRGTDVNR-VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPG 673
DEIDA+ RG++ + V+DR++ QLLTE+DG+++++ V+++AATNRPD LD ALLRPG
Sbjct: 558 FDEIDAVGSSRGSEKSSGVSDRVLAQLLTELDGLEKSSRVILLAATNRPDQLDSALLRPG 617
Query: 674 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDV-DLKELARRTEGYTGADIAAVCREAAM 732
R DR I V P E R I ++ T+ M D V + +L +T GY+GA++ AVCR AAM
Sbjct: 618 RLDRAIYVGLPCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRTAAM 677
Query: 733 IAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQ 792
AMR +++ I++ FE+AL +V T Y +I + FK
Sbjct: 678 FAMRESIDATIVQ---------------WTHFEQAL----AAVVSRTEAYLLEIYDDFKA 718
Query: 793 AR 794
R
Sbjct: 719 GR 720
Score = 198 bits (497), Expect = 3e-49
Identities = 97/201 (48%), Positives = 139/201 (68%), Gaps = 1/201 (0%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V++ DIGG +++ +I++ + P KHPE FE+ GI+PP G+LLYGPPG KTL+A+A+A+
Sbjct: 456 VSWNDIGGNEELKLEIQQAVIWPQKHPEAFERFGIDPPAGILLYGPPGCSKTLIARALAS 515
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
EA F+A+ GPE+ SK+ G+SE+ +R++F A + AP I+F DEIDA+ R SE +
Sbjct: 516 EAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFDEIDAVGSSRGSEKSSG 575
Query: 298 VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKE 357
V RV+AQLL +DGL+ +VI++ ATNRPD +D AL RPGR DR I VG+P R+
Sbjct: 576 VSDRVLAQLLTELDGLEKSSRVILLAATNRPDQLDSALLRPGRLDRAIYVGLPCEVTRRA 635
Query: 358 ILQIHTRGMPIEPDFRKDDVL 378
IL++ T+ M + R D L
Sbjct: 636 ILEMRTKKMKFDDTVRTIDKL 656
>gi|11419443 peroxisome biogenesis factor 1 [Homo sapiens]
Length = 1303
Score = 287 bits (727), Expect = 3e-76
Identities = 184/547 (33%), Positives = 286/547 (51%), Gaps = 78/547 (14%)
Query: 219 VLLYGPPGTGKTLLAKAVANEA----NAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
+LL G G+GK+ LAKA+ EA +A+ ++ + K ++ L F EA
Sbjct: 615 LLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEAVWM 674
Query: 275 APAIIFIDEIDAIA-----PKRSEVTGEVEKRVVAQLLALMDGLK---SRGKVIVIGATN 326
P+++ +D++D IA P+ V+ + +A AL D +K S G ++ +
Sbjct: 675 QPSVVLLDDLDLIAGLPAVPEHEHSPDAVQSQRLAH--ALNDMIKEFISMGSLVAL---- 728
Query: 327 RPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKR 386
+ Q L + +G+ I
Sbjct: 729 --------------------IATSQSQQSLHPLLVSAQGVHIF----------------- 751
Query: 387 EGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGA 446
+ ++ + +E+ ++L + D + D L +A T GFV
Sbjct: 752 ---------QCVQHIQPPNQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFVAR 802
Query: 447 DLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV 506
D L A + L R ++I ++L +T DF +AL+ P++LR V
Sbjct: 803 DFTVLVDRAIHSRLSR-----------QSISTR--EKLVLTTLDFQKALRGFLPASLRSV 849
Query: 507 LIEVP-NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTL 565
+ P ++ WD IGGL +V+Q L + ++ P KYPE F I GILLYGPPGTGKTL
Sbjct: 850 NLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTL 909
Query: 566 LAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR 625
LA +A ES+ NFI+V+GPE+LSK++G SE+ +R+IF +A+ A P ++F DE ++IAPRR
Sbjct: 910 LAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRR 969
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
G D VTDR++NQLLT++DG++ GV V+AAT+RPD++DPALLRPGR D+ + P PD
Sbjct: 970 GHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPD 1029
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
+ +R EI V + +PLADDVDL+ +A T+ +TGAD+ A+ A + A+ L ++
Sbjct: 1030 QVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSSGLQ 1089
Query: 746 PGMKASE 752
G +S+
Sbjct: 1090 DGSSSSD 1096
Score = 182 bits (458), Expect = 1e-44
Identities = 91/204 (44%), Positives = 129/204 (62%)
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
++ IGGL +V + + + I+LP K+PELF L I G+LLYGPPGTGKTLLA +A E+
Sbjct: 859 WDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARES 918
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
FI++ GPE++SKY G SE+ +R++F A+ P I+F DE ++IAP+R V
Sbjct: 919 RMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTD 978
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
RVV QLL +DG++ V V+ AT+RPD IDPAL RPGR D+ + PD+ R EIL
Sbjct: 979 RVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILN 1038
Query: 361 IHTRGMPIEPDFRKDDVLKILEDF 384
+ + +P+ D V + + F
Sbjct: 1039 VLSDSLPLADDVDLQHVASVTDSF 1062
>gi|4505725 peroxisome biogenesis factor 1 [Homo sapiens]
>gi|8134613|sp|O43933|PEX1_HUMAN PEROXISOME BIOGENESIS
FACTOR 1 (PEROXIN-1) (PEROXISOME BIOGENESIS DISORDER
PROTEIN 1) >gi|2655141|gb|AAB87880.1| (AF026086)
peroxisome biogenesis disorder protein 1 [Homo sapiens]
>gi|2827156|gb|AAB99758.1| (AF030356) peroxisome
biogenesis gene 1 [Homo sapiens]
>gi|6015438|dbj|BAA85162.1| (AB008112) PEX1 [Homo
sapiens]
Length = 1283
Score = 287 bits (727), Expect = 3e-76
Identities = 184/547 (33%), Positives = 286/547 (51%), Gaps = 78/547 (14%)
Query: 219 VLLYGPPGTGKTLLAKAVANEA----NAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
+LL G G+GK+ LAKA+ EA +A+ ++ + K ++ L F EA
Sbjct: 595 LLLTGGKGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEAVWM 654
Query: 275 APAIIFIDEIDAIA-----PKRSEVTGEVEKRVVAQLLALMDGLK---SRGKVIVIGATN 326
P+++ +D++D IA P+ V+ + +A AL D +K S G ++ +
Sbjct: 655 QPSVVLLDDLDLIAGLPAVPEHEHSPDAVQSQRLAH--ALNDMIKEFISMGSLVAL---- 708
Query: 327 RPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKR 386
+ Q L + +G+ I
Sbjct: 709 --------------------IATSQSQQSLHPLLVSAQGVHIF----------------- 731
Query: 387 EGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGA 446
+ ++ + +E+ ++L + D + D L +A T GFV
Sbjct: 732 ---------QCVQHIQPPNQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFVAR 782
Query: 447 DLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV 506
D L A + L R ++I ++L +T DF +AL+ P++LR V
Sbjct: 783 DFTVLVDRAIHSRLSR-----------QSISTR--EKLVLTTLDFQKALRGFLPASLRSV 829
Query: 507 LIEVP-NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTL 565
+ P ++ WD IGGL +V+Q L + ++ P KYPE F I GILLYGPPGTGKTL
Sbjct: 830 NLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTL 889
Query: 566 LAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR 625
LA +A ES+ NFI+V+GPE+LSK++G SE+ +R+IF +A+ A P ++F DE ++IAPRR
Sbjct: 890 LAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRR 949
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
G D VTDR++NQLLT++DG++ GV V+AAT+RPD++DPALLRPGR D+ + P PD
Sbjct: 950 GHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPD 1009
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
+ +R EI V + +PLADDVDL+ +A T+ +TGAD+ A+ A + A+ L ++
Sbjct: 1010 QVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSSGLQ 1069
Query: 746 PGMKASE 752
G +S+
Sbjct: 1070 DGSSSSD 1076
Score = 182 bits (458), Expect = 1e-44
Identities = 91/204 (44%), Positives = 129/204 (62%)
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
++ IGGL +V + + + I+LP K+PELF L I G+LLYGPPGTGKTLLA +A E+
Sbjct: 839 WDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARES 898
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
FI++ GPE++SKY G SE+ +R++F A+ P I+F DE ++IAP+R V
Sbjct: 899 RMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTD 958
Query: 301 RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
RVV QLL +DG++ V V+ AT+RPD IDPAL RPGR D+ + PD+ R EIL
Sbjct: 959 RVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILN 1018
Query: 361 IHTRGMPIEPDFRKDDVLKILEDF 384
+ + +P+ D V + + F
Sbjct: 1019 VLSDSLPLADDVDLQHVASVTDSF 1042
>sp|Q58576|PRS1_METJA PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) (26S PROTEASE REGULATORY
SUBUNIT HOMOLOG) >gi|2127779|pir||G64446 ATP-dependent
26S proteosome regulatory subunit 4 homolog -
Methanococcus jannaschii >gi|1591803|gb|AAB99179.1|
(U67559) proteasome regulatory AAA-ATPase [Methanococcus
jannaschii]
Length = 430
Score = 284 bits (720), Expect = 2e-75
Identities = 150/266 (56%), Positives = 187/266 (69%), Gaps = 20/266 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E PNV ++DIGGLE QE+RE VE PLK+PE F+ GI PPKGILLYGPPGTGKTLLAK
Sbjct: 163 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 222
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG-- 626
AVATE+ A FI V G E++ K++GE +++IF+ A++ AP++IFIDEIDAIA +R
Sbjct: 223 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 282
Query: 627 -TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
T +R R + QLL EMDG V +I ATNRPDILDPA+LRPGRFDR+I VPAPD
Sbjct: 283 LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 342
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
EK R EI K+HTR M LA+DV+L+E+A+ TEG GA++ A+C EA M A+R
Sbjct: 343 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR--------- 393
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKI 771
E+R VTM DF +A+ KI
Sbjct: 394 ------ELRDY--VTMDDFRKAVEKI 411
Score = 252 bits (638), Expect = 8e-66
Identities = 129/216 (59%), Positives = 165/216 (75%), Gaps = 5/216 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R V YEDIGGL+ +++IRE++ELPLKHPELFEK+GIEPPKG+LLYGPPGTGK
Sbjct: 160 EVDER--PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGK 217
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLAKAVA E NA FI + G E++ K+ GE ++++FK A+E AP+IIFIDEIDAIA
Sbjct: 218 TLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA 277
Query: 290 KRSEVT--GEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR++ G+ E +R + QLLA MDG +RG V +IGATNRPD +DPA+ RPGRFDR IE
Sbjct: 278 KRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIE 337
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILE 382
V PD +GR EIL+IHTR M + D +++ K+ E
Sbjct: 338 VPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTE 373
>sp|P46463|PEX1_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS1 (PEROXIN-1)
>gi|1076972|pir||A55152 PAS1 protein - yeast (Pichia
pastoris) >gi|537420|emb|CAA85450.1| (Z36987) PAS1
[Pichia pastoris]
Length = 1157
Score = 284 bits (718), Expect = 3e-75
Identities = 173/556 (31%), Positives = 294/556 (52%), Gaps = 43/556 (7%)
Query: 199 ELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAN--AYFIAI-NGPEIMSK 255
+ P L E L G LL+G G+GK+L+ VA +F+ + N +IMS+
Sbjct: 499 QYPTAQENLIESLSKIASGGSLLFGTSGSGKSLVISQVAQIVTNKGHFVKLLNCDKIMSE 558
Query: 256 YYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQ-LLALMDGLK 314
Y ++F E AP+++ ++++D++ P E + + R +++ ++ +
Sbjct: 559 SYNNLRGIFEDIFSEVSWKAPSLLILEDLDSLIPAEQEHSDSSQSRQLSEYFISKLSAQT 618
Query: 315 SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRK 374
+ ++ ++ ++++ + + + ++ PD++ RK+ILQ + + + F
Sbjct: 619 INRDITILASSKSKESLNSLIFTTHLIEHDFQLRAPDKEARKQILQSYLDTLNV---FCS 675
Query: 375 DDVLKILEDFKREGKFTK----IIDKAIEEVNKSKEEEIPQVLKKIDAEL-YDEVKTRLI 429
+ L + EG K + D+A ++ +L D+EL +E T ++
Sbjct: 676 EGELLNNIAVETEGYLPKDLKVLCDRAYHDLISR------DILADSDSELDIEESSTPIL 729
Query: 430 DKLLDELA----DVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELK 485
+ + ++A ++ +G G +L + +D TI ++
Sbjct: 730 NGSVGDIANKQSEIENGISGLELTNNSSSTI-----------AVDKHGATIQKD------ 772
Query: 486 VTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAY 545
+F AL P +LR V ++ +V WDDIGGL D K L E +EWP KY F +
Sbjct: 773 ----NFDSALSGYIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSC 828
Query: 546 GITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA 605
+ GILLYG PG GKTLLA AVA + NFI+++GPEIL+K++G SE+++RE+F +A
Sbjct: 829 PLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA 888
Query: 606 RQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
+ A P ++F DE D+IAP+RG D VTDR++NQ+LT+MDG + GV V+AAT+RPD++
Sbjct: 889 QAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLI 948
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
D ALLRPGR D+ ++ PD R +I + TR M ++ V+L +A G++GAD+ A
Sbjct: 949 DSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQA 1008
Query: 726 VCREAAMIAMRRALEK 741
+ A + A+ L K
Sbjct: 1009 LAYNAYLKAVHEKLTK 1024
Score = 172 bits (431), Expect = 2e-41
Identities = 90/196 (45%), Positives = 121/196 (60%)
Query: 173 KRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLL 232
K + V ++DIGGL+D + E +E P K+ +F + G+LLYG PG GKTLL
Sbjct: 790 KLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLL 849
Query: 233 AKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRS 292
A AVA + FI+I GPEI++KY G SE+ +RE+F+ A+ P I+F DE D+IAPKR
Sbjct: 850 ASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRG 909
Query: 293 EVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
+ V RVV Q+L MDG + V V+ AT+RPD ID AL RPGR D+ + +PD
Sbjct: 910 HDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDF 969
Query: 353 QGRKEILQIHTRGMPI 368
R +ILQ TR M +
Sbjct: 970 DDRLDILQSVTRNMNV 985
>pir||A70632 hypothetical protein Rv0435c - Mycobacterium tuberculosis (strain
H37RV) >gi|1817701|emb|CAB06575.1| (Z84724) hypothetical
protein Rv0435c [Mycobacterium tuberculosis]
Length = 728
Score = 282 bits (713), Expect = 1e-74
Identities = 156/348 (44%), Positives = 220/348 (62%), Gaps = 22/348 (6%)
Query: 430 DKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRR 489
D LDE+A T GFV ADLAAL REAA+ A R +G+ + +
Sbjct: 391 DLNLDEIASRTPGFVVADLAALVREAALRAASRASADGRPPM--------------LHQD 436
Query: 490 DFYEALKMVEP---SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYG 546
D AL ++ P SA EV V +V DD+G + KQ L EAV WPL++P+ F G
Sbjct: 437 DLLGALTVIRPLSRSASDEVT--VGDVTLDDVGDMAAAKQALTEAVLWPLQHPDTFARLG 494
Query: 547 ITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKAR 606
+ PP+G+LLYGPPG GKT + +A+A+ Q + AV+G E++ KWVG SEK +RE+FR+AR
Sbjct: 495 VEPPRGVLLYGPPGCGKTFVVRALASTGQLSVHAVKGSELMDKWVGSSEKAVRELFRRAR 554
Query: 607 QAAPTVIFIDEIDAIAPRRGTDVNR-VTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
+AP+++F+DE+DA+APRRG + V+DR++ LLTE+DGI VV++ ATNRPD++
Sbjct: 555 DSAPSLVFLDELDALAPRRGQSFDSGVSDRVVAALLTELDGIDPLRDVVMLGATNRPDLI 614
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
DPALLRPGR +RL+ V PD AR EI + + +PL+ DVDL E+A +GY+ AD A
Sbjct: 615 DPALLRPGRLERLVFVEPPDAAARREILRTAGKSIPLSSDVDLDEVAAGLDGYSAADCVA 674
Query: 726 VCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEA-LRKIG 772
+ REAA+ AMRR+++ + A+ R + ++ + A LRK G
Sbjct: 675 LLREAALTAMRRSIDAANVTAADLAT-ARETVRASLDPLQVASLRKFG 721
Score = 190 bits (477), Expect = 6e-47
Identities = 94/238 (39%), Positives = 148/238 (61%), Gaps = 2/238 (0%)
Query: 169 KEVEKRMTTG-VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 227
+ +T G VT +D+G + + + E + PL+HP+ F +LG+EPP+GVLLYGPPG
Sbjct: 450 RSASDEVTVGDVTLDDVGDMAAAKQALTEAVLWPLQHPDTFARLGVEPPRGVLLYGPPGC 509
Query: 228 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAI 287
GKT + +A+A+ A+ G E+M K+ G SE+ +RE+F+ A ++AP+++F+DE+DA+
Sbjct: 510 GKTFVVRALASTGQLSVHAVKGSELMDKWVGSSEKAVRELFRRARDSAPSLVFLDELDAL 569
Query: 288 APKRSE-VTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
AP+R + V RVVA LL +DG+ V+++GATNRPD IDPAL RPGR +R +
Sbjct: 570 APRRGQSFDSGVSDRVVAALLTELDGIDPLRDVVMLGATNRPDLIDPALLRPGRLERLVF 629
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKS 404
V PD R+EIL+ + +P+ D D+V L+ + + + A+ + +S
Sbjct: 630 VEPPDAAARREILRTAGKSIPLSSDVDLDEVAAGLDGYSAADCVALLREAALTAMRRS 687
Score = 115 bits (286), Expect = 2e-24
Identities = 121/475 (25%), Positives = 195/475 (40%), Gaps = 47/475 (9%)
Query: 18 DVGRGIVRLDRKTMRELGISPGDVVEIIGTKNTAAIAWPAYPEDEGLGIIRMDGTIRKNA 77
D RG+VRL + LGI D V + G++ TAA+A A D +G + +D NA
Sbjct: 22 DSRRGVVRLHPNAIAALGIREWDAVSLTGSRTTAAVAGLA-AADTAVGTVLLDDVTLSNA 80
Query: 78 GVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRPVVRGDYIK----- 132
G+ G EV V V A+ VTL+ + V L + L+G+ + GD +
Sbjct: 81 GLREGTEVIVSPVTVYGARSVTLSGSTLATQSVPPVT-LRQALLGKVMTVGDAVSLLPRD 139
Query: 133 -----------------VGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRM 175
VG+ VT P G V + V
Sbjct: 140 LGPGTSTSAASRALAAAVGISWTSELLTVTGVDPDGPVSVQP-NSLVTWGAGVPAAMGTS 198
Query: 176 TTG--------VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 227
T G + E++ G + K+ E ++L L P L + LG GVL+ GP G
Sbjct: 199 TAGQVSISSPEIQIEELKGAQPQAAKLTEWLKLALDEPHLLQTLGAGTNLGVLVSGPAGV 258
Query: 228 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAI 287
GK L +AV + + ++GPEI + G+ + + +A + ++ I + DA+
Sbjct: 259 GKATLVRAVCD--GRRLVTLDGPEIGALAAGDRVKAVASAV-QAVRHEGGVLLITDADAL 315
Query: 288 APKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEV 347
P +E V + +L+ + + V++I + RPD +D LR P DRE+ +
Sbjct: 316 LPAAAE-------PVASLILSELRTAVATAGVVLIATSARPDQLDARLRSPELCDRELGL 368
Query: 348 GVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEE 407
+PD RK +L+ +P D D++ F + + A+ +++ +
Sbjct: 369 PLPDAATRKSLLEALLNPVP-TGDLNLDEIASRTPGFVVADLAALVREAALRAASRASAD 427
Query: 408 EIPQVLKKIDAELYDEVKTRLIDKLLDE--LADVTHGFVGADLAALAREAAMAAL 460
P +L + D V L DE + DVT VG D+AA + A L
Sbjct: 428 GRPPMLHQDDLLGALTVIRPLSRSASDEVTVGDVTLDDVG-DMAAAKQALTEAVL 481
Score = 102 bits (253), Expect = 1e-20
Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 11/242 (4%)
Query: 501 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPG 560
S +V I P + +++ G + +L E ++ L P + G G+L+ GP G
Sbjct: 198 STAGQVSISSPEIQIEELKGAQPQAAKLTEWLKLALDEPHLLQTLGAGTNLGVLVSGPAG 257
Query: 561 TGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDA 620
GK L +AV + + + GPEI + G+ K + + R V+ I + DA
Sbjct: 258 VGKATLVRAVCDGRR--LVTLDGPEIGALAAGDRVKAVASAVQAVRHEGG-VLLITDADA 314
Query: 621 IAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLIL 680
+ P + + + +L+E+ AGVV+IA + RPD LD L P DR +
Sbjct: 315 LLPA-------AAEPVASLILSELRTAVATAGVVLIATSARPDQLDARLRSPELCDRELG 367
Query: 681 VPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALE 740
+P PD R + + +P D++L E+A RT G+ AD+AA+ REAA+ A RA
Sbjct: 368 LPLPDAATRKSLLEALLNPVP-TGDLNLDEIASRTPGFVVADLAALVREAALRAASRASA 426
Query: 741 KG 742
G
Sbjct: 427 DG 428
>sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROXIN-6)
>gi|1078611|pir||A53121 peroxisome assembly protein PAY4
- yeast (Yarrowia lipolytica) >gi|393291|gb|AAA16622.1|
(L23858) ATPase [Yarrowia lipolytica]
Length = 1025
Score = 276 bits (699), Expect = 6e-73
Identities = 260/875 (29%), Positives = 401/875 (45%), Gaps = 181/875 (20%)
Query: 21 RGIVRLDRKTMRELGISPGDVVEIIGTKNTA--AIAWPAYPEDEGLGI------------ 66
RG V+ + TM +LG+ GD+V I TKN A + AYPE +
Sbjct: 224 RGFVKSE--TMSKLGVFSGDIVSI-KTKNGAERVLRLFAYPEPNTVKYDVVYVSPILYHN 280
Query: 67 -------IRMDGTIRKNAGVGLGDEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHER 119
+ +G K+ G L D V EV+ A+ L PT R F H
Sbjct: 281 IGDKEIEVTPNGETHKSVGEAL-DSVLEAAEEVKLAR--VLGPTTT---DRTFQTAYHAG 334
Query: 120 L------VGRPVVRGDYIKVG-------VLGQE-----LTFVVTATQPSGVVQITEFTDF 161
L V R V GD I + +G++ + A +P V + T
Sbjct: 335 LQAYFKPVKRAVRVGDLIPIPFDSILARTIGEDPEMSHIPLEALAVKPDSVAWF-QVTSL 393
Query: 162 NISEKPVKE---VEKRMT--------------TGVTYEDIGGLKDV---------IEKIR 195
N SE P + V+ T T V + + GL + +KIR
Sbjct: 394 NGSEDPASKQYLVDSSQTKLIEGGTTSSAVIPTSVPWREYLGLDTLPKFGSEFAYADKIR 453
Query: 196 EMIELP---LKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEI 252
++++ L H +L + + K G GK+ + ++VA + I+ +
Sbjct: 454 NLVQISTSALSHAKLNTSVLLHSAKR-------GVGKSTVLRSVAAQCGISVFEISCFGL 506
Query: 253 MSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDG 312
+ ++ LR A +P ++ + +++IA K+S+ G+ ++ +V++L+ ++
Sbjct: 507 IGDNEAQTLGTLRAKLDRAYGCSPCVVVLQHLESIA-KKSDQDGK-DEGIVSKLVDVLAD 564
Query: 313 LKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDF 372
G V++ +N PD I A+R RF EIE+GVP EP
Sbjct: 565 YSGHG-VLLAATSNDPDKISEAIR--SRFQFEIEIGVPS-----------------EPQR 604
Query: 373 RKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKL 432
R+ I + G I A P L+ D
Sbjct: 605 RQ-----IFSHLTKSGPGGDSIRNA------------PISLRS--------------DVS 633
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDEL-------- 484
++ LA + G DL A+ + + A+ RL K+ E P LD+L
Sbjct: 634 VENLALQSAGLTPPDLTAIVQTTRLRAIDRL---NKLTKER---PIATLDDLLTLSHGTL 687
Query: 485 KVTRRDFYEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFK 543
++T DF +A+ + +PNV WDD+GG+E VK+++ + +E PLKYP F
Sbjct: 688 QLTPSDFDDAIADARQKYSDSIGAPRIPNVGWDDVGGMEGVKKDILDTIETPLKYPHWFS 747
Query: 544 AYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFR 603
G+ GIL YGPPGTGKTLLAKA+AT NF +V+GPE+L+ ++GESE N+R +F+
Sbjct: 748 D-GVKKRSGILFYGPPGTGKTLLAKAIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQ 806
Query: 604 KARQAAPTVIFIDEIDAIAPRRGT--DVNRVTDRIINQLLTEMDGIQE--NAGVVVIAAT 659
KAR A P V+F DE+D++AP+R D V DRI++QLL E+DG+ GV V+ AT
Sbjct: 807 KARDAKPCVVFFDELDSVAPQRRNQGDSGGVMDRIVSQLLAELDGMSTAGGEGVFVVGAT 866
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFE-IFKVHTRGMPLADDVDLKELARRTE-G 717
NRPD+LD ALLRPGRFD+++ + D + + I + TR LA DV L+ +++R
Sbjct: 867 NRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAISKRCPFT 926
Query: 718 YTGADIAAVCREAAMIAMRRA----------LEKGIIKPGMKASEIRRL----------- 756
+TGAD A+C +A + AM R L K + G + IR
Sbjct: 927 FTGADFYALCSDAMLNAMTRTANEVDAKIKLLNKNREEAGEEPVSIRWWFDHEATKSDIE 986
Query: 757 AKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+V +DFE+A ++ PSVS E +++Y K+++QF+
Sbjct: 987 VEVAQQDFEKAKDELSPSVSAEELQHYLKLRQQFE 1021
>sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|1127034|dbj|BAA09824.1| (D63673)
peroxisome assembly factor-2 [Rattus norvegicus]
>gi|1586820|prf||2204387A peroxisome assembly factor 2
[Rattus norvegicus]
Length = 978
Score = 273 bits (690), Expect = 7e-72
Identities = 193/580 (33%), Positives = 299/580 (51%), Gaps = 78/580 (13%)
Query: 219 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAI 278
VLL GPPG+GKT A + + + + + + E +L+ F A P +
Sbjct: 466 VLLQGPPGSGKTTAVTAACSRLGLHLLKVPCSSLCADSSRTVETKLQTTFSRARRCRPVV 525
Query: 279 IFIDEIDAIAPKRSEVTGEVEKRVVAQLLALM---DGLKSRGKVIVIGATNRPDAIDPAL 335
+ + +D + R + GE + RVVA L L+ D L ++V+ T+R + +
Sbjct: 526 LLLTALDLLGRDRDGL-GE-DARVVATLRHLLLDEDPLSRCPPLMVVATTSRVQDLPTDV 583
Query: 336 RRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIID 395
R F E+EV P+ + ++ VL+ L G
Sbjct: 584 RTA--FPHELEV-------------------PVLSESQRLSVLQALTAHLPLG------- 615
Query: 396 KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
+EVN L +LA GFV DL AL A
Sbjct: 616 ---QEVN------------------------------LSQLARRCAGFVVGDLYALLTHA 642
Query: 456 AMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV-LIEVPNVH 514
+ AA R+ G + E + DF +AL ++ + + V ++P+V
Sbjct: 643 SRAACTRIKAAG-LAMSEEDEGELCAAGFPLLAEDFGQALDQLQTAHSQAVGAPKIPSVS 701
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
W D+GGL+DVK+E+ E ++ PL++PE + G+ G+LL+GPPGTGKTLLAKAVATE
Sbjct: 702 WHDVGGLQDVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAKAVATEC 759
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVNRV 632
F++V+GPE+++ +VG+SE+N+RE+F +AR AAP +IF DE+D++AP RG D V
Sbjct: 760 SLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGV 819
Query: 633 TDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA-RFE 691
DR+++QLL E+DG+ V VI ATNRPD+LDPALLRPGRFD+L+ V A +++A +
Sbjct: 820 MDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLR 879
Query: 692 IFKVHTRGMPLADDVDLKE-LARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKA 750
+ TR L V L L TGAD+ ++C +A M A++R + ++ G++
Sbjct: 880 VLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVRD--LEEGLEP 937
Query: 751 SEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
L +TM+D +A ++ PSVS++ + Y++IQ +F
Sbjct: 938 RSSALL--LTMEDLLQAAARLQPSVSEQELLRYKRIQRKF 975
Score = 194 bits (487), Expect = 4e-48
Identities = 107/203 (52%), Positives = 140/203 (68%), Gaps = 5/203 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V++ D+GGL+DV ++I E I+LPL+HPEL LG+ G+LL+GPPGTGKTLLAKAVA
Sbjct: 700 VSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAKAVAT 757
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK--RSEVTG 296
E + F+++ GPE+++ Y G+SEE +REVF A AP IIF DE+D++AP RS +G
Sbjct: 758 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 817
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQGR 355
V RVV+QLLA +DGL S V VIGATNRPD +DPAL RPGRFD+ + VG DR +
Sbjct: 818 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQ 877
Query: 356 KEILQIHTRGMPIEPDFRKDDVL 378
+L TR +E +VL
Sbjct: 878 LRVLSAITRKFKLEASVSLMNVL 900
Score = 74.5 bits (180), Expect = 4e-12
Identities = 67/263 (25%), Positives = 114/263 (42%), Gaps = 14/263 (5%)
Query: 515 WDDIG--GLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
WD + GLE + EL ++ L+ +T +LL GPPG+GKT A +
Sbjct: 430 WDSLSPPGLEALVNELCAVLKPHLQPGGTL----LTGTSCVLLQGPPGSGKTTAVTAACS 485
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDV 629
+ + V + + E ++ F +AR+ P V+ + +D + R G D
Sbjct: 486 RLGLHLLKVPCSSLCADSSRTVETKLQTTFSRARRCRPVVLLLTALDLLGRDRDGLGEDA 545
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
V + LL + D + ++V+A T+R L P +R F + VP E R
Sbjct: 546 RVVAT--LRHLLLDEDPLSRCPPLMVVATTSRVQDL-PTDVRTA-FPHELEVPVLSESQR 601
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMK 749
+ + T +PL +V+L +LARR G+ D+ A+ A+ A R G+
Sbjct: 602 LSVLQALTAHLPLGQEVNLSQLARRCAGFVVGDLYALLTHASRAACTRIKAAGLAMSEED 661
Query: 750 ASEIRRLA-KVTMKDFEEALRKI 771
E+ + +DF +AL ++
Sbjct: 662 EGELCAAGFPLLAEDFGQALDQL 684
>gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 585
Score = 272 bits (689), Expect = 9e-72
Identities = 198/608 (32%), Positives = 310/608 (50%), Gaps = 94/608 (15%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
+ ++++ LKDV ++ E+ ++ + GV+L+GPPGTGKT +AKA+AN
Sbjct: 65 IRWDEVYDLKDVKMRLEEIAKIVQEGRAY----------GVILFGPPGTGKTTIAKALAN 114
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
+ + + +I+SK+YGESE L F + E N PA++FIDE+D++A R EV
Sbjct: 115 KLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAVVFIDELDSLAMSRQSDLHEV 174
Query: 299 EKRVVAQLLALMDGLKSRG-KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKE 357
R+V +L + L + +VI+IGATN P ID A
Sbjct: 175 THRLVNIMLMRLQDLHDKNLRVIIIGATNVPQEIDEA----------------------- 211
Query: 358 ILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKID 417
F R G+F ++I A+ + KS+EE +K+ D
Sbjct: 212 --------------------------FLRPGRFDEVIYVALPD-EKSREEIWKGYIKRED 244
Query: 418 AELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIP 477
ID L LA + F AD+ +A + ++ L E DF E
Sbjct: 245 -----------IDYSL--LAKKSERFSPADIKNVA-DKVISKNNSLKTE---DFLREIEN 287
Query: 478 REVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLK 537
+ +L + F + E S L +PN+ W+D+G LE+VK+ +RE++ P+
Sbjct: 288 YKPSIQLSTIIK-FENIARKYERSKLIIKTYGIPNISWNDLGDLEEVKRIIRESIVLPIT 346
Query: 538 YPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKN 597
E + GI P KGILLYGPPGTGKT +AKA+A + + NFI + G E+ ++ K
Sbjct: 347 NKEFAEKLGIYPVKGILLYGPPGTGKTSIAKALANDLRFNFIELSGEEVSGAGPLDAPKI 406
Query: 598 IREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIA 657
I E F A AP +IFIDEID IA R T+ R + +LL +MDG++E V+V+
Sbjct: 407 IAEKFYIALDNAPAIIFIDEIDMIARNRMTNEWR---NALTELLRQMDGLREIHNVIVVG 463
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEG 717
ATNRP LDPA+LR GRFD++I VP PD+ R +I +V + + + ++ + ++A TE
Sbjct: 464 ATNRPWDLDPAILRAGRFDKIIYVPPPDKDGREKILQVLIKDLIINRNI-ISKVAELTEN 522
Query: 718 YTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
YT AD+ V E +++ ++K + +R +V ++DF + L+++ S+ +
Sbjct: 523 YTPADLKLVVEE---------VKRNLLKEASISGNLR--TEVKLEDFMDVLKRVKASLDR 571
Query: 778 ETMEYYRK 785
+T+ Y K
Sbjct: 572 QTLIMYEK 579
Score = 166 bits (416), Expect = 9e-40
Identities = 100/292 (34%), Positives = 158/292 (53%), Gaps = 37/292 (12%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
R+ I +PN+ WD++ L+DVK L E K + +AYG+ +L+GPPGTGK
Sbjct: 56 RKPKIHIPNIRWDEVYDLKDVKMRLEEIA----KIVQEGRAYGV------ILFGPPGTGK 105
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
T +AKA+A + + +R +ILSKW GESE + F + P V+FIDE+D++A
Sbjct: 106 TTIAKALANKLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAVVFIDELDSLAM 165
Query: 624 RRGTDVNRVTDRIINQLLTEMDGIQE-NAGVVVIAATNRPDILDPALLRPGRFDRLILVP 682
R +D++ VT R++N +L + + + N V++I ATN P +D A LRPGRFD +I V
Sbjct: 166 SRQSDLHEVTHRLVNIMLMRLQDLHDKNLRVIIIGATNVPQEIDEAFLRPGRFDEVIYVA 225
Query: 683 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKG 742
PDEK+R EI+K G +D+D LA+++E ++ ADI + +K
Sbjct: 226 LPDEKSREEIWK----GYIKREDIDYSLLAKKSERFSPADI------------KNVADKV 269
Query: 743 IIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFKQAR 794
I K +E DF + PS+ T+ + I ++++++
Sbjct: 270 ISKNNSLKTE----------DFLREIENYKPSIQLSTIIKFENIARKYERSK 311
>sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|7492793|pir||T37816 probable peroxin-6, AAA
family atpase - fission yeast (Schizosaccharomyces
pombe) >gi|2370473|emb|CAB11501.1| (Z98849) putative
peroxin-6, AAA family atpase [Schizosaccharomyces pombe]
Length = 948
Score = 272 bits (687), Expect = 1e-71
Identities = 186/591 (31%), Positives = 302/591 (50%), Gaps = 89/591 (15%)
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL+G P TGKT + VA+ +A I+ E E +L + ++ AII
Sbjct: 426 LLHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFVQNVVKSPCAII 485
Query: 280 FIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKS-RGKVIVIGATNRPDAIDPALRRP 338
F+ ++D ++ E + + LL+ +D +KS +G+ IVIG + + I +
Sbjct: 486 FVKDLDVLSISSDEGNIVPGSKSIQILLSKIDLVKSPQGRYIVIGTCHSIEKIPYEILSE 545
Query: 339 GRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAI 398
F E++ + R E+L+I+ + IIDK I
Sbjct: 546 SFF--ELKFSELEMDERLELLKIYANNV--------------------------IIDKRI 577
Query: 399 EEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMA 458
L ++A T+ +L L A
Sbjct: 578 S---------------------------------LKDVALKTNSMSFGELECLPDHMTKA 604
Query: 459 ALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDI 518
A+ R+ R G ++ ++I +L +T +D ++ + + VP V+WDDI
Sbjct: 605 AVDRIKRTG---YDNDSI---ILSGPIITEQDVDVSINRIRKEK-SNTIFTVPKVNWDDI 657
Query: 519 GGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANF 578
GGLE+ K LR+ ++ PL++PE F + G+ P G+LLYGPPGTGKTLLAKAVATE F
Sbjct: 658 GGLEEAKTVLRDTLQLPLQFPELF-SQGLKPRSGVLLYGPPGTGKTLLAKAVATELSLEF 716
Query: 579 IAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG--TDVNRVTDRI 636
++++GPE+L+ +VGESE N+R +F KAR ++P VIF DE+D+IAP RG +D V DR+
Sbjct: 717 VSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDRV 776
Query: 637 INQLLTEMDGIQE--NAGVVVIAATNRPDILDPALLRPGRFDRLILVPA-PDEKARFEIF 693
++QLL E+D I + N V VI ATNRPD+LDP+LLRPGRFD+L+ + E+++ +
Sbjct: 777 VSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASML 836
Query: 694 KVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASE 752
+ T+ L + +DL E+A+ +TGAD+ A+C +A + A++R + + ++
Sbjct: 837 RALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEIDLLIQASGTD 896
Query: 753 IRR-------------LAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ ++T +DF +L+K+ PS+S++ + Y ++ QF
Sbjct: 897 LSTEEFFKRNENQDSLELRITKEDFLTSLKKLRPSISEQELHRYEMVRHQF 947
Score = 188 bits (472), Expect = 2e-46
Identities = 104/250 (41%), Positives = 156/250 (61%), Gaps = 6/250 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V ++DIGGL++ +R+ ++LPL+ PELF + G++P GVLLYGPPGTGKTLLAKAVA
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVAT 710
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTG 296
E + F++I GPE+++ Y GESE +R VF++A ++P +IF DE+D+IAP R S +G
Sbjct: 711 ELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSG 770
Query: 297 EVEKRVVAQLLALMDGL-KSRGK-VIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQ 353
V RVV+QLLA +D + K K V VIGATNRPD +DP+L RPGRFD+ + +G+ +
Sbjct: 771 NVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEE 830
Query: 354 GRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVL 413
+ +L+ T+ ++ +++ K + A+ K K EI ++
Sbjct: 831 SKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEIDLLI 890
Query: 414 KKIDAELYDE 423
+ +L E
Sbjct: 891 QASGTDLSTE 900
>gi|11499558 26S protease regulatory subunit 4 [Archaeoglobus fulgidus]
>gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE
REGULATORY SUBUNIT HOMOLOG AF1976
>gi|7435736|pir||G69496 ATP-dependent 26S proteinase
regulatory subunit 4 homolog - Archaeoglobus fulgidus
>gi|2648566|gb|AAB89280.1| (AE000967) 26S protease
regulatory subunit 4 [Archaeoglobus fulgidus]
Length = 398
Score = 272 bits (687), Expect = 1e-71
Identities = 144/266 (54%), Positives = 180/266 (67%), Gaps = 20/266 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P V ++DIGGL+ +E+REAVE PL PE F GI PPKG+LLYGPPGTGKTLLAK
Sbjct: 134 EKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAK 193
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA +++A FI V G E + K++GE + +RE+F+ A++ AP++IFIDE+DAIA RR
Sbjct: 194 AVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNS 253
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
T +R R + QLL E+DG V VI ATNR DILDPA+LRPGRFDR+I VP P
Sbjct: 254 DTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPT 313
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
+ R +IFK+HTR M LA+DVD KELAR TEG +GADI A+C EA M A+R
Sbjct: 314 FEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIR--------- 364
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKI 771
AKVTM DF +A+ K+
Sbjct: 365 --------EERAKVTMLDFTKAIEKV 382
Score = 230 bits (580), Expect = 5e-59
Identities = 126/225 (56%), Positives = 157/225 (69%), Gaps = 13/225 (5%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F + EKP V+YEDIGGL IE+IRE +ELPL PELF ++GIEPPKGVL
Sbjct: 130 FEVEEKPE----------VSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVL 179
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
LYGPPGTGKTLLAKAVAN+ A FI + G E + KY GE +REVF+ A+E AP+IIF
Sbjct: 180 LYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIF 239
Query: 281 IDEIDAIAPKR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
IDE+DAIA +R S+ +G+ E +R + QLLA +DG RG V VIGATNR D +DPA+ R
Sbjct: 240 IDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILR 299
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILE 382
PGRFDR IEV +P +GR +I +IHTR M + D ++ +I E
Sbjct: 300 PGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITE 344
>gb|AAG29873.1| (AF313486) valosin-containing protein [Homo sapiens]
Length = 307
Score = 272 bits (687), Expect = 1e-71
Identities = 144/288 (50%), Positives = 197/288 (68%), Gaps = 7/288 (2%)
Query: 67 IRMDGTIRKNAGVGLGDEVTVRKA-EVREAKKVTLAPTEPIR---FGRDFVEWLHERLVG 122
IRM+ +R N V LGD ++++ +V+ K++ + P + G F +L +
Sbjct: 20 IRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLE 79
Query: 123 --RPVVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVK-EVEKRMTTGV 179
RP+ +GD V + + F V T PS + T + +P+K E E+ V
Sbjct: 80 AYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 139
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
Y+DIGG + + +I+EM+ELPL+HP LF+ +G++PP+G+LLYGPPGTGKTL+A+AVANE
Sbjct: 140 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 199
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVE 299
A+F INGPEIMSK GESE LR+ F+EAE+NAPAIIFIDE+DAIAPKR + GEVE
Sbjct: 200 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 259
Query: 300 KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEV 347
+R+V+QLL LMDGLK R VIV+ ATNRP++IDPALRR GRFDRE+++
Sbjct: 260 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 307
Score = 196 bits (494), Expect = 6e-49
Identities = 95/165 (57%), Positives = 124/165 (74%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V +DDIGG +++E VE PL++P FKA G+ PP+GILLYGPPGTGKTL+A+AVA
Sbjct: 139 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 198
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRV 632
E+ A F + GPEI+SK GESE N+R+ F +A + AP +IFIDE+DAIAP+R V
Sbjct: 199 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 258
Query: 633 TDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDR 677
RI++QLLT MDG+++ A V+V+AATNRP+ +DPAL R GRFDR
Sbjct: 259 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 303
>dbj|BAA24931.1| (D89660) peroxisome assembly factor-2 [Rattus norvegicus]
Length = 978
Score = 270 bits (682), Expect = 6e-71
Identities = 192/580 (33%), Positives = 298/580 (51%), Gaps = 78/580 (13%)
Query: 219 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAI 278
VLL GPPG+GKT A + + + + + + E +L+ F A P +
Sbjct: 466 VLLQGPPGSGKTTAVTAACSRLGLHLLKVPCSSLCADSSRTVETKLQTTFSRARRCRPVV 525
Query: 279 IFIDEIDAIAPKRSEVTGEVEKRVVAQLLALM---DGLKSRGKVIVIGATNRPDAIDPAL 335
+ + +D + R + GE + VVA L L+ D L ++V+ T+R + +
Sbjct: 526 LLLTALDLLGRDRDGL-GE-DACVVATLRHLLLDEDPLSRCPPLMVVATTSRVQDLPTDV 583
Query: 336 RRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIID 395
R F E+EV P+ + ++ VL+ L G
Sbjct: 584 RTA--FPHELEV-------------------PVLSESQRLSVLQALTAHLPLG------- 615
Query: 396 KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
+EVN L +LA GFV DL AL A
Sbjct: 616 ---QEVN------------------------------LSQLARRCAGFVVGDLYALLTHA 642
Query: 456 AMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV-LIEVPNVH 514
+ AA R+ G + E + DF +AL ++ + + V ++P+V
Sbjct: 643 SRAACTRIKAAG-LAMSEEDEGELCAAGFPLLAEDFGQALDQLQTAHSQAVGAPKIPSVS 701
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
W D+GGL+DVK+E+ E ++ PL++PE + G+ G+LL+GPPGTGKTLLAKAVATE
Sbjct: 702 WHDVGGLQDVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAKAVATEC 759
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVNRV 632
F++V+GPE+++ +VG+SE+N+RE+F +AR AAP +IF DE+D++AP RG D V
Sbjct: 760 SLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGV 819
Query: 633 TDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA-RFE 691
DR+++QLL E+DG+ V VI ATNRPD+LDPALLRPGRFD+L+ V A +++A +
Sbjct: 820 MDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLR 879
Query: 692 IFKVHTRGMPLADDVDLKE-LARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKA 750
+ TR L V L L TGAD+ ++C +A M A++R + ++ G++
Sbjct: 880 VLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVRD--LEEGLEP 937
Query: 751 SEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
L +TM+D +A ++ PSVS++ + Y++IQ +F
Sbjct: 938 RSSALL--LTMEDLLQAAARLQPSVSEQELLRYKRIQRKF 975
Score = 194 bits (487), Expect = 4e-48
Identities = 107/203 (52%), Positives = 140/203 (68%), Gaps = 5/203 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V++ D+GGL+DV ++I E I+LPL+HPEL LG+ G+LL+GPPGTGKTLLAKAVA
Sbjct: 700 VSWHDVGGLQDVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAKAVAT 757
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK--RSEVTG 296
E + F+++ GPE+++ Y G+SEE +REVF A AP IIF DE+D++AP RS +G
Sbjct: 758 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 817
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQGR 355
V RVV+QLLA +DGL S V VIGATNRPD +DPAL RPGRFD+ + VG DR +
Sbjct: 818 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQ 877
Query: 356 KEILQIHTRGMPIEPDFRKDDVL 378
+L TR +E +VL
Sbjct: 878 LRVLSAITRKFKLEASVSLMNVL 900
Score = 74.9 bits (181), Expect = 3e-12
Identities = 65/261 (24%), Positives = 113/261 (42%), Gaps = 10/261 (3%)
Query: 515 WDDIG--GLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
WD + GLE + EL ++ L+ +T +LL GPPG+GKT A +
Sbjct: 430 WDSLSPPGLEALVNELCAVLKPHLQPGGTL----LTGTSCVLLQGPPGSGKTTAVTAACS 485
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA-PRRGTDVNR 631
+ + V + + E ++ F +AR+ P V+ + +D + R G +
Sbjct: 486 RLGLHLLKVPCSSLCADSSRTVETKLQTTFSRARRCRPVVLLLTALDLLGRDRDGLGEDA 545
Query: 632 VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 691
+ LL + D + ++V+A T+R L P +R F + VP E R
Sbjct: 546 CVVATLRHLLLDEDPLSRCPPLMVVATTSRVQDL-PTDVRTA-FPHELEVPVLSESQRLS 603
Query: 692 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
+ + T +PL +V+L +LARR G+ D+ A+ A+ A R G+
Sbjct: 604 VLQALTAHLPLGQEVNLSQLARRCAGFVVGDLYALLTHASRAACTRIKAAGLAMSEEDEG 663
Query: 752 EIRRLA-KVTMKDFEEALRKI 771
E+ + +DF +AL ++
Sbjct: 664 ELCAAGFPLLAEDFGQALDQL 684
>sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH728
>gi|7435737|pir||C69197 ATP-dependent 26S proteinase
regulatory subunit 4 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621817|gb|AAB85233.1| (AE000852) ATP-dependent 26S
protease regulatory subunit 4 [Methanobacterium
thermoautotrophicum]
Length = 410
Score = 268 bits (679), Expect = 1e-70
Identities = 174/441 (39%), Positives = 250/441 (56%), Gaps = 62/441 (14%)
Query: 376 DVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLK-KIDAELYDEVKTRLIDKLLD 434
+VLK +ED K+E + K EE +K+K + ++ K + D L + +TRL D+ +
Sbjct: 7 NVLKKIEDLKKEVRMLK------EENSKTKRNLMWKIRKLEKDKLLIENERTRL-DREVK 59
Query: 435 ELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYE- 493
L F L +A + ++ + ++ ++ T P V++ + R E
Sbjct: 60 SLRGEIERFRTPPLV-------IATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEP 112
Query: 494 -----------ALKMVEPSALREVLI-----EVPNVHWDDIGGLEDVKQELREAVEWPLK 537
++ V PS V+ E P+V ++ IGGLE+ +E++E VE PLK
Sbjct: 113 GARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLK 172
Query: 538 YPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKN 597
PE F+ GI PPKG+LLYGPPGTGKTLLAKAVA E+ A FI + E + K++GE +
Sbjct: 173 KPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARL 232
Query: 598 IREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVV 654
+R +F A++ +P++IFIDEIDA+A +R T +R R + QLL E+DG + V
Sbjct: 233 VRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVG 292
Query: 655 VIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARR 714
++AATNRPDILDPALLRPGRFDR I VP P+E R EI K+HT GM LA++VD++ LAR
Sbjct: 293 IVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARI 352
Query: 715 TEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPS 774
T+G +GAD+ A+C EA M A+R + +VTM DF +A+ KI
Sbjct: 353 TDGASGADLKAICTEAGMFAIRDERD-----------------EVTMADFMDAVDKI-MG 394
Query: 775 VSKETMEYYRKIQEQFKQARG 795
V KE E++KQ G
Sbjct: 395 VEKE---------EEYKQETG 406
Score = 237 bits (598), Expect = 4e-61
Identities = 127/231 (54%), Positives = 161/231 (68%), Gaps = 15/231 (6%)
Query: 141 TFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIEL 200
TF + PS + T + EKP V+YE IGGL++ + +++E +EL
Sbjct: 122 TFSIVDVLPSEKDPVV--TGMEVEEKP----------DVSYEQIGGLEEQVREVKETVEL 169
Query: 201 PLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGES 260
PLK PELFEK+GIEPPKGVLLYGPPGTGKTLLAKAVA+E NA FI I E + KY GE
Sbjct: 170 PLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEG 229
Query: 261 EERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGEVE-KRVVAQLLALMDGLKSRG 317
+R VF+ A+E +P+IIFIDEIDA+A KR S +G+ E +R + QLLA +DG +SRG
Sbjct: 230 ARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRG 289
Query: 318 KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPI 368
V ++ ATNRPD +DPAL RPGRFDR IEV +P+ GR+EIL+IHT GM +
Sbjct: 290 NVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMAL 340
>sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROXIN-6)
>gi|396147|emb|CAA80278.1| (Z22556) PAS5 [Pichia
pastoris]
Length = 1165
Score = 267 bits (675), Expect = 4e-70
Identities = 186/595 (31%), Positives = 309/595 (51%), Gaps = 81/595 (13%)
Query: 228 GKTLLAKAVANEANAYFIAINGPEIM-----SKYYGESEERLREVFKEAEENAPAIIFID 282
GK+LL ++A E + + I+G E++ SK G +L V E P I+FI
Sbjct: 575 GKSLLVHSLALECGVHLVEIDGYEVLNPSSESKTIGTIRGKLDRV---VEGCTPLIVFIK 631
Query: 283 EIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFD 342
I+A+ K + + + + ++ L+D ++ V+ + +TN D + LR +F
Sbjct: 632 HIEALTKKSEQ---QQKDSLAVKINELIDEYTAKPGVLFVASTNDSDNLSDELR--AKFK 686
Query: 343 REIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVN 402
EI +GVP Q R I + DF + K+ E RE F D ++ ++
Sbjct: 687 FEIVLGVPSEQERTLIFKYLI-------DFDQKTTPKVTEG-TRELSFAPRNDLSLSSLS 738
Query: 403 KSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRR 462
P+ L I + KT +D++ +LA+ ++
Sbjct: 739 LQSAGLTPRDLISI----VENAKTLAVDRV----------------ESLAKHHNVSFENM 778
Query: 463 LIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLE 522
+ G + P +V + R F +++ +PNV W+D+GGL+
Sbjct: 779 VYSSGGY---IKFTPEDVEKSINTARNKFSDSIGAPR----------IPNVKWEDVGGLD 825
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
VK E+ + ++ P+K+PE F + GI GIL YGPPGTGKTLLAKA+AT NF +V+
Sbjct: 826 VVKDEILDTIDMPMKHPELF-SNGIKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVK 884
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVNRVTDRIINQL 640
GPE+L+ ++GESE N+R++F++AR A P V+F DE+D++AP+RG D V DRI++QL
Sbjct: 885 GPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSEGVMDRIVSQL 944
Query: 641 LTEMDGI---QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIFKVH 696
L E+DG+ GV V+ ATNRPD+LD ALLRPGRFD+++ + D + + +I +
Sbjct: 945 LAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEAL 1004
Query: 697 TRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMIAMRR---ALEKGIIKPGMKASE 752
+R L VDL ++A +TGAD A+C +A + AM R +++ I + + E
Sbjct: 1005 SRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEKIKRYNEELPE 1064
Query: 753 IRRLAK----------------VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+++ VT++DF+++ +++ PSVS E +++Y ++++ F+
Sbjct: 1065 KSQVSTRWWFDNVATKEDIDVLVTLEDFDKSRKELVPSVSAEELDHYLRVRQNFE 1119
Score = 178 bits (446), Expect = 3e-43
Identities = 102/266 (38%), Positives = 153/266 (57%), Gaps = 18/266 (6%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V +ED+GGL V ++I + I++P+KHPELF GI+ G+L YGPPGTGKTLLAKA+A
Sbjct: 816 VKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIAT 874
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
F ++ GPE+++ Y GESE +R+VF+ A + P ++F DE+D++APKR +
Sbjct: 875 NFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSE 934
Query: 297 EVEKRVVAQLLALMDGLK---SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD-R 352
V R+V+QLLA +DG+ V V+GATNRPD +D AL RPGRFD+ + +GV D
Sbjct: 935 GVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTH 994
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKI-----------IDKAIEEV 401
+ + +I++ +R + P D V + F + I ++E
Sbjct: 995 EKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEK 1054
Query: 402 NKSKEEEIPQVLKKIDAELYDEVKTR 427
K EE+P+ + +D V T+
Sbjct: 1055 IKRYNEELPEKSQVSTRWWFDNVATK 1080
>pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pastoris)
Length = 1165
Score = 267 bits (675), Expect = 4e-70
Identities = 186/595 (31%), Positives = 309/595 (51%), Gaps = 81/595 (13%)
Query: 228 GKTLLAKAVANEANAYFIAINGPEIM-----SKYYGESEERLREVFKEAEENAPAIIFID 282
GK+LL ++A E + + I+G E++ SK G +L V E P I+FI
Sbjct: 575 GKSLLVHSLALECGVHLVEIDGYEVLNPSSESKTIGTIRGKLDRV---VEGCTPLIVFIK 631
Query: 283 EIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFD 342
I+A+ K + + + + ++ L+D ++ V+ + +TN D + LR +F
Sbjct: 632 HIEALTKKSEQ---QQKDSLAVKINELIDEYTAKPGVLFVASTNDSDNLSDELR--AKFK 686
Query: 343 REIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVN 402
EI +GVP Q R I + DF + K+ E RE F D ++ ++
Sbjct: 687 FEIVLGVPSEQERTLIFKYLI-------DFDQKTTPKVTEG-TRELSFAPRNDLSLSSLS 738
Query: 403 KSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRR 462
P+ L I + KT +D++ +LA+ ++
Sbjct: 739 LQSAGLTPRDLISI----VENAKTLAVDRV----------------ESLAKHHNVSFENM 778
Query: 463 LIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLE 522
+ G + P +V + R F +++ +PNV W+D+GGL+
Sbjct: 779 VYSSGGY---IKFTPEDVEKSINTARNKFSDSIGAPR----------IPNVKWEDVGGLD 825
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
VK E+ + ++ P+K+PE F + GI GIL YGPPGTGKTLLAKA+AT NF +V+
Sbjct: 826 VVKDEILDTIDMPMKHPELF-SNGIKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVK 884
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVNRVTDRIINQL 640
GPE+L+ ++GESE N+R++F++AR A P V+F DE+D++AP+RG D V DRI++QL
Sbjct: 885 GPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQL 944
Query: 641 LTEMDGI---QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIFKVH 696
L E+DG+ GV V+ ATNRPD+LD ALLRPGRFD+++ + D + + +I +
Sbjct: 945 LAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEAL 1004
Query: 697 TRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMIAMRR---ALEKGIIKPGMKASE 752
+R L VDL ++A +TGAD A+C +A + AM R +++ I + + E
Sbjct: 1005 SRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEKIKRYNEELPE 1064
Query: 753 IRRLAK----------------VTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+++ VT++DF+++ +++ PSVS E +++Y ++++ F+
Sbjct: 1065 KSQVSTRWWFDNVATKEDIDVLVTLEDFDKSRKELVPSVSAEELDHYLRVRQNFE 1119
Score = 181 bits (454), Expect = 3e-44
Identities = 103/266 (38%), Positives = 154/266 (57%), Gaps = 18/266 (6%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V +ED+GGL V ++I + I++P+KHPELF GI+ G+L YGPPGTGKTLLAKA+A
Sbjct: 816 VKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIAT 874
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
F ++ GPE+++ Y GESE +R+VF+ A + P ++F DE+D++APKR +G
Sbjct: 875 NFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDSG 934
Query: 297 EVEKRVVAQLLALMDGLK---SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD-R 352
V R+V+QLLA +DG+ V V+GATNRPD +D AL RPGRFD+ + +GV D
Sbjct: 935 GVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTH 994
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKI-----------IDKAIEEV 401
+ + +I++ +R + P D V + F + I ++E
Sbjct: 995 EKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAMTRIANTVDEK 1054
Query: 402 NKSKEEEIPQVLKKIDAELYDEVKTR 427
K EE+P+ + +D V T+
Sbjct: 1055 IKRYNEELPEKSQVSTRWWFDNVATK 1080
>gb|AAD25809.1|AC006550_17 (AC006550) Belongs to PF|00004 ATPases associated with various
cellular activities. [Arabidopsis thaliana]
Length = 983
Score = 266 bits (674), Expect = 5e-70
Identities = 195/644 (30%), Positives = 318/644 (49%), Gaps = 89/644 (13%)
Query: 188 KDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAI 247
++ + + ++ PL L KL + VLL+G PG GK + K VA + +
Sbjct: 385 EETVNILASVLSPPLCPSALASKLRV----AVLLHGIPGCGKRTVVKYVARRLGLHVVEF 440
Query: 248 NGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRV----- 302
+ +++ ++ L + F A +P I+ + D S+ G + RV
Sbjct: 441 SCHSLLASSERKTSTALAQTFNMARRYSPTILLLRHFDVFKNLGSQ-DGSLGDRVGVSFE 499
Query: 303 VAQLLALMDGLKSRG-----------------------KVIVIGATNRPDAIDPALRRPG 339
+A ++ + S G +V++I + + I P +RR
Sbjct: 500 IASVIRELTEPVSNGDSSMEEKSNSNFSENEVGKFRGHQVLLIASAESTEGISPTIRRC- 558
Query: 340 RFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF--KREGKFTKIIDKA 397
F EI +G + + R E+L +G+ L + E K + + +
Sbjct: 559 -FSHEIRMGSLNDEQRSEMLSQSLQGV--------SQFLNVCEYNAPKLQISSDEFMKGL 609
Query: 398 IEEVNKSKEEEIPQVLKKIDAELY--DEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
+ + + ++ ++ A LY E +T+ I+ L D+L V
Sbjct: 610 VGQTSGFLPRDLQALVADAGANLYISQESETKKINSLSDDLHGVD--------------- 654
Query: 456 AMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL---KMVEPSALREVLIEVPN 512
+ + +ID E + + DF +AL K SAL +VPN
Sbjct: 655 -------IHQASQIDNSTEKL---------TAKEDFTKALDRSKKRNASALGAP--KVPN 696
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V WDD+GGLEDVK + + V+ PL + + F + G+ G+LLYGPPGTGKTLLAKAVAT
Sbjct: 697 VKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 755
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVN 630
E NF++V+GPE+++ ++GESEKN+R+IF KAR A P VIF DE+D++AP RG D
Sbjct: 756 ECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDSG 815
Query: 631 RVTDRIINQLLTEMDGIQENA-GVVVIAATNRPDILDPALLRPGRFDRLILVPA-PDEKA 688
V DR+++Q+L E+DG+ +++ + +I A+NRPD++DPALLRPGRFD+L+ V D
Sbjct: 816 GVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASY 875
Query: 689 RFEIFKVHTRGMPLADDVDLKELARRTEG-YTGADIAAVCREAAMIAMRRALEKGIIKPG 747
R + K TR L++DV L +A++ +TGAD+ A+C +A A +R + K
Sbjct: 876 RERVLKALTRKFKLSEDVSLYSVAKKCPSTFTGADMYALCADAWFQAAKRKVSKSDSGDM 935
Query: 748 MKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+ V DF +A+ ++ PS+S ++ Y +++QF+
Sbjct: 936 PTEEDDPDSVVVEYVDFIKAMDQLSPSLSITELKKYEMLRDQFQ 979
Score = 184 bits (463), Expect = 3e-45
Identities = 99/205 (48%), Positives = 138/205 (67%), Gaps = 5/205 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V ++D+GGL+DV I + ++LPL H +LF G+ GVLLYGPPGTGKTLLAKAVA
Sbjct: 697 VKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAVAT 755
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTG 296
E + F+++ GPE+++ Y GESE+ +R++F++A P +IF DE+D++AP R S +G
Sbjct: 756 ECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDSG 815
Query: 297 EVEKRVVAQLLALMDGLK-SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQG 354
V RVV+Q+LA +DGL S + +IGA+NRPD IDPAL RPGRFD+ + VGV D
Sbjct: 816 GVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASY 875
Query: 355 RKEILQIHTRGMPIEPDFRKDDVLK 379
R+ +L+ TR + D V K
Sbjct: 876 RERVLKALTRKFKLSEDVSLYSVAK 900
>gb|AAD52812.1|AF129874_1 (AF129874) peroxin-6 [Pichia angusta]
Length = 1135
Score = 266 bits (672), Expect = 8e-70
Identities = 199/603 (33%), Positives = 303/603 (50%), Gaps = 104/603 (17%)
Query: 228 GKTLLAKAVANEANAYFIAINGPEIM-----SKYYGESEERLREVFKEAEENAPAIIFID 282
GK L + +A E A + ++ +++ SK G + V + I++I
Sbjct: 576 GKATLVRRIATEFGANLLELDAYDLLNQASVSKTIGTIRGKSDRV---VDSCCSVILYIR 632
Query: 283 EIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFD 342
I+A+A K+ + + + + +L L+D S+G I IG+TN DAI +R +FD
Sbjct: 633 HIEALA-KKPDPNQQQKDSMSLRLAELIDEYTSKG-AIFIGSTNDADAISELIRSKFKFD 690
Query: 343 REIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVN 402
I V P EP+ RK + +L+D K + K
Sbjct: 691 ISINV-------------------PTEPE-RKLILTDLLDDMKTKDK------------- 717
Query: 403 KSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRR 462
P VL+ D LD LA + G DL ++ A+ R
Sbjct: 718 ------TPVVLRP--------------DVSLDTLALQSAGLTANDLVSIVDNTITIAIER 757
Query: 463 LIR---EGKIDFEAETIPREVLD----ELKVTRRDFYEALKMVEPSALREV-LIEVPNVH 514
L R E K++++ ++L +K+T DF ++ + +P+V
Sbjct: 758 LERLSEEQKVNWD------QLLSFNGGRIKLTPEDFETSINDARNKFSDMIGAPRIPDVK 811
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
W+D+GGL+ VK E+ + +E PLK+PE F G+ GIL YGPPGTGKTLLAKA+AT
Sbjct: 812 WEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIATNF 870
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVNRV 632
NF +V+GPE+L+ ++GESE N+R +F+KAR A P VIF DE+D++AP+RG D V
Sbjct: 871 ALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGV 930
Query: 633 TDRIINQLLTEMDGI---QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD-EKA 688
DRI++QLL E+DG+ + GV V+ ATNRPD+LD ALLRPGRFD+++ + D +
Sbjct: 931 MDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEK 990
Query: 689 RFEIFKVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREAAMIAMRR---ALEKGII 744
+ +I + TR L VDL +A YTGAD A+C +A + AM R A+EK I
Sbjct: 991 QAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAMTRTAGAVEKKIN 1050
Query: 745 KPGMKASEIRRLAK----------------VTMKDFEEALRKIGPSVSKETMEYYRKIQE 788
+ E +++ V +DF +A ++ PSVS E +++Y ++E
Sbjct: 1051 EYNCNREEGDKISTRFWFDNIAKPEDTQVLVKSEDFAKARDELVPSVSAEELQHYLSVRE 1110
Query: 789 QFK 791
F+
Sbjct: 1111 NFE 1113
Score = 185 bits (465), Expect = 2e-45
Identities = 95/198 (47%), Positives = 136/198 (67%), Gaps = 7/198 (3%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V +ED+GGL V ++I + IE+PLKHPELF K G++ G+L YGPPGTGKTLLAKA+A
Sbjct: 810 VKWEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIAT 868
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
F ++ GPE+++ Y GESE +R VF++A + P +IF DE+D++APKR +G
Sbjct: 869 NFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSG 928
Query: 297 EVEKRVVAQLLALMDGL---KSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD-R 352
V R+V+QLLA +DG+ + V V+GATNRPD +D AL RPGRFD+ + +G+ D
Sbjct: 929 GVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTH 988
Query: 353 QGRKEILQIHTRGMPIEP 370
+ + +I+Q TR ++P
Sbjct: 989 EKQAKIIQALTRKFQLDP 1006
>sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552189|gb|AAA29520.1|
(M96757) cell division cycle ATPase [Plasmodium
falciparum]
Length = 709
Score = 265 bits (669), Expect = 2e-69
Identities = 131/226 (57%), Positives = 170/226 (74%), Gaps = 1/226 (0%)
Query: 155 ITEFTDFNISEKPVKEVE-KRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGI 213
I E + ++E+ +K + + +TYED+GG+K + KIRE+IELPLK+PE+F +GI
Sbjct: 121 IGEHSQLTLAEEYLKREDYEENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGI 180
Query: 214 EPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEE 273
PKGVL++G PGTGKT +AKA+ANE+NAY INGPEIMSK+ GESE++LR++FK+A E
Sbjct: 181 SAPKGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGESEQKLRKIFKKASE 240
Query: 274 NAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDP 333
P IIFIDEID+IA KRS+ E+EKRVV+QLL LMDGLK V+V+ ATNRP++IDP
Sbjct: 241 KTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSIDP 300
Query: 334 ALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLK 379
ALRR GRFDREIE+ VPD QGR EIL T+ M ++PD + K
Sbjct: 301 ALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIAK 346
Score = 240 bits (605), Expect = 6e-62
Identities = 122/269 (45%), Positives = 180/269 (66%), Gaps = 1/269 (0%)
Query: 465 REGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEV-PNVHWDDIGGLED 523
+ KI+F+ I E + + + L + E RE E ++ ++D+GG++
Sbjct: 97 KNNKIEFKVLKIISEESENEEFGCIGEHSQLTLAEEYLKREDYEENNDDITYEDLGGMKK 156
Query: 524 VKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRG 583
++RE +E PLKYPE F + GI+ PKG+L++G PGTGKT +AKA+A ES A + G
Sbjct: 157 QLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIANESNAYCYIING 216
Query: 584 PEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTE 643
PEI+SK +GESE+ +R+IF+KA + P +IFIDEID+IA +R N + R+++QLLT
Sbjct: 217 PEIMSKHIGESEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTL 276
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
MDG+++N V+V+AATNRP+ +DPAL R GRFDR I +P PDE+ R+EI T+ M L
Sbjct: 277 MDGLKKNNNVLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLD 336
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAM 732
DV+L+++A+ GY GAD+A +C EAA+
Sbjct: 337 PDVNLRKIAKECHGYVGADLAQLCFEAAI 365
Score = 222 bits (559), Expect = 1e-56
Identities = 103/202 (50%), Positives = 146/202 (71%), Gaps = 1/202 (0%)
Query: 468 KIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQE 527
K+D IP +L++L + + F AL + PS+LRE +++P V W+DIGG+ +VK++
Sbjct: 508 KLDKNERRIPAYILNKLTIKAKHFQHALNICNPSSLRERQVQIPTVTWNDIGGMNEVKEQ 567
Query: 528 LREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEIL 587
L+E + +PL+Y + + KGILLYGPPG GKTLLAKA+A E +ANFI+V+GPE+L
Sbjct: 568 LKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIANECKANFISVKGPELL 627
Query: 588 SKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNR-VTDRIINQLLTEMDG 646
+ W GESE N+R++F KAR A+P +IF DEID++A R ++ N +DR+INQ+LTE+DG
Sbjct: 628 TMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNNDASDRVINQILTEIDG 687
Query: 647 IQENAGVVVIAATNRPDILDPA 668
I E + +IAATNRPDILD A
Sbjct: 688 INEKKTIFIIAATNRPDILDKA 709
Score = 156 bits (390), Expect = 1e-36
Identities = 73/157 (46%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT+ DIGG+ +V E+++E I PL++ L+ K KG+LLYGPPG GKTLLAKA+AN
Sbjct: 553 VTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIAN 612
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
E A FI++ GPE+++ ++GESE +R++F +A +P IIF DEID++A +R S +
Sbjct: 613 ECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNND 672
Query: 298 VEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPA 334
RV+ Q+L +DG+ + + +I ATNRPD +D A
Sbjct: 673 ASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 709
>dbj|BAB09996.1| (AB006697) contains similarity to ATPase; peroxisome biosynthesis
protein~gene_id:MAH20.3 [Arabidopsis thaliana]
Length = 1125
Score = 264 bits (668), Expect = 2e-69
Identities = 192/611 (31%), Positives = 294/611 (47%), Gaps = 103/611 (16%)
Query: 208 FEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREV 267
F K I P +L+YGPPG+GKT+LA+A A KY+ E ++ L
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAA-----------------KYFEEQKDLL--- 624
Query: 268 FKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNR 327
A + + +A ++ + V V+A+ GL+ VI++
Sbjct: 625 ---------AHVILVSCSTLALEKVQHIHHVLSSVIAE------GLEHAPSVIIL----- 664
Query: 328 PDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKRE 387
D +D + D +G + + G+ + F D +++D+
Sbjct: 665 -DDLDSIISSSS-----------DTEGTQASV-----GVTMLTKFLTD----VIDDYGEY 703
Query: 388 GKFTKIIDKAIEEVNKSKEEEIPQVLKKID-----------------AELYDEVKTRLID 430
+ I + E+IPQ L A L E++ RL+D
Sbjct: 704 RNSSCGIGPLAFVASVQSLEQIPQTLSSSGRFDFHVQLAAPATSERGAILKHEIQKRLLD 763
Query: 431 ---KLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREV-LDELKV 486
+L LA G+ DL L A AA+ R +P E + + +
Sbjct: 764 CSEDILLNLAAKCEGYDAYDLEILVDRAVHAAIGR------------HLPLESNISKYNL 811
Query: 487 TRRDFYEALKMVEPSALREVL---IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFK 543
+ DF A+ P A+R++ E + W+D+GG+ D+K ++E +E P K+P+ F
Sbjct: 812 VKEDFTRAMHDFVPVAMRDITKSASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFA 871
Query: 544 AYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFR 603
+ +LLYGPPG GKT + A A FI+V+GPE+L+K++G SE+ +R+IF
Sbjct: 872 KSPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFS 931
Query: 604 KARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPD 663
KA AAP ++F DE D+IAP+RG D VTDR++NQ LTE+DG++ GV V AAT+RPD
Sbjct: 932 KAAAAAPCILFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPD 991
Query: 664 ILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADI 723
+LDPALLRPGR DRL+L P R EI V +R + +ADD+DL+ +A TEG++GAD+
Sbjct: 992 LLDPALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGADL 1051
Query: 724 AAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
A+ +A + A+ L + KP + I +T + K PSVS+ +
Sbjct: 1052 QALLSDAQLAAVHEYLNRE-DKPETGTTPI-----ITDPLLKSIASKTKPSVSETEKQKL 1105
Query: 784 RKIQEQFKQAR 794
I QF +R
Sbjct: 1106 YDIYSQFLDSR 1116
Score = 171 bits (428), Expect = 3e-41
Identities = 90/219 (41%), Positives = 131/219 (59%), Gaps = 2/219 (0%)
Query: 168 VKEVEKRMTTG--VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPP 225
++++ K + G + +ED+GG+ D+ I+EMIELP K P++F K + VLLYGPP
Sbjct: 828 MRDITKSASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPP 887
Query: 226 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEID 285
G GKT + A A + FI++ GPE+++KY G SE+ +R++F +A AP I+F DE D
Sbjct: 888 GCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFD 947
Query: 286 AIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREI 345
+IAPKR V RVV Q L +DG++ V V AT+RPD +DPAL RPGR DR +
Sbjct: 948 SIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLL 1007
Query: 346 EVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P R EIL + +R + + D + + + E F
Sbjct: 1008 LCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGF 1046
>gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 393
Score = 263 bits (666), Expect = 4e-69
Identities = 145/287 (50%), Positives = 189/287 (65%), Gaps = 22/287 (7%)
Query: 507 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
+IE PNV + +IGGLE+ +ELRE VE PLK PE F+ G+ PPKG+LLYGPPGTGKT+L
Sbjct: 125 IIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTML 184
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR- 625
AKAVATES A FI V E K+VGE + +RE+F A++ AP++IFIDEIDAI +R
Sbjct: 185 AKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRI 244
Query: 626 --GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
GT R R + QLL E+DG V +IAATNR DILDPALLRPGRFDR+I VP
Sbjct: 245 DIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPL 304
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PD K R EIF ++ + M + D+++L+ L++ TEG++GADI VC EAA +A+R
Sbjct: 305 PDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRN--- 361
Query: 744 IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
KVTM D EA+ KI +V + ME ++ +E++
Sbjct: 362 --------------KVTMNDLVEAINKI--NVKRNKMESMKERREKY 392
Score = 219 bits (553), Expect = 8e-56
Identities = 120/255 (47%), Positives = 165/255 (64%), Gaps = 19/255 (7%)
Query: 168 VKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 227
VK +E VTY +IGGL++ I ++RE++ELPLK+PE+F ++G+EPPKGVLLYGPPGT
Sbjct: 120 VKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGT 179
Query: 228 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAI 287
GKT+LAKAVA E+NA FI + E K+ GE +RE+F+ A+ AP+IIFIDEIDAI
Sbjct: 180 GKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAI 239
Query: 288 APKRSEV--TGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDRE 344
KR ++ +GE E +R + QLLA +DG V +I ATNR D +DPAL RPGRFDR
Sbjct: 240 GAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRI 299
Query: 345 IEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFK----------------REG 388
IEV +PD +GR EI I+ + M IE + + + ++ E F R+G
Sbjct: 300 IEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDG 359
Query: 389 KFTKIIDKAIEEVNK 403
+ ++ +E +NK
Sbjct: 360 RNKVTMNDLVEAINK 374
>pir||G71242 probable 26S proteinase regulatory subunit - Pyrococcus horikoshii
>gi|3256587|dbj|BAA29270.1| (AP000001) 399aa long
hypothetical 26S protease regulatory subunit [Pyrococcus
horikoshii]
Length = 399
Score = 263 bits (666), Expect = 4e-69
Identities = 145/276 (52%), Positives = 181/276 (65%), Gaps = 21/276 (7%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P+ L +IE PNV ++DIGGL+ QELREA+E PLK+PE F+ GI PPKG+LLYGP
Sbjct: 123 DPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGP 182
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PG GKTL+AKA+A E A FI V G E++ K++GE + + E+F A++ APT+IFIDEI
Sbjct: 183 PGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEI 242
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI +R T R +R + QLL EMDG V VIAATNRPDILDPALLRPGRF
Sbjct: 243 DAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRF 302
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DRLI VP PD + R EI KVHTR M L VDL+ +A TEG +GAD+ A+ EA M A+
Sbjct: 303 DRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAI 361
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
R R VT +DF +A+ K+
Sbjct: 362 R-----------------ERRTYVTQEDFLKAVDKV 380
Score = 238 bits (600), Expect = 2e-61
Identities = 146/316 (46%), Positives = 190/316 (59%), Gaps = 31/316 (9%)
Query: 83 DEVTVRKAEVREAK-KVTLAPTEPIRFGRDFVEWLHE--RLVGRPVVRGDYIKVGVLGQE 139
D +T K +R+ + +V + + R R+ E RL P G I+V L ++
Sbjct: 17 DYITYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEV--LDED 74
Query: 140 LTFVVTATQPSGVVQITEFTDFN---------ISEKPVKEVEKRMTT------------- 177
V P VV+I + D + ++ + VE T+
Sbjct: 75 RAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIER 134
Query: 178 -GVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
VTY DIGGLK ++++RE IELPLKHPELFE++GI+PPKGVLLYGPPG GKTL+AKA+
Sbjct: 135 PNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAL 194
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT- 295
A+E NA FI + G E++ KY GE + E+F+ A+E AP IIFIDEIDAI KR + T
Sbjct: 195 AHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETT 254
Query: 296 -GEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
GE E R + QLLA MDG RG V VI ATNRPD +DPAL RPGRFDR IEV +PD +
Sbjct: 255 GGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFE 314
Query: 354 GRKEILQIHTRGMPIE 369
GR EIL++HTR M ++
Sbjct: 315 GRLEILKVHTRRMKLK 330
>gi|6324000 Member of the AAA-protein family that includes NSFp and PEX1p; Pex6p
[Saccharomyces cerevisiae]
>gi|464348|sp|P33760|PEX6_YEAST PEROXISOME BIOSYNTHESIS
PROTEIN PAS8 (PEROXIN-6) >gi|539317|pir||S43211 probable
ATP-binding protein PAS8 - yeast (Saccharomyces
cerevisiae) >gi|393287|gb|AAA16574.1| (L20789) PAS8
[Saccharomyces cerevisiae] >gi|633657|emb|CAA86369.1|
(Z46259) PAS8 gene [Saccharomyces cerevisiae]
>gi|1302449|emb|CAA96261.1| (Z71605) ORF YNL329c
[Saccharomyces cerevisiae]
Length = 1030
Score = 263 bits (665), Expect = 6e-69
Identities = 186/548 (33%), Positives = 280/548 (50%), Gaps = 87/548 (15%)
Query: 275 APAIIFIDEIDAIA----PKRSEVTGEVEKRVVAQLLALMDGL--KSRGKVIVIGATNRP 328
+PA+IF+ +D+I + +++K + ++ L+D K G V G+ N
Sbjct: 541 SPAVIFLAHLDSILLDVNANQDPEAIKLQKSINFEMSKLLDDFTFKFPGTTFV-GSVNNI 599
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREG 388
D + + R RF EI V VP R I Q +
Sbjct: 600 DNVPSSFRSHMRF--EILVPVPSEAQRLRIFQWYLSS----------------------- 634
Query: 389 KFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADL 448
E+N+ ++++P D + L+ + G D+
Sbjct: 635 ----------HELNRDVQQKVP-------VSYMDNIS-------FSSLSSYSAGLTPLDI 670
Query: 449 AALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV-L 507
++ A M A R +E K + +P+ +L +T+ D +A +
Sbjct: 671 KSIVETARMTATARFYQESK---KCGWLPQSIL----ITQEDLSKATSKARNEFSVSIGA 723
Query: 508 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLA 567
++PNV WDDIGG++ VK E+ + ++ PLK+PE F + G+ GIL YGPPGTGKTL+A
Sbjct: 724 PQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMA 782
Query: 568 KAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT 627
KA+AT NF +V+GPE+L+ ++GESE N+R +F+KAR+A P VIF DEID++AP+RG
Sbjct: 783 KAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGN 842
Query: 628 --DVNRVTDRIINQLLTEMDGIQENA-GVVVIAATNRPDILDPALLRPGRFDRLILVPAP 684
D V DRI++QLL E+DG+ +A GV VI ATNRPD+LD ALLRPGRFD+L+ + P
Sbjct: 843 QGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIP 902
Query: 685 D-EKARFEIFKVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREA---AMIAMRRAL 739
D + + I + TR L +DV L ELA+ YTGAD A+C +A AM + R +
Sbjct: 903 DTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAMSRIARMV 962
Query: 740 EKGIIK----PGMKASEIRRLAK----------VTMKDFEEALRKIGPSVSKETMEYYRK 785
EK + + G S R K V M+DF +A ++ PSVS+ + +Y
Sbjct: 963 EKKVSQHNELTGENISTRRWFDKIATKEDTKVVVKMEDFLKAQEQLTPSVSRAELNHYEA 1022
Query: 786 IQEQFKQA 793
++ F+ A
Sbjct: 1023 VRANFEGA 1030
Score = 187 bits (471), Expect = 3e-46
Identities = 97/206 (47%), Positives = 141/206 (68%), Gaps = 5/206 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT++DIGG+ V +I + I++PLKHPELF G++ G+L YGPPGTGKTL+AKA+A
Sbjct: 729 VTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIAT 787
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
+ F ++ GPE+++ Y GESE +R VF++A E P +IF DEID++APKR +G
Sbjct: 788 NFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSG 847
Query: 297 EVEKRVVAQLLALMDGLKSRGK-VIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
V R+V+QLLA +DG+ + V VIGATNRPD +D AL RPGRFD+ + +G+PD +
Sbjct: 848 GVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTK 907
Query: 356 K-EILQIHTRGMPIEPDFRKDDVLKI 380
+ IL+ TR ++ D + ++ K+
Sbjct: 908 QLNILEALTRKFVLDNDVKLIELAKL 933
>emb|CAA58229.1| (X83226) peroxisome biogenesis invlved proteind [Saccharomyces
cerevisiae]
Length = 889
Score = 263 bits (665), Expect = 6e-69
Identities = 186/548 (33%), Positives = 280/548 (50%), Gaps = 87/548 (15%)
Query: 275 APAIIFIDEIDAIA----PKRSEVTGEVEKRVVAQLLALMDGL--KSRGKVIVIGATNRP 328
+PA+IF+ +D+I + +++K + ++ L+D K G V G+ N
Sbjct: 400 SPAVIFLAHLDSILLDVNANQDPEAIKLQKSINFEMSKLLDDFTFKFPGTTFV-GSVNNI 458
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREG 388
D + + R RF EI V VP R I Q +
Sbjct: 459 DNVPSSFRSHMRF--EILVPVPSEAQRLRIFQWYLSS----------------------- 493
Query: 389 KFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADL 448
E+N+ ++++P D + L+ + G D+
Sbjct: 494 ----------HELNRDVQQKVP-------VSYMDNIS-------FSSLSSYSAGLTPLDI 529
Query: 449 AALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREV-L 507
++ A M A R +E K + +P+ +L +T+ D +A +
Sbjct: 530 KSIVETARMTATARFYQESK---KCGWLPQSIL----ITQEDLSKATSKARNEFSVSIGA 582
Query: 508 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLA 567
++PNV WDDIGG++ VK E+ + ++ PLK+PE F + G+ GIL YGPPGTGKTL+A
Sbjct: 583 PQIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMA 641
Query: 568 KAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT 627
KA+AT NF +V+GPE+L+ ++GESE N+R +F+KAR+A P VIF DEID++AP+RG
Sbjct: 642 KAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGN 701
Query: 628 --DVNRVTDRIINQLLTEMDGIQENA-GVVVIAATNRPDILDPALLRPGRFDRLILVPAP 684
D V DRI++QLL E+DG+ +A GV VI ATNRPD+LD ALLRPGRFD+L+ + P
Sbjct: 702 QGDSGGVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIP 761
Query: 685 D-EKARFEIFKVHTRGMPLADDVDLKELARRTE-GYTGADIAAVCREA---AMIAMRRAL 739
D + + I + TR L +DV L ELA+ YTGAD A+C +A AM + R +
Sbjct: 762 DTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAMSRIARMV 821
Query: 740 EKGIIK----PGMKASEIRRLAK----------VTMKDFEEALRKIGPSVSKETMEYYRK 785
EK + + G S R K V M+DF +A ++ PSVS+ + +Y
Sbjct: 822 EKKVSQHNELTGENISTRRWFDKIATKEDTKVVVKMEDFLKAQEQLTPSVSRAELNHYEA 881
Query: 786 IQEQFKQA 793
++ F+ A
Sbjct: 882 VRANFEGA 889
Score = 187 bits (471), Expect = 3e-46
Identities = 97/206 (47%), Positives = 141/206 (68%), Gaps = 5/206 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT++DIGG+ V +I + I++PLKHPELF G++ G+L YGPPGTGKTL+AKA+A
Sbjct: 588 VTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIAT 646
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
+ F ++ GPE+++ Y GESE +R VF++A E P +IF DEID++APKR +G
Sbjct: 647 NFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSG 706
Query: 297 EVEKRVVAQLLALMDGLKSRGK-VIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
V R+V+QLLA +DG+ + V VIGATNRPD +D AL RPGRFD+ + +G+PD +
Sbjct: 707 GVMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTK 766
Query: 356 K-EILQIHTRGMPIEPDFRKDDVLKI 380
+ IL+ TR ++ D + ++ K+
Sbjct: 767 QLNILEALTRKFVLDNDVKLIELAKL 792
>pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococcus abyssi
(strain Orsay) >gi|5457620|emb|CAB49111.1| (AJ248283)
26S protease regulatory subunit 4 [Pyrococcus abyssi]
Length = 399
Score = 263 bits (665), Expect = 6e-69
Identities = 145/276 (52%), Positives = 182/276 (65%), Gaps = 21/276 (7%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P+ L +IE PNV ++DIGGL+ QELREA+E PLK+PE F+ GI PPKG+LLYGP
Sbjct: 123 DPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGP 182
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PG GKTL+AKA+A E A FI V G E++ K++GE + + E+F A++ APT+IFIDEI
Sbjct: 183 PGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEI 242
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI +R T R +R + QLL EMDG V VIAATNRPDILDPALLRPGRF
Sbjct: 243 DAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRF 302
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DRLI VP PD + R EI KVHTR M L +VDL+ +A TEG +GAD+ A+ EA M A+
Sbjct: 303 DRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAI 361
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
R R VT +DF +A+ K+
Sbjct: 362 R-----------------ERRTYVTQEDFLKAVDKV 380
Score = 237 bits (598), Expect = 4e-61
Identities = 122/194 (62%), Positives = 148/194 (75%), Gaps = 3/194 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY DIGGLK ++++RE IELPLKHPELFE++GI+PPKGVLLYGPPG GKTL+AKA+A+
Sbjct: 137 VTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAH 196
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT--G 296
E NA FI + G E++ KY GE + E+F+ A+E AP IIFIDEIDAI KR + T G
Sbjct: 197 EVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGG 256
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
E E R + QLLA MDG RG V VI ATNRPD +DPAL RPGRFDR IEV +PD +GR
Sbjct: 257 EREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGR 316
Query: 356 KEILQIHTRGMPIE 369
EIL++HTR M ++
Sbjct: 317 LEILKVHTRRMKLK 330
>gb|AAD52811.1|AF129873_1 (AF129873) peroxin-1 [Pichia angusta]
Length = 1074
Score = 263 bits (664), Expect = 7e-69
Identities = 177/559 (31%), Positives = 281/559 (49%), Gaps = 80/559 (14%)
Query: 191 IEKIREMIELPLK-HPELFEKL--GIEPPKGVLLYGPPGTGKTLLAKAVANEA----NAY 243
+E+ E +LP+ H EL ++ + +L G G+GKT L VA+ Y
Sbjct: 469 VERQYEQKDLPIVGHKELIARMVRSVRHGHNCVLSGASGSGKTTLINEVAHRLVTLHGYY 528
Query: 244 FIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVV 303
IN I + + + L E KE ++P+++ ++ +D++ P+ E R V
Sbjct: 529 SKNINCETISNDNFHAIKTLLEEAVKEVNWHSPSVLVLENLDSLIPQEMEHGDSGLSRQV 588
Query: 304 AQLLALMDGLKSRGKVI-VIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIH 362
++ L + +R + I ++ ++ +A++ + + +E + PD++ RKE
Sbjct: 589 SEFLVNSLKVLTRERAISLLCSSKSKEALNATVFQTHLIQQEFSLKAPDKELRKE----- 643
Query: 363 TRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD 422
+L F I + N E+E
Sbjct: 644 -----------------LLRSF-------------INDYNMDLEKE-------------- 659
Query: 423 EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLD 482
++L+++ T G++ +DL LA + KID D
Sbjct: 660 --------EILNDITVETEGYLPSDLKVLADRTFHDYI-----SSKID----------KD 696
Query: 483 ELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAF 542
+ + +F AL+ PS+LR V ++ V W DIGGL+D K+ L E +EWP KY F
Sbjct: 697 DFHLRASNFERALQGFVPSSLRGVKLQKSGVAWSDIGGLKDAKRVLLETLEWPTKYAPIF 756
Query: 543 KAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
+ GILLYG PG GKTLLA AV ++ NFI+++GPEIL+K++G SE++IRE+F
Sbjct: 757 ANCPLRLRSGILLYGYPGCGKTLLASAVVSQCGLNFISIKGPEILNKYIGASEQSIRELF 816
Query: 603 RKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRP 662
+A+ A P V+F DE D+IAP+RG D VTDR++NQLLT+MDG + GV V+AAT+RP
Sbjct: 817 DRAQSAKPCVLFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGLDGVYVLAATSRP 876
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 722
D++D ALLRPGR D+ IL PD + R +I + ++++ L AR+ EGY+GAD
Sbjct: 877 DLIDSALLRPGRLDKSILCDLPDYENRLDILQTVASKFHVSEECRLDHFARKLEGYSGAD 936
Query: 723 IAAVCREAAMIAMRRALEK 741
+ A A + A+ L++
Sbjct: 937 LQAFVYNAYLKAVHDNLDQ 955
Score = 176 bits (443), Expect = 6e-43
Identities = 93/212 (43%), Positives = 125/212 (58%)
Query: 173 KRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLL 232
K +GV + DIGGLKD + E +E P K+ +F + G+LLYG PG GKTLL
Sbjct: 721 KLQKSGVAWSDIGGLKDAKRVLLETLEWPTKYAPIFANCPLRLRSGILLYGYPGCGKTLL 780
Query: 233 AKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRS 292
A AV ++ FI+I GPEI++KY G SE+ +RE+F A+ P ++F DE D+IAPKR
Sbjct: 781 ASAVVSQCGLNFISIKGPEILNKYIGASEQSIRELFDRAQSAKPCVLFFDEFDSIAPKRG 840
Query: 293 EVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
+ V RVV QLL MDG + V V+ AT+RPD ID AL RPGR D+ I +PD
Sbjct: 841 HDSTGVTDRVVNQLLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSILCDLPDY 900
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+ R +ILQ + + R D + LE +
Sbjct: 901 ENRLDILQTVASKFHVSEECRLDHFARKLEGY 932
>gb|AAF58736.1| (AE003828) CG11919 gene product [Drosophila melanogaster]
Length = 897
Score = 260 bits (658), Expect = 4e-68
Identities = 179/580 (30%), Positives = 300/580 (50%), Gaps = 58/580 (10%)
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL G G+GK+ L AVA E + + EI+S+ +E +L+ VF +++ P +I
Sbjct: 365 LLQGERGSGKSKLVSAVAQELGMHIYGADCAEIVSQVPSHTEMKLKAVFAKSQVCEPLMI 424
Query: 280 FIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKV--IVIGATNRPDAIDPALRR 337
+ G + R+++ + L +R + IV+ A + P ++
Sbjct: 425 CFHNFEIFGIDNE---GNEDLRLLSAFHVQVQELFNRDRKHPIVVVALTSDRHLKPMIQ- 480
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKA 397
G F I + +P ++ R EIL R M + F +D++ KA
Sbjct: 481 -GLFLEIINIDMPSKEERFEIL----RWMHVRETF--NDII--------------YNQKA 519
Query: 398 IEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAM 457
IE++ E Q + +I + + +L ++A + GF+ DL L A
Sbjct: 520 IEQLPLFSRENQSQFMPRISPSWRETLN------VLQDVAAKSQGFLLGDLQLLYDNAVR 573
Query: 458 AALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDD 517
+R R G+ + + + D + F ++L + VP V+W D
Sbjct: 574 MKIRN--RLGRTTLDMSHFAKNLTD----MQSSFADSLGAPK----------VPKVYWSD 617
Query: 518 IGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQAN 577
IGGL +K E++ ++ PLK+ GILLYGPPGTGKTL+AKAVATE +
Sbjct: 618 IGGLAKLKDEIQSSIGLPLKHVHLMGKN--LRRSGILLYGPPGTGKTLVAKAVATECNLS 675
Query: 578 FIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT--DVNRVTDR 635
F++V+GPE+L+ +VG+SE+N+RE+F +AR AAP V+F+DE+D++AP RG D V DR
Sbjct: 676 FLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGVAGDSGGVMDR 735
Query: 636 IINQLLTEMDGIQE---NAGVVVIAATNRPDILDPALLRPGRFDRLILV-PAPDEKARFE 691
+++QLL EMDG+ + + + ++AATNRPD++DPALLRPGRFD+L V P + +
Sbjct: 736 VVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPCSTAEDKAA 795
Query: 692 IFKVHTRGMPLADDVDLKELARRTEG-YTGADIAAVCREAAMIAMRRALEKGIIKPGMKA 750
+ + T+ L VD++++A R + +GAD+ ++C A + A+RR ++ + +
Sbjct: 796 VLRAQTQRFALDAGVDMEQIAERLKSEMSGADLYSICSNAWLSAVRRTIDGHLSGTISEK 855
Query: 751 SEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ V +DF ++ K PS+S + +EY+ ++ +
Sbjct: 856 ELVPENVIVQEEDFTKSFNKFVPSISAKDLEYFNNLKASY 895
Score = 168 bits (422), Expect = 2e-40
Identities = 95/215 (44%), Positives = 134/215 (62%), Gaps = 11/215 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V + DIGGL + ++I+ I LPLKH L K G+LLYGPPGTGKTL+AKAVA
Sbjct: 613 VYWSDIGGLAKLKDEIQSSIGLPLKHVHLMGKNLRR--SGILLYGPPGTGKTLVAKAVAT 670
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
E N F+++ GPE+++ Y G+SE+ +REVF A AP ++F+DE+D++AP R +G
Sbjct: 671 ECNLSFLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGVAGDSG 730
Query: 297 EVEKRVVAQLLALMDGLK---SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVG-VPDR 352
V RVV+QLLA MDG+ + + ++ ATNRPD IDPAL RPGRFD+ VG
Sbjct: 731 GVMDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPCSTA 790
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKRE 387
+ + +L+ T+ ++ D+ +I E K E
Sbjct: 791 EDKAAVLRAQTQRFALDAGV---DMEQIAERLKSE 822
>gb|AAF20144.1|AF208231_1 (AF208231) peroxisome assembly protein Pex1p [Yarrowia lipolytica]
Length = 1023
Score = 258 bits (652), Expect = 2e-67
Identities = 184/617 (29%), Positives = 307/617 (48%), Gaps = 107/617 (17%)
Query: 130 YIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKD 189
+I+ G LG+E V+ ++ +++ ++ ++S ++ +KR+ GL +
Sbjct: 372 WIQGGYLGEEPIPFVSGSE---ILR----SESSLSPSNIESEDKRVV---------GLDN 415
Query: 190 VIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE---ANAYFIA 246
++ KI E++ G L YG G+GK+ + + E ++ + ++
Sbjct: 416 MLNKINEVLS--------------RDSIGCLDYGSRGSGKSAVLNHIKKECKVSHTHTVS 461
Query: 247 INGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQL 306
I I E L + F EA +P+++F+D+IDA+ P E R + QL
Sbjct: 462 IACGLIAQDRVQAVREILTKAFLEASWFSPSVLFLDDIDALMPAEVEHADSSRTRQLTQL 521
Query: 307 LA--LMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
+ +KSR V V+ + +++ L F+ + PD++ R IL
Sbjct: 522 FLELALPIMKSR-HVSVVASAQAKESLHMNLVTGHVFEELFHLKSPDKEARLAILS---- 576
Query: 365 GMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEV 424
+ +K+++ + V+ S+ + +
Sbjct: 577 -----------EAVKLMD----------------QNVSFSQNDVL--------------- 594
Query: 425 KTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDEL 484
E+A G++ DL L+ A R I G L+
Sbjct: 595 ----------EIASQVDGYLPGDLWTLSERAQHEMALRQIEIG-------------LENP 631
Query: 485 KVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKA 544
+ DF +AL+ PS+LR V ++ NV W+DIGGL++ K L E +EWP KY F +
Sbjct: 632 SIQLADFMKALEDFVPSSLRGVKLQKSNVKWNDIGGLKETKAVLLETLEWPTKYAPIFAS 691
Query: 545 YGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRK 604
+ G+LLYG PG GKT LA AVA + NFI+++GPEIL+K++G SE+++RE+F
Sbjct: 692 CPLRLRSGLLLYGYPGCGKTYLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELF-G 750
Query: 605 ARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDI 664
A+ A P ++F DE D+IAP+RG D VTDR++NQ+LT+MDG + GV V+AAT+RPD+
Sbjct: 751 AQAAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDL 810
Query: 665 LDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG-MPLADDVDLKELARRTEGYTGADI 723
+DPALLRPGR D++++ P + R +I + G M L +V+L+ +A RT+G++GAD+
Sbjct: 811 IDPALLRPGRLDKMLICDLPSYEDRLDILRAIVDGKMHLDGEVELEYVASRTDGFSGADL 870
Query: 724 AAVCREAAMIAMRRALE 740
AV A + A+ ++
Sbjct: 871 QAVMFNAYLEAIHEVVD 887
>sp|Q13608|PEX6_HUMAN PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|2135899|pir||S71090 peroxisome
biogenesis disorder group 4 protein PXAAA1 - human
>gi|1354753|gb|AAC50655.1| (U56602) Pxaaa1p [Homo
sapiens]
Length = 980
Score = 254 bits (643), Expect = 2e-66
Identities = 151/367 (41%), Positives = 228/367 (61%), Gaps = 18/367 (4%)
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDE-LKVTRRDF 491
L +LA GFV DL AL ++ AA R+ G E E+ + DF
Sbjct: 620 LAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDF 679
Query: 492 YEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP 550
+AL+ ++ + + V ++P+V W D+GGL++VK+E+ E ++ PL++PE + G+
Sbjct: 680 GQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRR- 737
Query: 551 KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAP 610
G+LL+GPPGTGKTLLAKAVATE F++V+GPE+++ +VG+SE+N+RE+F +AR AAP
Sbjct: 738 SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAP 797
Query: 611 TVIFIDEIDAIAPRRGT--DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPA 668
+IF DE+D++AP RG D V DR+++QLL E+DG+ V VI ATNRPD+LDPA
Sbjct: 798 CIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPA 857
Query: 669 LLRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDL-KELARRTEGYTGADIAAV 726
LLRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++
Sbjct: 858 LLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSL 917
Query: 727 CREAAMIAMRRA---LEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
C +A A++R LE+G ++PG A +TM+D +A ++ PSVS++ + Y
Sbjct: 918 CSDAMTAALKRRVHDLEEG-LEPGSSA------LMLTMEDLLQAAARLQPSVSEQELLRY 970
Query: 784 RKIQEQF 790
++IQ +F
Sbjct: 971 KRIQRKF 977
Score = 195 bits (491), Expect = 1e-48
Identities = 107/203 (52%), Positives = 141/203 (68%), Gaps = 5/203 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V++ D+GGL++V ++I E I+LPL+HPEL LG+ G+LL+GPPGTGKTLLAKAVA
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAKAVAT 759
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK--RSEVTG 296
E + F+++ GPE+++ Y G+SEE +REVF A AP IIF DE+D++AP RS +G
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 819
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQGR 355
V RVV+QLLA +DGL S V VIGATNRPD +DPAL RPGRFD+ + VG DR +
Sbjct: 820 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQ 879
Query: 356 KEILQIHTRGMPIEPDFRKDDVL 378
+L TR +EP +VL
Sbjct: 880 LRVLSAITRKFKLEPSVSLVNVL 902
Score = 81.9 bits (199), Expect = 2e-14
Identities = 55/198 (27%), Positives = 94/198 (46%), Gaps = 3/198 (1%)
Query: 547 ITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKAR 606
+T +LL GPPG GKT + A + + + V + ++ G E ++ IF +AR
Sbjct: 460 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 519
Query: 607 QAAPTVIFIDEIDAIA-PRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
+ P V+ + +D + R G + ++ LL D + ++V+A T+R L
Sbjct: 520 RCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDL 579
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
PA ++ F + VPA E R I + T +PL +V+L +LARR G+ D+ A
Sbjct: 580 -PADVQTA-FPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYA 637
Query: 726 VCREAAMIAMRRALEKGI 743
+ ++ A R G+
Sbjct: 638 LLTHSSRAACTRIKNSGL 655
>gi|4505729 peroxisomal biogenesis factor 6; Peroxisomal biogenesis factor 6
(peroxisomal AAA-type ATPase 1); peroxisome biogenesis
factor 6 [Homo sapiens] >gi|1747316|dbj|BAA12069.1|
(D83703) peroxisome assembly factor-2 [Homo sapiens]
>gi|7453117|gb|AAF62564.1| (AF108098) peroxisome
assembly factor-2 [Homo sapiens]
Length = 980
Score = 254 bits (643), Expect = 2e-66
Identities = 151/367 (41%), Positives = 228/367 (61%), Gaps = 18/367 (4%)
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDE-LKVTRRDF 491
L +LA GFV DL AL ++ AA R+ G E E+ + DF
Sbjct: 620 LAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDF 679
Query: 492 YEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP 550
+AL+ ++ + + V ++P+V W D+GGL++VK+E+ E ++ PL++PE + G+
Sbjct: 680 GQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRR- 737
Query: 551 KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAP 610
G+LL+GPPGTGKTLLAKAVATE F++V+GPE+++ +VG+SE+N+RE+F +AR AAP
Sbjct: 738 SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAP 797
Query: 611 TVIFIDEIDAIAPRRGT--DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPA 668
+IF DE+D++AP RG D V DR+++QLL E+DG+ V VI ATNRPD+LDPA
Sbjct: 798 CIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPA 857
Query: 669 LLRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDL-KELARRTEGYTGADIAAV 726
LLRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++
Sbjct: 858 LLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSL 917
Query: 727 CREAAMIAMRRA---LEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
C +A A++R LE+G ++PG A +TM+D +A ++ PSVS++ + Y
Sbjct: 918 CSDAMTAALKRRVHDLEEG-LEPGSSA------LMLTMEDLLQAAARLQPSVSEQELLRY 970
Query: 784 RKIQEQF 790
++IQ +F
Sbjct: 971 KRIQRKF 977
Score = 195 bits (491), Expect = 1e-48
Identities = 107/203 (52%), Positives = 141/203 (68%), Gaps = 5/203 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V++ D+GGL++V ++I E I+LPL+HPEL LG+ G+LL+GPPGTGKTLLAKAVA
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAKAVAT 759
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK--RSEVTG 296
E + F+++ GPE+++ Y G+SEE +REVF A AP IIF DE+D++AP RS +G
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 819
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQGR 355
V RVV+QLLA +DGL S V VIGATNRPD +DPAL RPGRFD+ + VG DR +
Sbjct: 820 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQ 879
Query: 356 KEILQIHTRGMPIEPDFRKDDVL 378
+L TR +EP +VL
Sbjct: 880 LRVLSAITRKFKLEPSVSLVNVL 902
Score = 81.9 bits (199), Expect = 2e-14
Identities = 55/198 (27%), Positives = 94/198 (46%), Gaps = 3/198 (1%)
Query: 547 ITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKAR 606
+T +LL GPPG GKT + A + + + V + ++ G E ++ IF +AR
Sbjct: 460 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 519
Query: 607 QAAPTVIFIDEIDAIA-PRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
+ P V+ + +D + R G + ++ LL D + ++V+A T+R L
Sbjct: 520 RCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDL 579
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
PA ++ F + VPA E R I + T +PL +V+L +LARR G+ D+ A
Sbjct: 580 -PADVQTA-FPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYA 637
Query: 726 VCREAAMIAMRRALEKGI 743
+ ++ A R G+
Sbjct: 638 LLTHSSRAACTRIKNSGL 655
>gi|11417640 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 600
Score = 254 bits (643), Expect = 2e-66
Identities = 151/367 (41%), Positives = 228/367 (61%), Gaps = 18/367 (4%)
Query: 433 LDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDE-LKVTRRDF 491
L +LA GFV DL AL ++ AA R+ G E E+ + DF
Sbjct: 240 LAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDF 299
Query: 492 YEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP 550
+AL+ ++ + + V ++P+V W D+GGL++VK+E+ E ++ PL++PE + G+
Sbjct: 300 GQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRR- 357
Query: 551 KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAP 610
G+LL+GPPGTGKTLLAKAVATE F++V+GPE+++ +VG+SE+N+RE+F +AR AAP
Sbjct: 358 SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAP 417
Query: 611 TVIFIDEIDAIAPRRGT--DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPA 668
+IF DE+D++AP RG D V DR+++QLL E+DG+ V VI ATNRPD+LDPA
Sbjct: 418 CIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPA 477
Query: 669 LLRPGRFDRLILVPAPDEKA-RFEIFKVHTRGMPLADDVDL-KELARRTEGYTGADIAAV 726
LLRPGRFD+L+ V A +++A + + TR L V L L TGAD+ ++
Sbjct: 478 LLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSL 537
Query: 727 CREAAMIAMRRA---LEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
C +A A++R LE+G ++PG A +TM+D +A ++ PSVS++ + Y
Sbjct: 538 CSDAMTAALKRRVHDLEEG-LEPGSSA------LMLTMEDLLQAAARLQPSVSEQELLRY 590
Query: 784 RKIQEQF 790
++IQ +F
Sbjct: 591 KRIQRKF 597
Score = 195 bits (491), Expect = 1e-48
Identities = 107/203 (52%), Positives = 141/203 (68%), Gaps = 5/203 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V++ D+GGL++V ++I E I+LPL+HPEL LG+ G+LL+GPPGTGKTLLAKAVA
Sbjct: 322 VSWHDVGGLQEVKKEILETIQLPLEHPELLS-LGLRR-SGLLLHGPPGTGKTLLAKAVAT 379
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK--RSEVTG 296
E + F+++ GPE+++ Y G+SEE +REVF A AP IIF DE+D++AP RS +G
Sbjct: 380 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 439
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQGR 355
V RVV+QLLA +DGL S V VIGATNRPD +DPAL RPGRFD+ + VG DR +
Sbjct: 440 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQ 499
Query: 356 KEILQIHTRGMPIEPDFRKDDVL 378
+L TR +EP +VL
Sbjct: 500 LRVLSAITRKFKLEPSVSLVNVL 522
Score = 81.9 bits (199), Expect = 2e-14
Identities = 55/198 (27%), Positives = 94/198 (46%), Gaps = 3/198 (1%)
Query: 547 ITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKAR 606
+T +LL GPPG GKT + A + + + V + ++ G E ++ IF +AR
Sbjct: 80 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 139
Query: 607 QAAPTVIFIDEIDAIA-PRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
+ P V+ + +D + R G + ++ LL D + ++V+A T+R L
Sbjct: 140 RCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDL 199
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
PA ++ F + VPA E R I + T +PL +V+L +LARR G+ D+ A
Sbjct: 200 -PADVQTA-FPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYA 257
Query: 726 VCREAAMIAMRRALEKGI 743
+ ++ A R G+
Sbjct: 258 LLTHSSRAACTRIKNSGL 275
>gb|AAB46346.1| (AC000064) ATPase; strong similarity to peroxisome biosynthesis
protein PAS1 (PID:g1172019); coded for by human cDNA
C04279 (NID:g1467530) [Homo sapiens]
Length = 541
Score = 252 bits (638), Expect = 8e-66
Identities = 145/354 (40%), Positives = 209/354 (58%), Gaps = 44/354 (12%)
Query: 412 VLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDF 471
+ K+D ++ + D L +A T GFV D L A + L R
Sbjct: 59 IKNKLDCDI-----NKFTDLDLQHVAKETGGFVARDFTVLVDRAIHSRLSR--------- 104
Query: 472 EAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVP-NVHWDDIGGLEDVKQELRE 530
++I ++L +T DF +AL+ P++LR V + P ++ WD IGGL +V+Q L +
Sbjct: 105 --QSISTR--EKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMD 160
Query: 531 AVEWPLK-------YPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRG 583
++ P K YPE F I GILLYGPPGTGKTLLA +A ES+ NFI+V+G
Sbjct: 161 TIQLPAKVCLKKEKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKG 220
Query: 584 PEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTE 643
PE+LSK++G SE+ +R+IF +A+ A P ++F DE ++IAPRRG D VTDR++NQLLT+
Sbjct: 221 PELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQ 280
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE----------------- 686
+DG++ GV V+AAT+RPD++DPALLRPGR D+ + P PD+
Sbjct: 281 LDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVTISYLESKTQQMLHSF 340
Query: 687 -KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRAL 739
+R EI V + +PLADDVDL+ +A T+ +TGAD+ A+ A + A+ L
Sbjct: 341 LVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGML 394
Score = 166 bits (415), Expect = 1e-39
Identities = 107/291 (36%), Positives = 149/291 (50%), Gaps = 48/291 (16%)
Query: 181 YEDIGGLKDVIEKIREMIELPLK-------HPELFEKLGIEPPKGVLLYGPPGTGKTLLA 233
++ IGGL +V + + + I+LP K +PELF L I G+LLYGPPGTGKTLLA
Sbjct: 145 WDKIGGLHEVRQILMDTIQLPAKVCLKKEKYPELFANLPIRQRTGILLYGPPGTGKTLLA 204
Query: 234 KAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE 293
+A E+ FI++ GPE++SKY G SE+ +R++F A+ P I+F DE ++IAP+R
Sbjct: 205 GVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGH 264
Query: 294 VTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
V RVV QLL +DG++ V V+ AT+RPD IDPAL RPGR D+ + PD Q
Sbjct: 265 DNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPD-Q 323
Query: 354 GRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVL 413
L+ T+ M + ++L +L D
Sbjct: 324 VTISYLESKTQQMLHSFLVSRLEILNVLSD------------------------------ 353
Query: 414 KKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLI 464
L D+V L +A VT F GADL AL A + AL ++
Sbjct: 354 ---SLPLADDVD-------LQHVASVTDSFTGADLKALLYNAQLEALHGML 394
>gb|AAF47769.1| (AE003478) CG12010 gene product [Drosophila melanogaster]
Length = 736
Score = 250 bits (633), Expect = 3e-65
Identities = 190/615 (30%), Positives = 295/615 (47%), Gaps = 139/615 (22%)
Query: 216 PKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN- 274
P L+ GP GK+ L + I +++ Y GE+EE LR +F+ A+
Sbjct: 220 PTTALVVGPVDCGKSGLLSEFLRRHSCNCFYITASQVLRSYPGETEEELRRIFQAAQTFK 279
Query: 275 -------------------------APAIIFIDEIDAIAPKRSEVTGEVEK---RVVAQL 306
P +I I++++ + P + + R+ A+L
Sbjct: 280 EKLRPLCNFHSVCFTFEILISFIFIVPIVILIEDLELLCPSTAVADAKNSSNSLRISAEL 339
Query: 307 LALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGM 366
L+D L RG +I + + PD++ RR RF RE+ + +P
Sbjct: 340 YKLLDALP-RG-IICLATSGVPDSLHEHARR--RFVREVTINMPS--------------- 380
Query: 367 PIEPDFRKDDVLKILEDFKREGKFTKIIDKAIE--EVNKSKEEEIPQVLKKIDAELYDEV 424
EG+ ++++ E E+N S+
Sbjct: 381 --------------------EGQRRQLVEHLCEVHELNISQT------------------ 402
Query: 425 KTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDEL 484
LL+ +A T G+V ADL L R L K DF+ E I
Sbjct: 403 -------LLEHIARNTQGYVIADLTLLLRRVQQQLLT------KDDFDIEHI-------- 441
Query: 485 KVTRRDFYEALKMVEPSALREVLIEVPNVH--WDDIGGLEDVKQELREAVEWPLKYPEAF 542
F ++L +PSA R + V + ++ IGG+E +K+ L+ +V ++ AF
Sbjct: 442 ------FLKSLSQTQPSASRSTDVRVSKMTAGFEVIGGMEALKRTLQVSVLAGIRQSAAF 495
Query: 543 KAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
+G++ PKG+LLYGPPG KT +AK +A E+ FIA E+ S +VG +E+ I IF
Sbjct: 496 ARFGLSLPKGVLLYGPPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERFISRIF 555
Query: 603 RKARQAAPTVIFIDEIDAIAPRR----GTDVNRVTDRIINQLLTEMDGIQENAG---VVV 655
AR+ AP +IF+DEID++ RR G +V RI++ LLTEM+GI ++V
Sbjct: 556 DTARKNAPCLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQQHILV 615
Query: 656 IAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRT 715
+AATNRPD++D ALLRPGRFD+LI VPAPDEK+R + K+H++ MP ++V L+E+A RT
Sbjct: 616 VAATNRPDMIDDALLRPGRFDKLIHVPAPDEKSRLALLKLHSQRMPFHENVFLQEIAART 675
Query: 716 EGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSV 775
+ Y+GAD+ +C EAA+ A +R KA+EI ++DFE+ L K S+
Sbjct: 676 DRYSGADLCNLCNEAAIEAFQR---------DFKATEIE------LQDFEKVLTKQKSSL 720
Query: 776 SKETMEYYRKIQEQF 790
++ ++ Y K +F
Sbjct: 721 TQSQIDGYYKFAYRF 735
Score = 158 bits (395), Expect = 3e-37
Identities = 97/292 (33%), Positives = 158/292 (53%), Gaps = 39/292 (13%)
Query: 144 VTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLK 203
++ TQPS + TD +S +MT G +E IGG++ + ++ + ++
Sbjct: 446 LSQTQPSA----SRSTDVRVS---------KMTAG--FEVIGGMEALKRTLQVSVLAGIR 490
Query: 204 HPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEER 263
F + G+ PKGVLLYGPPG KT +AK +A EA+ FIA + E+ S Y G +E
Sbjct: 491 QSAAFARFGLSLPKGVLLYGPPGCAKTTVAKCLAKEADMTFIATSAAEVYSPYVGCAERF 550
Query: 264 LREVFKEAEENAPAIIFIDEIDAIAPKRSEVT----GEVEKRVVAQLLALMDGLKSRGK- 318
+ +F A +NAP +IF+DEID++ +R+ + G+V+ R+++ LL M+G+ G
Sbjct: 551 ISRIFDTARKNAPCLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTLLTEMNGIVGGGSQ 610
Query: 319 --VIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDD 376
++V+ ATNRPD ID AL RPGRFD+ I V PD + R +L++H++ MP + +
Sbjct: 611 QHILVVAATNRPDMIDDALLRPGRFDKLIHVPAPDEKSRLALLKLHSQRMPFHENVFLQE 670
Query: 377 VL-----------------KILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQ 411
+ +E F+R+ K T+I + E+V ++ + Q
Sbjct: 671 IAARTDRYSGADLCNLCNEAAIEAFQRDFKATEIELQDFEKVLTKQKSSLTQ 722
>gb|AAF58864.1| (AE003831) TER94 gene product [alt 1] [Drosophila melanogaster]
Length = 297
Score = 248 bits (626), Expect = 2e-64
Identities = 125/259 (48%), Positives = 171/259 (65%), Gaps = 12/259 (4%)
Query: 549 PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608
P +G+L YGPPG GKTLLAKA+A E QANFI+V+GPE+L+ W GESE N+R+IF KAR A
Sbjct: 3 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 62
Query: 609 APTVIFIDEIDAIAPRRGT---DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDIL 665
AP V+F DE+D+IA RG D DR+INQ+LTEMDG+ V +I ATNRPDI+
Sbjct: 63 APCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDII 122
Query: 666 DPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
DPA+LRPGR D+LI +P PD+K+R I K + R PLA +VDL +A+ T+G++GAD+
Sbjct: 123 DPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFSGADLTE 182
Query: 726 VCREAAMIAMRRALEKGIIK---------PGMKASEIRRLAKVTMKDFEEALRKIGPSVS 776
+C+ A +A+R+A+E I + M E + ++T FEEA++ SVS
Sbjct: 183 ICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVS 242
Query: 777 KETMEYYRKIQEQFKQARG 795
+ Y + +Q+RG
Sbjct: 243 DNDIRKYEMFAQTLQQSRG 261
Score = 166 bits (415), Expect = 1e-39
Identities = 84/201 (41%), Positives = 129/201 (63%), Gaps = 5/201 (2%)
Query: 213 IEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAE 272
++P +GVL YGPPG GKTLLAKA+ANE A FI++ GPE+++ ++GESE +R++F +A
Sbjct: 1 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 60
Query: 273 ENAPAIIFIDEIDAIAPKRSEVTGE---VEKRVVAQLLALMDGLKSRGKVIVIGATNRPD 329
AP ++F DE+D+IA R G+ RV+ Q+L MDG+ ++ V +IGATNRPD
Sbjct: 61 SAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPD 120
Query: 330 AIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGK 389
IDPA+ RPGR D+ I + +PD + R+ IL+ + R P+ + + K+ + F
Sbjct: 121 IIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAKVTQGFS-GAD 179
Query: 390 FTKIIDKAIE-EVNKSKEEEI 409
T+I +A + + ++ E EI
Sbjct: 180 LTEICQRACKLAIRQAIEAEI 200
>pir||F72504 probable 26S proteinase regulatory subunit APE2012 - Aeropyrum
pernix (strain K1) >gi|5105710|dbj|BAA81022.1|
(AP000063) 409aa long hypothetical 26S protease
regulatory subunit [Aeropyrum pernix]
Length = 409
Score = 247 bits (625), Expect = 3e-64
Identities = 133/272 (48%), Positives = 179/272 (64%), Gaps = 20/272 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P V + D+GGLE+ +E+ EAV P+K P F+ GI PPKG+LL+GPPGTGKTLLAK
Sbjct: 132 ERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAK 191
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA E++A FI V G E+++K++GE + +REIFR AR+ AP+++FIDEIDAIA +R
Sbjct: 192 AVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDI 251
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
GT +R R + QLL E+DG V VIAATNR D++DPA+LRPGRFDR+I VP P
Sbjct: 252 GTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPS 311
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
+ R EI +HTR +A DVDL+ +A+ TEG++GAD+ AV EA A+RR
Sbjct: 312 LRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSR----- 366
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
+TM D +A+ K+ ++ K
Sbjct: 367 ------------VITMDDMIKAVEKVKAALDK 386
Score = 219 bits (553), Expect = 8e-56
Identities = 139/379 (36%), Positives = 210/379 (54%), Gaps = 39/379 (10%)
Query: 74 RKNAGVGLGD-EVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRPVVRGDYIK 132
R N G D E+ + K +VR K ++ + + + ++ + +L+ P + +
Sbjct: 13 RHNGGHSERDVEIRILKDKVRSLTKEKISLQKELEYYKNEIT----KLLSPPYIEA--VV 66
Query: 133 VGVLGQELTFVVTATQPSGVVQITEFTDFNISEKP------------------------V 168
+ V+ V ++T P+ +V + D S KP V
Sbjct: 67 LEVIDDNRVVVKSSTGPNLIVNVAAGVDAR-SLKPGAIVALNNRGSTIVDVLPGRYDPLV 125
Query: 169 KEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTG 228
K +E V ++D+GGL++ I +I E + LP+K+P LF +LGI+PPKGVLL+GPPGTG
Sbjct: 126 KAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTG 185
Query: 229 KTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIA 288
KTLLAKAVA E A FI + G E+++K+ GE +RE+F+ A E AP+I+FIDEIDAIA
Sbjct: 186 KTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIA 245
Query: 289 PKRSEV--TGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREI 345
KR ++ +G+ E +R + QLLA +DG V VI ATNR D IDPA+ RPGRFDR I
Sbjct: 246 SKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRII 305
Query: 346 EVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSK 405
EV +P +GR EIL IHTR + PD + + K+ E F +++ + +
Sbjct: 306 EVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGS 365
Query: 406 E----EEIPQVLKKIDAEL 420
+++ + ++K+ A L
Sbjct: 366 RVITMDDMIKAVEKVKAAL 384
>gb|AAG09749.1|AF233277_1 (AF233277) peroxin-6 [Penicillium chrysogenum]
Length = 1459
Score = 246 bits (621), Expect = 8e-64
Identities = 155/390 (39%), Positives = 223/390 (56%), Gaps = 32/390 (8%)
Query: 433 LDELADVTHGFVGADLAALAREAA---MAALRRLIREGKIDFEAETIPREVL-----DEL 484
L +A T V DL + AA A L L K +E R+VL
Sbjct: 938 LGSIALKTAALVAGDLVDVVERAAGARTARLESLAEASKKISGSEVFVRDVLLAGGDGAR 997
Query: 485 KVTRRDFYEALKMVEPSALREV-LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFK 543
VT+ DF A++ + + ++PNV WDD+GGL +VK L E ++ PL+ PE F
Sbjct: 998 GVTKADFDAAVEAARKNFADSIGAPKIPNVGWDDVGGLTNVKDALVETIQLPLERPELF- 1056
Query: 544 AYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFR 603
A G+ GIL YGPPGTGKTLLAKA+ATE NF +V+GPE+L+ ++GESE N+R +F+
Sbjct: 1057 AKGMKKRSGILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELLNMYIGESEANVRRVFQ 1116
Query: 604 KARQAAPTVIFIDEIDAIAPRRGT--DVNRVTDRIINQLLTEMDGI----QENAGVVVIA 657
+AR A P V+F DE+D++AP+RG D V DRI++QLL E+DG+ + + GV VI
Sbjct: 1117 RARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIG 1176
Query: 658 ATNRPDILDPALLRPGRFDRLILVPAPD-EKARFEIFKVHTRGMPLADDVDLKELARRTE 716
ATNRPD+LD ALLRPGRFD+++ + D + + I + TR L DV L +A +
Sbjct: 1177 ATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLP 1236
Query: 717 -GYTGADIAAVCREAAMIAMRR----------ALEKGIIKPGM----KASEIRRLAKVTM 761
YTGAD+ A+C +A + A+ R AL G + A++ VT
Sbjct: 1237 LTYTGADLYALCSDAMLKAITRKATAVDEKINALPNGPVSTAWFFDHLATKEDVNVMVTE 1296
Query: 762 KDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+DF A ++ PSVS + +E++ +I++ F+
Sbjct: 1297 EDFLSAQGELVPSVSAKELEHFERIRQTFE 1326
Score = 187 bits (471), Expect = 3e-46
Identities = 99/210 (47%), Positives = 141/210 (67%), Gaps = 8/210 (3%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V ++D+GGL +V + + E I+LPL+ PELF K G++ G+L YGPPGTGKTLLAKA+A
Sbjct: 1027 VGWDDVGGLTNVKDALVETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIAT 1085
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TG 296
E + F ++ GPE+++ Y GESE +R VF+ A + P ++F DE+D++APKR +G
Sbjct: 1086 EFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSG 1145
Query: 297 EVEKRVVAQLLALMDGL----KSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
V R+V+QLLA +DG+ ++ G V VIGATNRPD +D AL RPGRFD+ + +GV D
Sbjct: 1146 GVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDT 1205
Query: 353 QGRK-EILQIHTRGMPIEPDFRKDDVLKIL 381
++ IL+ TR + PD D V + L
Sbjct: 1206 HRKQATILEALTRKFALHPDVSLDRVAEQL 1235
>sp|O67077|FTSH_AQUAE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446574|pir||B70381 cell
division protein FtsH - Aquifex aeolicus
>gi|2983448|gb|AAC07029.1| (AE000714) cell division
protein FtsH [Aquifex aeolicus]
Length = 634
Score = 245 bits (618), Expect = 2e-63
Identities = 130/285 (45%), Positives = 182/285 (63%), Gaps = 22/285 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P V + D+ G+E+VK+E++E +E+ LK P F+ G PPKG+LLYG PG GKTLLAK
Sbjct: 148 EKPKVTFKDVAGIEEVKEEVKEIIEY-LKDPVKFQKLGGRPPKGVLLYGEPGVGKTLLAK 206
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT- 627
A+A E+ FI+V G + + +VG +R++F A++ AP +IFIDEIDA+ RG
Sbjct: 207 AIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFIDEIDAVGRARGAI 266
Query: 628 ---DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAP 684
+ ++ +NQLL EMDG + G++VIAATNRPDILDPALLRPGRFDR I +P P
Sbjct: 267 PVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKP 326
Query: 685 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGII 744
D + R+EI KVH R LA DVDL+ +AR T G+TGAD+ + EAA++A R+ E
Sbjct: 327 DVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKE---- 382
Query: 745 KPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQ 789
++TM++ EEAL +I + ++ M K +E+
Sbjct: 383 -------------EITMEEIEEALDRITMGLERKGMTISPKEKEK 414
Score = 195 bits (491), Expect = 1e-48
Identities = 114/277 (41%), Positives = 164/277 (59%), Gaps = 12/277 (4%)
Query: 148 QPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPEL 207
Q SG + +F S V EK VT++D+ G+++V E+++E+IE LK P
Sbjct: 124 QMSGGGNVNRAFNFGKSRAKVYIEEKPK---VTFKDVAGIEEVKEEVKEIIEY-LKDPVK 179
Query: 208 FEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREV 267
F+KLG PPKGVLLYG PG GKTLLAKA+A EA+ FI+++G + + + G R+R++
Sbjct: 180 FQKLGGRPPKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDL 239
Query: 268 FKEAEENAPAIIFIDEIDAIAPKRSEVT----GEVEKRVVAQLLALMDGLKSRGKVIVIG 323
F+ A+++AP IIFIDEIDA+ R + + ++ + QLL MDG + +IVI
Sbjct: 240 FETAKKHAPCIIFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIA 299
Query: 324 ATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILED 383
ATNRPD +DPAL RPGRFDR+I + PD +GR EIL++H R + D + V +
Sbjct: 300 ATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPG 359
Query: 384 FKREGKFTKIIDKAIEEVNKSKE----EEIPQVLKKI 416
F + + A+ K KE EEI + L +I
Sbjct: 360 FTGADLENLLNEAALLAARKGKEEITMEEIEEALDRI 396
>dbj|BAA96090.1| (AB032368) FtsH [Thermus thermophilus]
Length = 624
Score = 245 bits (618), Expect = 2e-63
Identities = 131/278 (47%), Positives = 180/278 (64%), Gaps = 21/278 (7%)
Query: 506 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTL 565
VL E P V + D+ G E+ K+EL+E VE+ LK P F G PKG+LL GPPG GKT
Sbjct: 146 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 204
Query: 566 LAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR 625
LA+AVA E++ FI G + + +VG +R++F A++ AP ++FIDEIDA+ +R
Sbjct: 205 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 264
Query: 626 GTDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVP 682
G+ V N ++ +NQLL EMDG +++ +VV+AATNRPDILDPALLRPGRFDR I +
Sbjct: 265 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 324
Query: 683 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKG 742
APD K R +I ++H RG PLA+DVDL LA+RT G+ GAD+ + EAA++A R
Sbjct: 325 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR------ 378
Query: 743 IIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
E RR K+TMKD EEA ++ +K+++
Sbjct: 379 ---------EGRR--KITMKDLEEAADRVMMGPAKKSL 405
Score = 185 bits (465), Expect = 2e-45
Identities = 90/196 (45%), Positives = 132/196 (66%), Gaps = 4/196 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT++D+ G ++ E+++E++E LK+P F ++G PKGVLL GPPG GKT LA+AVA
Sbjct: 153 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 211
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG-- 296
EA FI +G + + + G R+R++F+ A+ +AP I+FIDEIDA+ KR G
Sbjct: 212 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 271
Query: 297 -EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ ++ + QLL MDG + ++V+ ATNRPD +DPAL RPGRFDR+I + PD +GR
Sbjct: 272 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 331
Query: 356 KEILQIHTRGMPIEPD 371
++IL+IH RG P+ D
Sbjct: 332 EQILRIHARGKPLAED 347
>gb|AAG19042.1| (AE005003) ATP-dependent 26S proteinase regulatory subunit 4
homolog; PrrIV2 [Halobacterium sp. NRC-1]
Length = 368
Score = 242 bits (612), Expect = 9e-63
Identities = 133/273 (48%), Positives = 183/273 (66%), Gaps = 15/273 (5%)
Query: 479 EVLDELKVT-----RRDFYEALKMV----EPSALREVLIEV---PNVHWDDIGGLEDVKQ 526
EV DEL+ T R +L +V + + +R ++EV P+V ++DIGGL+D +
Sbjct: 61 EVTDELRATLEPGSRVAVNNSLSVVRQLDDEADVRARVMEVDDSPDVGYEDIGGLDDQLR 120
Query: 527 ELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEI 586
E+RE VE P+K P F+ GI PP G+LL+GPPGTGKTL+AKAVA+++ A+FI + G E+
Sbjct: 121 EVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVASQTDASFIKMAGSEL 180
Query: 587 LSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTE 643
+ K++GE K +R++F+ AR P V+FIDEIDAIA +R T + R + QLL+E
Sbjct: 181 VHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLSE 240
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
MDG E + +IAATNR D+LD A+LRPGRFDRLI VP P+ R +IF++HTR M +A
Sbjct: 241 MDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVA 300
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAMIAMR 736
D VD ELA T +GAD+ A+C EA M A+R
Sbjct: 301 DSVDFGELAADTGDLSGADVKAICTEAGMFAIR 333
Score = 207 bits (521), Expect = 4e-52
Identities = 104/193 (53%), Positives = 143/193 (73%), Gaps = 3/193 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V YEDIGGL D + ++RE +ELP+K P LFE +GI PP GVLL+GPPGTGKTL+AKAVA+
Sbjct: 107 VGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVAS 166
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTG 296
+ +A FI + G E++ K+ GE + +R++F+ A ++ PA++FIDEIDAIA KR S+ +G
Sbjct: 167 QTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKTSG 226
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + QLL+ MDG RG + +I ATNR D +D A+ RPGRFDR IEV P+ GR
Sbjct: 227 DAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGR 286
Query: 356 KEILQIHTRGMPI 368
++I +IHTR M +
Sbjct: 287 EKIFRIHTRAMNV 299
>gb|AAF22523.1|AF123392_1 (AF123392) 26S proteasome AAA-ATPase subunit RPT3 [Arabidopsis
thaliana] >gi|8777330|dbj|BAA96920.1| (AB019228) 26S
proteasome AAA-ATPase subunit RPT3 [Arabidopsis
thaliana]
Length = 408
Score = 240 bits (607), Expect = 4e-62
Identities = 146/395 (36%), Positives = 218/395 (54%), Gaps = 19/395 (4%)
Query: 374 KDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLL 433
++D+ L+ +R+ +FT I ++ +++ K+ + E L + E+ L+
Sbjct: 27 EEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRE----LLRAQEEVKRIQSVPLVIGQF 82
Query: 434 DELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYE 493
E+ D +G VG+ + ++ + R + + ++D L
Sbjct: 83 MEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 142
Query: 494 ALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGI 553
L E P+V ++DIGG + KQE+REAVE PL + E +K GI PP+G+
Sbjct: 143 LLSQSEK----------PDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 192
Query: 554 LLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVI 613
LLYGPPGTGKT+LAKAVA + A FI V G E + K++GE + +R++FR A++ AP +I
Sbjct: 193 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAII 252
Query: 614 FIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALL 670
FIDE+DAIA R T +R RI+ +LL +MDG + V VI ATNR D LDPALL
Sbjct: 253 FIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 312
Query: 671 RPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREA 730
RPGR DR I P PD + + +F+V T M L+D+VDL++ R + + A+IAA+C+EA
Sbjct: 313 RPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEA 372
Query: 731 AMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFE 765
M A+R+ + +I P R K DFE
Sbjct: 373 GMHAVRK--NRYVILPKDFEKGYRANVKKPDTDFE 405
Score = 200 bits (504), Expect = 4e-50
Identities = 117/306 (38%), Positives = 180/306 (58%), Gaps = 19/306 (6%)
Query: 83 DEVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHER--LVGRPVVRGDYIKV-GVLGQE 139
++ +++ +R ++V + P+ G+ F+E + + +VG Y+++ + +E
Sbjct: 54 EQKNLKRELLRAQEEVKRIQSVPLVIGQ-FMEMVDQNNGIVGSTTGSNYYVRILSTINRE 112
Query: 140 LTFVVTATQPSGVVQITEFTDFNISEKP------VKEVEKRMTTGVTYEDIGGLKDVIEK 193
L +PS V + ++ + P + + + V+Y DIGG ++
Sbjct: 113 LL------KPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQE 166
Query: 194 IREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIM 253
IRE +ELPL H EL++++GI+PP+GVLLYGPPGTGKT+LAKAVAN A FI + G E +
Sbjct: 167 IREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226
Query: 254 SKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK---RVVAQLLALM 310
KY GE +R+VF+ A+ENAPAIIFIDE+DAIA R + ++ R++ +LL M
Sbjct: 227 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQM 286
Query: 311 DGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEP 370
DG V VI ATNR D +DPAL RPGR DR+IE +PDR+ ++ + Q+ T M +
Sbjct: 287 DGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSD 346
Query: 371 DFRKDD 376
+ +D
Sbjct: 347 EVDLED 352
>sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (LET1 PROTEIN)
>gi|626074|pir||S45176 26S proteinase regulatory subunit
8 homolog - fission yeast (Schizosaccharomyces pombe)
>gi|406051|gb|AAA61615.1| (U02280) Let1
[Schizosaccharomyces pombe] >gi|4106689|emb|CAA22628.1|
(AL035065) 26s protease regulatory subunit 8 homolog
[Schizosaccharomyces pombe]
Length = 403
Score = 237 bits (599), Expect = 3e-61
Identities = 138/373 (36%), Positives = 215/373 (56%), Gaps = 33/373 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L++++A+ + RL+ + + +L +VG + + + + + EGK
Sbjct: 36 QNLRRLEAQRNGLNARVRLLREEI-QLLQEPGSYVGEVIKTMGKNKVLVKVHP---EGKY 91
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +E+ ++V R D Y+ +K+ V+P ++ ++P+ ++ +GGLE
Sbjct: 92 VVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLE 151
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F++ GI PKGILLYGPPGTGKTLLA+AVA + FI V
Sbjct: 152 KQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVS 211
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR----GTDVNRVTDRIIN 638
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G + R +
Sbjct: 212 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTML 271
Query: 639 QLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTR 698
+LL ++DG + + VI ATNR DILDPALLRPGR DR I P P +AR EI ++H+R
Sbjct: 272 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSR 331
Query: 699 GMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK 758
M L +DLK +A + G +GA++ VC EA M A+R R
Sbjct: 332 SMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALR-----------------ERRVH 374
Query: 759 VTMKDFEEALRKI 771
VT +DFE A+ K+
Sbjct: 375 VTQEDFELAVAKV 387
Score = 204 bits (513), Expect = 4e-51
Identities = 104/192 (54%), Positives = 139/192 (72%), Gaps = 6/192 (3%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE +GGL+ I++I+E+IELP+KHPELFE LGI PKG+LLYGPPGTGKTLLA+AVA+
Sbjct: 143 TYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHH 202
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG--- 296
+ FI ++G E++ KY GE +RE+F A E+AP+IIF+DEID+I RS+ +G
Sbjct: 203 TDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSG 262
Query: 297 --EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354
EV+ R + +LL +DG ++ + VI ATNR D +DPAL RPGR DR+IE P +
Sbjct: 263 DSEVQ-RTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEA 321
Query: 355 RKEILQIHTRGM 366
R EIL+IH+R M
Sbjct: 322 RAEILRIHSRSM 333
>pir||T31466 cell-division protein homolog ftsH - Heliobacillus mobilis
>gi|3820564|gb|AAC84037.1| (AF080002) ATP-dependent zinc
metallopeptidase FtsH [Heliobacillus mobilis]
Length = 601
Score = 237 bits (599), Expect = 3e-61
Identities = 124/286 (43%), Positives = 181/286 (62%), Gaps = 23/286 (8%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V ++D+ G ++VK+EL+E V++ LK+P+ F G PKG+LL+GPPGTGKTLLA+AVA
Sbjct: 155 VTFEDVAGADEVKEELQEVVDF-LKHPKKFVELGAKIPKGVLLFGPPGTGKTLLARAVAG 213
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRV 632
E+ F ++ G + + +VG +R++F +A++ +P ++FIDEIDA+ +RG +
Sbjct: 214 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGG 273
Query: 633 TD---RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
D + +NQLL EMDG N G+++IAATNRPDILDPALLRPGRFDR I+V PD + R
Sbjct: 274 HDEREQTLNQLLVEMDGFSANEGIIIIAATNRPDILDPALLRPGRFDRQIVVDRPDIRGR 333
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMK 749
EI VH +G PL + +DL LARRT G+TGAD+A + EAA++A RR +
Sbjct: 334 KEILGVHVKGKPLDETIDLDVLARRTPGFTGADLANMVNEAALLAARRGTK--------- 384
Query: 750 ASEIRRLAKVTMKDFEEALRKI--GPSVSKETMEYYRKIQEQFKQA 793
KV M + E+A+ ++ GP + + K + +A
Sbjct: 385 --------KVGMHEMEDAIERVIAGPEKKARVISEFEKKLVSYHEA 422
Score = 198 bits (497), Expect = 3e-49
Identities = 109/277 (39%), Positives = 169/277 (60%), Gaps = 13/277 (4%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VT+ED+ G +V E+++E+++ LKHP+ F +LG + PKGVLL+GPPGTGKTLLA+AVA
Sbjct: 155 VTFEDVAGADEVKEELQEVVDF-LKHPKKFVELGAKIPKGVLLFGPPGTGKTLLARAVAG 213
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG-- 296
EA F +I+G + + + G R+R++F++A++N+P I+FIDEIDA+ +R G
Sbjct: 214 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNSPCIVFIDEIDAVGRQRGAGLGGG 273
Query: 297 -EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ ++ + QLL MDG + +I+I ATNRPD +DPAL RPGRFDR+I V PD +GR
Sbjct: 274 HDEREQTLNQLLVEMDGFSANEGIIIIAATNRPDILDPALLRPGRFDRQIVVDRPDIRGR 333
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEE----EIPQ 411
KEIL +H +G P++ D + + F + + A+ + ++ E+
Sbjct: 334 KEILGVHVKGKPLDETIDLDVLARRTPGFTGADLANMVNEAALLAARRGTKKVGMHEMED 393
Query: 412 VLKKIDAELYDEVKTRLI---DKLLDELADVTHGFVG 445
++++ A E K R+I +K L + H VG
Sbjct: 394 AIERVIAG--PEKKARVISEFEKKLVSYHEAGHALVG 428
>gb|AAF69154.1|AC007915_6 (AC007915) F27F5.8 [Arabidopsis thaliana]
Length = 399
Score = 237 bits (599), Expect = 3e-61
Identities = 131/295 (44%), Positives = 184/295 (61%), Gaps = 8/295 (2%)
Query: 468 KIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVP-NVHWDDIGGLEDVKQ 526
K+D E T V+ L +T AL + +L E P N+ + +GGL D +
Sbjct: 92 KVDKEKLTSGTRVV--LDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIR 149
Query: 527 ELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEI 586
ELRE++E PL PE F GI PPKG+LLYGPPGTGKTLLA+A+A+ ANF+ V I
Sbjct: 150 ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 209
Query: 587 LSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTE 643
+ K++GES + IRE+F AR+ P +IF+DEIDAI RR GT +R R + +LL +
Sbjct: 210 IDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 269
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
+DG + V +I ATNRPD+LDPALLRPGR DR I +P P+E++R EI K+H G+
Sbjct: 270 LDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKH 329
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK 758
++D + + + EG+ GAD+ +C EA M A+R + I + MKA +R+L++
Sbjct: 330 GEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKA--VRKLSE 382
Score = 204 bits (514), Expect = 3e-51
Identities = 106/209 (50%), Positives = 144/209 (68%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
++Y +GGL D I ++RE IELPL +PELF ++GI+PPKGVLLYGPPGTGKTLLA+A+A+
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 195
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+A F+ + I+ KY GES +RE+F A E+ P IIF+DEIDAI +R SE T
Sbjct: 196 NIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSA 255
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL +DG GKV +I ATNRPD +DPAL RPGR DR+IE+ +P+ Q R
Sbjct: 256 DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 315
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
EIL+IH G+ + + ++K+ E F
Sbjct: 316 MEILKIHASGIAKHGEIDYEAIVKLGEGF 344
>dbj|BAB17625.1| (AB033536) 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa]
Length = 400
Score = 237 bits (599), Expect = 3e-61
Identities = 134/320 (41%), Positives = 186/320 (57%), Gaps = 23/320 (7%)
Query: 468 KIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVP-NVHWDDIGGLEDVKQ 526
K+D E T V+ L +T L + +L E P NV + +GGL D +
Sbjct: 93 KVDKEKLTSGTRVV--LDMTTLTIMRTLPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIR 150
Query: 527 ELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEI 586
ELRE++E PL PE F GI PPKG+LLYGPPGTGKTLLA+A+A+ ANF+ + I
Sbjct: 151 ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAI 210
Query: 587 LSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTE 643
+ K++GES + IRE+F AR P +IF+DEIDAI RR GT +R R + +LL +
Sbjct: 211 IDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 270
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
+DG E V +I ATNRPD+LDPALLRPGR DR I +P P+E+AR E+ K+H G+
Sbjct: 271 LDGFDELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKH 330
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKD 763
++D + + + EG+ GAD+ VC EA M A+R + V +D
Sbjct: 331 GEIDYEAVVKLAEGFNGADLRNVCTEAGMAAIRAERD-----------------YVVHED 373
Query: 764 FEEALRKIGPSVSKETMEYY 783
F +A+RK+ + E+ +Y
Sbjct: 374 FMKAVRKLNDAKKLESSAHY 393
Score = 205 bits (516), Expect = 2e-51
Identities = 107/209 (51%), Positives = 144/209 (68%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V+Y +GGL D I ++RE IELPL +PELF ++GI+PPKGVLLYGPPGTGKTLLA+A+A+
Sbjct: 137 VSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 196
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+A F+ I I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 197 NIDANFLKIVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA 256
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL +DG GKV +I ATNRPD +DPAL RPGR DR+IE+ +P+ Q R
Sbjct: 257 DREIQRTLMELLNQLDGFDELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQAR 316
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
E+L+IH G+ + + V+K+ E F
Sbjct: 317 MEVLKIHAAGIAKHGEIDYEAVVKLAEGF 345
>gb|AAF91245.1|AF227501_1 (AF227501) proteasome regulatory ATPase subunit 3 [Trypanosoma
brucei]
Length = 403
Score = 236 bits (597), Expect = 5e-61
Identities = 124/276 (44%), Positives = 172/276 (61%), Gaps = 20/276 (7%)
Query: 511 PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAV 570
PNV + D+GGL+ KQE+REAVE PL + + GI PP+G+LLYGPPGTGKT+L KAV
Sbjct: 144 PNVTYSDVGGLDMQKQEIREAVELPLTHASLYDQIGIDPPRGVLLYGPPGTGKTMLVKAV 203
Query: 571 ATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GT 627
A + A FI+V G E + K++GE + +R++FR AR+ AP +IFIDE+D+IA +R T
Sbjct: 204 AHHTNAAFISVVGSEFVQKYLGEGPRKVRDVFRLARENAPAIIFIDEVDSIATKRFDAQT 263
Query: 628 DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 687
+R R++ +LL +MDG + V VI ATNR D LDPA+LRPGR DR I P PD +
Sbjct: 264 GADREVQRVLIELLAQMDGFDQTTNVKVIMATNRWDTLDPAILRPGRLDRKIEFPYPDRR 323
Query: 688 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPG 747
+ +F+V T M L+ +VDL+E R E TGADI ++C EA M+A+R+ + ++ P
Sbjct: 324 QKRLVFQVCTSRMNLSPEVDLEEFVTRPERLTGADIQSICHEAGMLAVRK--NRYVVLP- 380
Query: 748 MKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
KD E A R + E ++Y
Sbjct: 381 --------------KDIESAYRTVTRKTGDEQYDFY 402
Score = 207 bits (521), Expect = 4e-52
Identities = 105/213 (49%), Positives = 143/213 (66%), Gaps = 3/213 (1%)
Query: 162 NISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLL 221
N + V + K VTY D+GGL ++IRE +ELPL H L++++GI+PP+GVLL
Sbjct: 129 NEIDSAVHVLRKEDRPNVTYSDVGGLDMQKQEIREAVELPLTHASLYDQIGIDPPRGVLL 188
Query: 222 YGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFI 281
YGPPGTGKT+L KAVA+ NA FI++ G E + KY GE ++R+VF+ A ENAPAIIFI
Sbjct: 189 YGPPGTGKTMLVKAVAHHTNAAFISVVGSEFVQKYLGEGPRKVRDVFRLARENAPAIIFI 248
Query: 282 DEIDAIAPKRSEVTGEVEK---RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRP 338
DE+D+IA KR + ++ RV+ +LLA MDG V VI ATNR D +DPA+ RP
Sbjct: 249 DEVDSIATKRFDAQTGADREVQRVLIELLAQMDGFDQTTNVKVIMATNRWDTLDPAILRP 308
Query: 339 GRFDREIEVGVPDRQGRKEILQIHTRGMPIEPD 371
GR DR+IE PDR+ ++ + Q+ T M + P+
Sbjct: 309 GRLDRKIEFPYPDRRQKRLVFQVCTSRMNLSPE 341
>gb|AAG09748.1|AF233276_1 (AF233276) peroxin-1 [Penicillium chrysogenum]
Length = 1213
Score = 236 bits (596), Expect = 7e-61
Identities = 171/583 (29%), Positives = 283/583 (48%), Gaps = 60/583 (10%)
Query: 219 VLLYGPPGTGKTLLAKAVANEA------NAYFIAINGPEIMSKYYGESEERLREVFKEAE 272
+L+ G G GKT L +A+ N + + +E L +F A
Sbjct: 556 ILVTGGLGAGKTALTHLLAHRLRRDHLFNVKYFSCRKLVTDETRISNIKETLNRLFMSAS 615
Query: 273 ENA----PAIIFIDEIDAIAPKRSEVT-------GEVEKRVVAQLLALMDGLKSRGKVIV 321
A +++ ++++D + P +E+ V+ ++ L S V++
Sbjct: 616 WCARLGGQSVVILEDLDKLCPAETELQVGGDNGRSRQNSEVICSMVREYCALNS--SVVL 673
Query: 322 IGATNRPDAIDPALRRPGRFDREI-EVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKI 380
+ ++++ + G REI + PD++GR+ ++
Sbjct: 674 LATAQAKESLNNVIIG-GHVVREIINMRAPDKEGRR----------------------RV 710
Query: 381 LEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLD--ELAD 438
LE E K T+ + + + S ++ +I + ++ ELA
Sbjct: 711 LEKLTSEDKPTESSNGHVRATSSSTQDSWLDPSNPGSRPSSSGGDGFVIGRDVEYLELAG 770
Query: 439 VTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMV 498
T G++ DL L A AL R + + + T+ + DF ALK
Sbjct: 771 KTDGYMPGDLVLLVARARNEALIRSVSDLTATSKMITLGLQ----------DFESALKDF 820
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
P++LR V + + +GGL + ++ L E +++P KY F + G+LLYG
Sbjct: 821 TPASLRNVTLTSSTTTFSSVGGLFETRKMLLETLQYPTKYAPIFAQCPLRLRSGLLLYGF 880
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PG GKT+LA AVA E NFI+V+GPEIL+K++G SEK++R++F +A+ A P V+F DE
Sbjct: 881 PGCGKTMLASAVAGECGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCVLFFDEF 940
Query: 619 DAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRL 678
D+IAP+RG D VTDR++NQLLT+MDG + +GV V+AAT+RPD++DPALLRPGR D+
Sbjct: 941 DSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGLSGVYVLAATSRPDLIDPALLRPGRLDKS 1000
Query: 679 ILVPAPDEKARFEIFKVHTRGMPLADDVD--LKELARRTEGYTGADIAAVCREAAMIAMR 736
+L P+ R +I + + ++D+V L ++A +TEG++GAD+ AV A + A+
Sbjct: 1001 LLCDMPNHADRVDIIRSVAEKLKMSDEVTSRLGDIATQTEGFSGADLQAVVYNAHLEAVH 1060
Query: 737 RAL---EKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVS 776
AL KP K+ +K ++ + + SVS
Sbjct: 1061 DALGDHSTDTAKPNAKSKSANASSKSFIQFLYSSSEEASGSVS 1103
Score = 159 bits (399), Expect = 9e-38
Identities = 78/181 (43%), Positives = 115/181 (63%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
T+ +GGL + + + E ++ P K+ +F + + G+LLYG PG GKT+LA AVA E
Sbjct: 836 TFSSVGGLFETRKMLLETLQYPTKYAPIFAQCPLRLRSGLLLYGFPGCGKTMLASAVAGE 895
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVE 299
FI++ GPEI++KY G SE+ +R++F+ A+ P ++F DE D+IAPKR + V
Sbjct: 896 CGLNFISVKGPEILNKYIGASEKSVRDLFERAQAARPCVLFFDEFDSIAPKRGHDSTGVT 955
Query: 300 KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEIL 359
RVV QLL MDG + V V+ AT+RPD IDPAL RPGR D+ + +P+ R +I+
Sbjct: 956 DRVVNQLLTQMDGAEGLSGVYVLAATSRPDLIDPALLRPGRLDKSLLCDMPNHADRVDII 1015
Query: 360 Q 360
+
Sbjct: 1016 R 1016
>sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|7446577|pir||S76378 cell
division protein ftsH-1 - Synechocystis sp. (strain PCC
6803) >gi|1001602|dbj|BAA10230.1| (D64000) cell division
protein FtsH [Synechocystis sp.]
Length = 627
Score = 236 bits (596), Expect = 7e-61
Identities = 115/228 (50%), Positives = 161/228 (70%), Gaps = 4/228 (1%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V +DD+ G+++ K+EL+E V + LK PE F A G PKG+LL GPPGTGKTLLAKA+A
Sbjct: 169 VMFDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 227
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV--- 629
E+ F ++ G E + +VG +R++F+KA++ AP +IFIDEIDA+ +RG +
Sbjct: 228 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGG 287
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
N ++ +NQLLTEMDG + N G+++IAATNRPD+LD AL+RPGRFDR ++V APD R
Sbjct: 288 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGR 347
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
EI +VH R LA +V + +ARRT G++GAD+A + EAA++ RR
Sbjct: 348 KEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARR 395
Score = 199 bits (500), Expect = 1e-49
Identities = 110/276 (39%), Positives = 161/276 (57%), Gaps = 8/276 (2%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
TGV ++D+ G+ + E+++E++ LK PE F +G + PKGVLL GPPGTGKTLLAKA+
Sbjct: 167 TGVMFDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAI 225
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
A EA F +I+G E + + G R+R++FK+A+ENAP +IFIDEIDA+ +R G
Sbjct: 226 AGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIG 285
Query: 297 ---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
+ ++ + QLL MDG + +I+I ATNRPD +D AL RPGRFDR++ V PD
Sbjct: 286 GGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYS 345
Query: 354 GRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEE-EIPQV 412
GRKEIL++H R + P+ D + + F + + AI + K + ++
Sbjct: 346 GRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEI 405
Query: 413 LKKIDAELYDEVKTRLID---KLLDELADVTHGFVG 445
+D + T L+D K L +V H VG
Sbjct: 406 DDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVG 441
>pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (strain K1)
>gi|5104629|dbj|BAA79944.1| (AP000060) 384aa long
hypothetical p60 katanin [Aeropyrum pernix]
Length = 384
Score = 236 bits (596), Expect = 7e-61
Identities = 153/387 (39%), Positives = 221/387 (56%), Gaps = 30/387 (7%)
Query: 413 LKKIDAELYDEVKTRLID--KLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKID 470
L +DAE + + +++ K ++ L ++ + LA + R +A RR +++ ++
Sbjct: 16 LAAVDAEKRGDYEAAIVNLNKAIEYLTEIVRNYPDYPLAHIYRRL-IAQYRRKVKD--LE 72
Query: 471 FEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELRE 530
+A IP DE+ V D E E A VL E P+V +DDI GLE+ K+ +RE
Sbjct: 73 KKARMIPASG-DEVYV---DTQEKDGGGEDEAPEFVLKEKPSVTFDDIAGLEEAKKAIRE 128
Query: 531 AVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKW 590
A+ +P+K P+ F + P+GILLYGPPGTGKT+LA AVA E F+ V I+SKW
Sbjct: 129 AIVFPVKRPDLFP---LGWPRGILLYGPPGTGKTMLASAVANEIDGEFLYVDAANIMSKW 185
Query: 591 VGESEKNIREIF----RKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDG 646
+GE EKN++++F KA++ P VIFIDE+DA+ G++V R+ NQ L EMDG
Sbjct: 186 LGEGEKNVKKLFNYARNKAKEGKPVVIFIDEVDALLGVHGSEVGGEV-RVRNQFLKEMDG 244
Query: 647 IQENAG---VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
IQ+ V VIAATN+P LD +R RF + I VP P + R + +++TR + LA
Sbjct: 245 IQDKGSRLHVYVIAATNKPWKLDEPFIR--RFQKRIYVPLPSRETRKRMLEMYTRKLRLA 302
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKD 763
DVDL LA EGYTG+DIA + REA M +R EKG + + +TM D
Sbjct: 303 GDVDLDRLAEMLEGYTGSDIADIVREAYMATVRELFEKGKVDGEPR--------PITMSD 354
Query: 764 FEEALRKIGPSVSKETMEYYRKIQEQF 790
F+E LR+ PSV ++ Y + E+F
Sbjct: 355 FQEILRRRRPSVDHRLLKTYEEWTERF 381
Score = 159 bits (398), Expect = 1e-37
Identities = 97/236 (41%), Positives = 143/236 (60%), Gaps = 25/236 (10%)
Query: 157 EFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP 216
E +F + EKP VT++DI GL++ + IRE I P+K P+LF + P
Sbjct: 99 EAPEFVLKEKP----------SVTFDDIAGLEEAKKAIREAIVFPVKRPDLFP---LGWP 145
Query: 217 KGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVF----KEAE 272
+G+LLYGPPGTGKT+LA AVANE + F+ ++ IMSK+ GE E+ ++++F +A+
Sbjct: 146 RGILLYGPPGTGKTMLASAVANEIDGEFLYVDAANIMSKWLGEGEKNVKKLFNYARNKAK 205
Query: 273 ENAPAIIFIDEIDA-IAPKRSEVTGEVEKRVVAQLLALMDGLKSRGK---VIVIGATNRP 328
E P +IFIDE+DA + SEV GEV RV Q L MDG++ +G V VI ATN+P
Sbjct: 206 EGKPVVIFIDEVDALLGVHGSEVGGEV--RVRNQFLKEMDGIQDKGSRLHVYVIAATNKP 263
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+D R RF + I V +P R+ RK +L+++TR + + D D + ++LE +
Sbjct: 264 WKLDEPFIR--RFQKRIYVPLPSRETRKRMLEMYTRKLRLAGDVDLDRLAEMLEGY 317
>gb|AAF22524.1|AF123393_1 (AF123393) 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana] >gi|9758590|dbj|BAB09203.1| (AB008264) 26S
proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana]
Length = 399
Score = 236 bits (596), Expect = 7e-61
Identities = 130/295 (44%), Positives = 183/295 (61%), Gaps = 8/295 (2%)
Query: 468 KIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVP-NVHWDDIGGLEDVKQ 526
K+D E T V+ L +T AL + +L E P N+ + +GGL D +
Sbjct: 92 KVDKEKLTSGTRVV--LDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIR 149
Query: 527 ELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEI 586
ELRE++E PL PE F GI PPKG+LLYGPPGTGKTLLA+A+A+ ANF+ V I
Sbjct: 150 ELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAI 209
Query: 587 LSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTE 643
+ K++GES + IRE+F AR+ P +IF+DEIDAI RR GT +R R + +LL +
Sbjct: 210 IDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 269
Query: 644 MDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLA 703
+DG V +I ATNRPD+LDPALLRPGR DR I +P P+E++R +I K+H G+
Sbjct: 270 LDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKH 329
Query: 704 DDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK 758
++D + + + EG+ GAD+ +C EA M A+R + I + MKA +R+L++
Sbjct: 330 GEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKA--VRKLSE 382
Score = 205 bits (515), Expect = 2e-51
Identities = 105/209 (50%), Positives = 145/209 (69%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
++Y +GGL D I ++RE IELPL +PELF ++GI+PPKGVLLYGPPGTGKTLLA+A+A+
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIAS 195
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+A F+ + I+ KY GES +RE+F A E+ P IIF+DEIDAI +R SE T
Sbjct: 196 NIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSA 255
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL +DG + GKV +I ATNRPD +DPAL RPGR DR+IE+ +P+ Q R
Sbjct: 256 DREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR 315
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+IL+IH G+ + + ++K+ E F
Sbjct: 316 MDILKIHAAGIAKHGEIDYEAIVKLAEGF 344
>emb|CAA56963.1| (X81072) YTA7 [Saccharomyces cerevisiae]
Length = 1379
Score = 236 bits (595), Expect = 9e-61
Identities = 126/287 (43%), Positives = 186/287 (63%), Gaps = 9/287 (3%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
NV++DDIGGL++ +L+E V PL YPE ++ + ITPP+G+L +GPPGTGKTL+A+A+A
Sbjct: 409 NVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALA 468
Query: 572 T-----ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
E + F +G +ILSKWVGE+E+ +R +F +A++ P++IF DEID +AP R
Sbjct: 469 ASCSSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRS 528
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ I++ LL MDG+ V+VI ATNRPD +DPAL RPGRFDR P PD
Sbjct: 529 SKQEQIHASIVSTLLALMDGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDV 588
Query: 687 KARFEIFKVHTR--GMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGII 744
KARF+I ++ TR PL+ + + +LA T+GY GAD+ ++C EAA+I+++R+ + I
Sbjct: 589 KARFKILQIQTRKWSSPLSTNF-IDKLAFLTKGYGGADLRSLCTEAALISIQRSFPQ-IY 646
Query: 745 KPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+ K KV + DF AL+KI PS ++ T + + E K
Sbjct: 647 RSNDKLLVDPSKIKVKVSDFMLALKKIVPSSARSTGSSPQPLPELIK 693
Score = 223 bits (562), Expect = 7e-57
Identities = 167/533 (31%), Positives = 272/533 (50%), Gaps = 48/533 (9%)
Query: 149 PSGVVQITEFTDFNISEKPVKEVEKRMTTGV----TYEDIGGLKDVIEKIREMIELPLKH 204
P GV T+ + +K E+ GV ++DIGGL + I++++EM+ LPL +
Sbjct: 376 PLGVTPKTKKENTQKKKKKKPEIADLDPLGVDMNVNFDDIGGLDNYIDQLKEMVALPLLY 435
Query: 205 PELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA-----NEANAYFIAINGPEIMSKYYGE 259
PEL++ I PP+GVL +GPPGTGKTL+A+A+A +E F G +I+SK+ GE
Sbjct: 436 PELYQNFNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGE 495
Query: 260 SEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKV 319
+E +LR +F+EA+++ P+IIF DEID +AP RS ++ +V+ LLALMDG+ +RG+V
Sbjct: 496 AERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMDNRGQV 555
Query: 320 IVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR--GMPIEPDFRKDDV 377
IVIGATNRPDA+DPALRRPGRFDRE +PD + R +ILQI TR P+ +F D +
Sbjct: 556 IVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNF-IDKL 614
Query: 378 LKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD--EVKTRLIDKLLDE 435
+ + + + + A+ + +S PQ+ + D L D ++K ++ D +L
Sbjct: 615 AFLTKGYGGADLRSLCTEAALISIQRS----FPQIYRSNDKLLVDPSKIKVKVSDFMLAL 670
Query: 436 LADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL 495
V +A + ++ L LI+ D + + ++ L + F
Sbjct: 671 KKIVPS-------SARSTGSSPQPLPELIKPLLAD-QLNNLKNKLDYMLNIKDTTFQRNT 722
Query: 496 KMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILL 555
+++ E H D GG ED ++ E+ I P+ +L+
Sbjct: 723 SLLQNFIDYEEYSGEEEEH-DKYGGNEDTSSFR------SYEFFESMAESQICKPR-LLI 774
Query: 556 YGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIR----EIFRKARQAAPT 611
GP G G+ + A+ + V+ + L+ V ES + I + F +A++ P+
Sbjct: 775 NGPKGNGQQYVGAAILNYLEE--FNVQNLD-LASLVSESSRTIEAAVVQSFMEAKKRQPS 831
Query: 612 VIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDI 664
V+FI +D +N + + +I L +Q N ++++ DI
Sbjct: 832 VVFIPNLDIW-------INTIPENVILVLSGLFRSLQSNEKILLLCLAENLDI 877
>gi|6321709 26S proteasome ATPase; Yta7p [Saccharomyces cerevisiae]
>gi|1729862|sp|P40340|TBP7_YEAST TAT-BINDING HOMOLOG 7
>gi|2133219|pir||S64603 YTA7 protein - yeast
(Saccharomyces cerevisiae) >gi|1323491|emb|CAA97300.1|
(Z73055) ORF YGR270w [Saccharomyces cerevisiae]
>gi|1556439|emb|CAA69201.1| (Y07893) yta7 [Saccharomyces
cerevisiae]
Length = 1379
Score = 236 bits (595), Expect = 9e-61
Identities = 126/287 (43%), Positives = 186/287 (63%), Gaps = 9/287 (3%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
NV++DDIGGL++ +L+E V PL YPE ++ + ITPP+G+L +GPPGTGKTL+A+A+A
Sbjct: 409 NVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALA 468
Query: 572 T-----ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
E + F +G +ILSKWVGE+E+ +R +F +A++ P++IF DEID +AP R
Sbjct: 469 ASCSSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRS 528
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ I++ LL MDG+ V+VI ATNRPD +DPAL RPGRFDR P PD
Sbjct: 529 SKQEQIHASIVSTLLALMDGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDV 588
Query: 687 KARFEIFKVHTR--GMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGII 744
KARF+I ++ TR PL+ + + +LA T+GY GAD+ ++C EAA+I+++R+ + I
Sbjct: 589 KARFKILQIQTRKWSSPLSTNF-IDKLAFLTKGYGGADLRSLCTEAALISIQRSFPQ-IY 646
Query: 745 KPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+ K KV + DF AL+KI PS ++ T + + E K
Sbjct: 647 RSNDKLLVDPSKIKVKVSDFMLALKKIVPSSARSTGSSPQPLPELIK 693
Score = 223 bits (562), Expect = 7e-57
Identities = 167/533 (31%), Positives = 272/533 (50%), Gaps = 48/533 (9%)
Query: 149 PSGVVQITEFTDFNISEKPVKEVEKRMTTGV----TYEDIGGLKDVIEKIREMIELPLKH 204
P GV T+ + +K E+ GV ++DIGGL + I++++EM+ LPL +
Sbjct: 376 PLGVTPKTKKENTQKKKKKKPEIADLDPLGVDMNVNFDDIGGLDNYIDQLKEMVALPLLY 435
Query: 205 PELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVA-----NEANAYFIAINGPEIMSKYYGE 259
PEL++ I PP+GVL +GPPGTGKTL+A+A+A +E F G +I+SK+ GE
Sbjct: 436 PELYQNFNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGE 495
Query: 260 SEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKV 319
+E +LR +F+EA+++ P+IIF DEID +AP RS ++ +V+ LLALMDG+ +RG+V
Sbjct: 496 AERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMDNRGQV 555
Query: 320 IVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR--GMPIEPDFRKDDV 377
IVIGATNRPDA+DPALRRPGRFDRE +PD + R +ILQI TR P+ +F D +
Sbjct: 556 IVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNF-IDKL 614
Query: 378 LKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD--EVKTRLIDKLLDE 435
+ + + + + A+ + +S PQ+ + D L D ++K ++ D +L
Sbjct: 615 AFLTKGYGGADLRSLCTEAALISIQRS----FPQIYRSNDKLLVDPSKIKVKVSDFMLAL 670
Query: 436 LADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL 495
V +A + ++ L LI+ D + + ++ L + F
Sbjct: 671 KKIVPS-------SARSTGSSPQPLPELIKPLLAD-QLNNLKNKLDYMLNIKDTTFQRNT 722
Query: 496 KMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILL 555
+++ E H D GG ED ++ E+ I P+ +L+
Sbjct: 723 SLLQNFIDYEEYSGEEEEH-DKYGGNEDTSSFR------SYEFFESMAESQICKPR-LLI 774
Query: 556 YGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIR----EIFRKARQAAPT 611
GP G G+ + A+ + V+ + L+ V ES + I + F +A++ P+
Sbjct: 775 NGPKGNGQQYVGAAILNYLEE--FNVQNLD-LASLVSESSRTIEAAVVQSFMEAKKRQPS 831
Query: 612 VIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDI 664
V+FI +D +N + + +I L +Q N ++++ DI
Sbjct: 832 VVFIPNLDIW-------INTIPENVILVLSGLFRSLQSNEKILLLCLAENLDI 877
>sp|O17071|PRSX_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B
>gi|7499759|pir||T32268 hypothetical protein F23F1.8 -
Caenorhabditis elegans >gi|2394434|gb|AAB70326.1|
(AF024493) strong similarity to the AAA family of
ATPases [Caenorhabditis elegans]
Length = 398
Score = 235 bits (592), Expect = 2e-60
Identities = 145/427 (33%), Positives = 231/427 (53%), Gaps = 39/427 (9%)
Query: 367 PIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD-EVK 425
P P +D+ K L ++R+ + I++ ++++ K KE E+ + K + ++ +
Sbjct: 4 PTGPAIVEDERTKALNSYRRKLAECRDIEQKLKDLRK-KESEMTKQFDKSENDIKSLQSV 62
Query: 426 TRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREG---KIDFEAETIPREVLD 482
+++ ++L +L++ + + + +++G +D TI R++
Sbjct: 63 GQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPR 122
Query: 483 ELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAF 542
E V+P + + N+ + D+GGL + +ELRE VE PL PE F
Sbjct: 123 E--------------VDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELF 168
Query: 543 KAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
K GITPPKG LL+GPPGTGKTLLA+AVA++ NF+ V I+ K++GES + IRE+F
Sbjct: 169 KRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMF 228
Query: 603 RKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAAT 659
AR P ++F+DEIDAI RR GT +R R + +LL ++DG V VI AT
Sbjct: 229 NYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMAT 288
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
NRPD LDPALLRPGR DR I + P+E++R EI K+H+ + ++D + + + ++G++
Sbjct: 289 NRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFS 348
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
AD+ VC EA M A+R E V +DF +A+RK+G + ET
Sbjct: 349 AADLRNVCTEAGMFAIRAERE-----------------FVIDEDFMKAVRKVGDAKRLET 391
Query: 780 MEYYRKI 786
Y+ +
Sbjct: 392 KLDYKPV 398
Score = 204 bits (514), Expect = 3e-51
Identities = 103/209 (49%), Positives = 147/209 (70%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
++Y D+GGL + I ++RE++ELPL +PELF+++GI PPKG LL+GPPGTGKTLLA+AVA+
Sbjct: 139 ISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVAS 198
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ + F+ + I+ KY GES +RE+F A ++ P I+F+DEIDAI +R SE T
Sbjct: 199 QLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSA 258
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL +DG S GKV VI ATNRPD +DPAL RPGR DR+IE+G+P+ Q R
Sbjct: 259 DREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSR 318
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
EIL+IH+ + + + V+K+ + F
Sbjct: 319 LEILKIHSNKITKHGEIDFEAVVKLSDGF 347
>gb|AAF08387.1|AF145306_1 (AF145306) 26S proteasome regulatory complex subunit p48A
[Drosophila melanogaster] >gi|7292602|gb|AAF48001.1|
(AE003485) Rpt3 gene product [Drosophila melanogaster]
Length = 413
Score = 234 bits (591), Expect = 3e-60
Identities = 145/377 (38%), Positives = 211/377 (55%), Gaps = 21/377 (5%)
Query: 371 DFRKDDVLKILEDFKREGKFT--KIIDKAIE--EVNKSKEEEIPQVLKKIDAELYDEVK- 425
D + D L++ E + K + K +E EV + ++ + LKK +EVK
Sbjct: 17 DLKLKDAHSSLDELDMEDLYVRYKKLQKTLEFIEVQEEYIKDEQRNLKKEYLHAQEEVKR 76
Query: 426 ---TRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLD 482
L+ E D G VG+ + ++ + R + + ++D
Sbjct: 77 IQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVD 136
Query: 483 ELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAF 542
L + ++ M++P E P+V + DIGG++ KQE+REAVE PL + E +
Sbjct: 137 VLPP---EADSSISMLQPD-------EKPDVSYADIGGMDMQKQEIREAVELPLTHFELY 186
Query: 543 KAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIF 602
K GI PP+G+L+YGPPG GKT+LAKAVA + A+FI V G E + K++GE + +R++F
Sbjct: 187 KQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDVF 246
Query: 603 RKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAAT 659
R A++ AP +IFIDEIDAIA +R T +R RI+ +LL +MDG + V VI AT
Sbjct: 247 RLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMAT 306
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
NR D LDPALLRPGR DR I P PD + + +F T M L++DVDL+E R + +
Sbjct: 307 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSEDVDLEEFVARPDKIS 366
Query: 720 GADIAAVCREAAMIAMR 736
GADI A+C+EA M A+R
Sbjct: 367 GADINAICQEAGMHAVR 383
Score = 194 bits (489), Expect = 2e-48
Identities = 100/196 (51%), Positives = 134/196 (68%), Gaps = 3/196 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V+Y DIGG+ ++IRE +ELPL H EL++++GI+PP+GVL+YGPPG GKT+LAKAVA+
Sbjct: 157 VSYADIGGMDMQKQEIREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAH 216
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
A FI + G E + KY GE +R+VF+ A+ENAPAIIFIDEIDAIA KR +
Sbjct: 217 HTTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGA 276
Query: 299 EK---RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
++ R++ +LL MDG V VI ATNR D +DPAL RPGR DR+IE +PDR+ +
Sbjct: 277 DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 336
Query: 356 KEILQIHTRGMPIEPD 371
+ + T M + D
Sbjct: 337 RLVFSTITSKMNLSED 352
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb|AAC25114.1|
(AF056022) p60 katanin [Homo sapiens]
Length = 491
Score = 233 bits (589), Expect = 5e-60
Identities = 143/312 (45%), Positives = 192/312 (60%), Gaps = 32/312 (10%)
Query: 489 RDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
+D EAL+ R+++ + PNV WDDI L + K+ L+EAV P+ PE FK GI
Sbjct: 189 KDLVEALE-------RDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIR 239
Query: 549 PP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
P KG+L+ GPPGTGKTLLAKAVATE + F V + SK+ GESEK +R +F AR
Sbjct: 240 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 299
Query: 608 AAPTVIFIDEIDAIAPRRGT-DVNRVTDRIINQLLTEMDGI---QENAG----VVVIAAT 659
+P IFIDEID+I RRGT + + + R+ +LL +MDG+ EN V+V+AAT
Sbjct: 300 YSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAAT 359
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
N P +D AL R R ++ I +P P K R E+ ++ R + LADDVDL +A EGY+
Sbjct: 360 NFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYS 417
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGP 773
GADI VCR+A+++AMRR +E G+ EIR L+K TM+DFE AL+K+
Sbjct: 418 GADITNVCRDASLMAMRRRIE------GLTPEEIRNLSKEEMHMPTTMEDFEMALKKVSK 471
Query: 774 SVSKETMEYYRK 785
SVS +E Y K
Sbjct: 472 SVSAADIERYEK 483
Score = 142 bits (355), Expect = 1e-32
Identities = 91/250 (36%), Positives = 140/250 (55%), Gaps = 13/250 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
V ++DI L + + ++E + LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKAVA
Sbjct: 206 VRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVA 263
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R +
Sbjct: 264 TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEH 323
Query: 297 EVEKRVVAQLLALMDGLKSRGK-------VIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
E +RV A+LL MDG+ + V+V+ ATN P ID ALRR R ++ I + +
Sbjct: 324 EASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPL 381
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
P +GR+E+L+I R + + D + + +E + D ++ + + E
Sbjct: 382 PSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLT 441
Query: 410 PQVLKKIDAE 419
P+ ++ + E
Sbjct: 442 PEEIRNLSKE 451
>emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-containing) subunit A 1)
[Homo sapiens]
Length = 384
Score = 233 bits (589), Expect = 5e-60
Identities = 143/312 (45%), Positives = 192/312 (60%), Gaps = 32/312 (10%)
Query: 489 RDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
+D EAL+ R+++ + PNV WDDI L + K+ L+EAV P+ PE FK GI
Sbjct: 82 KDLVEALE-------RDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIR 132
Query: 549 PP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
P KG+L+ GPPGTGKTLLAKAVATE + F V + SK+ GESEK +R +F AR
Sbjct: 133 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 192
Query: 608 AAPTVIFIDEIDAIAPRRGT-DVNRVTDRIINQLLTEMDGI---QENAG----VVVIAAT 659
+P IFIDEID+I RRGT + + + R+ +LL +MDG+ EN V+V+AAT
Sbjct: 193 YSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAAT 252
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
N P +D AL R R ++ I +P P K R E+ ++ R + LADDVDL +A EGY+
Sbjct: 253 NFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYS 310
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGP 773
GADI VCR+A+++AMRR +E G+ EIR L+K TM+DFE AL+K+
Sbjct: 311 GADITNVCRDASLMAMRRRIE------GLTPEEIRNLSKEEMHMPTTMEDFEMALKKVSK 364
Query: 774 SVSKETMEYYRK 785
SVS +E Y K
Sbjct: 365 SVSAADIERYEK 376
Score = 142 bits (355), Expect = 1e-32
Identities = 91/250 (36%), Positives = 140/250 (55%), Gaps = 13/250 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
V ++DI L + + ++E + LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKAVA
Sbjct: 99 VRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVA 156
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R +
Sbjct: 157 TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEH 216
Query: 297 EVEKRVVAQLLALMDGLKSRGK-------VIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
E +RV A+LL MDG+ + V+V+ ATN P ID ALRR R ++ I + +
Sbjct: 217 EASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPL 274
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
P +GR+E+L+I R + + D + + +E + D ++ + + E
Sbjct: 275 PSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLT 334
Query: 410 PQVLKKIDAE 419
P+ ++ + E
Sbjct: 335 PEEIRNLSKE 344
>gi|11418569 katanin p60 (ATPase-containing) subunit A 1 [Homo sapiens]
Length = 385
Score = 233 bits (589), Expect = 5e-60
Identities = 143/312 (45%), Positives = 192/312 (60%), Gaps = 32/312 (10%)
Query: 489 RDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
+D EAL+ R+++ + PNV WDDI L + K+ L+EAV P+ PE FK GI
Sbjct: 84 KDLVEALE-------RDIISQNPNVRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIR 134
Query: 549 PP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
P KG+L+ GPPGTGKTLLAKAVATE + F V + SK+ GESEK +R +F AR
Sbjct: 135 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 194
Query: 608 AAPTVIFIDEIDAIAPRRGT-DVNRVTDRIINQLLTEMDGI---QENAG----VVVIAAT 659
+P IFIDEID+I RRGT + + + R+ +LL +MDG+ EN V+V+AAT
Sbjct: 195 YSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAAT 254
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
N P +D AL R R ++ I +P P K R E+ ++ R + LADDVDL +A EGY+
Sbjct: 255 NFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYS 312
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGP 773
GADI VCR+A+++AMRR +E G+ EIR L+K TM+DFE AL+K+
Sbjct: 313 GADITNVCRDASLMAMRRRIE------GLTPEEIRNLSKEEMHMPTTMEDFEMALKKVSK 366
Query: 774 SVSKETMEYYRK 785
SVS +E Y K
Sbjct: 367 SVSAADIERYEK 378
Score = 142 bits (355), Expect = 1e-32
Identities = 91/250 (36%), Positives = 140/250 (55%), Gaps = 13/250 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
V ++DI L + + ++E + LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKAVA
Sbjct: 101 VRWDDIADLVEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVA 158
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R +
Sbjct: 159 TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEH 218
Query: 297 EVEKRVVAQLLALMDGLKSRGK-------VIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
E +RV A+LL MDG+ + V+V+ ATN P ID ALRR R ++ I + +
Sbjct: 219 EASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPL 276
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
P +GR+E+L+I R + + D + + +E + D ++ + + E
Sbjct: 277 PSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLT 336
Query: 410 PQVLKKIDAE 419
P+ ++ + E
Sbjct: 337 PEEIRNLSKE 346
>sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASOME SUBUNIT P45) (THYROID
HORMONE RECEPTOR INTERACTING PROTEIN 1) (TRIP1)
>gi|2136007|pir||I53510 proteasome subunit p45 - human
>gi|7435734|pir||S65536 26S proteasome chain p45 - human
>gi|976227|dbj|BAA07919.1| (D44467) 26S proteasome
subunit p45 [Homo sapiens] >gi|1096205|prf||2111282A 26S
proteasome [Homo sapiens]
Length = 406
Score = 233 bits (588), Expect = 6e-60
Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 32/381 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L+++ A+ + K RL+ + L +L +VG + A+ ++ + + EGK
Sbjct: 40 QNLRRLQAQRNELNAKVRLLRREL-QLLQEQGSYVGEVVRAMDKKKVLVKVHP---EGKF 95
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +V +V R D Y K+ V+P ++ +VP+ ++ IGGL+
Sbjct: 96 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 155
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F+A GI PKG+LLYGPPGTGKTLLA+AVA + FI V
Sbjct: 156 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 215
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQ 639
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G+ + R + +
Sbjct: 216 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLE 275
Query: 640 LLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 699
LL ++DG + + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R
Sbjct: 276 LLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 335
Query: 700 MPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKV 759
M L ++L+++A G +GA++ VC EA M A+R R V
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-----------------ERRVHV 378
Query: 760 TMKDFEEALRKIGPSVSKETM 780
T +DFE A+ K+ S++ M
Sbjct: 379 TQEDFEMAVAKVMQKDSEKNM 399
Score = 194 bits (487), Expect = 4e-48
Identities = 102/190 (53%), Positives = 136/190 (70%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 327 DILKIHSRKM 336
>sp|P48601|PRS4_DROME 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4)
>gi|1066065|gb|AAB34134.1| (U39303) P26s4 [Drosophila
melanogaster]
Length = 439
Score = 233 bits (588), Expect = 6e-60
Identities = 126/290 (43%), Positives = 177/290 (60%), Gaps = 29/290 (10%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P L + P + DIGGL+ QE++E+VE PL +PE ++ GI PPKG++LYGP
Sbjct: 167 DPMVTMMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGP 226
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PGTGKTLLAKAVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+++FIDEI
Sbjct: 227 PGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEI 286
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DA+ +R + R R + +LL ++DG V VI ATNR + LDPAL+RPGR
Sbjct: 287 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRI 346
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR I P PDEK + IF +HT M LA+DV+L EL + +GADI A+C EA ++A+
Sbjct: 347 DRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMAL 406
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
R R KVT +DF++ SKE++ Y +K
Sbjct: 407 R-----------------ERRMKVTNEDFKK---------SKESVLYRKK 430
Score = 215 bits (541), Expect = 2e-54
Identities = 108/207 (52%), Positives = 148/207 (71%), Gaps = 3/207 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY DIGGL I++I+E +ELPL HPE +E++GI+PPKGV+LYGPPGTGKTLLAKAVAN+
Sbjct: 182 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 241
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEIDA+ KR S GE
Sbjct: 242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 301
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR + +DPAL RPGR DR+IE +PD + ++
Sbjct: 302 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 361
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILED 383
I IHT M + D +++ +D
Sbjct: 362 RIFTIHTSRMTLAEDVNLSELIMAKDD 388
>sp|P54778|PRS6_SOLTU 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG >gi|7435738|pir||T07110
vacuolar proton-ATPase chain E - potato
>gi|1155334|gb|AAB67835.1| (U43398) POTATP1 [Solanum
tuberosum]
Length = 413
Score = 233 bits (588), Expect = 6e-60
Identities = 146/403 (36%), Positives = 218/403 (53%), Gaps = 27/403 (6%)
Query: 370 PDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVK---- 425
P +DD+ L+ +R+ +F +I ++ +++ K+ L++ +EVK
Sbjct: 28 PSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKN--------LRREHLRAQEEVKRIQS 79
Query: 426 TRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELK 485
L+ E+ D + VG+ + ++ + R + + + ++D L
Sbjct: 80 VPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLP 139
Query: 486 VTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAY 545
L E P+V ++DIGG + KQE+REAVE PL + E +K
Sbjct: 140 PEADSSISLLSQSEK----------PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQI 189
Query: 546 GITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA 605
GI PP+G+LLYGPPGTGKT+LAKAVA + A FI V G E + K++GE + +R++FR A
Sbjct: 190 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 249
Query: 606 RQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRP 662
++ AP +IFIDE+DAIA R T +R RI+ +LL +MDG + V VI ATNR
Sbjct: 250 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 309
Query: 663 DILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD 722
D LDPALLRPGR DR I P PD + + +F+V T M L D+VDL++ R + + A+
Sbjct: 310 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAE 369
Query: 723 IAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFE 765
I A+C+EA M A+R+ + +I P R K DFE
Sbjct: 370 ITAICQEAGMHAVRK--NRYVILPKDFEKGYRTNVKKPDTDFE 410
Score = 202 bits (508), Expect = 1e-50
Identities = 126/342 (36%), Positives = 195/342 (56%), Gaps = 21/342 (6%)
Query: 87 VRKAEVREAKKVTLAPTEPIRFGRDFVEWLHER--LVGRPVVRGDYIKV-GVLGQELTFV 143
+R+ +R ++V + P+ G+ F+E + + +VG Y+++ + +EL
Sbjct: 63 LRREHLRAQEEVKRIQSVPLVIGQ-FMEMIDQNNAIVGSTTGSNYYVRILSTINRELL-- 119
Query: 144 VTATQPSGVVQITEFTDFNISEKP------VKEVEKRMTTGVTYEDIGGLKDVIEKIREM 197
+PS V + ++ + P + + + VTY DIGG ++IRE
Sbjct: 120 ----KPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREA 175
Query: 198 IELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYY 257
+ELPL H EL++++GI+PP+GVLLYGPPGTGKT+LAKAVA+ A FI + G E + KY
Sbjct: 176 VELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL 235
Query: 258 GESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK---RVVAQLLALMDGLK 314
GE +R+VF+ A+ENAPAIIFIDE+DAIA R + ++ R++ +LL MDG
Sbjct: 236 GEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD 295
Query: 315 SRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRK 374
V VI ATNR D +DPAL RPGR DR+IE +PDR+ ++ + Q+ T M + +
Sbjct: 296 QTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDL 355
Query: 375 DDVLKILEDFKREGKFTKIIDKA-IEEVNKSKEEEIPQVLKK 415
+D + D + T I +A + V K++ +P+ +K
Sbjct: 356 EDYVS-RPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEK 396
>sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT 8 >gi|2245467|gb|AAC48284.1|
(U97538) DUG [Drosophila melanogaster]
Length = 405
Score = 233 bits (588), Expect = 6e-60
Identities = 148/407 (36%), Positives = 231/407 (56%), Gaps = 34/407 (8%)
Query: 385 KREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD-EVKTRLIDKLLDELADVTHGF 443
K EG + I K IEE+ E+ Q L+++ A+ + K R++ + L +L +
Sbjct: 15 KGEGFRSYYIQK-IEELQLVVAEK-HQNLRRLQAQRNELNAKVRMLREEL-QLLQEQGSY 71
Query: 444 VGADLAALAREAAMAALRRLIREGK--IDFEAETIPREVLDELKVT-RRDFYEALKM--- 497
VG + + ++ + + EGK +D + +V +V R + Y K+
Sbjct: 72 VGEVVKPMDKKKVLVKVHP---EGKSVVDLDKNIDINDVTPNCRVALRNESYTLHKILPN 128
Query: 498 -VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLY 556
V+P ++ +VP+ ++ +GGL+ +E++E +E P+K+PE F A GI PKG+LLY
Sbjct: 129 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 188
Query: 557 GPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFID 616
GPPGTGKTLLA+AVA ++ FI V G E++ K++GE + +RE+F AR+ AP++IF+D
Sbjct: 189 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 248
Query: 617 EIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPG 673
EID+I R G+ + R + +LL ++DG + + VI ATNR DILDPALLRPG
Sbjct: 249 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 308
Query: 674 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMI 733
R DR I P P+E+AR +I K+H+R M L ++L+++A G +GA++ VC EA M
Sbjct: 309 RIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY 368
Query: 734 AMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
A+R R VT +DFE A+ K+ S++ M
Sbjct: 369 ALR-----------------ERRVHVTQEDFEMAVAKVMQKDSEKNM 398
Score = 195 bits (491), Expect = 1e-48
Identities = 101/190 (53%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE +GGL I++I+E+IELP+KHPELF+ LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 146 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 205
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 206 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 265
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +DPAL RPGR DR+IE P+ + R
Sbjct: 266 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 325
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 326 DILKIHSRKM 335
>gb|AAC63219.1| (AF043734) Pros45 proteosome subunit homolog [Drosophila
melanogaster] >gi|7295522|gb|AAF50835.1| (AE003568)
Pros45 gene product [Drosophila melanogaster]
Length = 405
Score = 233 bits (588), Expect = 6e-60
Identities = 148/407 (36%), Positives = 231/407 (56%), Gaps = 34/407 (8%)
Query: 385 KREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD-EVKTRLIDKLLDELADVTHGF 443
K EG + I K IEE+ E+ Q L+++ A+ + K R++ + L +L +
Sbjct: 15 KGEGFRSYYIQK-IEELQLVVAEK-HQNLRRLQAQRNELNAKVRMLREEL-QLLQEQGSY 71
Query: 444 VGADLAALAREAAMAALRRLIREGK--IDFEAETIPREVLDELKVT-RRDFYEALKM--- 497
VG + + ++ + + EGK +D + +V +V R + Y K+
Sbjct: 72 VGEVVKPMDKKKVLVKVHP---EGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPN 128
Query: 498 -VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLY 556
V+P ++ +VP+ ++ +GGL+ +E++E +E P+K+PE F A GI PKG+LLY
Sbjct: 129 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 188
Query: 557 GPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFID 616
GPPGTGKTLLA+AVA ++ FI V G E++ K++GE + +RE+F AR+ AP++IF+D
Sbjct: 189 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 248
Query: 617 EIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPG 673
EID+I R G+ + R + +LL ++DG + + VI ATNR DILDPALLRPG
Sbjct: 249 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 308
Query: 674 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMI 733
R DR I P P+E+AR +I K+H+R M L ++L+++A G +GA++ VC EA M
Sbjct: 309 RIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY 368
Query: 734 AMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
A+R R VT +DFE A+ K+ S++ M
Sbjct: 369 ALR-----------------ERRVHVTQEDFEMAVAKVMQKDSEKNM 398
Score = 195 bits (491), Expect = 1e-48
Identities = 101/190 (53%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE +GGL I++I+E+IELP+KHPELF+ LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 146 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 205
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 206 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 265
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +DPAL RPGR DR+IE P+ + R
Sbjct: 266 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 325
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 326 DILKIHSRKM 335
>gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis]
Length = 486
Score = 233 bits (588), Expect = 6e-60
Identities = 139/312 (44%), Positives = 196/312 (62%), Gaps = 32/312 (10%)
Query: 489 RDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
+D EAL+ R+++ + PN+ WDDI LE+ K+ L+EAV P+ PE FK GI
Sbjct: 186 KDLIEALE-------RDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFK--GIR 236
Query: 549 PP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
P KG+L+ GPPGTGKTLLAKAVATE + F + + SK+ GESEK +R +F AR
Sbjct: 237 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARF 296
Query: 608 AAPTVIFIDEIDAIAPRRGT-DVNRVTDRIINQLLTEMDGI---QENAG----VVVIAAT 659
APT IFIDEID+I RRGT + + + R+ +LL +MDG+ EN V+V+AAT
Sbjct: 297 YAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAAT 356
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
N P +D AL R R ++ I +P P K R E+ +++ + + LADDV+++ +A +GY+
Sbjct: 357 NFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYS 414
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGP 773
GADI VCR+A+++AMRR +E G+ EIR L++ TM+DFE AL+K+
Sbjct: 415 GADITNVCRDASLMAMRRRIE------GLTPEEIRNLSRDDMHMPTTMEDFEMALKKVSK 468
Query: 774 SVSKETMEYYRK 785
SVS +E Y K
Sbjct: 469 SVSASDIEKYEK 480
Score = 141 bits (352), Expect = 3e-32
Identities = 88/250 (35%), Positives = 142/250 (56%), Gaps = 13/250 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
+ ++DI L++ + ++E + LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKAVA
Sbjct: 203 IRWDDIADLEEAKKLLKEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVA 260
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F I+ + SKY GESE+ +R +F+ A AP IFIDEID+I +R +
Sbjct: 261 TECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEH 320
Query: 297 EVEKRVVAQLLALMDGLKSRGK-------VIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
E +RV A+LL MDG+ + V+V+ ATN P ID ALRR R ++ I + +
Sbjct: 321 EASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPL 378
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
P +GR+E+L+I+ + + + D + + + ++ + D ++ + + E
Sbjct: 379 PSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEGLT 438
Query: 410 PQVLKKIDAE 419
P+ ++ + +
Sbjct: 439 PEEIRNLSRD 448
>sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT 8 (18-56 PROTEIN)
>gi|1167963|gb|AAC46996.1| (U43728) 18-56 protein
[Manduca sexta]
Length = 402
Score = 233 bits (587), Expect = 8e-60
Identities = 148/411 (36%), Positives = 232/411 (56%), Gaps = 34/411 (8%)
Query: 381 LEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD-EVKTRLIDKLLDELADV 439
++ K EG I K IEE+ E+ Q L+++ A+ + K R++ + L +L
Sbjct: 8 VDSTKGEGFRPYYITK-IEELQLIVAEK-SQNLRRLQAQRNELNAKVRMLREEL-QLLQE 64
Query: 440 THGFVGADLAALAREAAMAALRRLIREGK--IDFEAETIPREVLDELKVT-RRDFYEALK 496
+VG + + ++ + + EGK +D + +V +V R + Y K
Sbjct: 65 QGSYVGEVVKPMDKKKVLVKVHP---EGKFVVDLDKNVDINDVTANCRVALRNESYTLHK 121
Query: 497 M----VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKG 552
+ V+P ++ +VP+ ++ +GGL+ +E++E +E P+K+PE F A GI PKG
Sbjct: 122 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKG 181
Query: 553 ILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTV 612
+LLYGPPGTGKTLLA+AVA ++ FI V G E++ K++GE + +RE+F AR+ AP++
Sbjct: 182 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 241
Query: 613 IFIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPAL 669
IF+DEID+I R G+ + R + +LL ++DG + + VI ATNR DILDPAL
Sbjct: 242 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPAL 301
Query: 670 LRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCRE 729
LRPGR DR I P P+E+AR +I K+H+R M L ++L+++A G +GA++ VC E
Sbjct: 302 LRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 361
Query: 730 AAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
A M A+R R VT +DFE A+ K+ S++ M
Sbjct: 362 AGMYALR-----------------ERRVHVTQEDFEMAVAKVMQKDSEKNM 395
Score = 195 bits (491), Expect = 1e-48
Identities = 101/190 (53%), Positives = 136/190 (71%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE +GGL I++I+E+IELP+KHPELF+ LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 143 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 202
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 203 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGD 262
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +DPAL RPGR DR+IE P+ + R
Sbjct: 263 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARL 322
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 323 DILKIHSRKM 332
>emb|CAA61864.1| (X89719) put. 26S protease subunit [Sus scrofa]
Length = 398
Score = 233 bits (587), Expect = 8e-60
Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 32/381 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L+++ A+ + K RL+ + L +L +VG + A+ ++ + + EGK
Sbjct: 32 QNLRRLQAQRNELNAKVRLLREEL-QLLQEQGSYVGEVVRAMDKKKVLVKVHP---EGKF 87
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +V +V R D Y K+ V+P ++ +VP+ ++ IGGL+
Sbjct: 88 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 147
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F+A GI PKG+LLYGPPGTGKTLLA+AVA + FI V
Sbjct: 148 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 207
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQ 639
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G+ + R + +
Sbjct: 208 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLE 267
Query: 640 LLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 699
LL ++DG + + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R
Sbjct: 268 LLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 327
Query: 700 MPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKV 759
M L ++L+++A G +GA++ VC EA M A+R R V
Sbjct: 328 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-----------------ERRVHV 370
Query: 760 TMKDFEEALRKIGPSVSKETM 780
T +DFE A+ K+ S++ M
Sbjct: 371 TQEDFEMAVAKVMQKDSEKNM 391
Score = 194 bits (487), Expect = 4e-48
Identities = 102/190 (53%), Positives = 136/190 (70%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 139 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 198
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 199 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 258
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 259 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 318
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 319 DILKIHSRKM 328
>pir||T43799 proteasome protein p45/SUG [imported] - rat (fragment)
>gi|2564007|dbj|BAA22935.1| (AB000493) proteasome
p45/SUG [Rattus norvegicus]
Length = 374
Score = 233 bits (587), Expect = 8e-60
Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 32/381 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L+++ A+ + K RL+ + L +L +VG + A+ ++ + + EGK
Sbjct: 8 QNLRRLQAQRNELNAKVRLLREEL-QLLQEQGSYVGEVVRAMDKKKVLVKVHP---EGKF 63
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +V +V R D Y K+ V+P ++ +VP+ ++ IGGL+
Sbjct: 64 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 123
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F+A GI PKG+LLYGPPGTGKTLLA+AVA + FI V
Sbjct: 124 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 183
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQ 639
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G+ + R + +
Sbjct: 184 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLE 243
Query: 640 LLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 699
LL ++DG + + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R
Sbjct: 244 LLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 303
Query: 700 MPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKV 759
M L ++L+++A G +GA++ VC EA M A+R R V
Sbjct: 304 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-----------------ERRVHV 346
Query: 760 TMKDFEEALRKIGPSVSKETM 780
T +DFE A+ K+ S++ M
Sbjct: 347 TQEDFEMAVAKVMQKDSEKNM 367
Score = 194 bits (487), Expect = 4e-48
Identities = 102/190 (53%), Positives = 136/190 (70%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 115 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 174
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 175 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 234
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 235 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 294
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 295 DILKIHSRKM 304
>emb|CAB55389.1| (AL117264) zwh0005.1 [Oryza sativa]
Length = 949
Score = 233 bits (587), Expect = 8e-60
Identities = 136/316 (43%), Positives = 197/316 (62%), Gaps = 18/316 (5%)
Query: 430 DKLLDELADVTHGFVGADLAALAREAAMAALRRLIRE------GKIDFEAETIPREVLDE 483
DK + +LA T GF+ D+ AL +A ++ ++ + K+ T +E
Sbjct: 484 DKFVKDLAVQTSGFMPRDILALVADAGISFAHKVETDKNNSEGDKLKGILPTSSSSSQNE 543
Query: 484 LKVTRRDFY----EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYP 539
K +++ E K +AL +VPNV W+D+GGLE+VK+ + + ++ PL Y
Sbjct: 544 EKTFCKEYILSSLERAKKRNRAALGTP--KVPNVKWEDVGGLEEVKKVILDTIQLPLLYK 601
Query: 540 EAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIR 599
F + + G+LLYGPPGTGKTLLAKAVATE NF++V+GPE+++ +VGESEKN+R
Sbjct: 602 HLFSSK-LGKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYVGESEKNVR 660
Query: 600 EIFRKARQAAPTVIFIDEIDAIAPRRG--TDVNRVTDRIINQLLTEMDGIQENA-GVVVI 656
+IF KAR A P VIF DE+D++AP RG +D V DR+++QLL E+DG+ +N+ + +I
Sbjct: 661 DIFEKARSARPCVIFFDELDSLAPARGSSSDSAGVMDRVVSQLLVEIDGLSDNSQDLFII 720
Query: 657 AATNRPDILDPALLRPGRFDRLILVPA-PDEKARFEIFKVHTRGMPLADDVDLKELARR- 714
ATNRPD+LD ALLRPGRFD+L+ V D R I K TR L ++V L +A++
Sbjct: 721 GATNRPDLLDSALLRPGRFDKLLYVGVNSDASYRERILKAQTRKYKLHENVSLLSIAQQC 780
Query: 715 TEGYTGADIAAVCREA 730
+TGADI A+C +A
Sbjct: 781 PPNFTGADIYALCADA 796
Score = 174 bits (437), Expect = 3e-42
Identities = 96/191 (50%), Positives = 132/191 (68%), Gaps = 7/191 (3%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFE-KLGIEPPKGVLLYGPPGTGKTLLAKAVA 237
V +ED+GGL++V + I + I+LPL + LF KLG GVLLYGPPGTGKTLLAKAVA
Sbjct: 575 VKWEDVGGLEEVKKVILDTIQLPLLYKHLFSSKLGKR--SGVLLYGPPGTGKTLLAKAVA 632
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVT 295
E + F+++ GPE+++ Y GESE+ +R++F++A P +IF DE+D++AP R S +
Sbjct: 633 TECSLNFLSVKGPELINMYVGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGSSSDS 692
Query: 296 GEVEKRVVAQLLALMDGLKSRGK-VIVIGATNRPDAIDPALRRPGRFDREIEVGV-PDRQ 353
V RVV+QLL +DGL + + +IGATNRPD +D AL RPGRFD+ + VGV D
Sbjct: 693 AGVMDRVVSQLLVEIDGLSDNSQDLFIIGATNRPDLLDSALLRPGRFDKLLYVGVNSDAS 752
Query: 354 GRKEILQIHTR 364
R+ IL+ TR
Sbjct: 753 YRERILKAQTR 763
>gi|7110703 protease (prosome, macropain) 26S subunit, ATPase 5 [Mus musculus]
>gi|11425146|ref|XP_008254.1| proteasome (prosome,
macropain) 26S subunit, ATPase, 5 [Homo sapiens]
>gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE REGULATORY
SUBUNIT 8 (MSUG1 PROTEIN) (TAT-BINDING PROTEIN HOMOLOG
10) (TBP10) (P45/SUG) >gi|2137798|pir||S61923 SUG1
protein - mouse >gi|1165125|emb|CAA90961.1| (Z54219)
mSUG1 protein [Mus musculus] >gi|1262433|emb|CAA61863.1|
(X89718) 26S protease subunit [Sus scrofa]
>gi|1395177|dbj|BAA11938.1| (D83521) proteasomal ATPase
(rat SUG1) [Rattus norvegicus]
>gi|2564003|dbj|BAA22933.1| (AB000491) proteasome
p45/SUG [Rattus norvegicus] >gi|3193258|gb|AAC19266.1|
(AF069053) proteasome subunit SUG1 [Bos taurus]
Length = 406
Score = 233 bits (587), Expect = 8e-60
Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 32/381 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L+++ A+ + K RL+ + L +L +VG + A+ ++ + + EGK
Sbjct: 40 QNLRRLQAQRNELNAKVRLLREEL-QLLQEQGSYVGEVVRAMDKKKVLVKVHP---EGKF 95
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +V +V R D Y K+ V+P ++ +VP+ ++ IGGL+
Sbjct: 96 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 155
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F+A GI PKG+LLYGPPGTGKTLLA+AVA + FI V
Sbjct: 156 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 215
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQ 639
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G+ + R + +
Sbjct: 216 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLE 275
Query: 640 LLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 699
LL ++DG + + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R
Sbjct: 276 LLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 335
Query: 700 MPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKV 759
M L ++L+++A G +GA++ VC EA M A+R R V
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-----------------ERRVHV 378
Query: 760 TMKDFEEALRKIGPSVSKETM 780
T +DFE A+ K+ S++ M
Sbjct: 379 TQEDFEMAVAKVMQKDSEKNM 399
Score = 194 bits (487), Expect = 4e-48
Identities = 102/190 (53%), Positives = 136/190 (70%), Gaps = 3/190 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTGE 297
+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E G+
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 266
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 267 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 326
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 327 DILKIHSRKM 336
>sp|P46502|PRS6_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B
>gi|529215|gb|AAA20608.1| (U12965) similar to
CDC48/PAS1/SEC18 family; highest similarity to 26S
protease subunit 4, member of eukaryotic ATPase family
[Caenorhabditis elegans]
Length = 414
Score = 232 bits (586), Expect = 1e-59
Identities = 145/401 (36%), Positives = 223/401 (55%), Gaps = 26/401 (6%)
Query: 371 DFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI---PQVLKKIDAELYDEVKTR 427
D DD +K L +R+ ++++ I+ ++ E+E+ + +K+I +
Sbjct: 31 DVSSDDYIK-LTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQS-------VP 82
Query: 428 LIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVT 487
L+ E D H VG+ + ++ L R + + ++D L
Sbjct: 83 LVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPP- 141
Query: 488 RRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGI 547
+ +++M+ P E P++ + DIGGL+ KQE+REAVE PL + E ++ GI
Sbjct: 142 --EADSSIQMLRPD-------EKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGI 192
Query: 548 TPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
PP+G+L+YGPPG GKT+LAKAVA + A+FI V G E + K++GE + +R++FR A++
Sbjct: 193 DPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 252
Query: 608 AAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDI 664
+P++IFIDEIDAIA +R T +R RI+ +LL +MDG ++ V VI ATNR D
Sbjct: 253 NSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDT 312
Query: 665 LDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIA 724
LDPALLRPGR DR I P PD + + +F M L+DDVDL++ R + +GADI
Sbjct: 313 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADIN 372
Query: 725 AVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFE 765
++C+EA M A+R + K KA + + K DFE
Sbjct: 373 SICQEAGMQAVRENRYVVLTKDLEKA--YKNVVKKDTNDFE 411
Score = 190 bits (477), Expect = 6e-47
Identities = 97/201 (48%), Positives = 134/201 (66%), Gaps = 3/201 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
++Y DIGGL +++RE +ELPL H EL++++GI+PP+GVL+YGPPG GKT+LAKAVA
Sbjct: 158 ISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAA 217
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
A FI + G E + KY GE +R+VF+ A+EN+P+IIFIDEIDAIA KR +
Sbjct: 218 NTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGA 277
Query: 299 EK---RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
++ R++ +LL MDG V VI ATNR D +DPAL RPGR DR+IE +PDR+ +
Sbjct: 278 DREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQK 337
Query: 356 KEILQIHTRGMPIEPDFRKDD 376
+ + M + D +D
Sbjct: 338 RLVFSTVCSRMNLSDDVDLED 358
>sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOMOLOG) (XSUG1)
>gi|1877414|emb|CAA57512.1| (X81986) XSUG1 [Xenopus
laevis]
Length = 461
Score = 232 bits (586), Expect = 1e-59
Identities = 142/380 (37%), Positives = 219/380 (57%), Gaps = 31/380 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L+++ A+ + K RL+ + L +L +VG + A+ ++ + + EGK
Sbjct: 35 QNLRRLQAQRNELNAKVRLLREEL-QLLQEQGSYVGEVVRAMDKKKVLVKVHP---EGKF 90
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +V +V R D Y K+ V+P ++ +VP+ ++ IGGL+
Sbjct: 91 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 150
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F+A GI PKG+LLYGPPGTGKTLLA+AVA + FI V
Sbjct: 151 KQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 210
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPR--RGTDVNRVTDRIINQL 640
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G+ + R + +L
Sbjct: 211 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGGDSEVQRTMLEL 270
Query: 641 LTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 700
L ++DG + + VI ATNR DILD ALLRPGR DR I P P+E+AR +I K+H+R M
Sbjct: 271 LNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM 330
Query: 701 PLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVT 760
L ++L+++A G +GA++ VC EA M A+R R VT
Sbjct: 331 NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-----------------ERRVHVT 373
Query: 761 MKDFEEALRKIGPSVSKETM 780
+DFE A+ K+ S++ M
Sbjct: 374 QEDFEMAVAKVMQKDSEKNM 393
Score = 189 bits (476), Expect = 8e-47
Identities = 100/190 (52%), Positives = 135/190 (70%), Gaps = 4/190 (2%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE IGGL I++I+E+IELP+KHPE FE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 142 TYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 201
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG--- 296
+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I + +G
Sbjct: 202 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGGDS 261
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
EV+ R + +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 262 EVQ-RTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARL 320
Query: 357 EILQIHTRGM 366
+IL+IH+R M
Sbjct: 321 DILKIHSRKM 330
>gb|AAF27916.1|AF220199_1 (AF220199) 26S proteasome regulatory subunit 8 [Pinus taeda]
Length = 433
Score = 232 bits (586), Expect = 1e-59
Identities = 141/379 (37%), Positives = 220/379 (57%), Gaps = 36/379 (9%)
Query: 413 LKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK--I 469
L +++A+ D K R + + L +L +VG + + + + + EGK +
Sbjct: 68 LNRLEAQRNDLNSKVRALREEL-QLLQEPGSYVGEVVKVMGKSKVLVKVHP---EGKYVV 123
Query: 470 DFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLI-----EVPNVHWDDIGGLEDV 524
D + ++ +V R+ L ++ PS + ++ +VP+ +D IGGL+
Sbjct: 124 DVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQ 183
Query: 525 KQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGP 584
+E++E +E P+K+PE F++ GI PKG+LLYGPPGTGKTLLA+AVA + FI V G
Sbjct: 184 IKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 243
Query: 585 EILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GT-DVNRVTDRIINQL 640
E++ K++GE + +RE+F AR+ AP++IF+DEID+I R GT + + R + +L
Sbjct: 244 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLEL 303
Query: 641 LTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 700
L ++DG + + + V+ ATNR DILD ALLRPGR DR I P P+E++RF+I K+H+R M
Sbjct: 304 LNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKM 363
Query: 701 PLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVT 760
L +DLK++A + G +GA++ AVC EA M A+R R VT
Sbjct: 364 NLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALR-----------------ERRVHVT 406
Query: 761 MKDFEEALRKIGPSVSKET 779
+DFE A+ K+ + KET
Sbjct: 407 QEDFEMAVAKV---MKKET 422
Score = 199 bits (500), Expect = 1e-49
Identities = 107/207 (51%), Positives = 144/207 (68%), Gaps = 7/207 (3%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY+ IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 173 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 232
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV---TG 296
+ FI ++G E++ KY GE +RE+F A E+AP+IIF+DEID+I R E G
Sbjct: 233 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNG 292
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +LL +DG ++ K+ V+ ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 293 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 352
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILE 382
+IL+IH+R M + R D+ KI E
Sbjct: 353 FDILKIHSRKMNL---MRGIDLKKIAE 376
>gb|AAF56205.1| (AE003745) Pros26.4 gene product [Drosophila melanogaster]
Length = 439
Score = 232 bits (586), Expect = 1e-59
Identities = 125/282 (44%), Positives = 175/282 (61%), Gaps = 29/282 (10%)
Query: 507 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
L + P + DIGGL+ QE++E+VE PL +PE ++ GI PPKG++LYGPPGTGKTLL
Sbjct: 175 LEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 234
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR- 625
AKAVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+++FIDEIDA+ +R
Sbjct: 235 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 294
Query: 626 --GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ R R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P
Sbjct: 295 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 354
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PDEK + IF +HT M LA+DV+L EL + +GADI A+C EA ++A+R
Sbjct: 355 PDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALR------- 407
Query: 744 IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
R KVT +DF++ SKE++ Y +K
Sbjct: 408 ----------ERRMKVTNEDFKK---------SKESVLYRKK 430
Score = 215 bits (541), Expect = 2e-54
Identities = 108/207 (52%), Positives = 148/207 (71%), Gaps = 3/207 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY DIGGL I++I+E +ELPL HPE +E++GI+PPKGV+LYGPPGTGKTLLAKAVAN+
Sbjct: 182 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 241
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEIDA+ KR S GE
Sbjct: 242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 301
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR + +DPAL RPGR DR+IE +PD + ++
Sbjct: 302 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 361
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILED 383
I IHT M + D +++ +D
Sbjct: 362 RIFTIHTSRMTLAEDVNLSELIMAKDD 388
>pir||A44468 26S proteasome regulatory chain 4 [validated] - human
Length = 440
Score = 232 bits (585), Expect = 1e-59
Identities = 120/266 (45%), Positives = 169/266 (63%), Gaps = 20/266 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
+ P + DIGGL++ QE++E+VE PL +PE ++ GI PPKG++LYGPPGTGKTLLAK
Sbjct: 178 KAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 237
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+++FIDEIDAI +R
Sbjct: 238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+ R R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
EK + IF++HT M LADDV L +L + +GADI A+C EA ++A+R
Sbjct: 358 EKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR--------- 408
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKI 771
R KVT +DF+++ +
Sbjct: 409 --------ERRMKVTNEDFKKSKENV 426
Score = 223 bits (562), Expect = 7e-57
Identities = 113/207 (54%), Positives = 151/207 (72%), Gaps = 3/207 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY DIGGL + I++I+E +ELPL HPE +E++GI+PPKGV+LYGPPGTGKTLLAKAVAN+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEIDAI KR S GE
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR + +DPAL RPGR DR+IE +PD + +K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILED 383
I QIHT M + D DD++ +D
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDD 389
>gi|4506207 proteasome (prosome, macropain) 26S subunit, ATPase, 1; Proteasome
26S subunit, ATPase, 1 [Homo sapiens]
>gi|1172634|sp|Q03527|PRS4_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 4 (P26S4) >gi|403456|gb|AAA35484.1| (L02426) 26S
protease (S4) regulatory subunit [Homo sapiens]
Length = 440
Score = 232 bits (585), Expect = 1e-59
Identities = 120/266 (45%), Positives = 169/266 (63%), Gaps = 20/266 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
+ P + DIGGL++ QE++E+VE PL +PE ++ GI PPKG++LYGPPGTGKTLLAK
Sbjct: 178 KAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 237
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+++FIDEIDAI +R
Sbjct: 238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+ R R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
EK + IF++HT M LADDV L +L + +GADI A+C EA ++A+R
Sbjct: 358 EKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR--------- 408
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKI 771
R KVT +DF+++ +
Sbjct: 409 --------ERRMKVTNEDFKKSKENV 426
Score = 223 bits (562), Expect = 7e-57
Identities = 113/207 (54%), Positives = 151/207 (72%), Gaps = 3/207 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY DIGGL + I++I+E +ELPL HPE +E++GI+PPKGV+LYGPPGTGKTLLAKAVAN+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEIDAI KR S GE
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR + +DPAL RPGR DR+IE +PD + +K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILED 383
I QIHT M + D DD++ +D
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDD 389
>gi|6679501 protease (prosome, macropain) 26S subunit, ATPase 1 [Mus musculus]
>gi|11434737|ref|XP_007386.1| similar to proteasome
(prosome, macropain) 26S subunit, ATPase, 1 (H. sapiens)
[Homo sapiens] >gi|1346811|sp|P49014|PRS4_MOUSE 26S
PROTEASE REGULATORY SUBUNIT 4 (P26S4)
>gi|1066067|gb|AAB34137.1| (U39302) P26s4 [Mus musculus]
>gi|1395182|dbj|BAA09341.1| (D50696) proteasomal ATPase
(S4) [Rattus norvegicus]
Length = 440
Score = 232 bits (585), Expect = 1e-59
Identities = 120/266 (45%), Positives = 169/266 (63%), Gaps = 20/266 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
+ P + DIGGL++ QE++E+VE PL +PE ++ GI PPKG++LYGPPGTGKTLLAK
Sbjct: 178 KAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAK 237
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+++FIDEIDAI +R
Sbjct: 238 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+ R R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P PD
Sbjct: 298 NSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
EK + IF++HT M LADDV L +L + +GADI A+C EA ++A+R
Sbjct: 358 EKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR--------- 408
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKI 771
R KVT +DF+++ +
Sbjct: 409 --------ERRMKVTNEDFKKSKENV 426
Score = 223 bits (562), Expect = 7e-57
Identities = 113/207 (54%), Positives = 151/207 (72%), Gaps = 3/207 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY DIGGL + I++I+E +ELPL HPE +E++GI+PPKGV+LYGPPGTGKTLLAKAVAN+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ + G E++ KY G+ + +RE+F+ AEE+AP+I+FIDEIDAI KR S GE
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR + +DPAL RPGR DR+IE +PD + +K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILED 383
I QIHT M + D DD++ +D
Sbjct: 363 RIFQIHTSRMTLADDVTLDDLIMAKDD 389
>sp|Q90732|PRS4_CHICK 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4) >gi|7435735|pir||S74197
ATP-dependent 26S proteinase regulatory subunit 4 -
chicken >gi|1399943|gb|AAC60013.1| (U60187) 26S ATPase
complex subunit 4 [Gallus gallus]
Length = 440
Score = 231 bits (584), Expect = 2e-59
Identities = 121/264 (45%), Positives = 168/264 (62%), Gaps = 20/264 (7%)
Query: 507 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
L + P + DIGGL++ QE++E+VE PL +PE ++ GI PPKG++LYGPPGTGKTLL
Sbjct: 176 LEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 235
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR- 625
AKAVA ++ A F+ V G E++ K++G+ K +RE+FR A + P+++FIDEIDAI +R
Sbjct: 236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRY 295
Query: 626 --GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ R R + +LL ++DG V VI ATNR + LDPAL+RPGR DR I P
Sbjct: 296 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 355
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PDEK + IF++HT M LADDV L EL + +GADI A+C EA ++A+R
Sbjct: 356 PDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALR------- 408
Query: 744 IKPGMKASEIRRLAKVTMKDFEEA 767
R KVT +DF+++
Sbjct: 409 ----------ERRMKVTNEDFKKS 422
Score = 220 bits (554), Expect = 6e-56
Identities = 111/207 (53%), Positives = 150/207 (71%), Gaps = 3/207 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY DIGGL + I++I+E +ELPL HPE +E++GI+PPKGV+LYGPPGTGKTLLAKAVAN+
Sbjct: 183 TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 242
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ + G E++ KY G+ + +RE+F+ AEE+ P+I+FIDEIDAI KR S GE
Sbjct: 243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGE 302
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR + +DPAL RPGR DR+IE +PD + +K
Sbjct: 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKK 362
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILED 383
I QIHT M + D D+++ +D
Sbjct: 363 RIFQIHTSRMTLADDVTLDELIMAKDD 389
>pir||T27048 hypothetical protein Y49E10.1 - Caenorhabditis elegans
>gi|3979998|emb|CAB11558.1| (Z98866) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=327.8,
E-value=4.1e-95, N=1~cDNA EST yk78f3.3 comes from this
gene~cDNA EST yk91c7.3 comes from this gene~cDNA EST
yk78f3.5 comes fr>
Length = 416
Score = 231 bits (583), Expect = 2e-59
Identities = 144/401 (35%), Positives = 228/401 (55%), Gaps = 38/401 (9%)
Query: 391 TKIIDKAIEEVNKSKEEEIPQVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLA 449
TK+ D + +KS Q ++++ A+ + K R++ + L +L + +VG
Sbjct: 36 TKVDDAQQKVADKS------QNVRRLQAQRNELNTKVRMLKEELQQLHE-QGSYVGEVSK 88
Query: 450 ALAREAAMAALRRLIREGK--IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSA 502
A+ ++ + + EGK +D + + +V R D Y K+ V+P
Sbjct: 89 AMDKKKVLVKVHP---EGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLV 145
Query: 503 LREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTG 562
++ +VP+ ++ +GGL+ +E++E +E P+K+PE F A GI PKG+LL+GPPGTG
Sbjct: 146 SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLFGPPGTG 205
Query: 563 KTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA 622
KTLLA+AVA ++ FI V G E++ K++GE + +RE+F AR+ AP++IF+DEID+I
Sbjct: 206 KTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIG 265
Query: 623 PRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLI 679
R + + R + +LL ++DG + + VI ATNR DILDPALLRPGR DR I
Sbjct: 266 SSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 325
Query: 680 LVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRAL 739
PAPDEKAR +I K+H+R M L +++ ++A + G +GA++ +VC EA M A+R
Sbjct: 326 EFPAPDEKARADILKIHSRKMNLMRGINMAKIAEQIPGASGAEVKSVCTEAGMFALR--- 382
Query: 740 EKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
R VT +DFE A+ K+ S++ M
Sbjct: 383 --------------ERRIHVTQEDFEMAVGKVMQKDSEKNM 409
Score = 198 bits (497), Expect = 3e-49
Identities = 131/349 (37%), Positives = 189/349 (53%), Gaps = 39/349 (11%)
Query: 49 NTAAIAWPAYPEDEGLGIIRMDGTIRKNAGVGLGD---EVTVRKAEVREAKKVTLAPTEP 105
+TA+ A P+ P + L + T+RK + D +V + VR +
Sbjct: 6 STASSADPSKPTAQKLTEESDEKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTK 65
Query: 106 IRFGRDFVEWLHERLVGRPVVRGDYIKVGVLGQELTFVVTATQPSG--VVQITEFTDFN- 162
+R ++ ++ LHE+ G Y+ + V+ P G VV + + D N
Sbjct: 66 VRMLKEELQQLHEQ--------GSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINS 117
Query: 163 -------------------ISEKPVKEVEKRMTTGV---TYEDIGGLKDVIEKIREMIEL 200
+ K V M V TYE +GGL I++I+E+IEL
Sbjct: 118 LNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIEL 177
Query: 201 PLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGES 260
P+KHPELF+ LGI PKGVLL+GPPGTGKTLLA+AVA+ FI ++G E++ K+ GE
Sbjct: 178 PVKHPELFDALGIAQPKGVLLFGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 237
Query: 261 EERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT--GEVE-KRVVAQLLALMDGLKSRG 317
+RE+F A E+AP+IIF+DEID+I R E + G+ E +R + +LL +DG ++
Sbjct: 238 ARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATK 297
Query: 318 KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGM 366
+ VI ATNR D +DPAL RPGR DR+IE PD + R +IL+IH+R M
Sbjct: 298 NIKVIMATNRIDILDPALLRPGRIDRKIEFPAPDEKARADILKIHSRKM 346
>emb|CAB51031.1| (AJ243811) l(3)70Da [Drosophila melanogaster]
Length = 1006
Score = 231 bits (583), Expect = 2e-59
Identities = 117/275 (42%), Positives = 169/275 (60%), Gaps = 6/275 (2%)
Query: 516 DDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQ 575
+++ GLE V L E + WP +YP F A + G+LLYGPPGTGKT L +AT
Sbjct: 720 EELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLATSWN 779
Query: 576 ANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDR 635
I+V+GPE+L+K++G+SE+N+R +F +AR A P V+F DE D++AP+RG D VTDR
Sbjct: 780 LRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTGVTDR 839
Query: 636 IINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 695
++NQLLTE+DG++ GV VIAAT+RP++LDPALLR GR DRL+ P PD AR IF+
Sbjct: 840 VVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFEA 899
Query: 696 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRR 755
+ + L + VD A +T YTGADI ++ A M A++ AL + ++ +
Sbjct: 900 LSSTLSLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQ------FGHEKLAK 953
Query: 756 LAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ K E+ + PS+S + Y + +F
Sbjct: 954 KISLKQKHLIESFQTTRPSLSASDVAKYHRTYARF 988
Score = 156 bits (390), Expect = 1e-36
Identities = 76/179 (42%), Positives = 110/179 (60%)
Query: 182 EDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAN 241
E++ GL+ V+ + E++ P ++P +F + GVLLYGPPGTGKT L +A N
Sbjct: 720 EELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLATSWN 779
Query: 242 AYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKR 301
I++ GPE+++KY G+SEE +R +F A P ++F DE D++APKR + V R
Sbjct: 780 LRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTGVTDR 839
Query: 302 VVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
VV QLL +DG++ V VI AT+RP+ +DPAL R GR DR +E +PD R I +
Sbjct: 840 VVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFE 898
>gb|AAF49760.1| (AE003536) l(3)70Da gene product [Drosophila melanogaster]
Length = 1006
Score = 231 bits (583), Expect = 2e-59
Identities = 117/275 (42%), Positives = 169/275 (60%), Gaps = 6/275 (2%)
Query: 516 DDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQ 575
+++ GLE V L E + WP +YP F A + G+LLYGPPGTGKT L +AT
Sbjct: 720 EELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLATSWN 779
Query: 576 ANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDR 635
I+V+GPE+L+K++G+SE+N+R +F +AR A P V+F DE D++AP+RG D VTDR
Sbjct: 780 LRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTGVTDR 839
Query: 636 IINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 695
++NQLLTE+DG++ GV VIAAT+RP++LDPALLR GR DRL+ P PD AR IF+
Sbjct: 840 VVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFEA 899
Query: 696 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRR 755
+ + L + VD A +T YTGADI ++ A M A++ AL + ++ +
Sbjct: 900 LSSTLSLDECVDFDWFAGKTANYTGADIQSILTSANMAAVKEALAQ------FGHEKLAK 953
Query: 756 LAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ K E+ + PS+S + Y + +F
Sbjct: 954 KISLKQKHLIESFQTTRPSLSASDVAKYHRTYARF 988
Score = 156 bits (390), Expect = 1e-36
Identities = 76/179 (42%), Positives = 110/179 (60%)
Query: 182 EDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEAN 241
E++ GL+ V+ + E++ P ++P +F + GVLLYGPPGTGKT L +A N
Sbjct: 720 EELPGLESVVGVLEEVLMWPSRYPTIFNASPLRNQAGVLLYGPPGTGKTYLVSQLATSWN 779
Query: 242 AYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKR 301
I++ GPE+++KY G+SEE +R +F A P ++F DE D++APKR + V R
Sbjct: 780 LRIISVKGPELLAKYIGQSEENVRNLFNRARSARPCVLFFDEFDSLAPKRGHDSTGVTDR 839
Query: 302 VVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
VV QLL +DG++ V VI AT+RP+ +DPAL R GR DR +E +PD R I +
Sbjct: 840 VVNQLLTELDGVEGLQGVTVIAATSRPELLDPALLRSGRIDRLVECPLPDAPARVRIFE 898
>dbj|BAB17626.1| (AB033537) 26S proteasome regulatory particle triple-A ATPase
subunit6 [Oryza sativa]
Length = 424
Score = 231 bits (583), Expect = 2e-59
Identities = 138/380 (36%), Positives = 220/380 (57%), Gaps = 33/380 (8%)
Query: 413 LKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK--I 469
L +++A+ D + R++ + L +L +VG + + + + + EGK +
Sbjct: 59 LNRLEAQRNDLNSRVRMLREEL-QLLQEPGSYVGEVVKVMGKSKVLVKVHP---EGKYVV 114
Query: 470 DFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLI-----EVPNVHWDDIGGLEDV 524
D + ++ +V R+ L ++ PS + ++ +VP+ +D IGGL+
Sbjct: 115 DIDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQ 174
Query: 525 KQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGP 584
+E++E +E P+K+PE F++ GI PKG+LLYGPPGTGKTLLA+AVA + FI V G
Sbjct: 175 IKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 234
Query: 585 EILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GT-DVNRVTDRIINQL 640
E++ K++GE + +RE+F AR+ AP++IF+DEID+I R GT + + R + +L
Sbjct: 235 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLEL 294
Query: 641 LTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGM 700
L ++DG + + + V+ ATNR DILD ALLRPGR DR I P P+E +RF+I K+H+R M
Sbjct: 295 LNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDSRFDILKIHSRKM 354
Query: 701 PLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVT 760
L +DLK++A + G +GA++ AVC EA M A+R R VT
Sbjct: 355 NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR-----------------ERRVHVT 397
Query: 761 MKDFEEALRKIGPSVSKETM 780
+DFE A+ K+ +++ M
Sbjct: 398 QEDFEMAVAKVMKKDTEKNM 417
Score = 198 bits (498), Expect = 2e-49
Identities = 107/207 (51%), Positives = 143/207 (68%), Gaps = 7/207 (3%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY+ IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 164 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 223
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV---TG 296
+ FI ++G E++ KY GE +RE+F A E+AP+IIF+DEID+I R E G
Sbjct: 224 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNG 283
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +LL +DG ++ K+ V+ ATNR D +D AL RPGR DR+IE P+ R
Sbjct: 284 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDSR 343
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILE 382
+IL+IH+R M + R D+ KI E
Sbjct: 344 FDILKIHSRKMNL---MRGIDLKKIAE 367
>pir||T41400 probable peroxisome biosynthesis protein - fission yeast
(Schizosaccharomyces pombe) >gi|3169060|emb|CAA19256.1|
(AL023704) putative peroxisome biosynthesis protein; AAA
family ATPases [Schizosaccharomyces pombe]
Length = 937
Score = 231 bits (582), Expect = 3e-59
Identities = 130/414 (31%), Positives = 223/414 (53%), Gaps = 52/414 (12%)
Query: 414 KKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEA 473
K+I ++ E + + ++ ++ T G++ DL + A I+ G
Sbjct: 518 KEILTTIFQENFSDITMDSIEFISVKTEGYLMTDLVLFVKRLLSEAFVEKIQNG------ 571
Query: 474 ETIPREVLDE--LKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREA 531
P+ ++++ ++ T +DF P LR+ ++ W DI G+++ K+ +R+
Sbjct: 572 ---PKHLMNKGLIEKTLKDFV-------PLQLRKAKFVKSSIRWIDIAGMQEAKEAVRDI 621
Query: 532 VEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWV 591
+E P+KY +K + P GILL+G PG GKT LA A+++ FI+++GPE+L K++
Sbjct: 622 IESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYI 681
Query: 592 GESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENA 651
G+SE+ +R++F +A+ A P V+F DE D++APRRG D VTDR++NQ+LT+MDG +
Sbjct: 682 GKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLD 741
Query: 652 GVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKEL 711
GV ++AAT RPD++DPALLRPGR D+LI P+E+ R E+ + + + LK+L
Sbjct: 742 GVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKL 801
Query: 712 ARRTEGYTGADIAAVCREAAMIAMRRALEK---GIIKPGMKASEIRRLA----------- 757
+ T+GYT AD++++ +A +IA+ + L++ + P S L
Sbjct: 802 STLTDGYTYADLSSLLYDAHLIAVHKLLKRVSINAVDPSQTTSSFTNLTTESKRNASMLA 861
Query: 758 ------------------KVTMKDF--EEALRKIGPSVSKETMEYYRKIQEQFK 791
V ++D+ EAL+K PS++ E E+ + F+
Sbjct: 862 LPPESRYNQNMQSMSDSKSVVIEDYMLMEALKKNSPSLNSEEFEHLSNLYRDFR 915
Score = 164 bits (410), Expect = 4e-39
Identities = 77/188 (40%), Positives = 124/188 (65%)
Query: 173 KRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLL 232
K + + + + DI G+++ E +R++IE P+K+ ++++ + P G+LL+G PG GKT L
Sbjct: 597 KFVKSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYL 656
Query: 233 AKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRS 292
A A+++ FI+I GPE++ KY G+SE+ +R++F A+ P ++F DE D++AP+R
Sbjct: 657 ASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRG 716
Query: 293 EVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
+ + V RVV Q+L MDG +S V ++ AT RPD IDPAL RPGR D+ I +P+
Sbjct: 717 QDSTGVTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNE 776
Query: 353 QGRKEILQ 360
+ R E+LQ
Sbjct: 777 EERLEVLQ 784
>gi|4506213 proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
sapiens] >gi|2136322|pir||S60343 Trip1 protein - human
>gi|695370|gb|AAC41735.1| (L38810) thyroid receptor
interactor [Homo sapiens] >gi|1094810|prf||2106382A
thyroid hormone receptor-interacting protein [Homo
sapiens]
Length = 406
Score = 231 bits (582), Expect = 3e-59
Identities = 141/381 (37%), Positives = 219/381 (57%), Gaps = 32/381 (8%)
Query: 411 QVLKKIDAELYD-EVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK- 468
Q L+++ A+ + K RL+ + L +L +VG + A+ ++ + + EGK
Sbjct: 40 QNLRRLQAQRNELNAKVRLLREEL-QLLQEQGSYVGEVVRAMDKKKVLVKVHP---EGKF 95
Query: 469 -IDFEAETIPREVLDELKVT-RRDFYEALKM----VEPSALREVLIEVPNVHWDDIGGLE 522
+D + +V +V R D Y K+ V+P ++ +VP+ ++ IGGL+
Sbjct: 96 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 155
Query: 523 DVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVR 582
+E++E +E P+K+PE F+A GI PKG+LLYGPPGTGKTLLA+AVA + FI V
Sbjct: 156 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 215
Query: 583 GPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVTDRIINQ 639
G E++ K++GE + +RE+F AR+ AP++IF+DEID+I R G+ + R + +
Sbjct: 216 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGSSEVQRQMLE 275
Query: 640 LLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRG 699
LL ++DG + + VI ATNR D+LD ALLRPGR DR I P P+E+AR +I K+H+R
Sbjct: 276 LLNQLDGFEATKNIKVIMATNRIDMLDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 335
Query: 700 MPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKV 759
M L ++L+++A G +GA++ VC EA M A+R R V
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-----------------ERRVHV 378
Query: 760 TMKDFEEALRKIGPSVSKETM 780
T +DFE A+ K+ S++ M
Sbjct: 379 TQEDFEMAVAKVMQKDSEKNM 399
Score = 193 bits (486), Expect = 5e-48
Identities = 101/191 (52%), Positives = 138/191 (71%), Gaps = 5/191 (2%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE IGGL I++I+E+IELP+KHPELFE LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 147 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 206
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE----VT 295
+ FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E +
Sbjct: 207 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGS 266
Query: 296 GEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
EV+++++ +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE P+ + R
Sbjct: 267 SEVQRQML-ELLNQLDGFEATKNIKVIMATNRIDMLDSALLRPGRIDRKIEFPPPNEEAR 325
Query: 356 KEILQIHTRGM 366
+IL+IH+R M
Sbjct: 326 LDILKIHSRKM 336
>sp|P72991|FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4 >gi|7446576|pir||S74970 cell
division protein ftsH-2 - Synechocystis sp. (strain PCC
6803) >gi|1652085|dbj|BAA17010.1| (D90902) cell division
protein FtsH [Synechocystis sp.]
Length = 616
Score = 231 bits (582), Expect = 3e-59
Identities = 122/286 (42%), Positives = 175/286 (60%), Gaps = 23/286 (8%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V + D+ G+E K EL E V++ LK + F G PKG+LL GPPGTGKTLLAKAVA
Sbjct: 158 VTFGDVAGIEQAKLELTEVVDF-LKNADRFTELGAKIPKGVLLVGPPGTGKTLLAKAVAG 216
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV--- 629
E+ F ++ G E + +VG +R++F +A+ AP ++FIDEIDA+ +RG +
Sbjct: 217 EAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGG 276
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
N ++ +NQLLTEMDG + N G++++AATNRPD+LD AL+RPGRFDR ++V PD R
Sbjct: 277 NDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGR 336
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMK 749
EI VH RG L+ DVDL ++ARRT G+TGAD++ + EAA++A R
Sbjct: 337 REILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAAR------------- 383
Query: 750 ASEIRRLAKVTMKDFEEALRKI--GPSVSKETMEYYRKIQEQFKQA 793
R L +++M + +A+ ++ GP M RK + +A
Sbjct: 384 ----RNLTEISMDEVNDAIDRVLAGPEKKNRVMSEKRKTLVAYHEA 425
Score = 187 bits (471), Expect = 3e-46
Identities = 111/289 (38%), Positives = 163/289 (55%), Gaps = 9/289 (3%)
Query: 166 KPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPP 225
K V+ T VT+ D+ G++ ++ E+++ LK+ + F +LG + PKGVLL GPP
Sbjct: 145 KSKARVQMEPQTQVTFGDVAGIEQAKLELTEVVDF-LKNADRFTELGAKIPKGVLLVGPP 203
Query: 226 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEID 285
GTGKTLLAKAVA EA F +I+G E + + G R+R++F++A+ NAP I+FIDEID
Sbjct: 204 GTGKTLLAKAVAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEID 263
Query: 286 AIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFD 342
A+ +R G + ++ + QLL MDG + +I++ ATNRPD +D AL RPGRFD
Sbjct: 264 AVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFD 323
Query: 343 REIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVN 402
R++ V PD GR+EIL +H RG + D D + + F + + AI
Sbjct: 324 RQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAAR 383
Query: 403 KSKEE-EIPQVLKKIDAELY-DEVKTRLID---KLLDELADVTHGFVGA 446
++ E + +V ID L E K R++ K L + H VGA
Sbjct: 384 RNLTEISMDEVNDAIDRVLAGPEKKNRVMSEKRKTLVAYHEAGHALVGA 432
>gb|AAF46146.1| (AE003437) Rpt4 gene product [Drosophila melanogaster]
Length = 397
Score = 230 bits (581), Expect = 4e-59
Identities = 152/415 (36%), Positives = 224/415 (53%), Gaps = 37/415 (8%)
Query: 378 LKILEDFKREGKFTKIID-KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDE- 435
+K L ++++ K+++ K IE K K EEI + K D D + + +++ E
Sbjct: 14 VKALSEYRK-----KLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEV 68
Query: 436 LADVTHG-FVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEA 494
L +T F+ + A + RR + + K+ ++ R LD +T +
Sbjct: 69 LKQLTEDKFI---VKATNGPRYVVGCRRQLDKAKL----KSGTRVALDMTTLTIMRYLP- 120
Query: 495 LKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGIL 554
+ V+P + +V + IGGL D +ELRE +E PL PE F GITPPKG L
Sbjct: 121 -REVDPLVYNMSHEDPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCL 179
Query: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIF 614
LYGPPGTGKTLLA+AVA++ ANF+ V I+ K++GES + IRE+F AR P +IF
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIF 239
Query: 615 IDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLR 671
+DEIDAI RR GT +R R + +LL +MDG V +I ATNRPD LDPALLR
Sbjct: 240 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 299
Query: 672 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 731
PGR DR I +P P+E+AR EI K+H + ++D + + + ++ + GAD+ VC EA
Sbjct: 300 PGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAG 359
Query: 732 MIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKI 786
+ A+R E V +DF +A+RK+ + E+ Y+ +
Sbjct: 360 LFAIRAERE-----------------YVIQEDFMKAVRKVSDNKKLESKLDYKPV 397
Score = 203 bits (510), Expect = 8e-51
Identities = 112/250 (44%), Positives = 157/250 (62%), Gaps = 3/250 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY IGGL D I ++RE+IELPL +PELF ++GI PPKG LLYGPPGTGKTLLA+AVA+
Sbjct: 138 VTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVAS 197
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ +A F+ + I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 198 QLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 257
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL MDG S G+V +I ATNRPD +DPAL RPGR DR+IE+ +P+ Q R
Sbjct: 258 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 317
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKK 415
EIL+IH + + + ++K+ ++F + + + +E I + K
Sbjct: 318 LEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMK 377
Query: 416 IDAELYDEVK 425
++ D K
Sbjct: 378 AVRKVSDNKK 387
>sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) >gi|7435744|pir||T03776 tat binding protein
homolog - rice >gi|556558|dbj|BAA04615.1| (D17789) rice
homologue of Tat binding protein [Oryza sativa]
Length = 448
Score = 229 bits (577), Expect = 1e-58
Identities = 123/277 (44%), Positives = 171/277 (61%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
V+P + + P + DIGGL+ QE++EAVE PL +PE ++ GI PPKG++LYG
Sbjct: 175 VDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYG 234
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA + A F+ V G E++ K++G+ K +RE+FR A + +P+++FIDE
Sbjct: 235 EPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDE 294
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDA+ +R + R R + +LL ++DG V VI ATNR + LDPALLRPGR
Sbjct: 295 IDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGR 354
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I P PD K R IF++HT M LADDV+L+E + ++GADI A+C EA ++A
Sbjct: 355 IDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 414
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R KVT DF++A K+
Sbjct: 415 LR-----------------ERRMKVTHADFKKAKEKV 434
Score = 208 bits (525), Expect = 1e-52
Identities = 117/256 (45%), Positives = 163/256 (62%), Gaps = 22/256 (8%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
+Y DIGGL I++I+E +ELPL HPEL+E +GI PPKGV+LYG PGTGKTLLAKAVAN
Sbjct: 191 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANS 250
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TGE 297
+A F+ + G E++ KY G+ + +RE+F+ A+E +P+I+FIDEIDA+ KR + GE
Sbjct: 251 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGE 310
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR +++DPAL RPGR DR+IE +PD + R+
Sbjct: 311 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 370
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDF------------------KREGKFTKI-IDKA 397
I QIHT M + D ++ + ++F +R K T KA
Sbjct: 371 RIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKA 430
Query: 398 IEEVNKSKEEEIPQVL 413
E+V K+E +P+ L
Sbjct: 431 KEKVMFKKKEGVPEGL 446
>pir||T33633 hypothetical protein F56F11.4 - Caenorhabditis elegans
>gi|3790757|gb|AAC71778.1| (AF099922) similar to the AAA
family of ATPases; most similar to 26S protease
regulatory subunit 8 [Caenorhabditis elegans]
Length = 443
Score = 228 bits (576), Expect = 2e-58
Identities = 152/460 (33%), Positives = 241/460 (52%), Gaps = 33/460 (7%)
Query: 328 PDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKRE 387
P + P R+P D D Q + + T+ E +FR+++ K + K+
Sbjct: 3 PAPVFPNSRKPATLDAN-----SDEQTLRPYFK--TKVEQAEVNFRENNWKKRIISQKKN 55
Query: 388 GKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGAD 447
F + + IE++ E+ I V + + + K RL+ + + L + VG
Sbjct: 56 QVFDEKLKFLIEKLQTVAEKSI-NVRRLMAQQKELNGKVRLLKEEISHLHE-QGSHVGEV 113
Query: 448 LAALAREAAMAALR---RLIREGKIDFEAETIPREVLDELKVTRRDFYEAL-KMVEPSAL 503
A+ ++ + + I + + T+ L+ +E L V+P
Sbjct: 114 CKAMDKKKVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVS 173
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
++ +VP+ ++ +GGL+ +E++E +E P+K+PE F A GI PKG+LLYGPPGTGK
Sbjct: 174 LMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 233
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
TLLA+AVA ++ FI V G E++ K++GE + +RE+F AR+ AP++IF+DEID+I
Sbjct: 234 TLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 293
Query: 624 RR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLIL 680
R + R + +LL ++DG + + VI ATNR DILD ALLRPGR DR I
Sbjct: 294 SRVEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 353
Query: 681 VPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALE 740
PAPDEKAR +I K+H+R M L + + ++A + G +GA++ +VC EA M A+R
Sbjct: 354 FPAPDEKARAQILKIHSRKMNLMRGIRMDKIAEQIPGASGAEVKSVCTEAGMFALR---- 409
Query: 741 KGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
R VT +DFE A+ K+ S++ M
Sbjct: 410 -------------ERRIHVTQEDFEMAVGKVMQKDSEKNM 436
Score = 198 bits (498), Expect = 2e-49
Identities = 103/201 (51%), Positives = 140/201 (69%), Gaps = 3/201 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TYE +GGL I++I+E+IELP+KHPELF+ LGI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 184 TYEMVGGLDTQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 243
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT--GE 297
FI ++G E++ K+ GE +RE+F A E+AP+IIF+DEID+I R E + G+
Sbjct: 244 TECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGSRGGD 303
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG ++ + VI ATNR D +D AL RPGR DR+IE PD + R
Sbjct: 304 SEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPAPDEKARA 363
Query: 357 EILQIHTRGMPIEPDFRKDDV 377
+IL+IH+R M + R D +
Sbjct: 364 QILKIHSRKMNLMRGIRMDKI 384
>dbj|BAA33755.2| (AB017480) chloroplast FtsH protease [Nicotiana tabacum]
Length = 714
Score = 228 bits (576), Expect = 2e-58
Identities = 119/238 (50%), Positives = 160/238 (67%), Gaps = 6/238 (2%)
Query: 509 EVPN--VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
EVP V + D+ G + K EL+E V++ LK P+ + A G PKG LL GPPGTGKTLL
Sbjct: 244 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 302
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+AVA E+ F + E + +VG +R++F KA+ AP ++FIDEIDA+ +RG
Sbjct: 303 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 362
Query: 627 TDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ N ++ INQLLTEMDG N+GV+V+AATNRPD+LD ALLRPGRFDR + V
Sbjct: 363 AGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 422
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
PD R +I +VH+RG L DVD +++ARRT GYTGAD+ + EAA++A RR L++
Sbjct: 423 PDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARRELKE 480
Score = 180 bits (451), Expect = 7e-44
Identities = 110/297 (37%), Positives = 165/297 (55%), Gaps = 16/297 (5%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
DF S+ +EV + TGVT+ D+ G +++E+++ LK+P+ + LG + PKG
Sbjct: 234 DFGRSKSKFQEVPE---TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGC 289
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL GPPGTGKTLLA+AVA EA F + E + + G R+R++F++A+ AP I+
Sbjct: 290 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIV 349
Query: 280 FIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
FIDEIDA+ +R G + ++ + QLL MDG VIV+ ATNRPD +D AL
Sbjct: 350 FIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 409
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPGRFDR++ V PD GR +ILQ+H+RG + D + + + + + +
Sbjct: 410 RPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEA 469
Query: 397 AI----EEVNKSKEEEIPQVLKKIDAELYDEVKTRLID---KLLDELADVTHGFVGA 446
AI E+ + ++EI L++I A E K ++ K L + H VGA
Sbjct: 470 AILAARRELKEISKDEISDALERIIAG--PEKKNAVVSDEKKKLVAYHEAGHALVGA 524
>gb|AAF08391.1|AF145310_1 (AF145310) 26S proteasome regulatory complex subunit p42D
[Drosophila melanogaster]
Length = 390
Score = 228 bits (576), Expect = 2e-58
Identities = 152/415 (36%), Positives = 222/415 (52%), Gaps = 37/415 (8%)
Query: 378 LKILEDFKREGKFTKIID-KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDE- 435
+K L ++++ K+++ K IE K K EEI + K D D + + +++ E
Sbjct: 7 VKALSEYRK-----KLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEV 61
Query: 436 LADVTHG-FVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEA 494
L +T F+ + A + RR + + K+ ++ R LD +T +
Sbjct: 62 LKQLTEDKFI---VKATNGPRYVVGCRRQLDKAKL----KSGTRVALDMTTLTIMRYLP- 113
Query: 495 LKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGIL 554
+ V+P +V + IGGL D +ELRE +E PL PE F GITPPKG L
Sbjct: 114 -REVDPLVYNMSHEAPGDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCL 172
Query: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIF 614
LYGPPGTGKTLLA+AVA++ ANF+ V I+ K++GES + IRE+F AR P +IF
Sbjct: 173 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIF 232
Query: 615 IDEIDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLR 671
+DEIDAI RR GT +R R + +LL +MDG V +I ATNRPD LDPALLR
Sbjct: 233 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLR 292
Query: 672 PGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAA 731
PGR DR I +P P+E+AR EI K+H + ++D + + + ++ + GAD+ VC EA
Sbjct: 293 PGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDNFNGADLRNVCTEAG 352
Query: 732 MIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKI 786
A+R E V +DF +A+RK+ + E+ Y+ +
Sbjct: 353 FFAIRAERE-----------------YVIQEDFMKAVRKVSDNKKLESKLDYKPV 390
Score = 202 bits (509), Expect = 1e-50
Identities = 107/209 (51%), Positives = 145/209 (69%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY IGGL D I ++RE+IELPL +PELF ++GI PPKG LLYGPPGTGKTLLA+AVA+
Sbjct: 131 VTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVAS 190
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ +A F+ + I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 191 QLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 250
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL MDG S G+V +I ATNRPD +DPAL RPGR DR+IE+ +P+ Q R
Sbjct: 251 DREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 310
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
EIL+IH + + + ++K+ ++F
Sbjct: 311 LEILKIHALKIAKHGEIDYEAIVKLSDNF 339
>gb|AAD24384.1|AC006081_20 (AC006081) 26S proteasome subunit 4 [Arabidopsis thaliana]
Length = 443
Score = 228 bits (575), Expect = 2e-58
Identities = 123/277 (44%), Positives = 170/277 (60%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
V+P + + P + DIGGLE QE++EAVE PL +PE ++ GI PPKG++LYG
Sbjct: 170 VDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYG 229
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA + A F+ V G E++ K++G+ K +RE+FR A +P+++FIDE
Sbjct: 230 EPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 289
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDA+ +R + R R + +LL ++DG V VI ATNR + LDPALLRPGR
Sbjct: 290 IDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGR 349
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I P PD K R IF++HT M LA+DV+L+E + ++GADI A+C EA ++A
Sbjct: 350 IDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLA 409
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R KVT DF++A K+
Sbjct: 410 LR-----------------ERRMKVTHVDFKKAKEKV 429
Score = 211 bits (531), Expect = 3e-53
Identities = 116/256 (45%), Positives = 166/256 (64%), Gaps = 22/256 (8%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
+Y DIGGL+ I++I+E +ELPL HPEL+E +GI+PPKGV+LYG PGTGKTLLAKAVAN
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 245
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT--GE 297
+A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FIDEIDA+ KR + GE
Sbjct: 246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGE 305
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR +++DPAL RPGR DR+IE +PD + R+
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 365
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDF------------------KREGKFTKI-IDKA 397
I QIHT M + D ++ + ++F +R K T + KA
Sbjct: 366 RIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKA 425
Query: 398 IEEVNKSKEEEIPQVL 413
E+V K+E +P+ L
Sbjct: 426 KEKVMFKKKEGVPEGL 441
>pir||T36330 cell division protein ftsH2 - Streptomyces coelicolor
>gi|4808343|emb|CAB42757.1| (AL049841) cell division
protein ftsH homolog [Streptomyces coelicolor A3(2)]
Length = 668
Score = 228 bits (575), Expect = 2e-58
Identities = 115/231 (49%), Positives = 153/231 (65%), Gaps = 4/231 (1%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
+ P + D+ G ++ +EL E E+ L+ P F+A G PKG+LLYGPPGTGKTLLA+
Sbjct: 153 DTPKTTFSDVAGSDEAVEELHEIKEF-LQEPAKFQAVGAKIPKGVLLYGPPGTGKTLLAR 211
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
AVA E+ F ++ G + + +VG +R++F +A+ AP ++F+DEIDA+ RG
Sbjct: 212 AVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAIVFVDEIDAVGRHRGAG 271
Query: 629 VNRVTD---RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+ D + +NQLL EMDG GV++IAATNRPDILDPALLRPGRFDR I V PD
Sbjct: 272 LGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRPGRFDRQIAVDRPD 331
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMR 736
+ R EI KVH +G P+A DVDL +ARRT G TGAD+A V EAA++ R
Sbjct: 332 MQGRLEILKVHQKGKPVAPDVDLSAVARRTPGMTGADLANVLNEAALLTAR 382
Score = 196 bits (493), Expect = 8e-49
Identities = 100/213 (46%), Positives = 140/213 (64%), Gaps = 5/213 (2%)
Query: 162 NISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLL 221
N + K + K T T+ D+ G + +E++ E+ E L+ P F+ +G + PKGVLL
Sbjct: 141 NFGKSKAKLITKD-TPKTTFSDVAGSDEAVEELHEIKEF-LQEPAKFQAVGAKIPKGVLL 198
Query: 222 YGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFI 281
YGPPGTGKTLLA+AVA EA F +I+G + + + G R+R++F++A+ NAPAI+F+
Sbjct: 199 YGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFEQAKANAPAIVFV 258
Query: 282 DEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRP 338
DEIDA+ R G + ++ + QLL MDG +G VI+I ATNRPD +DPAL RP
Sbjct: 259 DEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDVKGGVILIAATNRPDILDPALLRP 318
Query: 339 GRFDREIEVGVPDRQGRKEILQIHTRGMPIEPD 371
GRFDR+I V PD QGR EIL++H +G P+ PD
Sbjct: 319 GRFDRQIAVDRPDMQGRLEILKVHQKGKPVAPD 351
>gb|AAB70882.1| (U77918) spermatogenic cell/sperm-associated Tat-binding protein
homolog Sata [Rattus norvegicus]
Length = 442
Score = 227 bits (573), Expect = 3e-58
Identities = 121/278 (43%), Positives = 175/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 182 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 241
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 242 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 301
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL +MDG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 302 EKAGDREVQRTMLELLNQMDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 361
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA MIA+RR
Sbjct: 362 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRG------- 414
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 415 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 441
Score = 202 bits (508), Expect = 1e-50
Identities = 105/218 (48%), Positives = 147/218 (67%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 179 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 236
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 237 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 296
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL MDG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 297 KRFDSEKAGDREVQRTMLELLNQMDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 356
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+P+ + R I+QIH+R M + PD +++ + +DF
Sbjct: 357 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 394
>dbj|BAB10200.1| (AB023032) cell division protein FtsH [Arabidopsis thaliana]
Length = 704
Score = 227 bits (573), Expect = 3e-58
Identities = 118/238 (49%), Positives = 160/238 (66%), Gaps = 6/238 (2%)
Query: 509 EVPN--VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
EVP V + D+ G + K EL+E V++ LK P+ + A G PKG LL GPPGTGKTLL
Sbjct: 241 EVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 299
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+AVA E+ F + E + +VG +R++F KA+ AP ++FIDEIDA+ +RG
Sbjct: 300 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 359
Query: 627 TDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ N ++ INQLLTEMDG N+GV+V+AATNRPD+LD ALLRPGRFDR + V
Sbjct: 360 AGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 419
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
PD R +I KVH+RG + DVD +++ARRT G+TGAD+ + EAA++A RR L++
Sbjct: 420 PDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKE 477
Score = 181 bits (454), Expect = 3e-44
Identities = 112/297 (37%), Positives = 165/297 (54%), Gaps = 16/297 (5%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
DF S+ +EV + TGVT+ D+ G +++E+++ LK+P+ + LG + PKG
Sbjct: 231 DFGRSKSKFQEVPE---TGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGC 286
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL GPPGTGKTLLA+AVA EA F + E + + G R+R++F++A+ AP I+
Sbjct: 287 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIV 346
Query: 280 FIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
FIDEIDA+ +R G + ++ + QLL MDG VIV+ ATNRPD +D AL
Sbjct: 347 FIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 406
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPGRFDR++ V PD GR +IL++H+RG I D + V + F + +
Sbjct: 407 RPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEA 466
Query: 397 AI----EEVNKSKEEEIPQVLKKIDAELYDEVKTRLID---KLLDELADVTHGFVGA 446
AI E+ + ++EI L++I A E K ++ K L + H VGA
Sbjct: 467 AILAARRELKEISKDEISDALERIIAG--PEKKNAVVSEEKKRLVAYHEAGHALVGA 521
>emb|CAC14432.1| (AJ291500) 26S proteasome subunit 4-like protein [Brassica napus]
Length = 443
Score = 227 bits (573), Expect = 3e-58
Identities = 122/277 (44%), Positives = 170/277 (61%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
V+P + + P + DIGGLE QE++EAVE PL +PE ++ GI PPKG++LYG
Sbjct: 170 VDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYG 229
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA + A F+ V G E++ K++G+ K +RE+FR A +P+++FIDE
Sbjct: 230 EPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 289
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDA+ +R + R R + +LL ++DG V VI ATNR + LDPALLRPGR
Sbjct: 290 IDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGR 349
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I P PD K R IF++HT M L++DV+L+E + ++GADI A+C EA ++A
Sbjct: 350 IDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLA 409
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R KVT DF++A K+
Sbjct: 410 LR-----------------ERRMKVTHPDFKKAKEKV 429
Score = 209 bits (527), Expect = 8e-53
Identities = 105/208 (50%), Positives = 149/208 (71%), Gaps = 3/208 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
+Y DIGGL+ I++I+E +ELPL HPEL+E +GI+PPKGV+LYG PGTGKTLLAKAVAN
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 245
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT--GE 297
+A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FIDEIDA+ KR + GE
Sbjct: 246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGE 305
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR +++DPAL RPGR DR+IE +PD + R+
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 365
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDF 384
I QIHT M + D ++ + ++F
Sbjct: 366 RIFQIHTSKMTLSEDVNLEEFVMTKDEF 393
>gi|11434084 similar to proteasome (prosome, macropain) 26S subunit, ATPase, 6
(H. sapiens) [Homo sapiens]
>gi|1709804|sp|P49719|PRSX_SPETR 26S PROTEASE REGULATORY
SUBUNIT S10B (P44) (CONSERVED ATPASE DOMAIN PROTEIN 44)
>gi|7435740|pir||JC5349 26S proteosome CADp44 -
Spermophilus tridecemlineatus >gi|1045497|gb|AAB40354.1|
(U36395) conserved ATPase domain protein 44
[Spermophilus tridecemlineatus]
>gi|2213932|gb|AAB61616.1| (AF006305) 26S proteasome
regulatory subunit [Homo sapiens]
Length = 389
Score = 227 bits (572), Expect = 4e-58
Identities = 145/411 (35%), Positives = 222/411 (53%), Gaps = 31/411 (7%)
Query: 379 KILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELAD 438
K L+D++++ K ID ++E+ + +E Q K + + +++ ++L +L +
Sbjct: 7 KALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTE 66
Query: 439 VTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMV 498
F+ + A + RR + + K+ + R LD +T + + V
Sbjct: 67 --EKFI---VKATNGPRYVVGCRRQLDKSKL----KPGTRVALDMTTLTIMRYLP--REV 115
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P + NV + +IGGL + +ELRE +E PL PE F+ GI PPKG LLYGP
Sbjct: 116 DPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGP 175
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PGTGKTLLA+AVA++ NF+ V I+ K++GES + IRE+F AR P +IF+DEI
Sbjct: 176 PGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEI 235
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI RR GT +R R + +LL +MDG V +I ATNRPD LDPALLRPGR
Sbjct: 236 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRL 295
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR I + P+E+AR +I K+H + ++D + + + ++G+ GAD+ VC EA M A+
Sbjct: 296 DRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAI 355
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKI 786
R + V +DF +A+RK+ S E+ Y+ +
Sbjct: 356 RADHD-----------------FVVQEDFMKAVRKVADSKKLESKLDYKPV 389
Score = 194 bits (488), Expect = 3e-48
Identities = 100/209 (47%), Positives = 143/209 (67%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V+Y +IGGL + I ++RE+IELPL +PELF+++GI PPKG LLYGPPGTGKTLLA+AVA+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ + F+ + I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL MDG + +V +I ATNRPD +DPAL RPGR DR+I + +P+ Q R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+IL+IH + + + ++K+ + F
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGF 338
>gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotus purpuratus]
Length = 516
Score = 227 bits (572), Expect = 4e-58
Identities = 143/341 (41%), Positives = 204/341 (58%), Gaps = 28/341 (8%)
Query: 465 REGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDV 524
R GK D + + E DE K + + L VE + R+++ PNVHW DI GL +
Sbjct: 186 RGGKSDKDKKAPSGEEGDEKKFDPAGYDKDL--VE-NLERDIVQRNPNVHWADIAGLTEA 242
Query: 525 KQELREAVEWPLKYPEAFKAYGITPP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRG 583
K+ L EAV PL P+ FK GI P KG+L+ GPPGTGKT+LAKAVATE F V
Sbjct: 243 KRLLEEAVVLPLWMPDYFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSS 300
Query: 584 PEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT-DVNRVTDRIINQLLT 642
+ SK+ GESEK +R +F AR AP+ IFIDEID+I +RGT + + R+ ++LL
Sbjct: 301 ASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLI 360
Query: 643 EMDGI-------QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKV 695
+MDG+ + + V+V+AATN P +D AL R R ++ I +P P+ R ++ ++
Sbjct: 361 QMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPEIDGREQLLRI 418
Query: 696 HTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRR 755
+ + +PLADD+DLK +A + +GY+GADI VCR+A+M+AMRR ++ G++ EIR
Sbjct: 419 NLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQ------GLRPEEIRH 472
Query: 756 LAK------VTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ K T DF AL+K+ SV KE + Y E+F
Sbjct: 473 IPKEELNQPSTPADFLLALQKVSKSVGKEDLVKYMAWMEEF 513
Score = 144 bits (360), Expect = 3e-33
Identities = 118/361 (32%), Positives = 181/361 (49%), Gaps = 79/361 (21%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KG 218
D ++ E +++ +R V + DI GL + + E + LPL P+ F+ GI P KG
Sbjct: 213 DKDLVENLERDIVQR-NPNVHWADIAGLTEAKRLLEEAVVLPLWMPDYFK--GIRRPWKG 269
Query: 219 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAI 278
VL+ GPPGTGKT+LAKAVA E F ++ + SKY+GESE+ +R +F+ A AP+
Sbjct: 270 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPST 329
Query: 279 IFIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGL-------KSRGKVIVIGATNRP 328
IFIDEID+I KR TG E +RV ++LL MDG+ +S V+V+ ATN P
Sbjct: 330 IFIDEIDSICSKRG--TGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFP 387
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREG 388
ID ALRR R ++ I + +P+ GR+++L+I+ + +P+ D
Sbjct: 388 WDIDEALRR--RLEKRIYIPLPEIDGREQLLRINLKEVPLADDI---------------- 429
Query: 389 KFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADL 448
++ + +K+D AD+T+
Sbjct: 430 -------------------DLKSIAEKMDGY---------------SGADITN------- 448
Query: 449 AALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLI 508
+ R+A+M A+RR I +G E IP+E L++ T DF AL+ V S +E L+
Sbjct: 449 --VCRDASMMAMRRRI-QGLRPEEIRHIPKEELNQ-PSTPADFLLALQKVSKSVGKEDLV 504
Query: 509 E 509
+
Sbjct: 505 K 505
>pir||T44596 26S proteasome regulatory complex chain p50 [imported] - fruit fly
(Drosophila melanogaster)
>gi|5679018|gb|AAD46823.1|AF160882_1 (AF160882)
BcDNA.GH12068 [Drosophila melanogaster]
>gi|6434948|gb|AAF08386.1|AF145305_1 (AF145305) 26S
proteasome regulatory complex subunit p50 [Drosophila
melanogaster] >gi|7301041|gb|AAF56177.1| (AE003744) Rpt5
gene product [Drosophila melanogaster]
Length = 428
Score = 227 bits (572), Expect = 4e-58
Identities = 121/278 (43%), Positives = 174/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EAV P+ + E FK GI PPKG+LLYGPPGTGKTLLA+
Sbjct: 168 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGKTLLAR 227
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A ++++ F+ + GP+++ ++G+ K +R+ F A++ AP +IFIDE+DAI +R
Sbjct: 228 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 287
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG A + VIAATNR DILDPALLR GR DR I P P+
Sbjct: 288 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 347
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M +++DV+ +EL+R T+ + GA AVC EA MIA+RR+
Sbjct: 348 EEARARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRSAN----- 402
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
VT +DF +A+ ++ + K + YY
Sbjct: 403 ------------SVTHEDFMDAIMEV-QAKKKANLNYY 427
Score = 193 bits (485), Expect = 7e-48
Identities = 102/218 (46%), Positives = 143/218 (64%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E + LP+ H E F+ LGI PPKGVLLYGPPGTGK
Sbjct: 165 EVDERPTE--QYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLYGPPGTGK 222
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + + F+ + GP+++ + G+ + +R+ F A+E APAIIFIDE+DAI
Sbjct: 223 TLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGT 282
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG S + VI ATNR D +DPAL R GR DR+IE
Sbjct: 283 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 342
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P+ + R I+QIH+R M + D +++ + +DF
Sbjct: 343 FPHPNEEARARIMQIHSRKMNVSNDVNFEELSRSTDDF 380
>gb|AAF35993.1|AC005836_5 (AC005836) 26S Protease Regulatory Subunit [Leishmania major]
Length = 396
Score = 227 bits (572), Expect = 4e-58
Identities = 140/391 (35%), Positives = 214/391 (53%), Gaps = 45/391 (11%)
Query: 399 EEVNKSKEEEIPQV-LKKIDAELYDEVKTRLIDKLLDE---LADVTHGFVGADLAALARE 454
E + K+ E + Q LKK++ ++ +++ R +DK+ D+ L + H +VG L + E
Sbjct: 17 EAIKKTVERNVTQARLKKVNDDV--KLQQRELDKVEDQVNALLSIGH-YVGEVLKRVDEE 73
Query: 455 AA----------MAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL-KMVEPSAL 503
+ R+ I+ K+ F A L++T + L + V+P
Sbjct: 74 RFIVKSISGARHLVGYRKSIKPEKLKFGARVA-------LEITTFTIVKVLPREVDPQVY 126
Query: 504 R-EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTG 562
+ + +V + DIGGL+ +++RE +E PL PE F GI PPKG+LLYGPPGTG
Sbjct: 127 SMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELFVRVGIAPPKGVLLYGPPGTG 186
Query: 563 KTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA 622
KTLLAKA+A A F+ + I+ K++GES + IRE+F AR+ P +IFIDE+DAI
Sbjct: 187 KTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFIDEVDAIG 246
Query: 623 PRR--GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLIL 680
+R G+ +R R + +LL +MDG + V VI ATNRPD LD AL+RPGR DR I
Sbjct: 247 SKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGRLDRKIE 306
Query: 681 VPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALE 740
+P P+E R ++ ++H+ + D+D + + + +EG+ GAD+ VC EA M A+R +
Sbjct: 307 IPLPNEAGRLDVLRIHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFAIRAGRD 366
Query: 741 KGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
V DF +A+RK+
Sbjct: 367 -----------------YVENSDFNKAVRKV 380
Score = 208 bits (525), Expect = 1e-52
Identities = 113/238 (47%), Positives = 156/238 (65%), Gaps = 10/238 (4%)
Query: 157 EFTDFNISEKPVKEVEKRMTT--------GVTYEDIGGLKDVIEKIREMIELPLKHPELF 208
E T F I + +EV+ ++ + V+++DIGGL+ + ++RE+IELPL +PELF
Sbjct: 107 EITTFTIVKVLPREVDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELF 166
Query: 209 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVF 268
++GI PPKGVLLYGPPGTGKTLLAKA+A +A F+ I I+ KY GES +RE+F
Sbjct: 167 VRVGIAPPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMF 226
Query: 269 KEAEENAPAIIFIDEIDAIAPKRSEVTGEVE--KRVVAQLLALMDGLKSRGKVIVIGATN 326
A E+ P IIFIDE+DAI KR E + +R + +LL MDG GKV VI ATN
Sbjct: 227 AYAREHEPCIIFIDEVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATN 286
Query: 327 RPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
RPD +D AL RPGR DR+IE+ +P+ GR ++L+IH+ + + D + V+K+ E F
Sbjct: 287 RPDTLDAALMRPGRLDRKIEIPLPNEAGRLDVLRIHSAKITKKGDIDFESVVKLSEGF 344
>pir||T49960 FtsH-like protein F8M21.140 [similarity] - Arabidopsis thaliana
>gi|7671494|emb|CAB89335.1| (AL353993) FtsH-like protein
Pftf precursor-like [Arabidopsis thaliana]
Length = 687
Score = 227 bits (572), Expect = 4e-58
Identities = 116/232 (50%), Positives = 157/232 (67%), Gaps = 4/232 (1%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+ ++D+ G+++ KQ+ E VE+ LK PE F A G PKG+LL GPPGTGKTLLAKA+A
Sbjct: 220 ITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAG 278
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV--- 629
E+ F ++ G E + +VG R++F KA+ +P ++FIDEIDA+ RGT +
Sbjct: 279 EAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGG 338
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
N ++ +NQ+LTEMDG N GV+VIAATNRP+ILD ALLRPGRFDR + V PD + R
Sbjct: 339 NDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGR 398
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
EI KVH+R L DV L +A RT G++GAD+A + EAA++A RR +K
Sbjct: 399 EEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDK 450
Score = 190 bits (477), Expect = 6e-47
Identities = 137/459 (29%), Positives = 227/459 (48%), Gaps = 23/459 (5%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F + K ++E TG+T+ED+ G+ + + E++E LK PE F LG + PKGVL
Sbjct: 204 FGLGSKAKFQMEPN--TGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVL 260
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
L GPPGTGKTLLAKA+A EA F +++G E + + G R R++F +A+ N+P I+F
Sbjct: 261 LTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVF 320
Query: 281 IDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
IDEIDA+ R G + ++ + Q+L MDG VIVI ATNRP+ +D AL R
Sbjct: 321 IDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLR 380
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKA 397
PGRFDR++ VG+PD +GR+EIL++H+R ++ D + F + + A
Sbjct: 381 PGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAA 440
Query: 398 IEEVNKSKEE-EIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAA 456
I + K++ + ++ ID + T++ID A V + VG + A E
Sbjct: 441 ILAGRRGKDKITLTEIDDSIDRIVAGMEGTKMIDG--KSKAIVAYHEVGHAICATLTEGH 498
Query: 457 MAALR-RLIREGKIDFEAETIPREVLDELKVTRRD-FYEALKMVEPSALREVLIEVPNVH 514
+ L+ G+ +P E D V+++ F + + A +V+ P +
Sbjct: 499 DPVQKVTLVPRGQARGLTWFLPGE--DPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEIT 556
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
G L+ V + R+ V +G++ L P ++ + +A S
Sbjct: 557 TGAAGDLQQVTEIARQMV----------TMFGMSEIGPWALTDPAVKQNDVVLRMLARNS 606
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVI 613
+ +A + K +G++ + ++ R R+A ++
Sbjct: 607 MSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLV 645
>gb|AAF91246.1|AF227502_1 (AF227502) proteasome regulatory ATPase subunit 4 [Trypanosoma
brucei]
Length = 399
Score = 227 bits (572), Expect = 4e-58
Identities = 143/404 (35%), Positives = 220/404 (54%), Gaps = 34/404 (8%)
Query: 385 KREGKFTKIIDKAIEE-VNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGF 443
+RE +I K I ++++ E+ + ++ + EL R++D+L L + H F
Sbjct: 13 EREQLRQDVIAKTIRRNESRARVREVAKAMEASERELM-----RVVDQL-SALMSIGH-F 65
Query: 444 VGADLAALAREA----AMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEAL-KMV 498
VG L + E +++ R L+ K + E + L++T L + V
Sbjct: 66 VGEILHKVDEERFIVQSVSGARHLVGYKK-SIKPEKLKIGTRVALEITTLTIVRVLPREV 124
Query: 499 EPSALR-EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
+P +V+ N+ + +IGGL++ +++RE VE PL PE F GI+PPKG+LLYG
Sbjct: 125 DPQVYNMQVMENEKNISFQEIGGLQEQMRQMREVVELPLTNPELFVRVGISPPKGVLLYG 184
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTLLAKA+A+ A F+ + I+ K++GES + +RE+F AR P +IFIDE
Sbjct: 185 PPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDHEPCIIFIDE 244
Query: 618 IDAIAPRR--GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
+DAI +R G+ +R R + +LL +MDG ++ V VI ATNRPD LDPAL+RPGR
Sbjct: 245 VDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLDPALMRPGRL 304
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR I + P+E R ++ K+H + D+D + + +EG+ GAD+ VC EA M A+
Sbjct: 305 DRKIEIGLPNEAGRLDVLKIHASKITKQGDIDYDSIVKLSEGFNGADLRNVCTEAGMFAL 364
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
R + V +DF +A RK+ S E+
Sbjct: 365 RAGRD-----------------YVINEDFNKATRKVADSKKLES 391
Score = 215 bits (542), Expect = 1e-54
Identities = 111/227 (48%), Positives = 154/227 (66%), Gaps = 6/227 (2%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
D + V E EK +++++IGGL++ + ++RE++ELPL +PELF ++GI PPKGV
Sbjct: 125 DPQVYNMQVMENEKN----ISFQEIGGLQEQMRQMREVVELPLTNPELFVRVGISPPKGV 180
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LLYGPPGTGKTLLAKA+A+ +A F+ I I+ KY GES LRE+F A ++ P II
Sbjct: 181 LLYGPPGTGKTLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDHEPCII 240
Query: 280 FIDEIDAIAPKRSEVTGEVE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
FIDE+DAI KR E + +R + +LL MDG + GKV VI ATNRPD +DPAL R
Sbjct: 241 FIDEVDAIGGKRIEGSSSDREVQRTLMELLHQMDGFEKLGKVKVIMATNRPDTLDPALMR 300
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
PGR DR+IE+G+P+ GR ++L+IH + + D D ++K+ E F
Sbjct: 301 PGRLDRKIEIGLPNEAGRLDVLKIHASKITKQGDIDYDSIVKLSEGF 347
>emb|CAA11285.1| (AJ223384) 26S proteasome regulatory ATPase subunit 10b (S10b)
[Manduca sexta]
Length = 396
Score = 226 bits (571), Expect = 6e-58
Identities = 151/381 (39%), Positives = 217/381 (56%), Gaps = 30/381 (7%)
Query: 401 VNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGA--DLAALAREAAMA 458
V+ +E+ KK+ + EV++RL + D+L D+T + + DL AL +
Sbjct: 8 VDTPREKAFQDYRKKLME--HKEVESRL-KAMRDQLKDLTKQYDKSENDLKALQSVGQIV 64
Query: 459 A-LRRLIREGKIDFEAETIPREV------LDELKVTRRDFYEALKMVEPSALREVLIEVP 511
+ + + E K +A PR V LD+ K+ + AL M + +R + EV
Sbjct: 65 GEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKNKL-KGGTRVALDMTTLTIMRHLPREVD 123
Query: 512 ------------NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPP 559
+V + IGGL++ ++LRE +E PL PE F GITPPKG LLYGPP
Sbjct: 124 PLVYNMSHEDPGDVTYAAIGGLQEQIRQLREVIELPLLNPELFVRVGITPPKGCLLYGPP 183
Query: 560 GTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEID 619
GTGKTLLA+AVA++ ANF+ V I+ K++GES + IRE+F AR P +IF+DEID
Sbjct: 184 GTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEID 243
Query: 620 AIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFD 676
AI RR GT +R R + +LL +MDG V +I ATNRPD LDPALLRPGR D
Sbjct: 244 AIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPDTLDPALLRPGRLD 303
Query: 677 RLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMR 736
R I +P P+E+AR EI K+H + ++D + + + ++ + GAD+ VC EA + A+R
Sbjct: 304 RKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIR 363
Query: 737 RALEKGIIKPGMKASEIRRLA 757
E I + MKA +R++A
Sbjct: 364 AEREYIIQEDLMKA--VRKVA 382
Score = 204 bits (513), Expect = 4e-51
Identities = 113/250 (45%), Positives = 158/250 (63%), Gaps = 3/250 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY IGGL++ I ++RE+IELPL +PELF ++GI PPKG LLYGPPGTGKTLLA+AVA+
Sbjct: 137 VTYAAIGGLQEQIRQLREVIELPLLNPELFVRVGITPPKGCLLYGPPGTGKTLLARAVAS 196
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ +A F+ + I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 197 QLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 256
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL MDG S G+V +I ATNRPD +DPAL RPGR DR+IE+ +P+ Q R
Sbjct: 257 DREIQRTLMELLNQMDGFDSLGQVKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQAR 316
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKK 415
EIL+IH + + + V+K+ + F + + + +E I + L K
Sbjct: 317 LEILKIHAAPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMK 376
Query: 416 IDAELYDEVK 425
++ D K
Sbjct: 377 AVRKVADNKK 386
>pir||T08959 proteinase homolog F19B15.70 - Arabidopsis thaliana
>gi|4972050|emb|CAB43918.1| (AL078470) 26S proteasome
subunit 4-like protein [Arabidopsis thaliana]
>gi|7269802|emb|CAB79662.1| (AL161574) 26S proteasome
subunit 4-like protein [Arabidopsis thaliana]
Length = 443
Score = 226 bits (571), Expect = 6e-58
Identities = 122/277 (44%), Positives = 170/277 (61%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
V+P + + P + DIGGLE QE++EAVE PL +PE ++ GI PPKG++LYG
Sbjct: 170 VDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYG 229
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA + A F+ V G E++ K++G+ K +RE+FR A +P+++FIDE
Sbjct: 230 EPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 289
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDA+ +R + R R + +LL ++DG V VI ATNR + LDPALLRPGR
Sbjct: 290 IDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGR 349
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I P PD K R IF++HT M L++DV+L+E + ++GADI A+C EA ++A
Sbjct: 350 IDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLA 409
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R KVT DF++A K+
Sbjct: 410 LR-----------------ERRMKVTHPDFKKAKEKV 429
Score = 208 bits (525), Expect = 1e-52
Identities = 105/208 (50%), Positives = 149/208 (71%), Gaps = 3/208 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
+Y DIGGL+ I++I+E +ELPL HPEL+E +GI+PPKGV+LYG PGTGKTLLAKAVAN
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 245
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TGE 297
+A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FIDEIDA+ KR + GE
Sbjct: 246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 305
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR +++DPAL RPGR DR+IE +PD + R+
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 365
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDF 384
I QIHT M + D ++ + ++F
Sbjct: 366 RIFQIHTSKMTLSEDVNLEEFVMTKDEF 393
>gb|AAF22522.1|AF123391_1 (AF123391) 26S proteasome AAA-ATPase subunit RPT2a [Arabidopsis
thaliana]
Length = 443
Score = 226 bits (571), Expect = 6e-58
Identities = 122/277 (44%), Positives = 170/277 (61%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
V+P + + P + DIGGLE QE++EAVE PL +PE ++ GI PPKG++LYG
Sbjct: 170 VDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYG 229
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA + A F+ V G E++ K++G+ K +RE+FR A +P+++FIDE
Sbjct: 230 EPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 289
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDA+ +R + R R + +LL ++DG V VI ATNR + LDPALLRPGR
Sbjct: 290 IDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGR 349
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I P PD K R IF++HT M L++DV+L+E + ++GADI A+C EA ++A
Sbjct: 350 IDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLA 409
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R KVT DF++A K+
Sbjct: 410 LR-----------------ERRMKVTHPDFKKAKEKV 429
Score = 208 bits (525), Expect = 1e-52
Identities = 105/208 (50%), Positives = 149/208 (71%), Gaps = 3/208 (1%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
+Y DIGGL+ I++I+E +ELPL HPEL+E +GI+PPKGV+LYG PGTGKTLLAKAVAN
Sbjct: 186 SYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 245
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV--TGE 297
+A F+ + G E++ KY G+ + +RE+F+ A++ +P+I+FIDEIDA+ KR + GE
Sbjct: 246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE 305
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V VI ATNR +++DPAL RPGR DR+IE +PD + R+
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 365
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDF 384
I QIHT M + D ++ + ++F
Sbjct: 366 RIFQIHTSKMTLSEDVNLEEFVMTKDEF 393
>gb|AAA85134.1| (U43720) Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 226 bits (570), Expect = 8e-58
Identities = 120/264 (45%), Positives = 161/264 (60%), Gaps = 5/264 (1%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P E + +D IGGL + +ELRE +E PLK PE F+ GI PPKG+LLYGP
Sbjct: 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGP 223
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PGTGKTLLAKAVA ANFI I+ K++GES + IRE+F A++ P +IF+DE+
Sbjct: 224 PGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEV 283
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI RR GT +R R + +LLT+MDG +I ATNRPD LDPALLRPGR
Sbjct: 284 DAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRL 343
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR + +P P+E R EIFK+HT + + D + + ++G+ GADI EA A+
Sbjct: 344 DRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403
Query: 736 RRALEKGIIKPGMKASEIRRLAKV 759
R ++ I P +R++A+V
Sbjct: 404 RD--DRDHINPDDLMKAVRKVAEV 425
Score = 203 bits (511), Expect = 6e-51
Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 7/239 (2%)
Query: 153 VQITEFTDFNISEKPVKEVEKRMTT----GVTYEDIGGLKDVIEKIREMIELPLKHPELF 208
+ IT T I + + MT+ +T++ IGGL + I ++RE+IELPLK+PE+F
Sbjct: 148 LDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207
Query: 209 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVF 268
+++GI+PPKGVLLYGPPGTGKTLLAKAVA A FI I+ KY GES +RE+F
Sbjct: 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMF 267
Query: 269 KEAEENAPAIIFIDEIDAIAPKR-SEVTGEVE--KRVVAQLLALMDGLKSRGKVIVIGAT 325
A+E+ P IIF+DE+DAI +R SE T +R + +LL MDG + G+ +I AT
Sbjct: 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327
Query: 326 NRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
NRPD +DPAL RPGR DR++E+ +P+ GR EI +IHT + +F + +K+ + F
Sbjct: 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGF 386
>sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(SPERMATOGENIC CELL/SPERM-ASSOCIATED TAT-BINDING PROTEIN
HOMOLOG SATA) >gi|1395184|dbj|BAA11939.1| (D83522)
proteasomal ATPase (rat TBP1) [Rattus norvegicus]
Length = 439
Score = 226 bits (570), Expect = 8e-58
Identities = 120/278 (43%), Positives = 175/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 179 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 238
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 239 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 298
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 299 EKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 358
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA MIA+RR
Sbjct: 359 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRG------- 411
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 412 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 438
Score = 201 bits (505), Expect = 3e-50
Identities = 104/218 (47%), Positives = 147/218 (66%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 176 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 234 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 294 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+P+ + R I+QIH+R M + PD +++ + +DF
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 391
>gi|6324833 ATPase; component of the 26S proteasome cap subunit; Rpt4p
[Saccharomyces cerevisiae]
>gi|2506090|sp|P53549|SUG2_YEAST PROBABLE 26S PROTEASE
SUBUNIT SUG2 (PROTEASOMAL CAP SUBUNIT)
>gi|2133163|pir||S67156 26S proteasome regulatory
particle chain RPT4 - yeast (Saccharomyces cerevisiae)
>gi|1420585|emb|CAA99481.1| (Z75167) ORF YOR259c
[Saccharomyces cerevisiae] >gi|1931623|gb|AAB51594.1|
(U93262) proteasome cap subunit [Saccharomyces
cerevisiae]
Length = 437
Score = 226 bits (570), Expect = 8e-58
Identities = 120/264 (45%), Positives = 161/264 (60%), Gaps = 5/264 (1%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P E + +D IGGL + +ELRE +E PLK PE F+ GI PPKG+LLYGP
Sbjct: 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGP 223
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PGTGKTLLAKAVA ANFI I+ K++GES + IRE+F A++ P +IF+DE+
Sbjct: 224 PGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEV 283
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI RR GT +R R + +LLT+MDG +I ATNRPD LDPALLRPGR
Sbjct: 284 DAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRL 343
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR + +P P+E R EIFK+HT + + D + + ++G+ GADI EA A+
Sbjct: 344 DRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403
Query: 736 RRALEKGIIKPGMKASEIRRLAKV 759
R ++ I P +R++A+V
Sbjct: 404 RD--DRDHINPDDLMKAVRKVAEV 425
Score = 203 bits (511), Expect = 6e-51
Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 7/239 (2%)
Query: 153 VQITEFTDFNISEKPVKEVEKRMTT----GVTYEDIGGLKDVIEKIREMIELPLKHPELF 208
+ IT T I + + MT+ +T++ IGGL + I ++RE+IELPLK+PE+F
Sbjct: 148 LDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207
Query: 209 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVF 268
+++GI+PPKGVLLYGPPGTGKTLLAKAVA A FI I+ KY GES +RE+F
Sbjct: 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMF 267
Query: 269 KEAEENAPAIIFIDEIDAIAPKR-SEVTGEVE--KRVVAQLLALMDGLKSRGKVIVIGAT 325
A+E+ P IIF+DE+DAI +R SE T +R + +LL MDG + G+ +I AT
Sbjct: 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327
Query: 326 NRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
NRPD +DPAL RPGR DR++E+ +P+ GR EI +IHT + +F + +K+ + F
Sbjct: 328 NRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGF 386
>gi|6754410 katanin p60 (ATPase-containing) subunit A1 [Mus musculus]
>gi|5326894|gb|AAD42087.1|AF153197_1 (AF153197)
lipotransin [Mus musculus]
Length = 491
Score = 226 bits (570), Expect = 8e-58
Identities = 141/312 (45%), Positives = 191/312 (61%), Gaps = 32/312 (10%)
Query: 489 RDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
+D EAL+ R+++ + PNV W DI L + K+ L+EAV P+ PE FK GI
Sbjct: 189 KDLVEALE-------RDIISQNPNVRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIR 239
Query: 549 PP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
P KG+L+ GPPGTGKTLLAKAVATE + F V + SK+ GESEK +R +F AR
Sbjct: 240 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 299
Query: 608 AAPTVIFIDEIDAIAPRRGT-DVNRVTDRIINQLLTEMDGI---QENAG----VVVIAAT 659
+P IFIDEID+I RRGT + + + R+ +LL +MDG+ EN V+V+AAT
Sbjct: 300 YSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAAT 359
Query: 660 NRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYT 719
N P +D AL R R ++ I +P P K R E+ ++ R + LADDV+L +A EGY+
Sbjct: 360 NFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYS 417
Query: 720 GADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGP 773
GADI VCR+A+++AMRR +E G+ EIR L++ TM+DFE AL+KI
Sbjct: 418 GADITNVCRDASLMAMRRRIE------GLTPEEIRNLSREAMHMPTTMEDFEMALKKISK 471
Query: 774 SVSKETMEYYRK 785
SVS +E Y K
Sbjct: 472 SVSAADIERYEK 483
Score = 140 bits (349), Expect = 6e-32
Identities = 90/250 (36%), Positives = 139/250 (55%), Gaps = 13/250 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
V + DI L + + ++E + LP+ PE F+ GI P KGVL+ GPPGTGKTLLAKAVA
Sbjct: 206 VRWYDIADLVEAKKLLQEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVA 263
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A +PA IFIDEID+I +R +
Sbjct: 264 TECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEH 323
Query: 297 EVEKRVVAQLLALMDGLKSRGK-------VIVIGATNRPDAIDPALRRPGRFDREIEVGV 349
E +R+ A+LL MDG+ + V+V+ ATN P ID ALRR R ++ I + +
Sbjct: 324 EASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPL 381
Query: 350 PDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEI 409
P +GR+E+L+I R + + D + + +E + D ++ + + E
Sbjct: 382 PSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLT 441
Query: 410 PQVLKKIDAE 419
P+ ++ + E
Sbjct: 442 PEEIRNLSRE 451
>gi|11437005 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
sapiens]
Length = 423
Score = 226 bits (570), Expect = 8e-58
Identities = 120/278 (43%), Positives = 175/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 163 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 222
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 223 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 282
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 283 EKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 342
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA MIA+RR
Sbjct: 343 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRG------- 395
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 396 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 422
Score = 201 bits (505), Expect = 3e-50
Identities = 104/218 (47%), Positives = 147/218 (66%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 160 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 217
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 218 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 277
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 278 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 337
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+P+ + R I+QIH+R M + PD +++ + +DF
Sbjct: 338 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 375
>gi|11467496 ORF 644 [Odontella sinensis] >gi|1706925|sp|P49825|FTSH_ODOSI CELL
DIVISION PROTEIN FTSH HOMOLOG >gi|7446573|pir||S78301
hypothetical protein 644 - Odontella sinensis
chloroplast >gi|1185191|emb|CAA91674.1| (Z67753) ORF 644
[Odontella sinensis]
Length = 644
Score = 226 bits (569), Expect = 1e-57
Identities = 115/227 (50%), Positives = 151/227 (65%), Gaps = 4/227 (1%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V + DI G+++ K E E V + LK P+ + G PKGILL GPPGTGKTLLAKA+A
Sbjct: 183 VSFKDIAGIDEAKTEFEEIVSF-LKEPDKYTIVGAKIPKGILLVGPPGTGKTLLAKAIAN 241
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV--- 629
E+ F +V G E + ++G +R++F+KA + AP ++FIDEIDA+ RG V
Sbjct: 242 EADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGG 301
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
N ++ +NQLLTEMDG +EN GV+V+ ATNR DILD ALLRPGRFDR + V PD R
Sbjct: 302 NDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGR 361
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMR 736
I KVH R PL +DV L +LA RT G++GAD+A + EAA++A R
Sbjct: 362 VGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATR 408
Score = 192 bits (484), Expect = 9e-48
Identities = 97/209 (46%), Positives = 136/209 (64%), Gaps = 4/209 (1%)
Query: 166 KPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPP 225
K E+R TGV+++DI G+ + + E++ LK P+ + +G + PKG+LL GPP
Sbjct: 170 KSTARFERRPDTGVSFKDIAGIDEAKTEFEEIVSF-LKEPDKYTIVGAKIPKGILLVGPP 228
Query: 226 GTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEID 285
GTGKTLLAKA+ANEA+ F ++ G E + + G R+R++FK+A ENAP I+FIDEID
Sbjct: 229 GTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEID 288
Query: 286 AIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFD 342
A+ +R G + ++ + QLL MDG K VIV+GATNR D +D AL RPGRFD
Sbjct: 289 AVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFD 348
Query: 343 REIEVGVPDRQGRKEILQIHTRGMPIEPD 371
R++ V +PDR GR IL++H R P+ D
Sbjct: 349 RQVTVNLPDRLGRVGILKVHARNKPLGED 377
>gi|11467752 hypothetical chloroplast RF25 [Guillardia theta]
>gi|6016057|sp|O78516|FTSH_GUITH CELL DIVISION PROTEIN
FTSH HOMOLOG >gi|3603077|gb|AAC35738.1| (AF041468)
hypothetical chloroplast RF25 [Guillardia theta]
Length = 631
Score = 226 bits (569), Expect = 1e-57
Identities = 122/293 (41%), Positives = 183/293 (61%), Gaps = 12/293 (4%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V ++D+ G+++ K+E E V + LK PE F A G PKG+LL GPPGTGKTLLAKA+A
Sbjct: 170 VTFNDVAGVDEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDV--- 629
E+ F ++ G E + +VG +R++F+KA++ +P ++FIDEIDA+ +RGT +
Sbjct: 229 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGG 288
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
N ++ +NQLLTEMDG + N G+++IAATNR D+LD ALLRPGRFDR + V PD K R
Sbjct: 289 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGR 348
Query: 690 FEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMK 749
EI VH R L + L+ +A+RT G++GAD+A + EAA++ RR +K I +
Sbjct: 349 LEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRR-KKQITISEID 407
Query: 750 ASEIRRLAKVTMKDFEE-------ALRKIGPSVSKETMEYYRKIQEQFKQARG 795
AS R +A + K + A ++G ++ ++++ +Q+ RG
Sbjct: 408 ASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDPVQKVTLVPRG 460
Score = 190 bits (478), Expect = 5e-47
Identities = 115/318 (36%), Positives = 169/318 (52%), Gaps = 14/318 (4%)
Query: 135 VLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKI 194
+ G F ++ P G Q F K + TGVT+ D+ G+ + E+
Sbjct: 132 IAGLAFLFRRSSNLPGGPGQAMNFG------KSKARFQMEAKTGVTFNDVAGVDEAKEEF 185
Query: 195 REMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMS 254
E++ LK PE F +G + PKGVLL GPPGTGKTLLAKA+A EA F +I+G E +
Sbjct: 186 EEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 244
Query: 255 KYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMD 311
+ G R+R++FK+A+EN+P I+FIDEIDA+ +R G + ++ + QLL MD
Sbjct: 245 MFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 304
Query: 312 GLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPD 371
G + +I+I ATNR D +D AL RPGRFDR++ V VPD +GR EIL +H R ++
Sbjct: 305 GFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLS 364
Query: 372 FRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEE-EIPQVLKKIDAELYDEVKTRLID 430
+ + K F + + AI + K++ I ++ ID + L+D
Sbjct: 365 ISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDASIDRVIAGMEGKALVD 424
Query: 431 ---KLLDELADVTHGFVG 445
K L +V H +G
Sbjct: 425 SKTKRLIAYHEVGHAIIG 442
>gb|AAD50055.1|AC007980_20 (AC007980) ATP-dependent metalloprotease [Arabidopsis thaliana]
Length = 716
Score = 226 bits (569), Expect = 1e-57
Identities = 118/238 (49%), Positives = 159/238 (66%), Gaps = 6/238 (2%)
Query: 509 EVPN--VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
EVP V + D+ G + K EL+E V++ LK P+ + A G PKG LL GPPGTGKTLL
Sbjct: 253 EVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 311
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+AVA E+ F + E + +VG +R++F KA+ AP ++FIDEIDA+ +RG
Sbjct: 312 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 371
Query: 627 TDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ N ++ INQLLTEMDG N+GV+V+AATNRPD+LD ALLRPGRFDR + V
Sbjct: 372 AGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 431
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
PD R +I +VH+RG L DVD ++ARRT G+TGAD+ + EAA++A RR L++
Sbjct: 432 PDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRELKE 489
Score = 181 bits (455), Expect = 2e-44
Identities = 112/297 (37%), Positives = 165/297 (54%), Gaps = 16/297 (5%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
DF S+ +EV + TGV++ D+ G +++E+++ LK+P+ + LG + PKG
Sbjct: 243 DFGRSKSKFQEVPE---TGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGC 298
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL GPPGTGKTLLA+AVA EA F + E + + G R+R++F++A+ AP I+
Sbjct: 299 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIV 358
Query: 280 FIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
FIDEIDA+ +R G + ++ + QLL MDG VIV+ ATNRPD +D AL
Sbjct: 359 FIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 418
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPGRFDR++ V PD GR +ILQ+H+RG + D D V + F + +
Sbjct: 419 RPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEA 478
Query: 397 AI----EEVNKSKEEEIPQVLKKIDAELYDEVKTRLID---KLLDELADVTHGFVGA 446
AI E+ + ++EI L++I A E K ++ K L + H VGA
Sbjct: 479 AILAARRELKEISKDEISDALERIIAG--PEKKNAVVSEEKKRLVAYHEAGHALVGA 533
>sp|Q39102|FTSH_ARATH CELL DIVISION PROTEIN FTSH HOMOLOG PRECURSOR
>gi|1483215|emb|CAA68141.1| (X99808) chloroplast FtsH
protease [Arabidopsis thaliana]
Length = 709
Score = 225 bits (568), Expect = 1e-57
Identities = 118/238 (49%), Positives = 160/238 (66%), Gaps = 6/238 (2%)
Query: 509 EVPN--VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
EVP V + D+ G + K EL+E V++ LK P+ + A G PKG LL GPPGTGKTLL
Sbjct: 253 EVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 311
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+AVA E+ F + R E + +VG +R++F KA+ AP ++FIDEIDA+ +RG
Sbjct: 312 ARAVAGEAGVPFFSSRPQEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRG 371
Query: 627 TDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ N ++ INQLLTEMDG N+GV+V+AATNRPD+LD ALLRPGRFDR + V
Sbjct: 372 AGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDR 431
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
PD R +I +VH+RG L DVD ++ARRT G+TGAD+ + EAA++A RR +++
Sbjct: 432 PDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEAAILAARRDVKE 489
Score = 181 bits (454), Expect = 3e-44
Identities = 112/297 (37%), Positives = 165/297 (54%), Gaps = 16/297 (5%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
DF S+ +EV + TGV++ D+ G +++E+++ LK+P+ + LG + PKG
Sbjct: 243 DFGRSKSKFQEVPE---TGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGC 298
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL GPPGTGKTLLA+AVA EA F + E + + G R+R++F++A+ AP I+
Sbjct: 299 LLVGPPGTGKTLLARAVAGEAGVPFFSSRPQEFVELFVGVGASRVRDLFEKAKSKAPCIV 358
Query: 280 FIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
FIDEIDA+ +R G + ++ + QLL MDG VIV+ ATNRPD +D AL
Sbjct: 359 FIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 418
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPGRFDR++ V PD GR +ILQ+H+RG + D D V + F + +
Sbjct: 419 RPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLMNEA 478
Query: 397 AI----EEVNKSKEEEIPQVLKKIDAELYDEVKTRLID---KLLDELADVTHGFVGA 446
AI +V + ++EI L++I A E K ++ K L + H VGA
Sbjct: 479 AILAARRDVKEISKDEISDALERIIAG--PEKKNAVVSEEKKRLVAYHEAGHALVGA 533
>gi|6679503 proteasome (prosome, macropain) 26S subunit, ATPase 3; Tat binding
protein 1 [Mus musculus] >gi|3510277|dbj|BAA32559.1|
(D49686) Tat binding protein-1 [Mus musculus]
>gi|10697242|dbj|BAB16347.1| (AB040858) proteasomal
ATPase [Mus musculus]
Length = 442
Score = 225 bits (568), Expect = 1e-57
Identities = 114/232 (49%), Positives = 159/232 (68%), Gaps = 3/232 (1%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 182 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 241
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 242 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 301
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 302 EKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 361
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA MIA+RR
Sbjct: 362 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRR 413
Score = 202 bits (509), Expect = 1e-50
Identities = 110/245 (44%), Positives = 160/245 (64%), Gaps = 6/245 (2%)
Query: 143 VVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPL 202
+V + S ++ T TD++ K + EV++R T Y DIGGL I+++ E I LP+
Sbjct: 153 LVGVNKDSYLILETLPTDYDSRVKAM-EVDERPTE--QYSDIGGLDKQIQELVEAIVLPM 209
Query: 203 KHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 262
H E FE LGI+PPKGVL+YGPPGTGKTLLA+A A + A F+ + GP+++ + G+ +
Sbjct: 210 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 269
Query: 263 RLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGEVE-KRVVAQLLALMDGLKSRGKV 319
+R+ F A+E AP+IIFIDE+DAI KR SE G+ E +R + +LL +DG + +V
Sbjct: 270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 329
Query: 320 IVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLK 379
VI ATNR D +DPAL R GR DR+IE +P+ + R I+QIH+R M + PD +++ +
Sbjct: 330 KVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389
Query: 380 ILEDF 384
+DF
Sbjct: 390 CTDDF 394
>gi|4506215 proteasome (prosome, macropain) 26S subunit, ATPase, 6; p42 [Homo
sapiens] >gi|2492522|sp|Q92524|PRSX_HUMAN 26S PROTEASE
REGULATORY SUBUNIT S10B (PROTEASOME SUBUNIT P42)
>gi|7435741|pir||S71316 multicatalytic endopeptidase
complex (EC 3.4.99.46) p42 chain - human
>gi|1526426|dbj|BAA11338.1| (D78275) proteasome subunit
p42 [Homo sapiens]
Length = 389
Score = 225 bits (567), Expect = 2e-57
Identities = 144/411 (35%), Positives = 221/411 (53%), Gaps = 31/411 (7%)
Query: 379 KILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELAD 438
K L+D++++ K ID ++E+ + +E Q K + + +++ ++L +L +
Sbjct: 7 KALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTE 66
Query: 439 VTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMV 498
F+ + A + RR + + K+ + R LD +T + + V
Sbjct: 67 --EKFI---VKATNGPRYVVGCRRQLDKSKL----KPGTRVALDMTTLTIMRYLP--REV 115
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P + NV + +IGGL + +ELRE +E PL PE F+ GI PPKG LLYGP
Sbjct: 116 DPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGP 175
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PGTGKTLLA+AVA++ NF+ V I+ K++GES + IRE+F AR P +IF+DEI
Sbjct: 176 PGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEI 235
Query: 619 DAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI RR GT +R R + +LL +MDG V + ATNRPD LDPALLRPGR
Sbjct: 236 DAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMTMATNRPDTLDPALLRPGRL 295
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR I + P+E+AR +I K+H + ++D + + + ++G+ GAD+ VC EA M A+
Sbjct: 296 DRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAI 355
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKI 786
R + V +DF +A+RK+ S E+ Y+ +
Sbjct: 356 RADHD-----------------FVVQEDFMKAVRKVADSKKLESKLDYKPV 389
Score = 192 bits (483), Expect = 1e-47
Identities = 99/209 (47%), Positives = 142/209 (67%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V+Y +IGGL + I ++RE+IELPL +PELF+++GI PPKG LLYGPPGTGKTLLA+AVA+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ + F+ + I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL MDG + +V + ATNRPD +DPAL RPGR DR+I + +P+ Q R
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMTMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+IL+IH + + + ++K+ + F
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGF 338
>sp|O16368|PRS4_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4 >gi|7500175|pir||T31800
hypothetical protein F29G9.5 - Caenorhabditis elegans
>gi|2315358|gb|AAB65906.1| (AF016440) strong similarity
to the AAA family of ATPases [Caenorhabditis elegans]
Length = 443
Score = 224 bits (566), Expect = 2e-57
Identities = 119/282 (42%), Positives = 173/282 (61%), Gaps = 29/282 (10%)
Query: 507 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
L + P + D+GGL+ QE++EAVE PL +PE ++ GI PPKG++LYG PGTGKTLL
Sbjct: 179 LEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLL 238
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR- 625
AKAVA ++ A F+ + G E++ K++G+ K +RE+FR A + AP+++FIDEIDA+ +R
Sbjct: 239 AKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRY 298
Query: 626 --GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ R R + +LL ++DG V V+ ATNR + LDPAL+RPGR DR I P
Sbjct: 299 DSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPL 358
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PDEK + IF++HT M L +V+L+E + +GADI A+C EA ++A+R
Sbjct: 359 PDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALR------- 411
Query: 744 IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
R +VTM+DF++ SKE + Y +K
Sbjct: 412 ----------ERRMRVTMEDFQK---------SKENVLYRKK 434
Score = 212 bits (534), Expect = 1e-53
Identities = 115/257 (44%), Positives = 165/257 (63%), Gaps = 15/257 (5%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
TY D+GGL I++I+E +ELPL HPE +E++GI PPKGV+LYG PGTGKTLLAKAVAN+
Sbjct: 186 TYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQ 245
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR--SEVTGE 297
+A F+ I G E++ KY G+ + +RE+F+ AEENAP+I+FIDEIDA+ KR S GE
Sbjct: 246 TSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGE 305
Query: 298 VE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
E +R + +LL +DG SRG V V+ ATNR +++DPAL RPGR DR+IE +PD + ++
Sbjct: 306 REIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKR 365
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFK--------REGKFTKIIDK----AIEEVNKS 404
I QIHT M + + ++ + ++ E + ++ +E+ KS
Sbjct: 366 RIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKS 425
Query: 405 KEEEIPQVLKKIDAELY 421
KE + + + ELY
Sbjct: 426 KENVLYRKKEGAPEELY 442
>emb|CAA18796.1| (AL023093) cell division protein FtsH [Mycobacterium leprae]
Length = 787
Score = 224 bits (566), Expect = 2e-57
Identities = 117/255 (45%), Positives = 167/255 (64%), Gaps = 7/255 (2%)
Query: 501 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPG 560
S +++ ++P + D+ G+++ +EL E ++ L+ P ++ G PKG+LLYGPPG
Sbjct: 148 SRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDF-LQNPCRYQTLGAKIPKGVLLYGPPG 206
Query: 561 TGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDA 620
TGKTLLA+AVA E+ F + G + + +VG +R++F +A+Q +P +IF+DEIDA
Sbjct: 207 TGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIFVDEIDA 266
Query: 621 IAPRRGTDVNRVTD---RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDR 677
+ +RGT + D + +NQLL EMDG + AGV++IAATNRPDILDPALLRPGRFDR
Sbjct: 267 VGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDR 326
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
I V PD R + +VH++G P+ADD DL LA+RT G TGAD+A V EAA++ R
Sbjct: 327 QIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRTVGMTGADLANVVNEAALLTAR- 385
Query: 738 ALEKGIIKPGMKASE 752
E G++ G E
Sbjct: 386 --ENGLVITGPALEE 398
Score = 190 bits (477), Expect = 6e-47
Identities = 97/222 (43%), Positives = 143/222 (63%), Gaps = 5/222 (2%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F + K++ K M T+ D+ G+ + +E++ E+ + L++P ++ LG + PKGVL
Sbjct: 143 FGFGKSRAKQLSKDMPK-TTFADVAGVDEAVEELYEIKDF-LQNPCRYQTLGAKIPKGVL 200
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
LYGPPGTGKTLLA+AVA EA F I+G + + + G R+R++F +A++N+P IIF
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFDQAKQNSPCIIF 260
Query: 281 IDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
+DEIDA+ +R G + ++ + QLL MDG R VI+I ATNRPD +DPAL R
Sbjct: 261 VDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLR 320
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLK 379
PGRFDR+I V PD GR+ +L++H++G PI D D + K
Sbjct: 321 PGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAK 362
>gi|4506211 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
sapiens] >gi|107855|pir||A34832 Tat-binding protein-1 -
human >gi|338700|gb|AAA36666.1| (M34079) tat binding
protein-1 (tbp-1) [Homo sapiens]
Length = 404
Score = 224 bits (564), Expect = 4e-57
Identities = 119/278 (42%), Positives = 174/278 (61%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 144 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 203
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 204 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 263
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 264 EKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 323
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA MIA+ R
Sbjct: 324 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALARG------- 376
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 377 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 403
Score = 201 bits (505), Expect = 3e-50
Identities = 104/218 (47%), Positives = 147/218 (66%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 141 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 198
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 199 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 258
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 259 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 318
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+P+ + R I+QIH+R M + PD +++ + +DF
Sbjct: 319 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 356
>sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(PROTEASOME SUBUNIT P50)
Length = 439
Score = 224 bits (564), Expect = 4e-57
Identities = 119/278 (42%), Positives = 174/278 (61%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 179 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 238
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 239 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 298
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 299 EKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 358
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA MIA+ R
Sbjct: 359 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALARG------- 411
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 412 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 438
Score = 201 bits (505), Expect = 3e-50
Identities = 104/218 (47%), Positives = 147/218 (66%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 176 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 234 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 294 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+P+ + R I+QIH+R M + PD +++ + +DF
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 391
>sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|556560|dbj|BAA04614.1| (D17788)
rice homologue of Tat binding protein [Oryza sativa]
Length = 429
Score = 223 bits (562), Expect = 7e-57
Identities = 117/278 (42%), Positives = 173/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P ++DIGGLE QEL EA+ P+ + + F+ GI PPKG+LLYGPPGTGKTL+A+
Sbjct: 169 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMAR 228
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ +P +IFIDEIDAI +R
Sbjct: 229 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 288
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 289 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPS 348
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M+A+R
Sbjct: 349 EEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR--------- 399
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
R +VT +DF E + ++ + K ++ YY
Sbjct: 400 --------RDATEVTHEDFNEGIIQV-QAKKKSSLNYY 428
Score = 203 bits (512), Expect = 5e-51
Identities = 105/218 (48%), Positives = 149/218 (68%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV+++ T Y DIGGL+ I+++ E I LP+ H + F+KLGI PPKGVLLYGPPGTGK
Sbjct: 166 EVDEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGK 223
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+A+A A + NA F+ + GP+++ + G+ + +R+ F+ A+E +P IIFIDEIDAI
Sbjct: 224 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 283
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SEV+G+ E +R + +LL +DG S ++ VI ATNR D +DPAL R GR DR+IE
Sbjct: 284 KRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIE 343
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P + R ILQIH+R M + PD +++ + +DF
Sbjct: 344 FPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDF 381
>gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsis thaliana]
>gi|6751710|gb|AAF27692.1|AC018848_9 (AC018848) CAD
ATPase (AAA1); 35570-33019 [Arabidopsis thaliana]
Length = 523
Score = 223 bits (562), Expect = 7e-57
Identities = 132/307 (42%), Positives = 187/307 (59%), Gaps = 27/307 (8%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP-KGILLYGPPGTG 562
R+VL P V WDD+ GL + K+ L EAV PL PE F+ GI P KG+L++GPPGTG
Sbjct: 227 RDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTG 284
Query: 563 KTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA 622
KTLLAKAVATE F V + SKW GESE+ +R +F AR AP+ IFIDEID++
Sbjct: 285 KTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLC 344
Query: 623 -PRRGTDVNRVTDRIINQLLTEMDGIQENAG--------VVVIAATNRPDILDPALLRPG 673
R G+ + + R+ ++LL ++DG+ A V+V+AATN P +D AL R
Sbjct: 345 NSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR-- 402
Query: 674 RFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMI 733
R ++ I +P PD ++R + ++ R + +A DV+++++ARRTEGY+G D+ VCR+A+M
Sbjct: 403 RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMN 462
Query: 734 AMRRALEKGIIKPGMKASEIRRLAK-------VTMKDFEEALRKIGPSVSKETMEYYRKI 786
MRR + G EI+ ++K V M DFEEA+RK+ PSVS +E + K
Sbjct: 463 GMRRKI------AGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKW 516
Query: 787 QEQFKQA 793
+F A
Sbjct: 517 LSEFGSA 523
Score = 148 bits (371), Expect = 2e-34
Identities = 97/257 (37%), Positives = 141/257 (54%), Gaps = 28/257 (10%)
Query: 176 TTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAK 234
T GV ++D+ GL + + E + LPL PE F+ GI P KGVL++GPPGTGKTLLAK
Sbjct: 233 TPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAK 290
Query: 235 AVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEV 294
AVA E F ++ + SK+ GESE +R +F A AP+ IFIDEID++ R
Sbjct: 291 AVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSRGG- 349
Query: 295 TGEVE--KRVVAQLLALMDGLK--------SRGKVIVIGATNRPDAIDPALRRPGRFDRE 344
+GE E +RV ++LL +DG+ SR V+V+ ATN P ID ALRR R ++
Sbjct: 350 SGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKR 407
Query: 345 IEVGVPDRQGRKEILQIHTRGMPIEPD------------FRKDDVLKILEDFKREGKFTK 392
I + +PD + RK ++ I+ R + + D + DD+ + D G K
Sbjct: 408 IYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRK 467
Query: 393 IIDKAIEEVNKSKEEEI 409
I K +E+ +++I
Sbjct: 468 IAGKTRDEIKNMSKDDI 484
>sp|Q39444|FTSH_CAPAN CELL DIVISION PROTEIN FTSH HOMOLOG PRECURSOR
>gi|2129924|pir||S58298 ATPase - pepper (fragment)
>gi|929013|emb|CAA62084.1| (X90472) ATPase [Capsicum
annuum]
Length = 662
Score = 222 bits (561), Expect = 9e-57
Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 6/238 (2%)
Query: 509 EVPN--VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
EVP V + D+ G + K EL+E V++ LK P+ + A G PKG LL GPPGTGKTLL
Sbjct: 221 EVPETGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 279
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+AVA E+ F + E + +VG +R +F A+ AP ++FIDEIDA+ +RG
Sbjct: 280 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRHLFENAKSKAPCIVFIDEIDAVGRQRG 339
Query: 627 TDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ N ++ INQLLTEMDG N+GV+V+AATNRPD+LD ALLRPG+FDR + V
Sbjct: 340 AGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDR 399
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
PD R I +VH+RG LA DVD ++ARRT G+TGAD+ + EAA++A RR L++
Sbjct: 400 PDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKE 457
Score = 179 bits (449), Expect = 1e-43
Identities = 110/297 (37%), Positives = 162/297 (54%), Gaps = 16/297 (5%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
DF S+ +EV + TGVT+ D+ G +++E+++ LK+P+ + LG + PKG
Sbjct: 211 DFGRSKSKFQEVPE---TGVTFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGC 266
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL GPPGTGKTLLA+AVA EA F + E + + G R+R +F+ A+ AP I+
Sbjct: 267 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRHLFENAKSKAPCIV 326
Query: 280 FIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
FIDEIDA+ +R G + ++ + QLL MDG VIV+ ATNRPD +D AL
Sbjct: 327 FIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 386
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPG+FDR++ V PD GR ILQ+H+RG + D D + + F + +
Sbjct: 387 RPGKFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEA 446
Query: 397 AI----EEVNKSKEEEIPQVLKKIDAELYDEVKTRLID---KLLDELADVTHGFVGA 446
AI ++ + ++EI L++I A E K ++ K L + H VGA
Sbjct: 447 AILAARRDLKEISKDEISDALERIIAG--PEKKNAVVSDEKKKLVAYHEAGHALVGA 501
>sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2564337|dbj|BAA22951.1| (D88663)
Tat binding protein 1 [Brassica rapa]
Length = 424
Score = 222 bits (561), Expect = 9e-57
Identities = 118/278 (42%), Positives = 174/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P ++DIGGLE QEL EA+ P+ + E F+ G+ PPKG+LLYGPPGTGKTL+A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ AP +IFIDEIDAI +R
Sbjct: 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS 283
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 284 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M+A+RR
Sbjct: 344 EEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-------- 395
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
A+E+ +DF E + ++ + K ++ YY
Sbjct: 396 ---DATEVNH------EDFNEGIIQV-QAKKKASLNYY 423
Score = 206 bits (519), Expect = 7e-52
Identities = 107/218 (49%), Positives = 149/218 (68%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV+++ T Y DIGGL+ I+++ E I LP+ H E FEKLG+ PPKGVLLYGPPGTGK
Sbjct: 161 EVDEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+A+A A + NA F+ + GP+++ + G+ + +R+ F+ A+E AP IIFIDEIDAI
Sbjct: 219 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGT 278
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SEV+G+ E +R + +LL +DG S ++ VI ATNR D +DPAL R GR DR+IE
Sbjct: 279 KRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIE 338
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P + R ILQIH+R M + PD +++ + +DF
Sbjct: 339 FPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDF 376
>gb|AAF22525.1|AF123394_1 (AF123394) 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana] >gi|7596759|gb|AAF64530.1| (AC009606) 26S
proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana]
Length = 424
Score = 222 bits (561), Expect = 9e-57
Identities = 118/278 (42%), Positives = 174/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P ++DIGGLE QEL EA+ P+ + E F+ G+ PPKG+LLYGPPGTGKTL+A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ AP +IFIDEIDAI +R
Sbjct: 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS 283
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 284 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M+A+RR
Sbjct: 344 EEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-------- 395
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
A+E+ +DF E + ++ + K ++ YY
Sbjct: 396 ---DATEVNH------EDFNEGIIQV-QAKKKASLNYY 423
Score = 206 bits (519), Expect = 7e-52
Identities = 107/218 (49%), Positives = 149/218 (68%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV+++ T Y DIGGL+ I+++ E I LP+ H E FEKLG+ PPKGVLLYGPPGTGK
Sbjct: 161 EVDEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+A+A A + NA F+ + GP+++ + G+ + +R+ F+ A+E AP IIFIDEIDAI
Sbjct: 219 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGT 278
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SEV+G+ E +R + +LL +DG S ++ VI ATNR D +DPAL R GR DR+IE
Sbjct: 279 KRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIE 338
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P + R ILQIH+R M + PD +++ + +DF
Sbjct: 339 FPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDF 376
>sp|P96942|FTSH_MYCTU CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7478074|pir||C70956 probable
ftsH protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2113966|emb|CAB08956.1| (Z95557) ftsH [Mycobacterium
tuberculosis]
Length = 760
Score = 222 bits (560), Expect = 1e-56
Identities = 116/255 (45%), Positives = 165/255 (64%), Gaps = 7/255 (2%)
Query: 501 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPG 560
S +++ ++P + D+ G+++ +EL E ++ L+ P ++A G PKG+LLYGPPG
Sbjct: 148 SRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVLLYGPPG 206
Query: 561 TGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDA 620
TGKTLLA+AVA E+ F + G + + +VG +R++F +A+Q +P +IF+DEIDA
Sbjct: 207 TGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 266
Query: 621 IAPRRGTDVNRVTD---RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDR 677
+ +RG + D + +NQLL EMDG + AGV++IAATNRPDILDPALLRPGRFDR
Sbjct: 267 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDR 326
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
I V PD R + +VH++G P+A D DL LA+RT G TGAD+A V EAA++ R
Sbjct: 327 QIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTAR- 385
Query: 738 ALEKGIIKPGMKASE 752
E G + G E
Sbjct: 386 --ENGTVITGPALEE 398
Score = 191 bits (480), Expect = 3e-47
Identities = 96/222 (43%), Positives = 144/222 (64%), Gaps = 5/222 (2%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F + K++ K M T+ D+ G+ + +E++ E+ + L++P ++ LG + PKGVL
Sbjct: 143 FGFGKSRAKQLSKDMPK-TTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVL 200
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
LYGPPGTGKTLLA+AVA EA F I+G + + + G R+R++F++A++N+P IIF
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260
Query: 281 IDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
+DEIDA+ +R G + ++ + QLL MDG R VI+I ATNRPD +DPAL R
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLR 320
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLK 379
PGRFDR+I V PD GR+ +L++H++G P+ D D + K
Sbjct: 321 PGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAK 362
>sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
>gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato >gi|732815|emb|CAA52445.1| (X74426)
Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 222 bits (559), Expect = 1e-56
Identities = 117/278 (42%), Positives = 172/278 (61%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGLE QEL EA+ P+ + E F+ G+ PPKG+LLYGPPGTGKTL+A+
Sbjct: 163 EKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMAR 222
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ +P +IFIDEIDAI +R
Sbjct: 223 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS 282
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 283 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 342
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M+A+R
Sbjct: 343 EEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR--------- 393
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
R +VT +DF E + ++ + K ++ YY
Sbjct: 394 --------RDATEVTHEDFNEGIIQV-QAKKKASLNYY 422
Score = 204 bits (514), Expect = 3e-51
Identities = 105/218 (48%), Positives = 149/218 (68%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV+++ T Y DIGGL+ I+++ E I LP+ H E F+KLG+ PPKGVLLYGPPGTGK
Sbjct: 160 EVDEKPTED--YHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGK 217
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+A+A A + NA F+ + GP+++ + G+ + +R+ F+ A+E +P IIFIDEIDAI
Sbjct: 218 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGT 277
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SEV+G+ E +R + +LL +DG S ++ VI ATNR D +DPAL R GR DR+IE
Sbjct: 278 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 337
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P + R ILQIH+R M + PD +++ + +DF
Sbjct: 338 FPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDF 375
>sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 10)
(TBP-10) >gi|2648045|emb|CAA71486.1| (Y10460) TBP10
protein [Xenopus laevis]
Length = 404
Score = 222 bits (559), Expect = 1e-56
Identities = 118/278 (42%), Positives = 174/278 (62%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 144 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 203
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 204 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGNKRFDS 263
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 264 EKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 323
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ + GA AVC EA +IA+RR
Sbjct: 324 EEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRG------- 376
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 377 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 403
Score = 200 bits (504), Expect = 4e-50
Identities = 104/218 (47%), Positives = 147/218 (66%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 141 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 198
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 199 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFIDELDAIGN 258
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 259 KRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIE 318
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+P+ + R I+QIH+R M + PD +++ + +DF
Sbjct: 319 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDF 356
>gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional activator [human,
Peptide, 439 aa]
Length = 439
Score = 221 bits (558), Expect = 2e-56
Identities = 119/278 (42%), Positives = 173/278 (61%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 179 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 238
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 239 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 298
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 299 EKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 358
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M ++ DV+ +ELAR T+ GA AVC EA MIA+ R
Sbjct: 359 EEARARIMQIHSRKMNVSPDVNYEELARCTDDPNGAQCKAVCVEAGMIALARG------- 411
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
++T +D+ E + ++ + K ++YY
Sbjct: 412 ----------ATELTHEDYMEGILEV-QAKKKANLQYY 438
Score = 198 bits (499), Expect = 2e-49
Identities = 103/217 (47%), Positives = 146/217 (66%), Gaps = 5/217 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 176 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 234 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 294 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILED 383
+P+ + R I+QIH+R M + PD +++ + +D
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDD 390
>gb|AAF08388.1|AF145307_1 (AF145307) 26S proteasome regulatory complex subunit p48B
[Drosophila melanogaster] >gi|7304183|gb|AAF59219.1|
(AE003840) Rpt1 gene product [Drosophila melanogaster]
Length = 433
Score = 221 bits (557), Expect = 3e-56
Identities = 146/444 (32%), Positives = 219/444 (48%), Gaps = 59/444 (13%)
Query: 370 PDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLI 429
PD+ DD K+ D K + + + + IE + + + + +K I+ ++ VK
Sbjct: 2 PDYLGDDQRKVKHDEKEDKEIKSLDEGDIELLKTYGQSQYHKSIKSIEEDIQKAVKQ--- 58
Query: 430 DKLLDELADVTHGFVGA------DLAA----LAREAAMAALR------------------ 461
++EL + G DLAA L E + R
Sbjct: 59 ---VNELTGIKESDTGLAPPALWDLAADKQILQNEQPLQVARCTKIINADSDDPKYIINV 115
Query: 462 RLIREGKIDFEAETIPREVLDELKV-TRRDFYEAL----KMVEPSALREVLIEVPNVHWD 516
+ + +D P ++ + ++V R+ Y+ ++P+ + + P+V +
Sbjct: 116 KQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYS 175
Query: 517 DIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQA 576
D+GG ++ ++LRE VE PL +PE F GI PPKG+LL+GPPGTGKTL A+AVA + A
Sbjct: 176 DVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDA 235
Query: 577 NFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNRVT 633
FI V G E++ K+VGE + +RE+F AR +IF DEIDAI R G +
Sbjct: 236 CFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGGDNEV 295
Query: 634 DRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIF 693
R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR DR + PD+ R IF
Sbjct: 296 QRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGRSHIF 355
Query: 694 KVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEI 753
K+H R M + D+ LAR TGA+I +VC EA M A+R
Sbjct: 356 KIHARSMSVERDIRFDLLARLCPNSTGAEIRSVCTEAGMFAIR----------------- 398
Query: 754 RRLAKVTMKDFEEALRKIGPSVSK 777
R T KDF EA++K+ S +K
Sbjct: 399 ARRKVATEKDFLEAVKKVIKSYAK 422
Score = 214 bits (540), Expect = 3e-54
Identities = 106/200 (53%), Positives = 137/200 (68%), Gaps = 3/200 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++E PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A +IF DEIDAI R + G
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACLIFFDEIDAIGGARFDDGAGG 291
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +L+ +DG RG + V+ ATNRPD +DPAL RPGR DR++E G+PD+ GR
Sbjct: 292 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDQDGR 351
Query: 356 KEILQIHTRGMPIEPDFRKD 375
I +IH R M +E D R D
Sbjct: 352 SHIFKIHARSMSVERDIRFD 371
>gb|AAD46145.1| (AF081573) 19S proteasome regulatory complex subunit S6A
[Arabidopsis thaliana]
Length = 424
Score = 221 bits (557), Expect = 3e-56
Identities = 118/278 (42%), Positives = 173/278 (61%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P ++DIGGLE QEL EA+ P+ + E F+ G+ PPKG+LLYGPPGTGKTL+A+
Sbjct: 164 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMAR 223
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
A A ++ A F+ + GP+++ ++G+ K +R+ F+ A++ AP +IFIDEIDAI +R
Sbjct: 224 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDS 283
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 284 EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M + DV +ELAR T+ + GA + AVC EA M+A+RR
Sbjct: 344 EEARARILQIHSRKMNVHPDVHFEELARSTDDFHGAQLKAVCVEAGMLALRR-------- 395
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
A+E+ +DF E + ++ + K ++ YY
Sbjct: 396 ---DATEVNH------EDFNEGIIQV-QAKKKASLNYY 423
Score = 206 bits (519), Expect = 7e-52
Identities = 107/218 (49%), Positives = 149/218 (68%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV+++ T Y DIGGL+ I+++ E I LP+ H E FEKLG+ PPKGVLLYGPPGTGK
Sbjct: 161 EVDEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+A+A A + NA F+ + GP+++ + G+ + +R+ F+ A+E AP IIFIDEIDAI
Sbjct: 219 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGT 278
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SEV+G+ E +R + +LL +DG S ++ VI ATNR D +DPAL R GR DR+IE
Sbjct: 279 KRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIE 338
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P + R ILQIH+R M + PD +++ + +DF
Sbjct: 339 FPHPTEEARARILQIHSRKMNVHPDVHFEELARSTDDF 376
>gb|AAF49987.1| (AE003543) CG7257 gene product [Drosophila melanogaster]
Length = 398
Score = 221 bits (557), Expect = 3e-56
Identities = 120/278 (43%), Positives = 168/278 (60%), Gaps = 20/278 (7%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
NV++ +IGGL +ELRE +E PL P+ F GI+PPKG LLYGPPGTGKTLLA+A+A
Sbjct: 138 NVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIA 197
Query: 572 TESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTD 628
++ ANF+ V I+ K++GES + IRE+F AR P +IF+DEIDAI RR GT
Sbjct: 198 SQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTS 257
Query: 629 VNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 688
+R R + +LL +MDG V +I ATNRPD LDPALLRPGR DR + +P P+E A
Sbjct: 258 ADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVA 317
Query: 689 RFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGM 748
R +I K+H + ++D + + + ++ + GAD+ +C EA + A+R E
Sbjct: 318 RMDILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREF------- 370
Query: 749 KASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKI 786
V +DF +A+RKI + E+ Y+ I
Sbjct: 371 ----------VIQEDFMKAVRKIADNKKLESRLDYKPI 398
Score = 190 bits (478), Expect = 5e-47
Identities = 99/209 (47%), Positives = 142/209 (67%), Gaps = 3/209 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V Y +IGGL I ++RE+IELPL +P++F ++GI PPKG LLYGPPGTGKTLLA+A+A+
Sbjct: 139 VNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIAS 198
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTGE 297
+ +A F+ + I+ KY GES +RE+F A ++ P IIF+DEIDAI +R SE T
Sbjct: 199 QMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSA 258
Query: 298 VE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+R + +LL MDG + G+V +I ATNRPD +DPAL RPGR DR++E+ +P+ R
Sbjct: 259 DREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVAR 318
Query: 356 KEILQIHTRGMPIEPDFRKDDVLKILEDF 384
+IL+IH + + + V+K+ + F
Sbjct: 319 MDILKIHAEPLNKRGEIDYEAVVKLSDLF 347
>gb|AAB42248.1| (U88170) Contains similarity to Pfam domain: PF00004 (AAA),
Score=322.1, E-value=2.1e-93, N=1 [Caenorhabditis
elegans]
Length = 493
Score = 220 bits (556), Expect = 3e-56
Identities = 110/242 (45%), Positives = 159/242 (65%), Gaps = 3/242 (1%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++ +A+ + + P +DDIGG E QEL+E+VE PL +PE ++ GIT PKG++LYG
Sbjct: 220 IDSNAMGHKVEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYG 279
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA + A FI G +++ K GE + +R+IF+ A++ AP+++FIDE
Sbjct: 280 EPGTGKTLLAKAVANSTSATFIRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDE 339
Query: 618 IDAIAPRRGTDVNR---VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDA+ +R +R R + +LL ++DG + V +I ATNR D LDPAL+RPGR
Sbjct: 340 IDAVGTKRFDTSSRGEQEVQRTLLELLNQLDGFESRGDVKIIMATNRIDSLDPALIRPGR 399
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I +P PDEK R +IF +HT GM + V + + + + +GA+I AVC EA M+A
Sbjct: 400 IDRKIELPKPDEKTRQKIFTIHTSGMTIQKAVTYENVLGKEKSISGAEIKAVCTEAGMLA 459
Query: 735 MR 736
+R
Sbjct: 460 LR 461
Score = 208 bits (524), Expect = 2e-52
Identities = 116/257 (45%), Positives = 167/257 (64%), Gaps = 7/257 (2%)
Query: 125 VVRGDYIKVGVLGQELTFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDI 184
+V D +++ L + T PS +V + + D S +VEK T T++DI
Sbjct: 185 IVDKDLLRLNALVMVKAGGMFKTVPSAIVGVLD--DKIDSNAMGHKVEK--TPKETFDDI 240
Query: 185 GGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYF 244
GG + I++++E +ELPL HPE +E++GI PKGV+LYG PGTGKTLLAKAVAN +A F
Sbjct: 241 GGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYGEPGTGKTLLAKAVANSTSATF 300
Query: 245 IAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT--GEVE-KR 301
I G +++ K GE +R++F+ A+E AP+I+FIDEIDA+ KR + + GE E +R
Sbjct: 301 IRATGSDLVQKQSGEGARLVRQIFQMAKEQAPSIVFIDEIDAVGTKRFDTSSRGEQEVQR 360
Query: 302 VVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQI 361
+ +LL +DG +SRG V +I ATNR D++DPAL RPGR DR+IE+ PD + R++I I
Sbjct: 361 TLLELLNQLDGFESRGDVKIIMATNRIDSLDPALIRPGRIDRKIELPKPDEKTRQKIFTI 420
Query: 362 HTRGMPIEPDFRKDDVL 378
HT GM I+ ++VL
Sbjct: 421 HTSGMTIQKAVTYENVL 437
>emb|CAA73318.1| (Y12780) ATPase [Arabidopsis thaliana]
Length = 634
Score = 220 bits (556), Expect = 3e-56
Identities = 114/238 (47%), Positives = 158/238 (65%), Gaps = 6/238 (2%)
Query: 509 EVPN--VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
EVP V + D+ G + K EL+E V++ LK P+ + A G PKG LL GPPGTGKTLL
Sbjct: 185 EVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTLL 243
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+AVA E+ F + E + +VG +R++F KA+ AP ++FID +DA+ +RG
Sbjct: 244 ARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDRVDAVGRQRG 303
Query: 627 TDV---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ N ++ INQLLTEMDG N+GV+V+AATNRPD+LD ALLRPG+FDR + V
Sbjct: 304 AGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDR 363
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
PD R +I +VH+RG L DVD ++ARR+ G+TGAD+ + EAA++A RR L++
Sbjct: 364 PDVAGRVKILQVHSRGKALGKDVDFDKVARRSPGFTGADLQNLMNEAAILAARRELKE 421
Score = 176 bits (443), Expect = 6e-43
Identities = 105/283 (37%), Positives = 159/283 (56%), Gaps = 17/283 (6%)
Query: 160 DFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGV 219
DF S+ +EV + TGV++ D+ G +++E+++ LK+P+ + LG + PKG
Sbjct: 175 DFGRSKSKFQEVPE---TGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGC 230
Query: 220 LLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAII 279
LL GPPGTGKTLLA+AVA EA F + E + + G R+R++F++A+ AP I+
Sbjct: 231 LLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIV 290
Query: 280 FIDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
FID +DA+ +R G + ++ + QLL MDG VIV+ ATNRPD +D AL
Sbjct: 291 FIDRVDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALL 350
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDK 396
RPG+FDR++ V PD GR +ILQ+H+RG + D D V + F + +
Sbjct: 351 RPGKFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRSPGFTGADLQNLMNEA 410
Query: 397 AI----EEVNKSKEEEIPQVLKKIDA------ELYDEVKTRLI 429
AI E+ + ++EI L++I A + E K RL+
Sbjct: 411 AILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLV 453
>sp|O64982|PRS7_PRUPE 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|3172331|gb|AAC18523.1| (AF041258) 26S proteasome
subunit 7 [Prunus persica]
Length = 425
Score = 220 bits (556), Expect = 3e-56
Identities = 117/277 (42%), Positives = 165/277 (59%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++PS + E P+V ++D+GG ++ +++RE VE P+ +PE F GI PPKG+L YG
Sbjct: 149 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 208
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTLLA+AVA + A FI V G E++ K+VGE + +RE+F+ AR ++F DE
Sbjct: 209 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 268
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
+DAI R G + R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 269 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 328
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR + PD ++R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 329 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 388
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R VT KDF +A+ K+
Sbjct: 389 IR-----------------ARRKTVTEKDFLDAVNKV 408
Score = 214 bits (539), Expect = 3e-54
Identities = 105/198 (53%), Positives = 140/198 (70%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++ELP+ HPE F KLGI+PPKGVL YGPPGTGKTLLA+AVAN
Sbjct: 164 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 223
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A I+F DE+DAI R + V G
Sbjct: 224 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 283
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +++ +DG +RG + V+ ATNRPD +DPAL RPGR DR++E G+PD + R
Sbjct: 284 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESR 343
Query: 356 KEILQIHTRGMPIEPDFR 373
+I +IHTR M E D R
Sbjct: 344 TQIFKIHTRTMNCERDIR 361
>gb|AAF02852.1|AC009324_1 (AC009324) 26S proteasome ATPase subunit [Arabidopsis thaliana]
>gi|10645345|gb|AAG21465.1|AC024260_8 (AC024260) 26S
proteasome ATPase subunit; 3861-6264 [Arabidopsis
thaliana]
Length = 426
Score = 220 bits (556), Expect = 3e-56
Identities = 117/277 (42%), Positives = 165/277 (59%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++PS + E P+V ++D+GG ++ +++RE VE P+ +PE F GI PPKG+L YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTLLA+AVA + A FI V G E++ K+VGE + +RE+F+ AR ++F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
+DAI R G + R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR + PD ++R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R VT KDF +A+ K+
Sbjct: 390 IR-----------------ARRKTVTEKDFLDAVNKV 409
Score = 214 bits (539), Expect = 3e-54
Identities = 105/198 (53%), Positives = 140/198 (70%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++ELP+ HPE F KLGI+PPKGVL YGPPGTGKTLLA+AVAN
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A I+F DE+DAI R + V G
Sbjct: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +++ +DG +RG + V+ ATNRPD +DPAL RPGR DR++E G+PD + R
Sbjct: 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESR 344
Query: 356 KEILQIHTRGMPIEPDFR 373
+I +IHTR M E D R
Sbjct: 345 TQIFKIHTRTMNCERDIR 362
>pir||D82934 ATP-dependent zinc metallopeptidase, cell division protein UU105
[imported] - Ureaplasma urealyticum
>gi|6899060|gb|AAF30511.1|AE002110_9 (AE002110)
ATP-dependent zinc metallopeptidase - cell division
protein [Ureaplasma urealyticum]
Length = 721
Score = 220 bits (556), Expect = 3e-56
Identities = 120/283 (42%), Positives = 177/283 (62%), Gaps = 20/283 (7%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
V + D+ G+ +VK+EL E V++ LK P+ + A G PKG++LYGPPGTGKTL+AKAVA
Sbjct: 236 VRFSDVAGIAEVKEELIEIVDF-LKEPKKYVAAGARIPKGVMLYGPPGTGKTLIAKAVAG 294
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRV 632
E+ F G +VG + +RE+F KAR++AP +IFIDEID++A +RG + V
Sbjct: 295 EANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRGNSLTAV 354
Query: 633 TDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEI 692
D+ INQLL+E+DG ++GV+V+AATNR D LD A+LRPGRFDR I V PD R +I
Sbjct: 355 QDQTINQLLSELDGFDTSSGVIVMAATNRLDTLDDAILRPGRFDRQISVNLPDILEREQI 414
Query: 693 FKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASE 752
++H+R L+ V L+++ARRT G++GA + V EAA++++R KA+
Sbjct: 415 LRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVLNEAALLSVRD-----------KATS 463
Query: 753 IRRLAKVTMKDFEEALRKI--GPSVSKETMEYYRKIQEQFKQA 793
I M +EA+ ++ GPS + + + Q + +A
Sbjct: 464 IH------MNHLDEAIDRVIAGPSRPNKVISEREREQVSYHEA 500
Score = 183 bits (461), Expect = 5e-45
Identities = 100/249 (40%), Positives = 147/249 (58%), Gaps = 9/249 (3%)
Query: 173 KRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLL 232
K +GV + D+ G+ +V E++ E+++ LK P+ + G PKGV+LYGPPGTGKTL+
Sbjct: 230 KLTKSGVRFSDVAGIAEVKEELIEIVDF-LKEPKKYVAAGARIPKGVMLYGPPGTGKTLI 288
Query: 233 AKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRS 292
AKAVA EAN F G + G R+RE+F++A ++APAIIFIDEID++A KR
Sbjct: 289 AKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG 348
Query: 293 EVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
V+ + + QLL+ +DG + VIV+ ATNR D +D A+ RPGRFDR+I V +PD
Sbjct: 349 NSLTAVQDQTINQLLSELDGFDTSSGVIVMAATNRLDTLDDAILRPGRFDRQISVNLPDI 408
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLK--------ILEDFKREGKFTKIIDKAIEEVNKS 404
R++IL+IH+R + +D+ + LE+ E + DKA
Sbjct: 409 LEREQILRIHSRNKNLSAKVSLEDIARRTAGFSGAQLENVLNEAALLSVRDKATSIHMNH 468
Query: 405 KEEEIPQVL 413
+E I +V+
Sbjct: 469 LDEAIDRVI 477
>pir||E82299 cell division protein FtsH VC0637 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655072|gb|AAF93803.1|
(AE004149) cell division protein FtsH [Vibrio cholerae]
Length = 651
Score = 220 bits (556), Expect = 3e-56
Identities = 118/277 (42%), Positives = 176/277 (62%), Gaps = 21/277 (7%)
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
+ D+ G ++ K++++E V++ L+ P F+ G P G+L+ GPPGTGKTLLAKA+A E+
Sbjct: 155 FSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAGEA 213
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTD 634
+ F + G + + +VG +R++F +A++A+P +IFIDEIDA+ +RG V D
Sbjct: 214 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGHD 273
Query: 635 ---RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 691
+ +NQ+L EMDG + N G++VIAATNRPD+LDPALLRPGRFDR ++V PD + R +
Sbjct: 274 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 333
Query: 692 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
I KVH R +PLA+DV+ +AR T G++GAD+A + EAA+ A R G K +
Sbjct: 334 ILKVHMRKVPLANDVEPSLIARGTPGFSGADLANLVNEAALFAAR----------GNKRN 383
Query: 752 EIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQE 788
V+M +FE A KI + +M +I+E
Sbjct: 384 -------VSMVEFELAKDKIMMGAERRSMVMSEEIKE 413
Score = 183 bits (459), Expect = 8e-45
Identities = 88/195 (45%), Positives = 133/195 (68%), Gaps = 4/195 (2%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
T+ D+ G + E ++E+++ L+ P F+KLG + P GVL+ GPPGTGKTLLAKA+A E
Sbjct: 154 TFSDVAGCDEAKEDVKELVDY-LRDPSRFQKLGGKIPTGVLMVGPPGTGKTLLAKAIAGE 212
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG--- 296
A F I+G + + + G R+R++F++A++ +P IIFIDEIDA+ +R G
Sbjct: 213 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKASPCIIFIDEIDAVGRQRGAGVGGGH 272
Query: 297 EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
+ ++ + Q+L MDG + +IVI ATNRPD +DPAL RPGRFDR++ VG+PD +GR+
Sbjct: 273 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 332
Query: 357 EILQIHTRGMPIEPD 371
+IL++H R +P+ D
Sbjct: 333 QILKVHMRKVPLAND 347
>sp|Q41365|PRS7_SPIOL 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
>gi|7435732|pir||T09104 26S proteasome ATPase chain -
spinach >gi|1395191|dbj|BAA13021.1| (D86121) 26S
proteasome ATPase subunit [Spinacia oleracea]
Length = 426
Score = 220 bits (555), Expect = 4e-56
Identities = 117/277 (42%), Positives = 164/277 (58%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++PS + E P+V ++D+GG ++ +++RE VE P+ +PE F GI PPKG+L YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTLLA+AVA + A FI V G E++ K+VGE + +RE+F+ AR ++F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
+DAI R G + R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR + PD + R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R VT KDF +A+ K+
Sbjct: 390 IR-----------------ARRKTVTEKDFLDAVNKV 409
Score = 216 bits (545), Expect = 7e-55
Identities = 106/198 (53%), Positives = 141/198 (70%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++ELP+ HPE F KLGI+PPKGVL YGPPGTGKTLLA+AVAN
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A I+F DE+DAI R + V G
Sbjct: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +++ +DG +RG + V+ ATNRPD +DPAL RPGR DR++E G+PD +GR
Sbjct: 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGR 344
Query: 356 KEILQIHTRGMPIEPDFR 373
+I +IHTR M E D R
Sbjct: 345 TQIFKIHTRTMNCERDIR 362
>pir||T48743 probable 26S ATP/ubiquitin-dependent proteinase chain S4 [imported]
- Neurospora crassa >gi|7635793|emb|CAB88559.1|
(AL353819) probable 26S ATP/ubiquitin-dependent
proteinase chain S4 [Neurospora crassa]
Length = 471
Score = 220 bits (555), Expect = 4e-56
Identities = 115/276 (41%), Positives = 170/276 (60%), Gaps = 20/276 (7%)
Query: 499 EPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGP 558
+P+ L + P + DIGGLE QE+RE+VE PL +PE ++ GI PPKG++LYG
Sbjct: 199 DPAVSVMKLDKAPTESYADIGGLEQQIQEVRESVELPLLHPELYEEMGIKPPKGVILYGA 258
Query: 559 PGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEI 618
PGTGKTLLAKAVA ++ A F+ + G E++ K++G+ + +R++F+ A + AP+++FIDEI
Sbjct: 259 PGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQLFQVAAENAPSIVFIDEI 318
Query: 619 DAIAPRRGTDVN---RVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRF 675
DAI +R + R R + +LL ++DG + V VI ATN+ + LDPAL+RPGR
Sbjct: 319 DAIGTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIESLDPALIRPGRI 378
Query: 676 DRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAM 735
DR IL PD+ + +IF +HT M L +DVDL+E + + +GADI A+C EA ++A+
Sbjct: 379 DRKILFENPDQNTKRKIFTLHTSKMSLNEDVDLEEFIAQKDDLSGADIKAICSEAGLMAL 438
Query: 736 RRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
R R +V M DF A ++
Sbjct: 439 R-----------------ERRMRVQMADFRAARERV 457
Score = 206 bits (519), Expect = 7e-52
Identities = 111/232 (47%), Positives = 160/232 (68%), Gaps = 8/232 (3%)
Query: 155 ITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIE 214
+T+ TD +S V +++K T +Y DIGGL+ I+++RE +ELPL HPEL+E++GI+
Sbjct: 194 LTDDTDPAVS---VMKLDKAPTE--SYADIGGLEQQIQEVRESVELPLLHPELYEEMGIK 248
Query: 215 PPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
PPKGV+LYG PGTGKTLLAKAVAN+ +A F+ I G E++ KY G+ +R++F+ A EN
Sbjct: 249 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQLFQVAAEN 308
Query: 275 APAIIFIDEIDAIAPKRSEVT--GEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAI 331
AP+I+FIDEIDAI KR + T GE E +R + +LL +DG RG V VI ATN+ +++
Sbjct: 309 APSIVFIDEIDAIGTKRYDSTSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIESL 368
Query: 332 DPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILED 383
DPAL RPGR DR+I PD+ +++I +HT M + D ++ + +D
Sbjct: 369 DPALIRPGRIDRKILFENPDQNTKRKIFTLHTSKMSLNEDVDLEEFIAQKDD 420
>dbj|BAB17624.1| (AB033535) 26S proteasome regulatory particle triple-A ATPase
subunit1 [Oryza sativa]
Length = 426
Score = 220 bits (555), Expect = 4e-56
Identities = 117/277 (42%), Positives = 164/277 (58%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++PS + E P+V ++D+GG ++ +++RE VE P+ +PE F GI PPKG+L YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTLLA+AVA + A FI V G E++ K+VGE + +RE+F+ AR ++F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
+DAI R G + R + +++ ++DG + V+ ATNRPD LDPALLRPGR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR + PD + R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R VT KDF +A+ K+
Sbjct: 390 IR-----------------ARRKTVTEKDFLDAVNKV 409
Score = 216 bits (545), Expect = 7e-55
Identities = 106/198 (53%), Positives = 141/198 (70%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++ELP+ HPE F KLGI+PPKGVL YGPPGTGKTLLA+AVAN
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A I+F DE+DAI R + V G
Sbjct: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +++ +DG +RG + V+ ATNRPD +DPAL RPGR DR++E G+PD +GR
Sbjct: 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGR 344
Query: 356 KEILQIHTRGMPIEPDFR 373
+I +IHTR M E D R
Sbjct: 345 TQIFKIHTRTMNCERDIR 362
>gb|AAC32257.1| (AF037269) cell division protein [Mycobacterium smegmatis]
Length = 769
Score = 220 bits (554), Expect = 6e-56
Identities = 115/255 (45%), Positives = 164/255 (64%), Gaps = 7/255 (2%)
Query: 501 SALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPG 560
S +++ ++P + D+ G+++ +EL E ++ L+ P ++A G PKG+LLYGPPG
Sbjct: 148 SRAKQLSKDMPKTTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVLLYGPPG 206
Query: 561 TGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDA 620
TGKTLLA+AVA E+ F + G + + +VG +R++F +A+Q +P +IF+DEIDA
Sbjct: 207 TGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIFVDEIDA 266
Query: 621 IAPRRGTDVNRVTD---RIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDR 677
+ +RG + D + +NQLL EMDG + GV++IAATNRPDILDPALLRPGRFDR
Sbjct: 267 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPALLRPGRFDR 326
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
I V PD R + KVH++G P+A D DL LA+RT G +GAD+A V EAA++ R
Sbjct: 327 QIPVSNPDLAGRRAVLKVHSQGKPIAPDADLDGLAKRTVGMSGADLANVINEAALLTAR- 385
Query: 738 ALEKGIIKPGMKASE 752
E G + G E
Sbjct: 386 --ENGTVITGPALEE 398
Score = 194 bits (488), Expect = 3e-48
Identities = 98/222 (44%), Positives = 145/222 (65%), Gaps = 5/222 (2%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F + K++ K M T+ D+ G+ + +E++ E+ + L++P ++ LG + PKGVL
Sbjct: 143 FGFGKSRAKQLSKDMPK-TTFADVAGVDEAVEELYEIKDF-LQNPSRYQALGAKIPKGVL 200
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
LYGPPGTGKTLLA+AVA EA F I+G + + + G R+R++F++A++N+P IIF
Sbjct: 201 LYGPPGTGKTLLARAVAGEAGVPFFTISGSDFVEMFVGVGASRVRDLFEQAKQNSPCIIF 260
Query: 281 IDEIDAIAPKRSEVTG---EVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
+DEIDA+ +R G + ++ + QLL MDG R VI+I ATNRPD +DPAL R
Sbjct: 261 VDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRQGVILIAATNRPDILDPALLR 320
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLK 379
PGRFDR+I V PD GR+ +L++H++G PI PD D + K
Sbjct: 321 PGRFDRQIPVSNPDLAGRRAVLKVHSQGKPIAPDADLDGLAK 362
>sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2342675|gb|AAB70397.1| (AC000106)
Similar to probable Mg-dependent ATPase (pir|S56671).
ESTs gb|T46782,gb|AA04798 come from this gene.
[Arabidopsis thaliana]
Length = 419
Score = 219 bits (553), Expect = 8e-56
Identities = 118/278 (42%), Positives = 173/278 (61%), Gaps = 21/278 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P ++DIGGLE QEL EA+ P+ + E F+ GI PPKG+LLYGPPGTGKTL+A+
Sbjct: 159 EKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMAR 218
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
A A ++ A F+ + GP+++ ++G+ K +R+ F A++ +P +IFIDEIDAI +R
Sbjct: 219 ACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDS 278
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG + + VIAATNR DILDPAL+R GR DR I P P
Sbjct: 279 EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 338
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
E+AR I ++H+R M + DV+ +ELAR T+ + GA + AVC EA M+A+RR
Sbjct: 339 EEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRR-------- 390
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
A+E+ +DF E + ++ + K ++ YY
Sbjct: 391 ---DATEVNH------EDFNEGIIQV-QAKKKASLNYY 418
Score = 201 bits (506), Expect = 2e-50
Identities = 106/218 (48%), Positives = 147/218 (66%), Gaps = 5/218 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV+++ T Y DIGGL+ I+++ E I LP+ H E FEKLGI PPKGVLLYGPPGTGK
Sbjct: 156 EVDEKPTED--YNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGK 213
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL+A+A A + NA F+ + GP+++ + G+ + +R+ F A+E +P IIFIDEIDAI
Sbjct: 214 TLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGT 273
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SEV+G+ E +R + +LL +DG S ++ VI ATNR D +DPAL R GR DR+IE
Sbjct: 274 KRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE 333
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
P + R ILQIH+R M + D +++ + +DF
Sbjct: 334 FPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDF 371
>pir||T38636 tat binding homolog - fission yeast (Schizosaccharomyces pombe)
>gi|2388970|emb|CAB11703.1| (Z98979) tat-binding homolog
7, AAA ATPase family protein [Schizosaccharomyces pombe]
Length = 1190
Score = 219 bits (551), Expect = 1e-55
Identities = 146/450 (32%), Positives = 234/450 (51%), Gaps = 45/450 (10%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
+ +++E +GGL + I +++EM+ LPL +PE+F++ ++PP+GVL +GPPGTGKTL+A+A+
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARAL 320
Query: 237 ANEANAY-----FIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR 291
A ++ F G + +SK+ GE+E +LR +F+EA+ P+IIF DEID +AP R
Sbjct: 321 AAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVR 380
Query: 292 SEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD 351
S ++ +V+ LLALMDG++SRG+VI+IGATNRPDA+DPALRRPGRFDRE +PD
Sbjct: 381 SSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPD 440
Query: 352 RQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQ 411
R RK+I++IHTR +P + + E K G ++ E
Sbjct: 441 RDARKKIIEIHTRNW--DPPVPEWLCSMLAEKSKGYGG---------ADLRALCTEAALN 489
Query: 412 VLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGK-ID 470
+K+ +LY K ID T D + ++ R I K +
Sbjct: 490 SIKRTYPQLYRSTKRLQID-------PKTIKVKVKDFVMSMKRMIPSSERSSISPSKPLS 542
Query: 471 FEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELRE 530
E + + E +++ T + + P L EV+ + P + D + + R
Sbjct: 543 PELKPLLNEAFQDIEKTLQKLMPVASKLNP--LEEVMYDDPKEN--------DFEYQQR- 591
Query: 531 AVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFI-AVRGPEILSK 589
E F+ I P+ L+ G G G+T L A+ + + + + +L
Sbjct: 592 --------LETFETLRIYKPR-FLICGRKGLGQTALGPAILQQYEGVHVQSFDMSTLLQD 642
Query: 590 WVGESEKNIREIFRKARQAAPTVIFIDEID 619
E +I +F + R+ P++I+I +ID
Sbjct: 643 STQSIETSIIHLFLEVRRHTPSIIYIPDID 672
Score = 215 bits (543), Expect = 1e-54
Identities = 107/286 (37%), Positives = 178/286 (61%), Gaps = 7/286 (2%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
++ ++ +GGL++ +L+E V PL YPE F+ + + PP+G+L +GPPGTGKTL+A+A+A
Sbjct: 262 SLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
Query: 572 T-----ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
+ +F +G + LSKWVGE+E+ +R +F +A+ P++IF DEID +AP R
Sbjct: 322 AACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRS 381
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ I++ LL MDG++ V++I ATNRPD +DPAL RPGRFDR P PD
Sbjct: 382 SKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDR 441
Query: 687 KARFEIFKVHTRGM-PLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
AR +I ++HTR P + LA +++GY GAD+ A+C EAA+ +++R + + +
Sbjct: 442 DARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTYPQ-LYR 500
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+ + KV +KDF +++++ PS + ++ + + + K
Sbjct: 501 STKRLQIDPKTIKVKVKDFVMSMKRMIPSSERSSISPSKPLSPELK 546
>gi|4506209 proteasome (prosome, macropain) 26S subunit, ATPase, 2; Proteasome
26S subunit, ATPase, 2 [Homo sapiens]
>gi|547930|sp|P35998|PRS7_HUMAN 26S PROTEASE REGULATORY
SUBUNIT 7 (MSS1 PROTEIN) >gi|107102|pir||S24353
proteasome 26S subunit MSS1 - human
>gi|219931|dbj|BAA01868.1| (D11094) MSS1 protein [Homo
sapiens] >gi|228886|prf||1813280A tat-mediated
transactivation modulator [Homo sapiens]
Length = 433
Score = 218 bits (549), Expect = 2e-55
Identities = 147/403 (36%), Positives = 209/403 (51%), Gaps = 54/403 (13%)
Query: 403 KSKEEEIPQVLKKIDAEL--YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAAL 460
K E++I Q+LKKI+ EL E T L L +LA AD L E +
Sbjct: 46 KQVEDDIQQLLKKIN-ELTGIKESDTGLAPPALWDLA--------ADKQTLQSEQPLQVA 96
Query: 461 R------------------RLIREGKIDFEAETIPREVLDELKV-TRRDFYEAL----KM 497
R + + +D + P ++ + ++V R+ Y+
Sbjct: 97 RCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPK 156
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++P+ + E P+V + D+GG ++ ++LRE VE PL +PE F GI PPKG+LL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTL A+AVA + A FI V G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDAI R G + R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
+R R++A T KDF EA+ K+ S +K
Sbjct: 397 IRAR---------------RKIA--TEKDFLEAVNKVIKSYAK 422
Score = 210 bits (529), Expect = 5e-53
Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++E PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A +IF DEIDAI R + G
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGG 291
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +L+ +DG RG + V+ ATNRPD +DPAL RPGR DR+IE +PD +GR
Sbjct: 292 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGR 351
Query: 356 KEILQIHTRGMPIEPDFR 373
I +IH R M +E D R
Sbjct: 352 THIFKIHARSMSVERDIR 369
>sp|Q63347|PRS7_RAT 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1395179|dbj|BAA09339.1| (D50694) proteasomal ATPase
(MSS1) [Rattus norvegicus]
Length = 433
Score = 218 bits (549), Expect = 2e-55
Identities = 147/403 (36%), Positives = 209/403 (51%), Gaps = 54/403 (13%)
Query: 403 KSKEEEIPQVLKKIDAEL--YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAAL 460
K E++I Q+LKKI+ EL E T L L +LA AD L E +
Sbjct: 46 KQVEDDIQQLLKKIN-ELTGIKESDTGLAPPALWDLA--------ADKQTLQSEQPLQVA 96
Query: 461 R------------------RLIREGKIDFEAETIPREVLDELKV-TRRDFYEAL----KM 497
R + + +D + P ++ + ++V R+ Y+
Sbjct: 97 RCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPK 156
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++P+ + E P+V + D+GG ++ ++LRE VE PL +PE F GI PPKG+LL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTL A+AVA + A FI V G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDAI R G + R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
+R R++A T KDF EA+ K+ S +K
Sbjct: 397 IRAR---------------RKIA--TEKDFLEAVNKVIKSYAK 422
Score = 210 bits (529), Expect = 5e-53
Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++E PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A +IF DEIDAI R + G
Sbjct: 232 RTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGG 291
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +L+ +DG RG + V+ ATNRPD +DPAL RPGR DR+IE +PD +GR
Sbjct: 292 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGR 351
Query: 356 KEILQIHTRGMPIEPDFR 373
I +IH R M +E D R
Sbjct: 352 THIFKIHARSMSVERDIR 369
>gb|AAF91243.1|AF227499_1 (AF227499) proteasome regulatory ATPase subunit 1 [Trypanosoma
brucei]
Length = 437
Score = 218 bits (549), Expect = 2e-55
Identities = 105/203 (51%), Positives = 145/203 (70%), Gaps = 1/203 (0%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ I++IRE++ELPL +PE + +LGI+PPKGVLLYGPPGTGKTLLAKAVAN
Sbjct: 178 VTYNDVGGAKEQIDRIREVVELPLTNPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVAN 237
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEV 298
+A FI + G E++ +Y GE +RE+F+ A AIIF DE+DA+ R G+
Sbjct: 238 RTDATFIRVIGSELVQRYIGEGARMIREIFQLARTKKAAIIFFDEVDAVGGARGGGDGDD 297
Query: 299 E-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKE 357
E +R + +++ MDG SRG + VI ATNRPD +DPAL RPGR DR++EVG+PD +GR +
Sbjct: 298 EIQRTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRKLEVGLPDLEGRTK 357
Query: 358 ILQIHTRGMPIEPDFRKDDVLKI 380
IL+IH + + E R + + ++
Sbjct: 358 ILRIHAKSLSCEKAIRFELIARL 380
Score = 213 bits (538), Expect = 4e-54
Identities = 136/402 (33%), Positives = 204/402 (49%), Gaps = 57/402 (14%)
Query: 396 KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
K +EE K+K E + ++ D EL LA + +D + E
Sbjct: 50 KELEEFVKTKAEAVNKLAGTRDNEL--------------GLAPPVQWDLNSDQEVMRSEN 95
Query: 456 AMAALR--RLIREGKIDFEAETIPREVLDEL-----KVTRRDFYEALKM----------- 497
++ R R+I +G+ D + R+ + +V R+D E++++
Sbjct: 96 SLHVARCTRIINKGQDDAKYVVAIRDTAKYVVKLGNRVARQDIEESMRVGVLVGYSSIHI 155
Query: 498 -------VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP 550
V+PS + E P+V ++D+GG ++ +RE VE PL PE + GI PP
Sbjct: 156 EIPLPPRVDPSVSMMQVEEKPDVTYNDVGGAKEQIDRIREVVELPLTNPEKYTQLGIDPP 215
Query: 551 KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAP 610
KG+LLYGPPGTGKTLLAKAVA + A FI V G E++ +++GE + IREIF+ AR
Sbjct: 216 KGVLLYGPPGTGKTLLAKAVANRTDATFIRVIGSELVQRYIGEGARMIREIFQLARTKKA 275
Query: 611 TVIFIDEIDAI-APRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPAL 669
+IF DE+DA+ R G D + R + +++ +MDG + VI ATNRPD LDPAL
Sbjct: 276 AIIFFDEVDAVGGARGGGDGDDEIQRTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPAL 335
Query: 670 LRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCRE 729
RPGR DR + V PD + R +I ++H + + + + +AR TGAD+ +VC E
Sbjct: 336 TRPGRMDRKLEVGLPDLEGRTKILRIHAKSLSCEKAIRFELIARLCPNATGADLRSVCTE 395
Query: 730 AAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
A M A+R R + KDF +A+ K+
Sbjct: 396 AGMFAIR-----------------ARRKTINEKDFLDAVNKV 420
>sp|P46472|PRS7_XENLA 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
>gi|1079305|pir||S53709 MSS1 protein homolog - African
clawed frog >gi|695772|emb|CAA56438.1| (X80157) xMSS1
[Xenopus laevis] >gi|1095500|prf||2109230A MSS1-like
protein [Xenopus laevis]
Length = 433
Score = 217 bits (548), Expect = 3e-55
Identities = 146/403 (36%), Positives = 206/403 (50%), Gaps = 54/403 (13%)
Query: 403 KSKEEEIPQVLKKIDAEL--YDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAAL 460
K E++I Q+LKKI+ EL E T L L +LA AD L E +
Sbjct: 46 KQVEDDIQQLLKKIN-ELTGIKESDTGLAPPALWDLA--------ADKQTLQSEQPLQVA 96
Query: 461 R------------------RLIREGKIDFEAETIPREVLDELKV-TRRDFYEAL----KM 497
R + + +D + P ++ + ++V R+ Y+
Sbjct: 97 RCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPK 156
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++P+ + E P+V + D+GG ++ ++LRE VE PL +PE F GI PPKG+LL+G
Sbjct: 157 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFG 216
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTL A+AVA + A FI V G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDAI R G + R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 IDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
+R R T KDF EA+ K+ S +K
Sbjct: 397 IR-----------------ARRKVATEKDFLEAVNKVIKSYAK 422
Score = 210 bits (529), Expect = 5e-53
Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++E PL HPE F LGIEPPKGVLL+GPPGTGKTL A+AVAN
Sbjct: 172 VTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 231
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A +IF DEIDAI R + G
Sbjct: 232 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGG 291
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +L+ +DG RG + V+ ATNRPD +DPAL RPGR DR+IE +PD +GR
Sbjct: 292 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGR 351
Query: 356 KEILQIHTRGMPIEPDFR 373
I +IH R M +E D R
Sbjct: 352 THIFKIHARSMSVERDIR 369
>gb|AAF22521.1|AF123390_1 (AF123390) 26S proteasome AAA-ATPase subunit RPT1a [Arabidopsis
thaliana]
Length = 426
Score = 217 bits (548), Expect = 3e-55
Identities = 116/277 (41%), Positives = 164/277 (58%), Gaps = 20/277 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++PS + E P+V ++D+GG ++ +++RE VE P+ +PE F GI PPKG+L YG
Sbjct: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTLLA+AVA + A FI V G E++ K+VGE + +RE+F+ AR ++F DE
Sbjct: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
+DAI R G + R + +++ ++DG + V+ ATNRPD LDPALLR GR
Sbjct: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRSGR 329
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR + PD ++R +IFK+HTR M D+ + LAR TGADI +VC EA M A
Sbjct: 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYA 389
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKI 771
+R R VT KDF +A+ K+
Sbjct: 390 IR-----------------ARRKTVTEKDFLDAVNKV 409
Score = 211 bits (531), Expect = 3e-53
Identities = 104/198 (52%), Positives = 139/198 (69%), Gaps = 3/198 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG K+ IEK+RE++ELP+ HPE F KLGI+PPKGVL YGPPGTGKTLLA+AVAN
Sbjct: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A I+F DE+DAI R + V G
Sbjct: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +++ +DG +RG + V+ ATNRPD +DPAL R GR DR++E G+PD + R
Sbjct: 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRSGRLDRKVEFGLPDLESR 344
Query: 356 KEILQIHTRGMPIEPDFR 373
+I +IHTR M E D R
Sbjct: 345 TQIFKIHTRTMNCERDIR 362
>gi|6320197 (putative) 26S protease subunit; Rpt2p [Saccharomyces cerevisiae]
>gi|730904|sp|P40327|PRS4_YEAST 26S PROTEASE REGULATORY
SUBUNIT 4 HOMOLOG (TAT-BINDING HOMOLOG 5)
>gi|626989|pir||S46613 26S proteasome regulatory
particle chain RPT2 - yeast (Saccharomyces cerevisiae)
>gi|531758|emb|CAA56957.1| (X81070) probable regulatory
subunit of 26S proteasome; homologue to S4 subunit of
human 26S proteasome [Saccharomyces cerevisiae]
>gi|683690|emb|CAA88352.1| (Z48432) homolog to S4
subunit of human 26S proteasome (X81070) [Saccharomyces
cerevisiae] >gi|1430967|emb|CAA98563.1| (Z74055) ORF
YDL007w [Saccharomyces cerevisiae]
Length = 437
Score = 217 bits (546), Expect = 5e-55
Identities = 113/274 (41%), Positives = 170/274 (61%), Gaps = 20/274 (7%)
Query: 511 PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAV 570
P + DIGGLE QE++E+VE PL +PE ++ GI PPKG++LYG PGTGKTLLAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 571 ATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GT 627
A ++ A F+ + G E++ K++G+ + R+IF+ A + AP+++FIDEIDAI +R +
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 628 DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 687
R R + +LL ++DG + V VI ATN+ + LDPAL+RPGR DR IL PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 688 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPG 747
+ +I +HT M L++DV+L+ L + +GADI A+C EA ++A+R
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR----------- 405
Query: 748 MKASEIRRLAKVTMKDFEEALRKIGPSVSKETME 781
R +VT +DF++A ++ + +E +E
Sbjct: 406 ------ERRMQVTAEDFKQAKERVMKNKVEENLE 433
Score = 209 bits (527), Expect = 8e-53
Identities = 121/288 (42%), Positives = 167/288 (57%), Gaps = 30/288 (10%)
Query: 126 VRGDYIKVGVLGQEL----TFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGV-- 179
+RG+ + +G L + + V + T P V I F D + E + T +
Sbjct: 99 IRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158
Query: 180 ---------------------TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKG 218
+Y DIGGL+ I++I+E +ELPL HPEL+E++GI+PPKG
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 219 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAI 278
V+LYG PGTGKTLLAKAVAN+ +A F+ I G E++ KY G+ R++FK A ENAP+I
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278
Query: 279 IFIDEIDAIAPKR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPAL 335
+FIDEIDAI KR S GE E +R + +LL +DG RG V VI ATN+ + +DPAL
Sbjct: 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338
Query: 336 RRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILED 383
RPGR DR+I PD +K+IL IHT M + D + ++ +D
Sbjct: 339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDD 386
>gb|AAA97498.1| (L17040) ATPase [Saccharomyces cerevisiae]
Length = 437
Score = 216 bits (545), Expect = 7e-55
Identities = 113/274 (41%), Positives = 170/274 (61%), Gaps = 20/274 (7%)
Query: 511 PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAV 570
P + DIGGLE QE++E+VE PL +PE ++ GI PPKG++LYG PGTGKTLLAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 571 ATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GT 627
A ++ A F+ + G E++ K++G+ + R+IF+ A + AP+++FIDEIDAI +R +
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 628 DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 687
R R + +LL ++DG + V VI ATN+ + LDPAL+RPGR DR IL PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRNILFENPDLS 356
Query: 688 ARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPG 747
+ +I +HT M L++DV+L+ L + +GADI A+C EA ++A+R
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR----------- 405
Query: 748 MKASEIRRLAKVTMKDFEEALRKIGPSVSKETME 781
R +VT +DF++A ++ + +E +E
Sbjct: 406 ------ERRMQVTAEDFKQAKERVMKNKVEENLE 433
Score = 209 bits (526), Expect = 1e-52
Identities = 121/288 (42%), Positives = 166/288 (57%), Gaps = 30/288 (10%)
Query: 126 VRGDYIKVGVLGQEL----TFVVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGV-- 179
+RG+ + +G L + + V + T P V I F D + E + T +
Sbjct: 99 IRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158
Query: 180 ---------------------TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKG 218
+Y DIGGL+ I++I+E +ELPL HPEL+E++GI+PPKG
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 219 VLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAI 278
V+LYG PGTGKTLLAKAVAN+ +A F+ I G E++ KY G+ R++FK A ENAP+I
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278
Query: 279 IFIDEIDAIAPKR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPAL 335
+FIDEIDAI KR S GE E +R + +LL +DG RG V VI ATN+ + +DPAL
Sbjct: 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338
Query: 336 RRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILED 383
RPGR DR I PD +K+IL IHT M + D + ++ +D
Sbjct: 339 IRPGRIDRNILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDD 386
>gb|AAG38539.1|AF309805_4 (AF309805) putative 26S protease regulatory subunit 4 [Pneumocystis
carinii f. sp. carinii]
Length = 437
Score = 216 bits (545), Expect = 7e-55
Identities = 111/260 (42%), Positives = 164/260 (62%), Gaps = 5/260 (1%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++P L + P + DIGGLE QE++E VE PL +PE ++ GI PPKG++LYG
Sbjct: 162 IDPMVSVMKLDKAPTESYADIGGLESQIQEIKETVELPLTHPELYEEIGIRPPKGVILYG 221
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PGTGKTLLAKAVA ++ A F+ + G E++ K++G+ K +RE+F+ A+ +P+++FIDE
Sbjct: 222 EPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKFVRELFQTAQDNSPSIVFIDE 281
Query: 618 IDAIAPRRGTDVN---RVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
IDAI +R + R R + +LL ++DG + V VI ATNR + LDPAL+RPGR
Sbjct: 282 IDAIGTKRYDSTSSGEREIQRTMLELLNQLDGFDDRGDVKVIMATNRINDLDPALIRPGR 341
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGAD--IAAVCREAAM 732
DR IL PD+ + +IF++HT M L DDV ++E + +GAD + A+C EA +
Sbjct: 342 MDRKILFETPDQNTKRKIFQIHTSKMNLGDDVLIEEFITAKDEMSGADVKVIAICTEAGL 401
Query: 733 IAMRRALEKGIIKPGMKASE 752
+A+R + + KA E
Sbjct: 402 LALRERRMRVVADDFRKAKE 421
Score = 210 bits (528), Expect = 6e-53
Identities = 115/261 (44%), Positives = 162/261 (62%), Gaps = 21/261 (8%)
Query: 180 TYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANE 239
+Y DIGGL+ I++I+E +ELPL HPEL+E++GI PPKGV+LYG PGTGKTLLAKAVAN+
Sbjct: 178 SYADIGGLESQIQEIKETVELPLTHPELYEEIGIRPPKGVILYGEPGTGKTLLAKAVANQ 237
Query: 240 ANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVE 299
+A F+ I G E++ KY G+ + +RE+F+ A++N+P+I+FIDEIDAI KR + T E
Sbjct: 238 TSATFLRIVGSELIQKYLGDGPKFVRELFQTAQDNSPSIVFIDEIDAIGTKRYDSTSSGE 297
Query: 300 K---RVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
+ R + +LL +DG RG V VI ATNR + +DPAL RPGR DR+I PD+ ++
Sbjct: 298 REIQRTMLELLNQLDGFDDRGDVKVIMATNRINDLDPALIRPGRMDRKILFETPDQNTKR 357
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIE----------------E 400
+I QIHT M + D ++ + ++ G K+I E +
Sbjct: 358 KIFQIHTSKMNLGDDVLIEEFITAKDEM--SGADVKVIAICTEAGLLALRERRMRVVADD 415
Query: 401 VNKSKEEEIPQVLKKIDAELY 421
K+KE + K I ELY
Sbjct: 416 FRKAKEHVLKTKQKNIQGELY 436
>gi|6320602 ATPase (AAA family) component of the 26S proteasome complex; Rpt3p
[Saccharomyces cerevisiae] >gi|2133217|pir||S69678 26S
proteasome regulatory particle chain RPT3 - yeast
(Saccharomyces cerevisiae) >gi|927327|gb|AAB64836.1|
(U32274) Yta2p; CAI: 0.21 [Saccharomyces cerevisiae]
Length = 428
Score = 216 bits (544), Expect = 9e-55
Identities = 115/233 (49%), Positives = 157/233 (67%), Gaps = 4/233 (1%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P+V + D+GGL+ KQE+REAVE PL + ++ GI PP+G+LLYGPPGTGKT+L K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA ++A FI V G E + K++GE + +R++FR AR+ AP++IFIDE+D+IA +R
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 284
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA-P 684
T +R RI+ +LLT+MDG ++ V VI ATNR D LDPALLRPGR DR I P+
Sbjct: 285 QTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 344
Query: 685 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
D + R IF M LA + DL L R + +GA IAA+ +EA + A+R+
Sbjct: 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
Score = 193 bits (485), Expect = 7e-48
Identities = 104/219 (47%), Positives = 141/219 (63%), Gaps = 4/219 (1%)
Query: 164 SEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYG 223
S+ + + + VTY D+GGL ++IRE +ELPL +L+E++GI+PP+GVLLYG
Sbjct: 154 SDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYG 213
Query: 224 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDE 283
PPGTGKT+L KAVAN A FI +NG E + KY GE +R+VF+ A ENAP+IIFIDE
Sbjct: 214 PPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDE 273
Query: 284 IDAIAPKRSEV-TGEVE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGR 340
+D+IA KR + TG +R++ +LL MDG V VI ATNR D +DPAL RPGR
Sbjct: 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGR 333
Query: 341 FDREIEV-GVPDRQGRKEILQIHTRGMPIEPDFRKDDVL 378
DR+IE + DR+ R+ I M + P+ D ++
Sbjct: 334 LDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372
>sp|P33298|PRS6_YEAST 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (YNT1 PROTEIN)
(TAT-BINDING HOMOLOG 2) >gi|313880|emb|CAA51972.1|
(X73570) 26S proteasome subunit Rpt3 [Saccharomyces
cerevisiae] >gi|458389|gb|AAA81916.1| (U06229) Ynt1p
[Saccharomyces cerevisiae]
Length = 428
Score = 215 bits (542), Expect = 1e-54
Identities = 115/233 (49%), Positives = 156/233 (66%), Gaps = 4/233 (1%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P+V + D+GGL+ KQE+REAVE PL + ++ GI PP+G+LLYGPPGTGKT+L K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA ++A FI V G E + K++GE + +R++FR AR+ AP++IFIDE+D+IA +R
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 284
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVP-AP 684
T +R RI+ +LLT+MDG ++ V VI ATNR D LDPALLRPGR DR I P
Sbjct: 285 QTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLR 344
Query: 685 DEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
D + R IF M LA + DL L R + +GA IAA+ +EA + A+R+
Sbjct: 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
Score = 192 bits (483), Expect = 1e-47
Identities = 104/219 (47%), Positives = 141/219 (63%), Gaps = 4/219 (1%)
Query: 164 SEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYG 223
S+ + + + VTY D+GGL ++IRE +ELPL +L+E++GI+PP+GVLLYG
Sbjct: 154 SDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYG 213
Query: 224 PPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDE 283
PPGTGKT+L KAVAN A FI +NG E + KY GE +R+VF+ A ENAP+IIFIDE
Sbjct: 214 PPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDE 273
Query: 284 IDAIAPKRSEV-TGEVE--KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGR 340
+D+IA KR + TG +R++ +LL MDG V VI ATNR D +DPAL RPGR
Sbjct: 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGR 333
Query: 341 FDREIEVG-VPDRQGRKEILQIHTRGMPIEPDFRKDDVL 378
DR+IE + DR+ R+ I M + P+ D ++
Sbjct: 334 LDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLI 372
>sp|Q18787|PRS7_CAEEL PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7 >gi|7497832|pir||T20152
hypothetical protein C52E4.4 - Caenorhabditis elegans
>gi|3875191|emb|CAB01414.1| (Z78012) Similarity to Human
26S protease regulatory subunit 7 (SW:PRS7_HUMAN),
contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=326.4, E-value=1.1e-94, N=1~cDNA EST EMBL:T00856
comes from t>
Length = 435
Score = 215 bits (541), Expect = 2e-54
Identities = 148/446 (33%), Positives = 221/446 (49%), Gaps = 61/446 (13%)
Query: 370 PDFRKDDVLKIL-EDFKREGKFTKIIDKA-IEEVNKSKEEEIPQVLKKIDAELYDEVKTR 427
PD DD+ K +D K E K + +D+ I + + + + LK +DA++ + +K
Sbjct: 2 PDHLGDDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKK- 60
Query: 428 LIDKLLDELADVTHGFVG----------ADLAALAREAAMAALR--RLIREGK------- 468
++EL+ V G AD A+ +E + R ++I K
Sbjct: 61 -----VNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLI 115
Query: 469 ---------IDFEAETIPREVLDELKV--TRRDFYEALKM---VEPSALREVLIEVPNVH 514
+D P ++ + ++V R + L + ++P+ + E P+V
Sbjct: 116 NVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVT 175
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
+ D+GG +D ++LRE VE PL +PE + GI PPKG+LLYGPPGTGKTL A+AVA +
Sbjct: 176 YSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRT 235
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDVNR 631
A FI V G E++ K+VGE + +RE+F AR +IF DEIDA+ R G +
Sbjct: 236 DACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDN 295
Query: 632 VTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFE 691
R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR DR + PD R
Sbjct: 296 EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAH 355
Query: 692 IFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
I K+H + M + D+ LAR TGA+I +VC EA M A+R
Sbjct: 356 ILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIR--------------- 400
Query: 752 EIRRLAKVTMKDFEEALRKIGPSVSK 777
R T KDF EA+ K+ +K
Sbjct: 401 --ARRKVATEKDFLEAINKVVKGYAK 424
Score = 210 bits (530), Expect = 4e-53
Identities = 105/200 (52%), Positives = 136/200 (67%), Gaps = 3/200 (1%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
VTY D+GG KD IEK+RE++E PL HPE + LGIEPPKGVLLYGPPGTGKTL A+AVAN
Sbjct: 174 VTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVAN 233
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE--VTG 296
+A FI + G E++ KY GE +RE+F+ A +IF DEIDA+ R + G
Sbjct: 234 RTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGG 293
Query: 297 EVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGR 355
+ E +R + +L+ +DG RG + V+ ATNRPD +DPAL RPGR DR++E +PD GR
Sbjct: 294 DNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGR 353
Query: 356 KEILQIHTRGMPIEPDFRKD 375
IL+IH + M +E D R D
Sbjct: 354 AHILKIHAKQMSVERDIRYD 373
>gb|AAF52059.1| (AE003603) katanin-60 gene product [Drosophila melanogaster]
Length = 554
Score = 214 bits (540), Expect = 3e-54
Identities = 129/299 (43%), Positives = 184/299 (61%), Gaps = 22/299 (7%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP-KGILLYGPPGTG 562
R++L + P V W DI L D K+ L EAV P+ P+ FK GI P KG+L+ GPPGTG
Sbjct: 263 RDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPPGTG 320
Query: 563 KTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA 622
KT+LAKAVATE F V + SK+ GESEK +R +F AR AP+ IFIDEID++
Sbjct: 321 KTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLC 380
Query: 623 PRRGTD-VNRVTDRIINQLLTEMDGI---QENAGVV-VIAATNRPDILDPALLRPGRFDR 677
RRG++ + + R+ ++LL +MDG+ +E A VV V+AATN P +D AL R R ++
Sbjct: 381 SRRGSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RLEK 438
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
I +P P ++ R + K++ R + + D VDL +A +GY+GADI VCREA+M++MRR
Sbjct: 439 RIYIPLPSDEGREALLKINLREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRR 498
Query: 738 ALEKGIIKPGMKASEIRRLA------KVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ G+ +IR+LA V+ KDF EA+ + SVS+ ++ Y K +F
Sbjct: 499 KI------AGLTPEQIRQLATEEVDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMREF 551
Score = 138 bits (344), Expect = 2e-31
Identities = 84/197 (42%), Positives = 123/197 (61%), Gaps = 10/197 (5%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
V + DI L D + E + LP+ P+ F+ GI P KGVL+ GPPGTGKT+LAKAVA
Sbjct: 272 VRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPPGTGKTMLAKAVA 329
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A AP+ IFIDEID++ +R SE
Sbjct: 330 TECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEH 389
Query: 297 EVEKRVVAQLLALMDGL---KSRGKVI-VIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
E +RV ++LL MDG+ + + KV+ V+ ATN P ID ALRR R ++ I + +P
Sbjct: 390 EASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSD 447
Query: 353 QGRKEILQIHTRGMPIE 369
+GR+ +L+I+ R + ++
Sbjct: 448 EGREALLKINLREVKVD 464
>gi|5802970 AFG3-like 2; ATPase family gene 3-like 2; ATPase family gene 3,
yeast [Homo sapiens] >gi|5457357|emb|CAB48398.1|
(Y18314) paraplegin-like protein [Homo sapiens]
Length = 797
Score = 213 bits (538), Expect = 4e-54
Identities = 121/282 (42%), Positives = 165/282 (57%), Gaps = 25/282 (8%)
Query: 505 EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKT 564
+VL + +V + D+ G E+ K E+ E V + LK P+ ++ G PKG +L GPPGTGKT
Sbjct: 297 KVLKDEIDVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKT 355
Query: 565 LLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPR 624
LLAKA A E+ FI V G E L +VG +R++F AR+ AP ++FIDEIDA+ +
Sbjct: 356 LLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRK 415
Query: 625 RGT---DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILV 681
RG + +NQLL EMDG VV++A TNRPDILDPALLRPGRFDR I +
Sbjct: 416 RGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFI 475
Query: 682 PAPDEKARFEIFKVHTRGMPLADDVDLKELARR----TEGYTGADIAAVCREAAMIAMRR 737
PD K R IFKVH R + L ++ +LAR+ T G++GAD+A VC EAA+IA R
Sbjct: 476 GPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARH 535
Query: 738 ALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
+ + K FE+A+ ++ + K+T
Sbjct: 536 LSD-----------------SINQKHFEQAIERVIGGLEKKT 560
Score = 178 bits (448), Expect = 2e-43
Identities = 93/224 (41%), Positives = 139/224 (61%), Gaps = 6/224 (2%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F++ E K ++ + V ++D+ G ++ +I E + LK+P+ ++ LG + PKG +
Sbjct: 289 FSVGETTAKVLKDEID--VKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAI 345
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
L GPPGTGKTLLAKA A EAN FI ++G E + + G R+R++F A +NAP I+F
Sbjct: 346 LTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILF 405
Query: 281 IDEIDAIAPK--RSEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
IDEIDA+ K R G+ E + + QLL MDG + V+++ TNRPD +DPAL R
Sbjct: 406 IDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLR 465
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKIL 381
PGRFDR+I +G PD +GR I ++H R + ++ KD + + L
Sbjct: 466 PGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKL 509
>dbj|BAA21405.1| (AB004535) TAT-BINDING HOMOLOG 7. [Schizosaccharomyces pombe]
Length = 1241
Score = 213 bits (537), Expect = 6e-54
Identities = 118/295 (40%), Positives = 176/295 (59%), Gaps = 13/295 (4%)
Query: 493 EALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKG 552
+ ++ +P A RE N+ ++ IGGLED+ +L+E V PL YPE F ITPP+G
Sbjct: 395 KTIRSTDPFANRE------NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRG 448
Query: 553 ILLYGPPGTGKTLLAKAVATE-----SQANFIAVRGPEILSKWVGESEKNIREIFRKARQ 607
+L +GPPGTGKTL+A+ +A + +F +G + LSKWVGE+E+ +R +F +AR+
Sbjct: 449 VLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARR 508
Query: 608 AAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDP 667
P++IF DEID +AP R + + I++ LL MDG+ VVVI ATNRP+ LDP
Sbjct: 509 VQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLALMDGLDTRGQVVVIGATNRPNDLDP 568
Query: 668 ALLRPGRFDRLILVPAPDEKARFEIFKVHT-RGMPLADDVDLKELARRTEGYTGADIAAV 726
AL RPGRFDR P P+++AR +I ++++ P + L LA T GY GAD+ A+
Sbjct: 569 ALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKAL 628
Query: 727 CREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETME 781
C EAA+ A+RR + ++ ++ V++ DF A KI S + ++
Sbjct: 629 CTEAALNAVRRTFPQIYTSSDKFLIDLNEIS-VSICDFVVASEKIAVSTRRSDVK 682
Score = 198 bits (497), Expect = 3e-49
Identities = 150/470 (31%), Positives = 246/470 (51%), Gaps = 56/470 (11%)
Query: 162 NISEKPVKEVEKRMTT-GVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
+I EK ++ + + + IGGL+D+I +++EM+ LPL +PE+F L I PP+GVL
Sbjct: 391 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 450
Query: 221 LYGPPGTGKTLLAKAVA------NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEEN 274
+GPPGTGKTL+A+ +A N+ ++F+ G + +SK+ GE+E +LR +F+EA
Sbjct: 451 FHGPPGTGKTLMARVLAANCSTKNQKISFFLR-KGSDCLSKWVGEAERQLRLLFEEARRV 509
Query: 275 APAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPA 334
P+IIF DEID +AP RS + +V+ LLALMDGL +RG+V+VIGATNRP+ +DPA
Sbjct: 510 QPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLALMDGLDTRGQVVVIGATNRPNDLDPA 569
Query: 335 LRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKII 394
LRRPGRFDRE +P++Q R +IL+I++ + P + +L + E G +
Sbjct: 570 LRRPGRFDREFYFPLPNKQARMKILEINS--LHFSPKIPESYLLHLAESTSGYGG-ADLK 626
Query: 395 DKAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALARE 454
E + PQ+ D L D L+E++ FV +A E
Sbjct: 627 ALCTEAALNAVRRTFPQIYTSSDKFLID----------LNEISVSICDFV------VASE 670
Query: 455 AAMAALRRLIREGKIDFEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVH 514
+ RR + I + D K+ F ++++++ R + ++ V+
Sbjct: 671 KIAVSTRRSDVKPNI---------PITDSHKIL---FKKSIEVITSKIRRLLKLD---VY 715
Query: 515 WDDIGGLEDVKQE--LREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+ L+ + E +R+ LK +F+ P+ +L+ G G T L+K +
Sbjct: 716 LPTVESLQKLPAEELMRQKEINSLKTTMSFR------PR-LLITDIYGYGCTYLSKVLF- 767
Query: 573 ESQANFIAVRG---PEILSKWVGESEKNIREIFRKARQAAPTVIFIDEID 619
S + I V+ E+L + +IF +AR+ AP++IFI+ ++
Sbjct: 768 -SMLDGIHVQSLDISELLMDTTTSPRSLLTKIFSEARKNAPSIIFINNVE 816
>pir||T02738 hypothetical protein T9I4.16 - Arabidopsis thaliana
>gi|3461848|gb|AAC33234.1| (AC005315) putative AAA-type
ATPase [Arabidopsis thaliana]
Length = 807
Score = 212 bits (535), Expect = 1e-53
Identities = 122/271 (45%), Positives = 163/271 (60%), Gaps = 23/271 (8%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+++ D+ G ++ KQE+ E V + LK P+ ++ G PKG LL GPPGTGKTLLAKA A
Sbjct: 317 IYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 375
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR---GTDV 629
ES F+++ G + + +VG +R +F++ARQAAP++IFIDEIDAI R G
Sbjct: 376 ESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGG 435
Query: 630 NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKAR 689
N + +NQLL EMDG AGVVV+A TNRPDILD ALLRPGRFDR I + PD K R
Sbjct: 436 NDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGR 495
Query: 690 FEIFKVHTRGMPLADDVDL--KELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPG 747
+IFK++ + + L + + LA T G+ GADIA VC EAA+IA R
Sbjct: 496 DQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR----------- 544
Query: 748 MKASEIRRLAKVTMKDFEEALRKIGPSVSKE 778
A VTM FE A+ ++ + K+
Sbjct: 545 ------HEGATVTMAHFESAIDRVIGGLEKK 569
Score = 172 bits (432), Expect = 1e-41
Identities = 115/349 (32%), Positives = 178/349 (50%), Gaps = 21/349 (6%)
Query: 36 ISPGDVVEI-IGTKNTAAIAWPAYPEDE-----------GLGIIRMDGTIRKNAGVGLGD 83
+ PG V I + K+ A + + P+D+ G+ R G + +G D
Sbjct: 167 LEPGLVDHIDVSNKSVAKVYVRSTPKDQQTTDVVHGNGNGIPAKRTGGQYKYYFNIGSVD 226
Query: 84 EVTVRKAEVREAKKVTLAPTEPIRFGRDFVEWLHERLVGRPVVRGDYIKVGVLGQELTFV 143
+ E +EA V P+ + + V W E + P + + +G L +
Sbjct: 227 SFEEKLEEAQEALGVDRHEYVPVTYVSEMV-WYQEFMRFAPTL----LLLGTLIYGARRM 281
Query: 144 VTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLK 203
G FNI + + +K + ++D+ G + ++I E + LK
Sbjct: 282 QGGLGVGGTGGKNGRGIFNIGKATITRADKHSKNKIYFKDVAGCDEAKQEIMEFVHF-LK 340
Query: 204 HPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEER 263
+P+ +E LG + PKG LL GPPGTGKTLLAKA A E+ F++I+G + M + G R
Sbjct: 341 NPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSR 400
Query: 264 LREVFKEAEENAPAIIFIDEIDAI--APKRSEVTGEVEKR-VVAQLLALMDGLKSRGKVI 320
+R +F+EA + AP+IIFIDEIDAI A R + G E+ + QLL MDG + V+
Sbjct: 401 VRHLFQEARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVV 460
Query: 321 VIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIE 369
V+ TNRPD +D AL RPGRFDR+I + PD +GR +I +I+ + + ++
Sbjct: 461 VLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLD 509
>sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 >gi|7498868|pir||T20739 hypothetical protein
F11A10.1 - Caenorhabditis elegans
>gi|4008355|emb|CAA92596.1| (Z68297) Similarity to Yeast
TAT-binding homolog 7 (SW:TBP7_YEAST), contains
similarity to Pfam domain: PF00004 (ATPases associated
with various cellular activities (AAA)), Score=294.7,
E-value=3.7e-85, N=1; PF00439 (Bromodomain), Score=99.1,
E-value=7> >gi|4008373|emb|CAA92684.1| (Z68316)
Similarity to Yeast TAT-binding homolog 7
(SW:TBP7_YEAST), contains similarity to Pfam domain:
PF00004 (ATPases associated with various cellular
activities (AAA)), Score=294.7, E-value=3.7e-85, N=1;
PF00439 (Bromodomain), Score=99.1, E-value=7>
Length = 1242
Score = 212 bits (534), Expect = 1e-53
Identities = 129/338 (38%), Positives = 184/338 (54%), Gaps = 67/338 (19%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
+ V ++ +GGL I+ ++E++ P+ +PE+FEK I PPKGV+ YGPPGTGKTL+A+A+
Sbjct: 386 SSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARAL 445
Query: 237 ANEAN------AYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPK 290
ANE A+F+ G + +SK+ GESE +LR +F +A P+IIF DEID +AP
Sbjct: 446 ANECRRGANKVAFFMR-KGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPV 504
Query: 291 RSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVP 350
RS ++ +V+ LLALMDGL RG+V+VIGATNR D +DPALRRPGRFDRE+ +P
Sbjct: 505 RSSKQDQIHASIVSTLLALMDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLP 564
Query: 351 DRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIP 410
D R++IL IHT SK EE
Sbjct: 565 DLNARRQILDIHT----------------------------------------SKWEE-- 582
Query: 411 QVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKID 470
+ I + LD +A+ T G+ GADL L EA + LR R I
Sbjct: 583 ---------------NKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLRS--RYPHIY 625
Query: 471 FEAETIPREVLDELKVTRRDFYEALKMVEPSALREVLI 508
+E + +V +K+T F A++ + P++ R++ I
Sbjct: 626 MCSERLKLDVA-TIKITSEHFGHAMRRITPASRRDLTI 662
Score = 208 bits (525), Expect = 1e-52
Identities = 117/287 (40%), Positives = 172/287 (59%), Gaps = 12/287 (4%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
+V +D +GGL Q L+E V +P+ YPE F+ + I PPKG++ YGPPGTGKTL+A+A+A
Sbjct: 387 SVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARALA 446
Query: 572 TESQ--ANFIAV---RGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
E + AN +A +G + LSKWVGESE+ +R +F +A P++IF DEID +AP R
Sbjct: 447 NECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRS 506
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ +++ I++ LL MDG+ VVVI ATNR D LDPAL RPGRFDR + PD
Sbjct: 507 SKQDQIHASIVSTLLALMDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPDL 566
Query: 687 KARFEIFKVHT----RGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKG 742
AR +I +HT P+ + +D +A RT GY GAD+ +C EA +I +R
Sbjct: 567 NARRQILDIHTSKWEENKPIPETLD--AIAERTSGYCGADLKFLCTEAVLIGLRSRYPHI 624
Query: 743 IIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQ 789
+ ++ + K+T + F A+R+I P+ ++ R + E+
Sbjct: 625 YMCSERLKLDVATI-KITSEHFGHAMRRITPASRRDLTIPSRPLDER 670
>gb|AAF34687.1|AF223064_1 (AF223064) putative microtubule severing protein katanin p60
subunit [Drosophila melanogaster]
Length = 571
Score = 212 bits (533), Expect = 2e-53
Identities = 128/298 (42%), Positives = 183/298 (60%), Gaps = 21/298 (7%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP-KGILLYGPPGTG 562
R++L + P V W DI L D K+ L EAV P+ P+ FK GI P KG+L+ GP GTG
Sbjct: 281 RDILQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPSGTG 338
Query: 563 KTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA 622
KT+LAKAVATE F V + SK+ GESEK +R +F AR AP+ IFIDEID++
Sbjct: 339 KTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLC 398
Query: 623 PRRGTD-VNRVTDRIINQLLTEMDGI--QENAGVV-VIAATNRPDILDPALLRPGRFDRL 678
RRG++ + + R+ ++LL +MDG+ +E A VV V+AATN P +D AL R R ++
Sbjct: 399 SRRGSESEHEASRRVKSELLVQMDGVAREEQAKVVMVLAATNFPWDIDEALRR--RLEKR 456
Query: 679 ILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRA 738
I +P P ++ R + K++ R + + D VDL +A +GY+GADI VCREA+M++MRR
Sbjct: 457 IYIPLPSDEGREALLKINLREVKVDDSVDLTYVANELKGYSGADITNVCREASMMSMRRK 516
Query: 739 LEKGIIKPGMKASEIRRLA------KVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ G+ +IR+LA V+ KDF EA+ + SVS+ ++ Y K +F
Sbjct: 517 I------AGLTPEQIRQLATEEVDLPVSNKDFNEAMSRCNKSVSRADLDKYEKWMREF 568
Score = 135 bits (337), Expect = 2e-30
Identities = 83/196 (42%), Positives = 122/196 (61%), Gaps = 9/196 (4%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
V + DI L D + E + LP+ P+ F+ GI P KGVL+ GP GTGKT+LAKAVA
Sbjct: 290 VRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLMVGPSGTGKTMLAKAVA 347
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A AP+ IFIDEID++ +R SE
Sbjct: 348 TECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEH 407
Query: 297 EVEKRVVAQLLALMDGL--KSRGKVI-VIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
E +RV ++LL MDG+ + + KV+ V+ ATN P ID ALRR R ++ I + +P +
Sbjct: 408 EASRRVKSELLVQMDGVAREEQAKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSDE 465
Query: 354 GRKEILQIHTRGMPIE 369
GR+ +L+I+ R + ++
Sbjct: 466 GREALLKINLREVKVD 481
>emb|CAC05251.1| (AL391604) putative mitochondrial respiratory chain complexes
assembly protein [Schizosaccharomyces pombe]
Length = 773
Score = 211 bits (531), Expect = 3e-53
Identities = 118/273 (43%), Positives = 163/273 (59%), Gaps = 24/273 (8%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+ + D+ G+++ K+E+ E V++ LK P+ ++ G P+G +L GPPGTGKTLLAKA A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAG 351
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT----D 628
E+ F++V G E L +VG +R++F AR+ AP +IFIDEIDAI RG
Sbjct: 352 EANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFG 411
Query: 629 VNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 688
N + +NQLL EMDG + +VV A TNRPD+LDPALLRPGRFDR I + PD
Sbjct: 412 SNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGG 471
Query: 689 RFEIFKVHTRGMPLADDVDL--KELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKP 746
R +IFKVH + + AD++DL K LA T G+TGADI VC E A+IA R
Sbjct: 472 REQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAAR---------- 521
Query: 747 GMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
+V M FE+A+ ++ + K++
Sbjct: 522 -------SNSNEVQMVHFEQAIERVTAGLEKKS 547
Score = 174 bits (437), Expect = 3e-42
Identities = 87/208 (41%), Positives = 127/208 (60%), Gaps = 5/208 (2%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
F I + K + + D+ G+ + E+I E ++ LK+P+ +E+LG + P+G +
Sbjct: 275 FGIGKSRAKMFNHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAI 333
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
L GPPGTGKTLLAKA A EAN F++++G E + + G R+R++F A +NAP IIF
Sbjct: 334 LSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIF 393
Query: 281 IDEIDAIAPKRSE----VTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
IDEIDAI R + + + + QLL MDG S ++V TNRPD +DPAL
Sbjct: 394 IDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALL 453
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTR 364
RPGRFDR+I + PD GR++I ++H +
Sbjct: 454 RPGRFDRQITIDRPDIGGREQIFKVHLK 481
>gb|AAB33476.1| Tat-binding protein alpha, DdTBP alpha=Tat-binding protein 1
homolog/26S protease subunit homolog [Dictyostelium
discoideum, Peptide, 439 aa]
Length = 439
Score = 210 bits (530), Expect = 4e-53
Identities = 112/266 (42%), Positives = 160/266 (60%), Gaps = 20/266 (7%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
+ P + DIGGLE QE++EA+E PL +PE +K GI PPKG++LYG PGTGKTLLAK
Sbjct: 177 KAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYKEIGIKPPKGVILYGEPGTGKTLLAK 236
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR--- 625
AVA + F V G E + K++G+ + +RE++R A + AP+++FIDEID++ +R
Sbjct: 237 AVANQYLYTFKRVVGSEKIQKYLGDGPRLVRELYRVADECAPSIVFIDEIDSVFTKRYDS 296
Query: 626 GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+ R R + +LL ++DG I ATNR + LDPA +RPGR DR I P PD
Sbjct: 297 QSGGEREIQRTMLELLNQLDGFDARTDCKCIMATNRIETLDPARIRPGRIDRKIEFPLPD 356
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
K + +IFK+HT M L++DV+LKE + GADI A+C E+ ++A+R
Sbjct: 357 IKTKRKIFKLHTAKMNLSEDVNLKEFVMSKDDLCGADIKAICTESGLLALR--------- 407
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKI 771
R +VT DF++A K+
Sbjct: 408 --------ERRMRVTHTDFKKAKEKV 425
Score = 184 bits (463), Expect = 3e-45
Identities = 100/219 (45%), Positives = 147/219 (66%), Gaps = 5/219 (2%)
Query: 168 VKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 227
V +VEK T +Y DIGGL+ +++++E IELPL HPEL++++GI+PPKGV+LYG PGT
Sbjct: 172 VIKVEKAPTE--SYSDIGGLEAQVQEMKEAIELPLTHPELYKEIGIKPPKGVILYGEPGT 229
Query: 228 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAI 287
GKTLLAKAVAN+ F + G E + KY G+ +RE+++ A+E AP+I+FIDEID++
Sbjct: 230 GKTLLAKAVANQYLYTFKRVVGSEKIQKYLGDGPRLVRELYRVADECAPSIVFIDEIDSV 289
Query: 288 APKR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDRE 344
KR S+ GE E +R + +LL +DG +R I ATNR + +DPA RPGR DR+
Sbjct: 290 FTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDCKCIMATNRIETLDPARIRPGRIDRK 349
Query: 345 IEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILED 383
IE +PD + +++I ++HT M + D + + +D
Sbjct: 350 IEFPLPDIKTKRKIFKLHTAKMNLSEDVNLKEFVMSKDD 388
>gb|AAF32452.1| (AC021640) cell division protein FtsH-like protein [Arabidopsis
thaliana]
Length = 622
Score = 210 bits (529), Expect = 5e-53
Identities = 119/269 (44%), Positives = 165/269 (61%), Gaps = 6/269 (2%)
Query: 511 PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAV 570
P V +DD+ G++ K EL E V L+ +K G P+G+LL GPPGTGKTLLA+AV
Sbjct: 329 PTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVLLVGPPGTGKTLLARAV 387
Query: 571 ATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVN 630
A E+ F +V E + +VG IR++F AR+ +P++IFIDE+DA+ +RG N
Sbjct: 388 AGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKRGRSFN 447
Query: 631 RVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 690
D+ +NQLLTEMDG + + V+VIAATNRP+ LD AL RPGRF R +LV PD++ R
Sbjct: 448 DERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRR 507
Query: 691 EIFKVHTRGMPLADDVDL--KELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGM 748
+I +H R +PL +D L +A T G+ GAD+A + EAA++A RR E + M
Sbjct: 508 KILAIHLRDVPLEEDAFLICDLVASLTPGFVGADLANIVNEAALLAARRGGEAVAREDIM 567
Query: 749 KASEIRRLAKVTMKDFEEALRKIGPSVSK 777
+A E AK + D E R +G +SK
Sbjct: 568 EAIE---RAKFGINDKEARPRTLGNELSK 593
Score = 179 bits (449), Expect = 1e-43
Identities = 92/214 (42%), Positives = 137/214 (63%), Gaps = 2/214 (0%)
Query: 158 FTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPK 217
+ + S P K+ + T V ++D+ G+ +++ E++ L+ ++KLG P+
Sbjct: 311 YRQLSASNSPAKKRRSKNPT-VGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPR 368
Query: 218 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPA 277
GVLL GPPGTGKTLLA+AVA EA F +++ E + + G R+R++F A +N+P+
Sbjct: 369 GVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPS 428
Query: 278 IIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRR 337
IIFIDE+DA+ KR + + + QLL MDG +S KVIVI ATNRP+A+D AL R
Sbjct: 429 IIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALCR 488
Query: 338 PGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPD 371
PGRF R++ V PD++GR++IL IH R +P+E D
Sbjct: 489 PGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEED 522
>gb|AAF29398.1|AC009999_18 (AC009999) Contains similarity to YTA7 ATPase gene from
Saccharomyces cerevisiae gb|X81072, and contains
Bromodomain PF|00439, AAA PF|00004, and Sigma-54
PF|00158 transcription factor domains. [Arabidopsis
thaliana]
Length = 1251
Score = 209 bits (526), Expect = 1e-52
Identities = 115/281 (40%), Positives = 170/281 (59%), Gaps = 7/281 (2%)
Query: 512 NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVA 571
++++DDIGGL + +L+E V +PL YPE F +Y ITPP+G+LL GPPGTGKTL+A+A+A
Sbjct: 418 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 477
Query: 572 TES-----QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
+ + +F +G ++LSKWVGE+E+ ++ +F +A++ P++IF DEID +AP R
Sbjct: 478 CAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRS 537
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ + I++ LL MDG+ VV+I ATNR D +D AL RPGRFDR P
Sbjct: 538 SKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFSLPGC 597
Query: 687 KARFEIFKVHTRGMPLADDVDLK-ELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIK 745
+AR EI +HTR +LK ELA GY GAD+ A+C EAA+ A R +
Sbjct: 598 EARAEILDIHTRKWKHPPTRELKEELAATCVGYCGADLKALCTEAAIRAFREKYPQVYTS 657
Query: 746 PGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKI 786
A ++ L V F EA+ I P+ + ++ R +
Sbjct: 658 DDKYAIDV-GLVNVEKSHFVEAMSAITPAAHRGSVVQSRPL 697
Score = 203 bits (510), Expect = 8e-51
Identities = 100/191 (52%), Positives = 134/191 (69%), Gaps = 5/191 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
+ ++DIGGL + I ++EM+ PL +PE F I PP+GVLL GPPGTGKTL+A+A+A
Sbjct: 419 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALAC 478
Query: 239 EAN-----AYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE 293
A+ F G +++SK+ GE+E +L+ +F+EA+ N P+IIF DEID +AP RS
Sbjct: 479 AASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSS 538
Query: 294 VTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
++ +V+ LLALMDGL SRG+V++IGATNR DAID ALRRPGRFDRE +P +
Sbjct: 539 KQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFSLPGCE 598
Query: 354 GRKEILQIHTR 364
R EIL IHTR
Sbjct: 599 ARAEILDIHTR 609
>gb|AAF79577.1|AC022464_35 (AC022464) F22G5.10 [Arabidopsis thaliana]
Length = 843
Score = 208 bits (525), Expect = 1e-52
Identities = 119/272 (43%), Positives = 163/272 (59%), Gaps = 24/272 (8%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+++ D+ G E+ KQE+ E V + L+ P+ ++ G PKG LL GPPGTGKTLLAKA A
Sbjct: 332 IYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAG 390
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG----TD 628
ES F+++ G + + +VG +R +F++ARQ AP++IFIDEIDAI RG +
Sbjct: 391 ESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSG 450
Query: 629 VNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKA 688
N + +NQLL EMDG AGVVV+A TNRPDILD ALLRPGRFDR I + PD K
Sbjct: 451 GNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKG 510
Query: 689 RFEIFKVHTRGMPLADDVDL--KELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKP 746
R +IF+++ + + L + + LA T G+ GADIA VC EAA+IA R
Sbjct: 511 RDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAAR---------- 560
Query: 747 GMKASEIRRLAKVTMKDFEEALRKIGPSVSKE 778
A VTM F+ A+ ++ + K+
Sbjct: 561 -------HEGATVTMAHFDSAIDRVIGGLEKK 585
Score = 171 bits (429), Expect = 3e-41
Identities = 90/213 (42%), Positives = 135/213 (63%), Gaps = 5/213 (2%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
FNI + + +K + ++D+ G ++ ++I E + L++P+ +E LG + PKG L
Sbjct: 314 FNIGKAQITRADKNSKNKIYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGAL 372
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
L GPPGTGKTLLAKA A E+ F++I+G + M + G R+R +F+EA + AP+IIF
Sbjct: 373 LVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIF 432
Query: 281 IDEIDAI--APKRSEVTGEVEKR--VVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALR 336
IDEIDAI A R +G ++R + QLL MDG + V+V+ TNRPD +D AL
Sbjct: 433 IDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALL 492
Query: 337 RPGRFDREIEVGVPDRQGRKEILQIHTRGMPIE 369
RPGRFDR+I + PD +GR +I QI+ + + ++
Sbjct: 493 RPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLD 525
>gb|AAF91247.1|AF227503_1 (AF227503) proteasome regulatory ATPase subunit 5 [Trypanosoma
brucei]
Length = 445
Score = 206 bits (519), Expect = 7e-52
Identities = 106/234 (45%), Positives = 151/234 (64%), Gaps = 4/234 (1%)
Query: 507 LIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLL 566
++E P + D+GGL+ E+ EAV P+ E + GI PPKG+LLYG PGTGKT+L
Sbjct: 182 IVEKPKEKYTDVGGLDKQINEMIEAVVLPITEKEKYVRIGIKPPKGVLLYGSPGTGKTML 241
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRG 626
A+A A + A F+ + GP+++ ++GE + +R+ F A++ APT+IFIDE+DAI RR
Sbjct: 242 ARACAASTDACFLRLAGPQLVQMYIGEGARILRDAFALAKKRAPTIIFIDELDAIGSRRS 301
Query: 627 TD----VNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVP 682
+ +R R + +LL+ +DG V VIAATNR D+LDPALLR GR DR +
Sbjct: 302 DEGSKHGSREVQRRMLELLSLLDGFGSTDDVKVIAATNRIDVLDPALLRRGRIDRKVEFT 361
Query: 683 APDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMR 736
PDE+AR I ++H+R M L DV+ +E++R TE GA + AVC EA M+A+R
Sbjct: 362 LPDEEARAHILQIHSRRMALHGDVNFEEISRMTEDMNGAQLKAVCVEAGMLALR 415
Score = 187 bits (469), Expect = 5e-46
Identities = 103/246 (41%), Positives = 151/246 (60%), Gaps = 12/246 (4%)
Query: 149 PSGVVQITEFTDFNISEKP------VKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPL 202
P +V + + T + E P VK +E Y D+GGL I ++ E + LP+
Sbjct: 152 PQDLVGVNKDTFLVLEELPPEYDSRVKAMEIVEKPKEKYTDVGGLDKQINEMIEAVVLPI 211
Query: 203 KHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 262
E + ++GI+PPKGVLLYG PGTGKT+LA+A A +A F+ + GP+++ Y GE
Sbjct: 212 TEKEKYVRIGIKPPKGVLLYGSPGTGKTMLARACAASTDACFLRLAGPQLVQMYIGEGAR 271
Query: 263 RLREVFKEAEENAPAIIFIDEIDAIAPKRSEV-----TGEVEKRVVAQLLALMDGLKSRG 317
LR+ F A++ AP IIFIDE+DAI +RS+ + EV++R++ +LL+L+DG S
Sbjct: 272 ILRDAFALAKKRAPTIIFIDELDAIGSRRSDEGSKHGSREVQRRML-ELLSLLDGFGSTD 330
Query: 318 KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDV 377
V VI ATNR D +DPAL R GR DR++E +PD + R ILQIH+R M + D +++
Sbjct: 331 DVKVIAATNRIDVLDPALLRRGRIDRKVEFTLPDEEARAHILQIHSRRMALHGDVNFEEI 390
Query: 378 LKILED 383
++ ED
Sbjct: 391 SRMTED 396
>sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 6) (TBP-6)
>gi|2648047|emb|CAA71487.1| (Y10461) TBP6 protein
[Xenopus laevis]
Length = 405
Score = 206 bits (518), Expect = 1e-51
Identities = 111/239 (46%), Positives = 155/239 (64%), Gaps = 4/239 (1%)
Query: 509 EVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAK 568
E P + DIGGL+ QEL EA+ P+ + E F+ GI PPKG+L+YGPPGTGKTLLA+
Sbjct: 163 ERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLAR 222
Query: 569 AVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTD 628
A A +++A F+ + GP+++ ++G+ K +R+ F A++ AP++IFIDE+DAI +R
Sbjct: 223 ACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDS 282
Query: 629 V---NRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPD 685
+R R + +LL ++DG Q N V VIAATNR DILDPALLR GR DR I P P+
Sbjct: 283 EKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPN 342
Query: 686 EKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR-ALEKGI 743
E+AR I ++H+R M ++ DV+ +ELAR EA MIA+RR A E G+
Sbjct: 343 EEARARIMQIHSRKMNVSPDVNYEELARCPTISMALSAKQFGVEAGMIALRRGATEFGL 401
Score = 196 bits (492), Expect = 1e-48
Identities = 102/213 (47%), Positives = 144/213 (66%), Gaps = 5/213 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
EV++R T Y DIGGL I+++ E I LP+ H E FE LGI+PPKGVL+YGPPGTGK
Sbjct: 160 EVDERPTE--QYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 217
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TLLA+A A + A F+ + GP+++ + G+ + +R+ F A+E AP+IIFIDE+DAI
Sbjct: 218 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 277
Query: 290 KR--SEVTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
KR SE G+ E +R + +LL +DG + +V VI ATNR D +DPAL R GR DR+IE
Sbjct: 278 KRFDSEKAGDREVQRTMLELLNQLDGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIE 337
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLK 379
+P+ + R I+QIH+R M + PD +++ +
Sbjct: 338 FPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 370
>gb|AAG19908.1| (AE005074) cell division cycle protein; Cdc48e [Halobacterium sp.
NRC-1]
Length = 394
Score = 206 bits (518), Expect = 1e-51
Identities = 108/227 (47%), Positives = 148/227 (64%), Gaps = 5/227 (2%)
Query: 515 WDDIGGLEDVKQELREAVEWPL----KYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAV 570
+DD+GGL D +E+++ VE PL K F +G+ P GIL +GPPGTGKTLLAKAV
Sbjct: 150 YDDVGGLTDTIEEVKDVVEIPLRESDKETNRFNKHGVEPDTGILFHGPPGTGKTLLAKAV 209
Query: 571 ATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVN 630
A E+ ++ V GPEI+SKW GE+E IREIF A++ +IFIDE+D+IAP RG D
Sbjct: 210 AKETGSSIYLVNGPEIISKWYGETEDIIREIFSNAKKKKRAIIFIDEVDSIAPDRG-DTK 268
Query: 631 RVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARF 690
+ +I+ QLLTE+DG + VVVI ATN + +D A++RPGRFDR I P + R
Sbjct: 269 QFQRKIVAQLLTELDGFEPLNDVVVIGATNALNEVDSAIIRPGRFDRKIKFSKPTQTERM 328
Query: 691 EIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
EI + T+ + + VDL+ A T+G+TGAD++ V A I++RR
Sbjct: 329 EIIEKITKDVDFGESVDLQLFAESTDGWTGADLSGVISRAVTISIRR 375
Score = 194 bits (489), Expect = 2e-48
Identities = 102/238 (42%), Positives = 155/238 (64%), Gaps = 9/238 (3%)
Query: 133 VGVLGQELTFVVT--ATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDV 190
V + G ++T ++ P G+ F + N S+ +K+ E+ Y+D+GGL D
Sbjct: 102 VKIYGGKVTATISDEVIAPKGIED--RFGEQNRSKAYLKDPEEISEVDSGYDDVGGLTDT 159
Query: 191 IEKIREMIELPL----KHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIA 246
IE++++++E+PL K F K G+EP G+L +GPPGTGKTLLAKAVA E +
Sbjct: 160 IEEVKDVVEIPLRESDKETNRFNKHGVEPDTGILFHGPPGTGKTLLAKAVAKETGSSIYL 219
Query: 247 INGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQL 306
+NGPEI+SK+YGE+E+ +RE+F A++ AIIFIDE+D+IAP R + T + ++++VAQL
Sbjct: 220 VNGPEIISKWYGETEDIIREIFSNAKKKKRAIIFIDEVDSIAPDRGD-TKQFQRKIVAQL 278
Query: 307 LALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
L +DG + V+VIGATN + +D A+ RPGRFDR+I+ P + R EI++ T+
Sbjct: 279 LTELDGFEPLNDVVVIGATNALNEVDSAIIRPGRFDRKIKFSKPTQTERMEIIEKITK 336
>pir||S39349 MSS1 protein homolog - mouse
Length = 433
Score = 205 bits (517), Expect = 1e-51
Identities = 116/283 (40%), Positives = 162/283 (56%), Gaps = 20/283 (7%)
Query: 498 VEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYG 557
++P+ + E + + D+GG ++ ++L E VE PL +PE GI PPKG+LL+G
Sbjct: 157 IDPTVTMMQVEEKLDFTYSDVGGCKEQIEKLLEVVETPLLHPERLVNLGIEPPKGVLLFG 216
Query: 558 PPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDE 617
PPGTGKTL A+AVA + A FI V G E++ K+VGE + +RE+F AR +IF DE
Sbjct: 217 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDE 276
Query: 618 IDAIAPRR---GTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGR 674
+DAI R G + R + +L+ ++DG + V+ ATNRPD LDPAL+RPGR
Sbjct: 277 MDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGR 336
Query: 675 FDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIA 734
DR I PD + R IFK+H R M + D+ + LAR TGA+I +VC EA M A
Sbjct: 337 LDRKIEFSLPDLEGRTHIFKIHARSMSVERDIGFELLARLCPNSTGAEIRSVCTEAGMFA 396
Query: 735 MRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSK 777
+R R++A T KDF EA+ K+ S +K
Sbjct: 397 IRAR---------------RKIA--TEKDFLEAVNKVIKSYAK 422
Score = 201 bits (505), Expect = 3e-50
Identities = 102/205 (49%), Positives = 137/205 (66%), Gaps = 5/205 (2%)
Query: 170 EVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGK 229
+VE+++ TY D+GG K+ IEK+ E++E PL HPE LGIEPPKGVLL+GPPGTGK
Sbjct: 165 QVEEKLD--FTYSDVGGCKEQIEKLLEVVETPLLHPERLVNLGIEPPKGVLLFGPPGTGK 222
Query: 230 TLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAP 289
TL A+AVAN +A FI + G E++ KY GE +RE+F+ A +IF DE+DAI
Sbjct: 223 TLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEMDAIGG 282
Query: 290 KRSE--VTGEVE-KRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIE 346
R + G+ E +R + +L+ +DG RG + V+ ATNRPD +DPAL RPGR DR+IE
Sbjct: 283 ARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIE 342
Query: 347 VGVPDRQGRKEILQIHTRGMPIEPD 371
+PD +GR I +IH R M +E D
Sbjct: 343 FSLPDLEGRTHIFKIHARSMSVERD 367
>gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport growth defect-like protein
[Mesembryanthemum crystallinum]
Length = 317
Score = 205 bits (517), Expect = 1e-51
Identities = 120/313 (38%), Positives = 183/313 (58%), Gaps = 31/313 (9%)
Query: 506 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTL 565
++ E PNV W+D+ GLE KQ L+EAV P+K+P+ F P + LLYGPPGTGK+
Sbjct: 4 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSY 62
Query: 566 LAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR 625
LAKAVATE+ + F +V +++SKW+GESEK + +F+ AR++AP++IF+DEID++ +R
Sbjct: 63 LAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQR 122
Query: 626 GT-DVNRVTDRIINQLLTEMDGIQEN-AGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
G + + + RI +LL +M G+ N V+V+AATN P LD A+ R RFD+ I +P
Sbjct: 123 GEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIPL 180
Query: 684 PDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEK- 741
PD KAR +FKVH P + D + LAR+ EG++G+DIA ++ +R+ +
Sbjct: 181 PDLKARQHMFKVHLGDTPHNLTESDFEFLARKAEGFSGSDIAVCVKDVLFEPVRKTQDAM 240
Query: 742 -------------GIIKPGMKASEIRRLA-----------KVTMKDFEEALRKIGPSVSK 777
G +PG ++ LA + DFE+ L + P+VSK
Sbjct: 241 FFYKTSDDVWVPCGPRQPGAVQITMQDLAAKGLAAKIVPPPIARTDFEKVLARQRPTVSK 300
Query: 778 ETMEYYRKIQEQF 790
+E + + ++F
Sbjct: 301 SDLEVHERFTQEF 313
Score = 148 bits (371), Expect = 2e-34
Identities = 87/238 (36%), Positives = 141/238 (58%), Gaps = 10/238 (4%)
Query: 174 RMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLA 233
R V + D+ GL+ + ++E + LP+K P+ F P + LLYGPPGTGK+ LA
Sbjct: 6 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYLA 64
Query: 234 KAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE 293
KAVA EA++ F +++ +++SK+ GESE+ + +F+ A E+AP+IIF+DEID++ +R E
Sbjct: 65 KAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGE 124
Query: 294 VT-GEVEKRVVAQLLALMDGL-KSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD 351
E +R+ +LL M G+ + KV+V+ ATN P A+D A+RR RFD+ I + +PD
Sbjct: 125 GNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPD 182
Query: 352 RQGRKEILQIHTRGMP---IEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKE 406
+ R+ + ++H P E DF + + + E F + D E V K+++
Sbjct: 183 LKARQHMFKVHLGDTPHNLTESDF--EFLARKAEGFSGSDIAVCVKDVLFEPVRKTQD 238
>gb|AAK41191.1| AAA family ATPase, p60 katanin [Sulfolobus solfataricus]
Length = 372
Score = 203 bits (512), Expect = 5e-51
Identities = 120/294 (40%), Positives = 175/294 (58%), Gaps = 24/294 (8%)
Query: 506 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTL 565
V+ E P V + DI GL+DVK+ LREA+ +P K P+ F + P+GILLYGPPG GKT+
Sbjct: 93 VITEKPKVSFKDIVGLDDVKEALREAIIYPTKRPDLFP---LGWPRGILLYGPPGCGKTM 149
Query: 566 LAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKAR-----QAAPTVIFIDEIDA 620
+A AVA E + F+ + ++SKW+GE+EKN+ +F+ AR Q P +IFIDE+DA
Sbjct: 150 IAAAVANEIDSIFMQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPAIIFIDELDA 209
Query: 621 IAPRRGTDVNRVTDRIINQLLTEMDGI---QENAGVVVIAATNRPDILDPALLRPGRFDR 677
+ T+V R+ NQ L EMDG+ EN V VI ATN+P LD A LR RF +
Sbjct: 210 LLGVYSTEVGGEA-RVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLR--RFQK 266
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
I VP PD + R +FK +T + L +V L+ELA+ TEGYT +DI + + A + ++
Sbjct: 267 RIYVPLPDYEQRLSLFKYYTSKIKLDTEVSLEELAKLTEGYTASDIRDIVQAAHIKVVKE 326
Query: 738 ALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQFK 791
+ + +P +T++DF++ L+ PSV+ E ++ Y E+FK
Sbjct: 327 MFKNNLGEP----------RTITLQDFKDILKVRMPSVNPELIKAYEAWTEKFK 370
Score = 151 bits (378), Expect = 3e-35
Identities = 93/226 (41%), Positives = 134/226 (59%), Gaps = 14/226 (6%)
Query: 167 PVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPG 226
P +EV V+++DI GL DV E +RE I P K P+LF + P+G+LLYGPPG
Sbjct: 88 PPEEVVITEKPKVSFKDIVGLDDVKEALREAIIYPTKRPDLFP---LGWPRGILLYGPPG 144
Query: 227 TGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEE-----NAPAIIFI 281
GKT++A AVANE ++ F+ ++ +MSK+ GE+E+ + VFK A E N PAIIFI
Sbjct: 145 CGKTMIAAAVANEIDSIFMQLDAASVMSKWLGEAEKNVANVFKMAREESKKQNKPAIIFI 204
Query: 282 DEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRG---KVIVIGATNRPDAIDPALRRP 338
DE+DA+ S G E RV Q L MDGL + KV VIGATN+P +D A R
Sbjct: 205 DELDALLGVYSTEVGG-EARVRNQFLKEMDGLLDKSENYKVYVIGATNKPWRLDEAFLR- 262
Query: 339 GRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
RF + I V +PD + R + + +T + ++ + +++ K+ E +
Sbjct: 263 -RFQKRIYVPLPDYEQRLSLFKYYTSKIKLDTEVSLEELAKLTEGY 307
>dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa]
Length = 411
Score = 203 bits (510), Expect = 8e-51
Identities = 122/317 (38%), Positives = 184/317 (57%), Gaps = 32/317 (10%)
Query: 503 LREVLIEV-PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGT 561
LR ++ P+V W D+ GLE K+ L+EA P+K+P F +P K LLYGPPGT
Sbjct: 95 LRSAIVAAKPSVKWSDVAGLESAKEALQEAAILPIKFPHFFTGKR-SPWKAFLLYGPPGT 153
Query: 562 GKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAI 621
GK+ LA+AVATE + F ++ +++SKW+GESEK + +F+ AR+ AP++IFIDEID++
Sbjct: 154 GKSYLAEAVATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSIIFIDEIDSL 213
Query: 622 APRRG-TDVNRVTDRIINQLLTEMDGI-QENAGVVVIAATNRPDILDPALLRPGRFDRLI 679
+RG + N + RI +LL +M G N V+V+AATN P +LD A+ R RFD+ I
Sbjct: 214 CGQRGECNENEASRRIKTELLVQMQGFDNSNDKVLVLAATNMPHVLDQAMRR--RFDKCI 271
Query: 680 LVPAPDEKARFEIFKVHTRGMPLA-DDVDLKELARRTEGYTGADIAAVCREAAMIAMRRA 738
+P PD KAR + FK+H P + + D LA +TEG++G+DIA ++A +R+
Sbjct: 272 YIPLPDLKARKDTFKIHIGDTPHSLTEGDFVSLAYQTEGFSGSDIAVCVKDALFQPVRKT 331
Query: 739 LE-KGIIK-------------PGMKASEIRRLAK-----------VTMKDFEEALRKIGP 773
+ K IK PG + ++ LA ++ DF+E L + P
Sbjct: 332 QDAKFFIKADDDTWTPSEQSQPGSIQTTMQELASKGLAAKILLPPISKIDFDEVLVRQRP 391
Query: 774 SVSKETMEYYRKIQEQF 790
+VSK+ + Y K ++F
Sbjct: 392 TVSKKDLVVYEKFTQEF 408
Score = 149 bits (373), Expect = 1e-34
Identities = 82/191 (42%), Positives = 119/191 (61%), Gaps = 5/191 (2%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V + D+ GL+ E ++E LP+K P F P K LLYGPPGTGK+ LA+AVA
Sbjct: 106 VKWSDVAGLESAKEALQEAAILPIKFPHFFTGKR-SPWKAFLLYGPPGTGKSYLAEAVAT 164
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVT-GE 297
E ++ F +I+ +++SK+ GESE+ + +F+ A ENAP+IIFIDEID++ +R E E
Sbjct: 165 EVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSIIFIDEIDSLCGQRGECNENE 224
Query: 298 VEKRVVAQLLALMDGL-KSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
+R+ +LL M G S KV+V+ ATN P +D A+RR RFD+ I + +PD + RK
Sbjct: 225 ASRRIKTELLVQMQGFDNSNDKVLVLAATNMPHVLDQAMRR--RFDKCIYIPLPDLKARK 282
Query: 357 EILQIHTRGMP 367
+ +IH P
Sbjct: 283 DTFKIHIGDTP 293
>gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis thaliana]
Length = 435
Score = 201 bits (507), Expect = 2e-50
Identities = 115/313 (36%), Positives = 182/313 (57%), Gaps = 31/313 (9%)
Query: 506 VLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTL 565
++ E PN+ W D+ GLE KQ L+EAV P+K+P+ F P + LLYGPPGTGK+
Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSY 180
Query: 566 LAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR 625
LAKAVATE+ + F +V +++SKW+GESEK + +F AR++AP++IF+DEID++ R
Sbjct: 181 LAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTR 240
Query: 626 GT-DVNRVTDRIINQLLTEMDGIQEN-AGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
G + + + RI +LL +M G+ N V+V+AATN P LD A+ R RFD+ I +P
Sbjct: 241 GEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIPL 298
Query: 684 PDEKARFEIFKVHTRGMP-LADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALE-- 740
P+ KAR +FKVH P + D + L ++TEG++G+D++ ++ +R+ +
Sbjct: 299 PEAKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVSVCVKDVLFEPVRKTQDAM 358
Query: 741 -----------------KGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGPSVSK 777
G I+ M+ + LA+ +T DFE+ L + P+VSK
Sbjct: 359 FFFKSPDGTWMPCGPRHPGAIQTTMQDLATKGLAEKIIPPPITRTDFEKVLARQRPTVSK 418
Query: 778 ETMEYYRKIQEQF 790
++ + + ++F
Sbjct: 419 SDLDVHERFTQEF 431
Score = 148 bits (370), Expect = 2e-34
Identities = 80/204 (39%), Positives = 128/204 (62%), Gaps = 8/204 (3%)
Query: 174 RMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLA 233
R + + D+ GL+ + ++E + LP+K P+ F P + LLYGPPGTGK+ LA
Sbjct: 124 REKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYLA 182
Query: 234 KAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSE 293
KAVA EA++ F +++ +++SK+ GESE+ + +F+ A E+AP+IIF+DEID++ R E
Sbjct: 183 KAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGE 242
Query: 294 VT-GEVEKRVVAQLLALMDGL-KSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPD 351
E +R+ +LL M G+ + KV+V+ ATN P A+D A+RR RFD+ I + +P+
Sbjct: 243 GNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPE 300
Query: 352 RQGRKEILQIHTRGMP---IEPDF 372
+ R+ + ++H P EPDF
Sbjct: 301 AKARQHMFKVHLGDTPHNLTEPDF 324
>dbj|BAB01094.1| (AB026649) gene_id:MOJ10.20~unknown protein [Arabidopsis thaliana]
Length = 694
Score = 201 bits (506), Expect = 2e-50
Identities = 116/306 (37%), Positives = 179/306 (57%), Gaps = 14/306 (4%)
Query: 493 EALKMVEPSALREVLIEV----PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
E L+ +EP + V E+ PNV WDDI GLE K+ + E V WPL P+ FK +
Sbjct: 390 EKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-S 448
Query: 549 PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608
P KG+LL+GPPGTGKT++ KA+A E++A F + + SKW+GE EK +R +F A
Sbjct: 449 PGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCR 508
Query: 609 APTVIFIDEIDAIAPRRGTD-VNRVTDRIINQLLTEMDGIQENA-GVVVIAATNRPDILD 666
P VIF+DEID++ +R +D + + R+ Q L EM+G + +++I ATNRP LD
Sbjct: 509 QPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELD 568
Query: 667 PALLRPGRFDRLILVPAPDEKARFEIFK--VHTRGMPLADDVDLKELARRTEGYTGADIA 724
A R R + + +P P +AR I + + G+ D D+ + TEGY+G+D+
Sbjct: 569 EAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSDDDMNIICNLTEGYSGSDMK 626
Query: 725 AVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYR 784
+ ++A M +R AL++GI + ++R VT++DF++AL+++ PSVS+ + Y
Sbjct: 627 NLVKDATMGPLREALKRGIDITNLTKDDMR---LVTLQDFKDALQEVRPSVSQNELGIYE 683
Query: 785 KIQEQF 790
QF
Sbjct: 684 NWNNQF 689
Score = 142 bits (355), Expect = 1e-32
Identities = 102/332 (30%), Positives = 165/332 (48%), Gaps = 69/332 (20%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVAN 238
V ++DI GL+ + + EM+ PL P++F+ P KG+LL+GPPGTGKT++ KA+A
Sbjct: 414 VRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMIGKAIAG 472
Query: 239 EANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDA-IAPKRSEVTGE 297
EA A F I+ + SK+ GE E+ +R +F A PA+IF+DEID+ ++ ++S+ E
Sbjct: 473 EAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHE 532
Query: 298 VEKRVVAQLLALMDGLKSRG-KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRK 356
+R+ Q L M+G S ++++IGATNRP +D A RR R + + + +P + R
Sbjct: 533 SSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARR--RLTKRLYIPLPSSEARA 590
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
I+Q K++G FT
Sbjct: 591 WIIQ---------------------NLLKKDGLFT------------------------- 604
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETI 476
L D ++ + ++T G+ G+D+ L ++A M LR ++ G ID I
Sbjct: 605 -----------LSDDDMNIICNLTEGYSGSDMKNLVKDATMGPLREALKRG-ID-----I 647
Query: 477 PREVLDELK-VTRRDFYEALKMVEPSALREVL 507
D+++ VT +DF +AL+ V PS + L
Sbjct: 648 TNLTKDDMRLVTLQDFKDALQEVRPSVSQNEL 679
>gb|AAF76434.1|AC015445_1 (AC015445) Contains similarity to p60 katanin from Chlamydomonas
reinhardtii gb|AF205377 and contains an AAA domain
PF|00004. [Arabidopsis thaliana]
Length = 627
Score = 200 bits (503), Expect = 6e-50
Identities = 144/440 (32%), Positives = 232/440 (52%), Gaps = 30/440 (6%)
Query: 357 EILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKI 416
EI ++ T M + P +++D L++ + E + I I E+ K + + K+
Sbjct: 199 EIYKLFTNVMRLHPP-KEEDTLRLFKKQLGEDRRIVISRSNINELLKKRPQ-------KL 250
Query: 417 DAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETI 476
A ++ E + + LA V +L RE+ ++ RL + E
Sbjct: 251 VAFVFAEAEKAIGWAKNHYLASCPVPLVKGGRLSLPRESLEISIARLRK-------LEDN 303
Query: 477 PREVLDELKVTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQELREAVEWPL 536
+ LK +D YE + A E+ V ++DIG LEDVK+ L E V P+
Sbjct: 304 SLKPSQNLKNIAKDEYERNFVSAVVAPGEI-----GVKFEDIGALEDVKKALNELVILPM 358
Query: 537 KYPEAFKAYGITPP-KGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESE 595
+ PE F + P KGILL+GPPGTGKTLLAKA+ATE+ ANFI++ G + SKW G++E
Sbjct: 359 RRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAE 418
Query: 596 KNIREIFRKARQAAPTVIFIDEIDA-IAPRRGTDVNRVTDRIINQLLTEMDGI--QENAG 652
K + +F A + AP +IF+DEID+ + R G+ + T R+ N+ + DG+ +++
Sbjct: 419 KLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQR 478
Query: 653 VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLADDVDLKELA 712
++++ ATNRP LD A++R R R I V PD + R +I K+ L D ++LA
Sbjct: 479 ILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLA 536
Query: 713 RRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIG 772
+ TEGY+G+D+ +C AA ++ L++ + G +A L +++ DF ++ K+
Sbjct: 537 KETEGYSGSDLKNLCIAAAYRPVQELLQEE--QKGARAEASPGLRSLSLDDFIQSKAKVS 594
Query: 773 PSVSKE--TMEYYRKIQEQF 790
PSV+ + TM RK EQ+
Sbjct: 595 PSVAYDATTMNELRKWNEQY 614
Score = 164 bits (411), Expect = 3e-39
Identities = 100/267 (37%), Positives = 156/267 (57%), Gaps = 10/267 (3%)
Query: 178 GVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGI-EPPKGVLLYGPPGTGKTLLAKAV 236
GV +EDIG L+DV + + E++ LP++ PELF + + P KG+LL+GPPGTGKTLLAKA+
Sbjct: 334 GVKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKAL 393
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVT 295
A EA A FI+I G + SK++G++E+ + +F A + AP IIF+DEID++ R
Sbjct: 394 ATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSE 453
Query: 296 GEVEKRVVAQLLALMDGLKSRG--KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQ 353
E +R+ + +A DGL+S+ +++++GATNRP +D A+ R R R I V +PD +
Sbjct: 454 HEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAE 511
Query: 354 GRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVL 413
R +IL+I +E DF+ + + K E + I A V + +EE
Sbjct: 512 NRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDLKNLCIAAAYRPVQELLQEE----Q 567
Query: 414 KKIDAELYDEVKTRLIDKLLDELADVT 440
K AE +++ +D + A V+
Sbjct: 568 KGARAEASPGLRSLSLDDFIQSKAKVS 594
>gi|11230794 fidgetin-like 1 [Mus musculus]
>gi|10442029|gb|AAG17290.1|AF263914_1 (AF263914)
fidgetin-like 1 [Mus musculus]
Length = 683
Score = 197 bits (496), Expect = 4e-49
Identities = 113/307 (36%), Positives = 177/307 (56%), Gaps = 19/307 (6%)
Query: 493 EALKMVEPSALREVLIEV----PNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGIT 548
+ LK VEP + V+ E+ P VHWDDI G+E K ++E V WP+ P+ F
Sbjct: 383 DCLKNVEPRMVELVMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLR-G 441
Query: 549 PPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQA 608
PPKGILL+GPPGTGKTL+ K +A++S A F ++ + SKWVGE EK +R +F AR
Sbjct: 442 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 501
Query: 609 APTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDGIQENA--GVVVIAATNRPDILD 666
P VIFIDEID++ +RG + + RI + L ++DG ++ ++V+ ATNRP +D
Sbjct: 502 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 561
Query: 667 PALLRPGRFDRLILVPAPDEKARFEIF-KVHTRGMPLADDVDLKELARRTEGYTGADIAA 725
A R R + + +P P+ AR +I + ++ D + + ++++G++GAD+
Sbjct: 562 EAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQ 619
Query: 726 VCREAAMIAMR--RALEKGIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYY 783
+CREA++ +R A + I P ++R +A + DFE A + + P+VS + +E Y
Sbjct: 620 LCREASLGPIRSLHAADIATISP----DQVRPIAYI---DFENAFKTVRPTVSPKDLELY 672
Query: 784 RKIQEQF 790
E F
Sbjct: 673 ENWNETF 679
Score = 140 bits (350), Expect = 5e-32
Identities = 76/211 (36%), Positives = 125/211 (59%), Gaps = 16/211 (7%)
Query: 162 NISEKPVKEVEKRMTT-----------GVTYEDIGGLKDVIEKIREMIELPLKHPELFEK 210
++++ +K VE RM V ++DI G++ I+E++ P+ P++F
Sbjct: 379 HLTDDCLKNVEPRMVELVMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTG 438
Query: 211 LGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKE 270
L PPKG+LL+GPPGTGKTL+ K +A+++ A F +I+ + SK+ GE E+ +R +F
Sbjct: 439 LR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAV 497
Query: 271 AEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDG--LKSRGKVIVIGATNRP 328
A PA+IFIDEID++ +R + E +R+ + L +DG S +++V+GATNRP
Sbjct: 498 ARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 557
Query: 329 DAIDPALRRPGRFDREIEVGVPDRQGRKEIL 359
ID A RR R + + + +P+ RK+I+
Sbjct: 558 QEIDEAARR--RLVKRLYIPLPEASARKQIV 586
>gi|6325281 Mitochondrial member of the CDC48/PAS1/SEC18 family of ATPases;
Yme1p [Saccharomyces cerevisiae]
>gi|418575|sp|P32795|YME1_YEAST YME1 PROTEIN
(TAT-BINDING HOMOLOG 11) (OSD1 PROTEIN)
>gi|2133216|pir||S46608 YTA11 protein - yeast
(Saccharomyces cerevisiae) >gi|295582|gb|AAA02883.1|
(L14616) putative ATPase [Saccharomyces cerevisiae]
>gi|809589|emb|CAA89278.1| (Z49274) Yme1p [Saccharomyces
cerevisiae] >gi|1314098|emb|CAA95020.1| (Z71255) Yme1p
[Saccharomyces cerevisiae]
Length = 747
Score = 196 bits (494), Expect = 6e-49
Identities = 109/277 (39%), Positives = 161/277 (57%), Gaps = 18/277 (6%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
+ V + NV +DD+ G ++ + EL E V++ LK P +++ G PKG+LL GPPGTGK
Sbjct: 269 KSVDVAKTNVKFDDVCGCDEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGK 327
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
TLLA+A A E+ +F + G E +VG K IR++F +AR AP +IFIDE+DAI
Sbjct: 328 TLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGG 387
Query: 624 RRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+R + +NQLL E+DG + +G+++I ATN P+ LD AL RPGRFD+++ V
Sbjct: 388 KRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDL 447
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PD + R +I K H + + LAD+VD +AR T G +GA++A + +AA+ A +
Sbjct: 448 PDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQ------- 500
Query: 744 IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
+ V M FE A KI ++TM
Sbjct: 501 ----------KNAVSVDMSHFEWAKDKILMGAERKTM 527
Score = 171 bits (430), Expect = 2e-41
Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 143 VVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPL 202
++T + G ITE T S + + T V ++D+ G + ++ E+++ L
Sbjct: 242 ILTYSFSEGFKYITENTTLLKSSEVADKSVDVAKTNVKFDDVCGCDEARAELEEIVDF-L 300
Query: 203 KHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 262
K P +E LG + PKGVLL GPPGTGKTLLA+A A EA F ++G E Y G +
Sbjct: 301 KDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAK 360
Query: 263 RLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVI 322
R+R++F +A APAIIFIDE+DAI KR+ K+ + QLL +DG +I+I
Sbjct: 361 RIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIII 420
Query: 323 GATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
GATN P+A+D AL RPGRFD+ + V +PD +GR +IL+ H +
Sbjct: 421 GATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMK 462
>emb|CAA56954.1| (X81067) probable mitochondrial protein; nearly identical to YME1
[Saccharomyces cerevisiae]
Length = 747
Score = 196 bits (494), Expect = 6e-49
Identities = 109/277 (39%), Positives = 161/277 (57%), Gaps = 18/277 (6%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
+ V + NV +DD+ G ++ + EL E V++ LK P +++ G PKG+LL GPPGTGK
Sbjct: 269 KSVDVAKTNVKFDDVCGCDEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGK 327
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
TLLA+A A E+ +F + G E +VG K IR++F +AR AP +IFIDE+DAI
Sbjct: 328 TLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGG 387
Query: 624 RRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+R + +NQLL E+DG + +G+++I ATN P+ LD AL RPGRFD+++ V
Sbjct: 388 KRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDL 447
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PD + R +I K H + + LAD+VD +AR T G +GA++A + +AA+ A +
Sbjct: 448 PDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQ------- 500
Query: 744 IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
+ V M FE A KI ++TM
Sbjct: 501 ----------KNAVSVDMSHFEWAKDKILMGAERKTM 527
Score = 171 bits (430), Expect = 2e-41
Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 143 VVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPL 202
++T + G ITE T S + + T V ++D+ G + ++ E+++ L
Sbjct: 242 ILTYSFSEGFKYITENTTLLKSSEVADKSVDVAKTNVKFDDVCGCDEARAELEEIVDF-L 300
Query: 203 KHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 262
K P +E LG + PKGVLL GPPGTGKTLLA+A A EA F ++G E Y G +
Sbjct: 301 KDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAK 360
Query: 263 RLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVI 322
R+R++F +A APAIIFIDE+DAI KR+ K+ + QLL +DG +I+I
Sbjct: 361 RIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIII 420
Query: 323 GATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
GATN P+A+D AL RPGRFD+ + V +PD +GR +IL+ H +
Sbjct: 421 GATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMK 462
>emb|CAA54091.1| (X76643) Afg3p [Saccharomyces cerevisiae]
Length = 761
Score = 196 bits (494), Expect = 6e-49
Identities = 114/278 (41%), Positives = 161/278 (57%), Gaps = 29/278 (10%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+ + ++ G ++ KQE+ E V + LK P + G P+G +L GPPGTGKTLLAKA A
Sbjct: 285 ISFKNVAGCDEAKQEIMEFVHF-LKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAG 343
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT----- 627
E+ F++V G E + +VG +R++F +AR AP++IFIDEIDAI RG
Sbjct: 344 EANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALG 403
Query: 628 DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 687
N +R +NQLL EMDG + VVV+A TNRPD+LD AL+RPGRFDR I + +PD
Sbjct: 404 GANDERERTLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVN 463
Query: 688 ARFEIFKVHTRGMP----LADDVD--LKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
R +I+ VH + + L DD++ +LA T G+TGADIA C EAA+IA R
Sbjct: 464 GRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAAR----- 518
Query: 742 GIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
+T+ FE+A+ ++ + K+T
Sbjct: 519 ------------HNDPYITIHHFEQAIERVIAGLEKKT 544
Score = 176 bits (441), Expect = 1e-42
Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 59/306 (19%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
FN+ + K K ++++++ G + ++I E + LK+P + KLG + P+G +
Sbjct: 267 FNVGKSRAKLFNKETDIKISFKNVAGCDEAKQEIMEFVHF-LKNPGKYTKLGAKIPRGAI 325
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
L GPPGTGKTLLAKA A EAN F++++G E + + G R+R++F +A AP+IIF
Sbjct: 326 LSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIF 385
Query: 281 IDEIDAIAPKRSE-----VTGEVEKRVVAQLLALMDGLKSRGKVIVIGATNRPDAIDPAL 335
IDEIDAI +R + + +R + QLL MDG + +V+V+ TNRPD +D AL
Sbjct: 386 IDEIDAIGKERGKGGALGGANDERERTLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNAL 445
Query: 336 RRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIID 395
RPGRFDR I++ PD GR++I +H + + ++P D
Sbjct: 446 MRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDD-------------------- 485
Query: 396 KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
++ L +LA +T GF GAD+A EA
Sbjct: 486 ---------------------------------MNNLSGKLATLTPGFTGADIANACNEA 512
Query: 456 AMAALR 461
A+ A R
Sbjct: 513 ALIAAR 518
>dbj|BAA03839.1| (D16332) OSD1 gene product [Saccharomyces cerevisiae]
Length = 747
Score = 196 bits (494), Expect = 6e-49
Identities = 109/277 (39%), Positives = 161/277 (57%), Gaps = 18/277 (6%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGK 563
+ V + NV +DD+ G ++ + EL E V++ LK P +++ G PKG+LL GPPGTGK
Sbjct: 269 KSVDVAKTNVKFDDVCGCDEARAELEEIVDF-LKDPTKYESLGGKLPKGVLLTGPPGTGK 327
Query: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
TLLA+A A E+ +F + G E +VG K IR++F +AR AP +IFIDE+DAI
Sbjct: 328 TLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGG 387
Query: 624 RRGTDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+R + +NQLL E+DG + +G+++I ATN P+ LD AL RPGRFD+++ V
Sbjct: 388 KRNPKDQAYAKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDL 447
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PD + R +I K H + + LAD+VD +AR T G +GA++A + +AA+ A +
Sbjct: 448 PDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQ------- 500
Query: 744 IKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKETM 780
+ V M FE A KI ++TM
Sbjct: 501 ----------KNAVSVDMSHFEWAKDKILMGAERKTM 527
Score = 171 bits (430), Expect = 2e-41
Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 143 VVTATQPSGVVQITEFTDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPL 202
++T + G ITE T S + + T V ++D+ G + ++ E+++ L
Sbjct: 242 ILTYSFSEGFKYITENTTLLKSSEVADKSVDVAKTNVKFDDVCGCDEARAELEEIVDF-L 300
Query: 203 KHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEE 262
K P +E LG + PKGVLL GPPGTGKTLLA+A A EA F ++G E Y G +
Sbjct: 301 KDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAK 360
Query: 263 RLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEKRVVAQLLALMDGLKSRGKVIVI 322
R+R++F +A APAIIFIDE+DAI KR+ K+ + QLL +DG +I+I
Sbjct: 361 RIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGIIII 420
Query: 323 GATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQIHTR 364
GATN P+A+D AL RPGRFD+ + V +PD +GR +IL+ H +
Sbjct: 421 GATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMK 462
>gb|AAF51127.1| (AE003580) CG3326 gene product [Drosophila melanogaster]
Length = 477
Score = 195 bits (491), Expect = 1e-48
Identities = 111/277 (40%), Positives = 163/277 (58%), Gaps = 11/277 (3%)
Query: 515 WDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATES 574
W+DI GLE K EA+ PL+ P+ F PP+G+LL+GPPGTGKTL+AK++A+++
Sbjct: 203 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC-PPRGVLLFGPPGTGKTLIAKSIASQA 261
Query: 575 QANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTD 634
+A F ++ + SKWVG++EK ++ +F A P +IFIDE+D++ +R + N T
Sbjct: 262 KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTL 321
Query: 635 RIINQLLTEMDGI--QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEI 692
R+ N+ L +DG E V+VI ATNRP LD A+ R RF R + VP P +AR +I
Sbjct: 322 RLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKI 379
Query: 693 FKVHTRGMPLADDV-DLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKAS 751
+ + DV + ELA T+GY+GAD+ +CR A+M +R + M+
Sbjct: 380 IEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLR-----SLTPDQMEVI 434
Query: 752 EIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQE 788
E +L VTM DF++ALR I SVS E + + E
Sbjct: 435 ETHQLPAVTMDDFKQALRVISKSVSSEDCKQFEAWNE 471
Score = 162 bits (407), Expect = 1e-38
Identities = 113/327 (34%), Positives = 167/327 (50%), Gaps = 70/327 (21%)
Query: 181 YEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 240
+EDI GL+ E I +PL+ P+LF + PP+GVLL+GPPGTGKTL+AK++A++A
Sbjct: 203 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRC-PPRGVLLFGPPGTGKTLIAKSIASQA 261
Query: 241 NAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTGEVEK 300
A F +IN + SK+ G++E+ ++ +F A + PAIIFIDE+D++ KRS E
Sbjct: 262 KAKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTL 321
Query: 301 RVVAQLLALMDGLKSRG--KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEI 358
R+ + L +DG S +V+VIGATNRP +D A+RR RF R + V +P R+ R+
Sbjct: 322 RLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQ-- 377
Query: 359 LQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQVLKKIDA 418
KII+K I +V + ++ QV+
Sbjct: 378 ---------------------------------KIIEKLIHQVKHNL--DVRQVI----- 397
Query: 419 ELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREAAMAALRRLIREGKIDFEAETIPR 478
ELA++T G+ GAD+ L R A+MA LR L + E +P
Sbjct: 398 ----------------ELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQLP- 440
Query: 479 EVLDELKVTRRDFYEALKMVEPSALRE 505
VT DF +AL+++ S E
Sbjct: 441 ------AVTMDDFKQALRVISKSVSSE 461
>gi|6320854 ATP-dependent metalloprotease; Afg3p [Saccharomyces cerevisiae]
>gi|728820|sp|P39925|AFG3_YEAST MITOCHONDRIAL
RESPIRATORY CHAIN COMPLEXES ASSEMBLY PROTEIN AFG3
(TAT-BINDING HOMOLOG 10) >gi|626985|pir||S46611 YTA10
protein - yeast (Saccharomyces cerevisiae)
>gi|531750|emb|CAA56953.1| (X81066) probable
mitochondrial protein [Saccharomyces cerevisiae]
>gi|603609|gb|AAB64550.1| (U18778) Afg3p [Saccharomyces
cerevisiae]
Length = 761
Score = 194 bits (488), Expect = 3e-48
Identities = 113/278 (40%), Positives = 160/278 (56%), Gaps = 29/278 (10%)
Query: 513 VHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVAT 572
+ + ++ G ++ KQE+ E V + LK P + G P+G +L GPPGTGKTLLAKA A
Sbjct: 285 ISFKNVAGCDEAKQEIMEFVHF-LKNPGKYTKLGAKIPRGAILSGPPGTGKTLLAKATAG 343
Query: 573 ESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGT----- 627
E+ F++V G E + +VG +R++F +AR AP++IFIDEIDAI RG
Sbjct: 344 EANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALG 403
Query: 628 DVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDEK 687
N + +NQLL EMDG + VVV+A TNRPD+LD AL+RPGRFDR I + +PD
Sbjct: 404 GANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVN 463
Query: 688 ARFEIFKVHTRGMP----LADDVD--LKELARRTEGYTGADIAAVCREAAMIAMRRALEK 741
R +I+ VH + + L DD++ +LA T G+TGADIA C EAA+IA R
Sbjct: 464 GRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAAR----- 518
Query: 742 GIIKPGMKASEIRRLAKVTMKDFEEALRKIGPSVSKET 779
+T+ FE+A+ ++ + K+T
Sbjct: 519 ------------HNDPYITIHHFEQAIERVIAGLEKKT 544
Score = 174 bits (436), Expect = 4e-42
Identities = 103/306 (33%), Positives = 157/306 (50%), Gaps = 59/306 (19%)
Query: 161 FNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVL 220
FN+ + K K ++++++ G + ++I E + LK+P + KLG + P+G +
Sbjct: 267 FNVGKSRAKLFNKETDIKISFKNVAGCDEAKQEIMEFVHF-LKNPGKYTKLGAKIPRGAI 325
Query: 221 LYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIF 280
L GPPGTGKTLLAKA A EAN F++++G E + + G R+R++F +A AP+IIF
Sbjct: 326 LSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIF 385
Query: 281 IDEIDAIAPKRSE---VTGEVEKR--VVAQLLALMDGLKSRGKVIVIGATNRPDAIDPAL 335
IDEIDAI +R + + G ++R + QLL MDG + +V+V+ TNRPD +D AL
Sbjct: 386 IDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNAL 445
Query: 336 RRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIID 395
RPGRFDR I++ PD GR++I +H + + ++P D
Sbjct: 446 MRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDD-------------------- 485
Query: 396 KAIEEVNKSKEEEIPQVLKKIDAELYDEVKTRLIDKLLDELADVTHGFVGADLAALAREA 455
++ L +LA +T GF GAD+A EA
Sbjct: 486 ---------------------------------MNNLSGKLATLTPGFTGADIANACNEA 512
Query: 456 AMAALR 461
A+ A R
Sbjct: 513 ALIAAR 518
>gb|AAD31547.1|U53149_5 (U53149) Contains similarity to Pfam domain: PF00004 (AAA),
Score=233.7, E-value=8.6e-67, N=1 [Caenorhabditis
elegans]
Length = 512
Score = 194 bits (487), Expect = 4e-48
Identities = 121/329 (36%), Positives = 177/329 (53%), Gaps = 20/329 (6%)
Query: 474 ETIPREVLDELK-------VTRRDFYEALKMVEPSALREVLIEVPNVHWDDIGGLEDVKQ 526
ET+ R +D+ V R + V L + +++ V DD+ G K
Sbjct: 190 ETVKRVKVDKASLPMHQNPVNRAALLNGVDKVIGERLLDEVLDNTGVRMDDVAGCHSAKA 249
Query: 527 ELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLAKAVATESQANFIAVRGPEI 586
L EAV P P FK P KGILL+GPPG GKTLLAKAVA ES+ F + +
Sbjct: 250 ALEEAVILPALNPNLFKGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSL 308
Query: 587 LSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRIINQLLTEMDG 646
SKWVG+SEK IR +F+ AR A P++IFIDEID+I R V+ R+ + L + DG
Sbjct: 309 TSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEKDAEVSRRMKTEFLVQFDG 368
Query: 647 IQENAG--VVVIAATNRPDILDPALLRPGRFDRLILVPAPDEKARFEIFKVHTRGMPLAD 704
+A ++VI ATNRP LD A+LR RF + I++ PDE+AR E+ + + D
Sbjct: 369 ATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMD 426
Query: 705 DV---DLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKPGMKASEIRRLAKVTM 761
+ D++ +A T G++ +D+ A+C+EAAM+ +R I + + ++ ++ K+
Sbjct: 427 GLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIRE-----IDRSKLSMTDGEKIRKIRA 481
Query: 762 KDFEEALRKIGPSVSKETMEYYRKIQEQF 790
DF+ ALR I PS S++ M F
Sbjct: 482 SDFDTALRTIRPSTSQKIMSKLSDFSRSF 510
Score = 150 bits (376), Expect = 4e-35
Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 16/280 (5%)
Query: 177 TGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAV 236
TGV +D+ G + E + LP +P LF+ L +P KG+LL+GPPG GKTLLAKAV
Sbjct: 234 TGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLR-QPVKGILLFGPPGNGKTLLAKAV 292
Query: 237 ANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKRSEVTG 296
A E+ F I+ + SK+ G+SE+ +R +F+ A P+IIFIDEID+I +RSE
Sbjct: 293 AGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEKDA 352
Query: 297 EVEKRVVAQLLALMDGLKSRG--KVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDRQG 354
EV +R+ + L DG S +++VIGATNRP +D A+ R RF + I + +PD +
Sbjct: 353 EVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEA 410
Query: 355 RKEILQIHTRGMPIEPDFRKDDVLKILED---FKREGKFTKIIDKA---IEEVNKSKEEE 408
RKE++ + + D+ I + F + A I E+++SK
Sbjct: 411 RKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDRSKLSM 470
Query: 409 IP-QVLKKIDAELYD----EVKTRLIDKLLDELADVTHGF 443
+ ++KI A +D ++ K++ +L+D + F
Sbjct: 471 TDGEKIRKIRASDFDTALRTIRPSTSQKIMSKLSDFSRSF 510
>gi|7305635 YME1-like 1 (S. cerevisiae); ATP-dependent metalloprotease FtsH1
[Mus musculus] >gi|3600100|gb|AAC35558.1| (AF090430)
ATP-dependent metalloprotease FtsH1 [Mus musculus]
Length = 715
Score = 193 bits (485), Expect = 7e-48
Identities = 114/279 (40%), Positives = 164/279 (57%), Gaps = 19/279 (6%)
Query: 508 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLA 567
+++ NV ++ + G+E+ KQEL+E VE+ LK P+ F G PKGILL GPPGTGKTLLA
Sbjct: 273 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTVLGGKLPKGILLVGPPGTGKTLLA 331
Query: 568 KAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR-G 626
+AVA E+ F G E +VG IR +FR+A+ AP VIFIDE+D++ +R
Sbjct: 332 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE 391
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ + + INQLL EMDG + N GV++I ATN P+ LD AL+RPGRFD + VP PD
Sbjct: 392 SPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDV 451
Query: 687 KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKP 746
K R EI K + + VD + +AR T G++GA++ + +AA +K
Sbjct: 452 KGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAA------------LKA 499
Query: 747 GMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
+ E+ VTMK+ E + KI + ++E K
Sbjct: 500 AVDGKEM-----VTMKELEFSKDKILMGPERRSVEIDNK 533
Score = 171 bits (428), Expect = 3e-41
Identities = 95/216 (43%), Positives = 135/216 (61%), Gaps = 14/216 (6%)
Query: 158 FTDFNISEKPVKEVEKRMTTG------------VTYEDIGGLKDVIEKIREMIELPLKHP 205
F + + + P V R TTG VT+E + G+++ ++++E++E LK+P
Sbjct: 245 FGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF-LKNP 303
Query: 206 ELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLR 265
+ F LG + PKG+LL GPPGTGKTLLA+AVA EA+ F +G E + G R+R
Sbjct: 304 QKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIR 363
Query: 266 EVFKEAEENAPAIIFIDEIDAIAPKRSE-VTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
+F+EA+ NAP +IFIDE+D++ KR E ++ + QLLA MDG K VI+IGA
Sbjct: 364 NLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGA 423
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
TN P+A+D AL RPGRFD ++ V PD +GR EIL+
Sbjct: 424 TNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILK 459
>gb|AAD20962.1| (AF070656) FtsH homolog [Homo sapiens]
Length = 517
Score = 193 bits (485), Expect = 7e-48
Identities = 114/279 (40%), Positives = 164/279 (57%), Gaps = 19/279 (6%)
Query: 508 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLA 567
+++ NV ++ + G+E+ KQEL+E VE+ LK P+ F G PKGILL GPPGTGKTLLA
Sbjct: 77 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTILGGKLPKGILLVGPPGTGKTLLA 135
Query: 568 KAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR-G 626
+AVA E+ F G E +VG IR +FR+A+ AP VIFIDE+D++ +R
Sbjct: 136 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE 195
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ + + INQLL EMDG + N GV++I ATN P+ LD AL+RPGRFD + VP PD
Sbjct: 196 SPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDV 255
Query: 687 KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKP 746
K R EI K + + VD + +AR T G++GA++ + +AA +K
Sbjct: 256 KGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAA------------LKA 303
Query: 747 GMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
+ E+ VTMK+ E + KI + ++E K
Sbjct: 304 AVDGKEM-----VTMKELEFSKDKILMGPERRSVEIDNK 337
Score = 170 bits (427), Expect = 5e-41
Identities = 95/216 (43%), Positives = 135/216 (61%), Gaps = 14/216 (6%)
Query: 158 FTDFNISEKPVKEVEKRMTTG------------VTYEDIGGLKDVIEKIREMIELPLKHP 205
F + + + P V R TTG VT+E + G+++ ++++E++E LK+P
Sbjct: 49 FGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF-LKNP 107
Query: 206 ELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLR 265
+ F LG + PKG+LL GPPGTGKTLLA+AVA EA+ F +G E + G R+R
Sbjct: 108 QKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIR 167
Query: 266 EVFKEAEENAPAIIFIDEIDAIAPKRSE-VTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
+F+EA+ NAP +IFIDE+D++ KR E ++ + QLLA MDG K VI+IGA
Sbjct: 168 NLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGA 227
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
TN P+A+D AL RPGRFD ++ V PD +GR EIL+
Sbjct: 228 TNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILK 263
>gi|7657689 YME1 (S.cerevisiae)-like 1 [Homo sapiens]
>gi|5689742|emb|CAB51858.1| (AJ132637) ATP-dependent
metalloprotease YME1L [Homo sapiens]
Length = 716
Score = 193 bits (485), Expect = 7e-48
Identities = 114/279 (40%), Positives = 164/279 (57%), Gaps = 19/279 (6%)
Query: 508 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLA 567
+++ NV ++ + G+E+ KQEL+E VE+ LK P+ F G PKGILL GPPGTGKTLLA
Sbjct: 274 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTILGGKLPKGILLVGPPGTGKTLLA 332
Query: 568 KAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR-G 626
+AVA E+ F G E +VG IR +FR+A+ AP VIFIDE+D++ +R
Sbjct: 333 RAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIE 392
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ + + INQLL EMDG + N GV++I ATN P+ LD AL+RPGRFD + VP PD
Sbjct: 393 SPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDV 452
Query: 687 KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKP 746
K R EI K + + VD + +AR T G++GA++ + +AA +K
Sbjct: 453 KGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAA------------LKA 500
Query: 747 GMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
+ E+ VTMK+ E + KI + ++E K
Sbjct: 501 AVDGKEM-----VTMKELEFSKDKILMGPERRSVEIDNK 534
Score = 170 bits (427), Expect = 5e-41
Identities = 95/216 (43%), Positives = 135/216 (61%), Gaps = 14/216 (6%)
Query: 158 FTDFNISEKPVKEVEKRMTTG------------VTYEDIGGLKDVIEKIREMIELPLKHP 205
F + + + P V R TTG VT+E + G+++ ++++E++E LK+P
Sbjct: 246 FGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF-LKNP 304
Query: 206 ELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLR 265
+ F LG + PKG+LL GPPGTGKTLLA+AVA EA+ F +G E + G R+R
Sbjct: 305 QKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIR 364
Query: 266 EVFKEAEENAPAIIFIDEIDAIAPKRSE-VTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
+F+EA+ NAP +IFIDE+D++ KR E ++ + QLLA MDG K VI+IGA
Sbjct: 365 NLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGA 424
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
TN P+A+D AL RPGRFD ++ V PD +GR EIL+
Sbjct: 425 TNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILK 460
>pir||T01303 hypothetical protein T14P8.7 - Arabidopsis thaliana
>gi|3193292|gb|AAC19276.1| (AF069298) similar to ATPases
associated with various cellular activites (Pfam:
AAA.hmm, score: 230.91) [Arabidopsis thaliana]
>gi|7269007|emb|CAB80740.1| (AL161494) coded for by A.
thaliana cDNA T88606, coded for by A. thaliana cDNA
T75804~strong similarity to similar to ATPases
associated with various cellular activites (Pfam:
AAA.hmm, score: 230.91)~Contains ATP/GTP-binding site
motif A (P-loop) AA111>
Length = 371
Score = 192 bits (484), Expect = 9e-48
Identities = 127/345 (36%), Positives = 194/345 (55%), Gaps = 24/345 (6%)
Query: 457 MAALRRLIREGKIDFEAETIPR--EVLDELKVTRRDFYEALKMV------EPSALREVLI 508
M ++++ K+ AE+I + L +++ + ++LK V E L +V+
Sbjct: 1 MICTEPIVKDNKLVISAESISYGLQTLHDIQNENKSLKKSLKDVVTENEFEKKLLSDVIP 60
Query: 509 EVP-NVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP-KGILLYGPPGTGKTLL 566
V +DDIG LE+VK+ L+E V PL+ PE F +T P KGILL+GPPGTGKT+L
Sbjct: 61 PSDIGVSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTML 120
Query: 567 AKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR- 625
AKAVATE+ ANFI + I SKW GE EK ++ +F A + AP+VIF+DE+D++ RR
Sbjct: 121 AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 180
Query: 626 GTDVNRVTDRIINQLLTEMDGI--QENAGVVVIAATNRPDILDPALLRPGRFDRLILVPA 683
+ ++ N+ + DG+ ++ V+V+AATNRP LD A++R R R ++V
Sbjct: 181 NPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIR--RLPRRLMVNL 238
Query: 684 PDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGI 743
PD R +I V +A DVDL+ +A T+GY+G+D+ +C AA +R LEK
Sbjct: 239 PDATNRSKILSVILAKEEIAPDVDLEAIANMTDGYSGSDLKNLCVTAAHFPIREILEKEK 298
Query: 744 IKPGMKASEIR---------RLAKVTMKDFEEALRKIGPSVSKET 779
+ +E R + +TM DF+ A ++ SVS ++
Sbjct: 299 KEKTAAQAENRPTPPLYSCTDVRSLTMNDFKAAHDQVCASVSSDS 343
Score = 159 bits (399), Expect = 9e-38
Identities = 92/231 (39%), Positives = 145/231 (61%), Gaps = 8/231 (3%)
Query: 159 TDFNISEKPVKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGI-EPPK 217
T+ +K + +V GV+++DIG L++V E ++E++ LPL+ PELF+K + +P K
Sbjct: 46 TENEFEKKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTK 105
Query: 218 GVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPA 277
G+LL+GPPGTGKT+LAKAVA EA A FI I+ I SK++GE E+ ++ VF A + AP+
Sbjct: 106 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPS 165
Query: 278 IIFIDEIDAIAPKRSEVTGEVE--KRVVAQLLALMDGL--KSRGKVIVIGATNRPDAIDP 333
+IF+DE+D++ +R E GE E +++ + + DGL K R +V+V+ ATNRP +D
Sbjct: 166 VIFVDEVDSMLGRR-ENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDE 224
Query: 334 ALRRPGRFDREIEVGVPDRQGRKEILQIHTRGMPIEPDFRKDDVLKILEDF 384
A+ R R R + V +PD R +IL + I PD + + + + +
Sbjct: 225 AVIR--RLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAIANMTDGY 273
>emb|CAB99462.1| (AJ295618) putative ATPases [Homo sapiens]
Length = 517
Score = 192 bits (484), Expect = 9e-48
Identities = 114/279 (40%), Positives = 164/279 (57%), Gaps = 19/279 (6%)
Query: 508 IEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPPKGILLYGPPGTGKTLLA 567
+++ NV ++ + G+E+ KQEL+E VE+ LK P+ F G PKGILL GPPGTGKTLLA
Sbjct: 77 VQMKNVTFEHVKGVEEAKQELQEVVEF-LKNPQKFTILGGKLPKGILLVGPPGTGKTLLA 135
Query: 568 KAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAPRR-G 626
+AVA E+ F G E +VG IR +FR+A+ AP VIFIDE+D++ +R
Sbjct: 136 RAVAGEADVPFYYASGSEFDEMFVGVGATRIRNLFREAKANAPCVIFIDELDSVGGKRIE 195
Query: 627 TDVNRVTDRIINQLLTEMDGIQENAGVVVIAATNRPDILDPALLRPGRFDRLILVPAPDE 686
+ ++ + + INQLL EMDG + N GV++I ATN P+ LD AL+RPGRFD + VP PD
Sbjct: 196 SPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDV 255
Query: 687 KARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRRALEKGIIKP 746
K R EI K + + VD + +AR T G++GA++ + +AA +K
Sbjct: 256 KGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAA------------LKA 303
Query: 747 GMKASEIRRLAKVTMKDFEEALRKIGPSVSKETMEYYRK 785
+ E+ VTMK+ E + KI + ++E K
Sbjct: 304 AVDGKEM-----VTMKELEFSKDKILMGPERRSVEIDNK 337
Score = 170 bits (426), Expect = 6e-41
Identities = 95/216 (43%), Positives = 135/216 (61%), Gaps = 14/216 (6%)
Query: 158 FTDFNISEKPVKEVEKRMTTG------------VTYEDIGGLKDVIEKIREMIELPLKHP 205
F + + + P V R TTG VT+E + G+++ ++++E++E LK+P
Sbjct: 49 FGIYGLLKNPFLSVRFRTTTGLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEF-LKNP 107
Query: 206 ELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLR 265
+ F LG + PKG+LL GPPGTGKTLLA+AVA EA+ F +G E + G R+R
Sbjct: 108 QKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGATRIR 167
Query: 266 EVFKEAEENAPAIIFIDEIDAIAPKRSE-VTGEVEKRVVAQLLALMDGLKSRGKVIVIGA 324
+F+EA+ NAP +IFIDE+D++ KR E ++ + QLLA MDG K VI+IGA
Sbjct: 168 NLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGA 227
Query: 325 TNRPDAIDPALRRPGRFDREIEVGVPDRQGRKEILQ 360
TN P+A+D AL RPGRFD ++ V PD +GR EIL+
Sbjct: 228 TNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILK 263
>gb|AAF51954.1| (AE003601) CG1193 gene product [alt 2] [Drosophila melanogaster]
Length = 669
Score = 191 bits (480), Expect = 3e-47
Identities = 114/299 (38%), Positives = 178/299 (59%), Gaps = 22/299 (7%)
Query: 504 REVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPEAFKAYGITPP-KGILLYGPPGTG 562
+++L P + W D+ GL + K L+EAV P+ PE FK GI P +G+L+ GPPGTG
Sbjct: 378 KDILQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPEFFK--GIRRPWRGVLMVGPPGTG 435
Query: 563 KTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIA 622
KT+LAKAVATE F V + SK+ GESEK +R +F AR AP+ IFIDEIDA+
Sbjct: 436 KTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALC 495
Query: 623 PRRGTD-VNRVTDRIINQLLTEMDGI----QENAGVVVIAATNRPDILDPALLRPGRFDR 677
RG+D + + R +LL +MDG+ QE ++V+AATN P +D A R RF++
Sbjct: 496 ASRGSDSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRR--RFEK 553
Query: 678 LILVPAPDEKARFEIFKVHTRGMPLADDVDLKELARRTEGYTGADIAAVCREAAMIAMRR 737
I +P P+E R + K+ + + L+ ++ + +GY+G+DI+ VCR+A+M+AMRR
Sbjct: 554 RIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRR 613
Query: 738 ALEKGIIKPGMKASEIRRLAK------VTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
+ G +I+++ + +T++DF++A + SVS + + + K E++
Sbjct: 614 LIS------GRTPDQIKQIRREEVDQPITLQDFQDARLRTKKSVSADDVARFEKWMEEY 666
Score = 134 bits (334), Expect = 4e-30
Identities = 86/251 (34%), Positives = 136/251 (53%), Gaps = 10/251 (3%)
Query: 179 VTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPP-KGVLLYGPPGTGKTLLAKAVA 237
+ + D+ GL + ++E + LP+ PE F+ GI P +GVL+ GPPGTGKT+LAKAVA
Sbjct: 387 IKWTDVAGLNEAKTILQEAVVLPVIMPEFFK--GIRRPWRGVLMVGPPGTGKTMLAKAVA 444
Query: 238 NEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKR-SEVTG 296
E F ++ + SKY GESE+ +R +F+ A AP+ IFIDEIDA+ R S+
Sbjct: 445 TECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGSDSEH 504
Query: 297 EVEKRVVAQLLALMDGLKSRGK----VIVIGATNRPDAIDPALRRPGRFDREIEVGVPDR 352
E +R A+LL MDGL + + ++V+ ATN P ID A RR RF++ I + +P+
Sbjct: 505 EASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRR--RFEKRIYIPLPNE 562
Query: 353 QGRKEILQIHTRGMPIEPDFRKDDVLKILEDFKREGKFTKIIDKAIEEVNKSKEEEIPQV 412
R +L++ + + + P + L+ + D ++ + + P
Sbjct: 563 GTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRLISGRTPDQ 622
Query: 413 LKKIDAELYDE 423
+K+I E D+
Sbjct: 623 IKQIRREEVDQ 633
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291059996
Number of Sequences: 2977
Number of extensions: 13208148
Number of successful extensions: 53239
Number of sequences better than 1.0e-10: 534
Number of HSP's better than 0.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 49292
Number of HSP's gapped (non-prelim): 1677
length of query: 795
length of database: 189,106,746
effective HSP length: 60
effective length of query: 735
effective length of database: 153,197,526
effective search space: 112600181610
effective search space used: 112600181610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 169 (70.2 bits)