BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2097 (PAB2097) DE:Hypothetical protein
(188 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75152 hypothetical protein PAB2097 - Pyrococcus abyssi (st... 389 e-107
pir||D71193 hypothetical protein PH1820 - Pyrococcus horikoshii ... 323 1e-87
sp|Q57729|Y281_METJA HYPOTHETICAL PROTEIN MJ0281 >gi|2128212|pir... 148 4e-35
pir||H70341 conserved hypothetical protein aq_459 - Aquifex aeol... 116 2e-25
gb|AAK40989.1| Conserved hypothetical protein [Sulfolobus solfat... 112 3e-24
emb|CAB57614.1| (Y18930) homolog of MJ0281 [Sulfolobus solfatari... 112 3e-24
gi|11497942 conserved hypothetical protein [Archaeoglobus fulgid... 98 1e-19
pir||H72769 hypothetical protein APE0147 - Aeropyrum pernix (str... 89 5e-17
gb|AAG20648.1| (AE005134) Vng2610c [Halobacterium sp. NRC-1] 84 1e-15
>pir||C75152 hypothetical protein PAB2097 - Pyrococcus abyssi (strain Orsay)
>gi|5457808|emb|CAB49298.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 188
Score = 389 bits (989), Expect = e-107
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MMGMIIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLA 60
MMGMIIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLA
Sbjct: 1 MMGMIIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLA 60
Query: 61 RYFLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGN 120
RYFLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGN
Sbjct: 61 RYFLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGN 120
Query: 121 PPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLE 180
PPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLE
Sbjct: 121 PPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLE 180
Query: 181 KNLTRSYV 188
KNLTRSYV
Sbjct: 181 KNLTRSYV 188
>pir||D71193 hypothetical protein PH1820 - Pyrococcus horikoshii
>gi|3258256|dbj|BAA30939.1| (AP000007) 188aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 188
Score = 323 bits (818), Expect = 1e-87
Identities = 151/173 (87%), Positives = 162/173 (93%)
Query: 16 DVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLARYFLPVLSYIRKDFN 75
DVL+FLQN L GFYAKYGIEV+LVGGLSLSKF +AFD ER QFLAR+FLPVLSYI+KDFN
Sbjct: 16 DVLSFLQNFLGGFYAKYGIEVKLVGGLSLSKFYYAFDAERNQFLARHFLPVLSYIKKDFN 75
Query: 76 AKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGNPPDRKLLKERALKEA 135
A+AALG+VNVDIYE G NFIFGLAHPGL+VA++SLYRLYPEFYGNPPDRKLLKERALKE
Sbjct: 76 ARAALGIVNVDIYEPGFNFIFGLAHPGLKVAVVSLYRLYPEFYGNPPDRKLLKERALKEV 135
Query: 136 MHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLEKNLTRSYV 188
MHELGHVFGL HCPNPKCVMHFSNSIIDTDIKSWMYCE CLRKLEKNL RS+V
Sbjct: 136 MHELGHVFGLGHCPNPKCVMHFSNSIIDTDIKSWMYCESCLRKLEKNLARSHV 188
>sp|Q57729|Y281_METJA HYPOTHETICAL PROTEIN MJ0281 >gi|2128212|pir||B64335 hypothetical
protein MJ0281 - Methanococcus jannaschii
>gi|1591006|gb|AAB98269.1| (U67483) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 179
Score = 148 bits (370), Expect = 4e-35
Identities = 81/180 (45%), Positives = 109/180 (60%), Gaps = 11/180 (6%)
Query: 1 MMGMIIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLA 60
M+ I I P+G+V ++L FL+ + I ++ + +A++F R QF +
Sbjct: 3 MIMRICIQPVGDVNDEILKFLKKKFGEVFGMCEILPKIDIPI------YAYNFSRGQFNS 56
Query: 61 RYFLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGN 120
L L + LGV VDIY LNF+FG A + A+ISL RL PEFYG
Sbjct: 57 TLILKSLPTVED-----IVLGVTEVDIYADNLNFVFGEAELFGKRALISLARLRPEFYGL 111
Query: 121 PPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLE 180
PP++ +LK RALKEA+HE+GHV GL HC N +CVM FSNSIID D+K W YC+KCL+KL+
Sbjct: 112 PPNKDVLKIRALKEAIHEIGHVLGLIHCENKRCVMSFSNSIIDVDLKDWRYCKKCLKKLQ 171
>pir||H70341 conserved hypothetical protein aq_459 - Aquifex aeolicus
>gi|2983128|gb|AAC06732.1| (AE000691) hypothetical
protein [Aquifex aeolicus]
Length = 174
Score = 116 bits (288), Expect = 2e-25
Identities = 73/180 (40%), Positives = 101/180 (55%), Gaps = 14/180 (7%)
Query: 2 MGMIIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLAR 61
MG I IV G+V +L +++ + +EVR+ + + A++ +R Q+ A
Sbjct: 1 MGYIYIVSFGDVEDRLLLADASNVKEIF---DLEVRV--STVKADIEEAYNPQRNQYHAG 55
Query: 62 YFLPVLS-YIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGN 120
L LS + D AL V+ D+YE GLNF+FG A G + A++S YRLY
Sbjct: 56 TILSYLSRVVYPDMVRLVAL--VSFDLYEEGLNFVFGEAQYGGKYAVVSTYRLYH----- 108
Query: 121 PPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLE 180
PD ++ ER KE HELGH FGL+HCP+P CVM FSNSI + D KS +C C RKL+
Sbjct: 109 -PDERVFFERVFKETNHELGHTFGLKHCPDPYCVMSFSNSIDEVDRKSRDFCPNCRRKLD 167
>gb|AAK40989.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 183
Score = 112 bits (277), Expect = 3e-24
Identities = 70/179 (39%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 5 IIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQ--HAFDFERRQFLARY 62
I+IV + + ++ + N+LS YG+EV ++ L K+ AF++ER Q+ A
Sbjct: 6 ILIVTLTYIEKSIIDEIVNNLSS----YGLEVDIL--LDSRKYLPISAFNWERLQYDAEK 59
Query: 63 FLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGNPP 122
L L I DFN + + + + D Y G NF+FGL AII L+RL EFY P
Sbjct: 60 VLSFLKSIH-DFNYDSIIFLADSDGYIDGYNFVFGLTIDNF--AIIFLHRLREEFYNRKP 116
Query: 123 DRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLEK 181
D L +R +KE HE+GH GL HC CVM+FSNS+ D D K +C+ C K+EK
Sbjct: 117 DLDLFMKRVVKEVTHEVGHTLGLSHCNTTGCVMNFSNSVEDVDKKQAKFCKNCAHKIEK 175
>emb|CAB57614.1| (Y18930) homolog of MJ0281 [Sulfolobus solfataricus]
Length = 183
Score = 112 bits (277), Expect = 3e-24
Identities = 70/179 (39%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 5 IIIVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQ--HAFDFERRQFLARY 62
I+IV + + ++ + N+LS YG+EV ++ L K+ AF++ER Q+ A
Sbjct: 6 ILIVTLTYIEKSIIDEIVNNLSS----YGLEVDIL--LDSRKYLPISAFNWERLQYDAEK 59
Query: 63 FLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGNPP 122
L L I DFN + + + + D Y G NF+FGL AII L+RL EFY P
Sbjct: 60 VLSFLKSIH-DFNYDSIIFLADSDGYIDGYNFVFGLTIDNF--AIIFLHRLREEFYNRKP 116
Query: 123 DRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLRKLEK 181
D L +R +KE HE+GH GL HC CVM+FSNS+ D D K +C+ C K+EK
Sbjct: 117 DLDLFMKRVVKEVTHEVGHTLGLSHCNTTGCVMNFSNSVEDVDKKQAKFCKNCAHKIEK 175
>gi|11497942 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448031|pir||B69291 conserved hypothetical protein
AF0330 - Archaeoglobus fulgidus
>gi|2650307|gb|AAB90906.1| (AE001082) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 160
Score = 97.5 bits (239), Expect = 1e-19
Identities = 54/129 (41%), Positives = 75/129 (57%), Gaps = 13/129 (10%)
Query: 51 FDFERRQFLARYFLPVLSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISL 110
++ RRQ+ + L +L I K LGV DIY G+NF+FG A G A++S+
Sbjct: 43 YNASRRQYNSTCILRMLPPI------KVTLGVTGKDIYAKGMNFVFGEAELGGARAVLSV 96
Query: 111 YRLYPEFYGNPPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWM 170
+RL D +L +ER +KEA+HE+GHV GL+HC N CVM FSNS+ D D K
Sbjct: 97 FRL------TTADSELYRERVVKEAVHEIGHVLGLKHCSN-NCVMRFSNSVQDVDRKPVS 149
Query: 171 YCEKCLRKL 179
+C +C K+
Sbjct: 150 FCRECASKI 158
>pir||H72769 hypothetical protein APE0147 - Aeropyrum pernix (strain K1)
>gi|5103537|dbj|BAA79058.1| (AP000058) 154aa long
hypothetical protein [Aeropyrum pernix]
Length = 154
Score = 88.5 bits (216), Expect = 5e-17
Identities = 52/132 (39%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 50 AFDFERRQFLARYFLPVLSYIRKDFNAKAA--LGVVNVDIYELGLNFIFGLAHPGLRVAI 107
A+ +ER QF A + + D+ + +GVV+ D Y G NF+FGLA L VA
Sbjct: 20 AYSWERMQFDAEKVNEHIHSVLYDYVREGIRIIGVVDADGYIPGFNFVFGLASTALGVAT 79
Query: 108 ISLYRLYPEFYGNPPDRKLLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIK 167
+ RL G L ER LKE +HE GH+ GL+HC N +CVM FS S+ + D K
Sbjct: 80 VYTRRLKTGGNG------LYTERLLKEVLHEAGHLLGLDHCSNRECVMSFSRSVEEVDRK 133
Query: 168 SWMYCEKCLRKL 179
+ ++C C KL
Sbjct: 134 APLFCSSCKAKL 145
>gb|AAG20648.1| (AE005134) Vng2610c [Halobacterium sp. NRC-1]
Length = 173
Score = 83.9 bits (204), Expect = 1e-15
Identities = 53/174 (30%), Positives = 82/174 (46%), Gaps = 11/174 (6%)
Query: 7 IVPIGEVPGDVLAFLQNSLSGFYAKYGIEVRLVGGLSLSKFQHAFDFERRQFLARYFLPV 66
IVP+G+VP V +SL Y + +V A+D R Q+ A F+
Sbjct: 5 IVPVGDVPAHVKRQASSSLRSVY-----DCEVVVASEQDVPTAAYDEARSQYRAAEFIDT 59
Query: 67 LSYIRKDFNAKAALGVVNVDIYELGLNFIFGLAHPGLRVAIISLYRLYPEFYGNPPDRK- 125
+ + + + + D++ N++FGLA+ R ++S YRL G +R
Sbjct: 60 AT---RATSGDKTIAITPHDLFYRRRNYVFGLAYLDGRGCVVSTYRLQTSSDGGFSNRSS 116
Query: 126 --LLKERALKEAMHELGHVFGLEHCPNPKCVMHFSNSIIDTDIKSWMYCEKCLR 177
+ +R KE +HELGH GLEHC N +C M+FS ++ + D K C C R
Sbjct: 117 SDVFDDRVRKEVVHELGHTLGLEHCDNNRCAMNFSPTVREVDRKEENLCGSCQR 170
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.146 0.446
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72545540
Number of Sequences: 2977
Number of extensions: 2961114
Number of successful extensions: 8232
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8217
Number of HSP's gapped (non-prelim): 9
length of query: 188
length of database: 189,106,746
effective HSP length: 49
effective length of query: 139
effective length of database: 159,780,883
effective search space: 22209542737
effective search space used: 22209542737
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)