BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2093 374280 373813 -156 !not a gene!
         (156 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71194 hypothetical protein PH1828 - Pyrococcus horikoshii ...   132  1e-30

>pir||D71194 hypothetical protein PH1828 - Pyrococcus horikoshii
           >gi|3258264|dbj|BAA30947.1| (AP000007) 115aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 115
           
 Score =  132 bits (330), Expect = 1e-30
 Identities = 70/113 (61%), Positives = 82/113 (71%)

Query: 44  PVTSANLLASLMRVSKVGFAKRFSNDFCPSTFIFSTTSLSKTSRVLNLPREIVNTLKPST 103
           PV++A L AS + VS +G   +FS+   P+ FIFSTTSLSKT  V + P EIV TL PST
Sbjct: 3   PVSTAKLRASFINVSGLGSLSKFSSACFPAIFIFSTTSLSKTFLVSSFPIEIVRTLNPST 62

Query: 104 IKLSTMATPGPPSFILTSTPPANWATISPNPPLFKTSASWATFAADNKVLLNL 156
             LST ATPGPPSFIL S PPANWATISP+PPL+ TSASWA   A+ +V  NL
Sbjct: 63  SILSTTATPGPPSFILISIPPANWATISPSPPLWITSASWAILEAERRVPPNL 115


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.129    0.374 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51858715
Number of Sequences: 2977
Number of extensions: 1845850
Number of successful extensions: 6842
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6841
Number of HSP's gapped (non-prelim): 1
length of query: 156
length of database: 189,106,746
effective HSP length: 57
effective length of query: 99
effective length of database: 154,992,987
effective search space: 15344305713
effective search space used: 15344305713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)