BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2090 (PAB2090) DE:Hypothetical protein
         (199 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75153 hypothetical protein PAB2090 - Pyrococcus abyssi (st...   387  e-107
pir||A71195 hypothetical protein PH1832 - Pyrococcus horikoshii ...   340  5e-93
sp|P20298|YORX_PYRWO HYPOTHETICAL PROTEIN IN GAPDH 3'REGION (ORF...   251  5e-66

>pir||G75153 hypothetical protein PAB2090 - Pyrococcus abyssi (strain Orsay)
           >gi|5457820|emb|CAB49310.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 199
           
 Score =  387 bits (984), Expect = e-107
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MDEATLQAYVPYFKAIVVIIAIVYFGYIFLNKEKFKVARTVAISAVAAALVTAMTMVIRI 60
           MDEATLQAYVPYFKAIVVIIAIVYFGYIFLNKEKFKVARTVAISAVAAALVTAMTMVIRI
Sbjct: 1   MDEATLQAYVPYFKAIVVIIAIVYFGYIFLNKEKFKVARTVAISAVAAALVTAMTMVIRI 60

Query: 61  PIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSAIADLIGYPSWALFTLIIKGSEGL 120
           PIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSAIADLIGYPSWALFTLIIKGSEGL
Sbjct: 61  PIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSAIADLIGYPSWALFTLIIKGSEGL 120

Query: 121 VVGYFSKGEPNYSKILIGTVLGGFIMVLGYVSVSYVLYGPAGAISELYNDTVQAVSGIVI 180
           VVGYFSKGEPNYSKILIGTVLGGFIMVLGYVSVSYVLYGPAGAISELYNDTVQAVSGIVI
Sbjct: 121 VVGYFSKGEPNYSKILIGTVLGGFIMVLGYVSVSYVLYGPAGAISELYNDTVQAVSGIVI 180

Query: 181 GGGLGYILKKRLGSSVSLL 199
           GGGLGYILKKRLGSSVSLL
Sbjct: 181 GGGLGYILKKRLGSSVSLL 199


>pir||A71195 hypothetical protein PH1832 - Pyrococcus horikoshii
           >gi|3258269|dbj|BAA30952.1| (AP000007) 202aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 202
           
 Score =  340 bits (864), Expect = 5e-93
 Identities = 167/198 (84%), Positives = 186/198 (93%)

Query: 1   MDEATLQAYVPYFKAIVVIIAIVYFGYIFLNKEKFKVARTVAISAVAAALVTAMTMVIRI 60
           M+EATL+AYVPYFKAIV+ IAI+YF YI LN+EKFKVA+TVAISAV AALVTAMTMVIRI
Sbjct: 4   MNEATLEAYVPYFKAIVIGIAIIYFVYILLNREKFKVAKTVAISAVMAALVTAMTMVIRI 63

Query: 61  PIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSAIADLIGYPSWALFTLIIKGSEGL 120
           PIPASQGYLNFGDIMIML +VLFGPLVGGFAGGVGSA ADL+GYPSWALFTL+IKG+EG+
Sbjct: 64  PIPASQGYLNFGDIMIMLTSVLFGPLVGGFAGGVGSAFADLLGYPSWALFTLVIKGTEGI 123

Query: 121 VVGYFSKGEPNYSKILIGTVLGGFIMVLGYVSVSYVLYGPAGAISELYNDTVQAVSGIVI 180
           +VGYFSKGE NY KIL+GTVLGG +MV+GYVSV+YVLYGPAGAI ELYND VQAVSGIVI
Sbjct: 124 IVGYFSKGEANYGKILLGTVLGGSVMVIGYVSVAYVLYGPAGAIGELYNDIVQAVSGIVI 183

Query: 181 GGGLGYILKKRLGSSVSL 198
           GGGLGYILKKRLG+ ++L
Sbjct: 184 GGGLGYILKKRLGNMLAL 201


>sp|P20298|YORX_PYRWO HYPOTHETICAL PROTEIN IN GAPDH 3'REGION (ORF X)
           >gi|81090|pir||S10655 hypothetical protein X -
           Pyrococcus woesei (fragment)
           Length = 148
           
 Score =  251 bits (634), Expect = 5e-66
 Identities = 117/143 (81%), Positives = 134/143 (92%)

Query: 51  VTAMTMVIRIPIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSAIADLIGYPSWALF 110
           VT  TM++RIPIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSA+AD+IGYPSWALF
Sbjct: 2   VTVTTMLVRIPIPASQGYLNFGDIMIMLVAVLFGPLVGGFAGGVGSALADVIGYPSWALF 61

Query: 111 TLIIKGSEGLVVGYFSKGEPNYSKILIGTVLGGFIMVLGYVSVSYVLYGPAGAISELYND 170
           TL+IKG+EG++VG+FSKG  NY +IL+GTVLGG +MVLGYVSV+YVLYGP GA++E YND
Sbjct: 62  TLVIKGTEGVIVGWFSKGTTNYGRILLGTVLGGIVMVLGYVSVAYVLYGPGGAVAEFYND 121

Query: 171 TVQAVSGIVIGGGLGYILKKRLG 193
            VQAVSGI+IGGGLGYILKKR+G
Sbjct: 122 IVQAVSGIIIGGGLGYILKKRIG 144


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.145    0.414 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70296858
Number of Sequences: 2977
Number of extensions: 2943004
Number of successful extensions: 11572
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11569
Number of HSP's gapped (non-prelim): 3
length of query: 199
length of database: 189,106,746
effective HSP length: 53
effective length of query: 146
effective length of database: 157,386,935
effective search space: 22978492510
effective search space used: 22978492510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)