BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2101 364995 364543 -151 !not a gene!
         (151 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71192 hypothetical protein PH1814 - Pyrococcus horikoshii ...   186  1e-46

>pir||F71192 hypothetical protein PH1814 - Pyrococcus horikoshii
           >gi|3258250|dbj|BAA30933.1| (AP000007) 109aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 109
           
 Score =  186 bits (467), Expect = 1e-46
 Identities = 91/109 (83%), Positives = 99/109 (90%)

Query: 1   MITPTMKTIVENISNLPTHIKVIRRTFISGGKRGEVIPTLNPTFPIADALSNRASANFAP 60
           M TPTMKTIV NIS+LPTH++VIRR FISGG+RGEVIPTLNPTFPIADALSN+ASAN AP
Sbjct: 1   MRTPTMKTIVGNISSLPTHMRVIRRIFISGGRRGEVIPTLNPTFPIADALSNKASANLAP 60

Query: 61  SLSIMYMVPKSRKAKYVIVNPRTSWISSSENSYSPTFLLIIAPLGSIAC 109
            LSI+YMVPKS+ AKYVIV P TSWISSSENSYSPTFLL+ AP GSIAC
Sbjct: 61  ILSIIYMVPKSKNAKYVIVKPNTSWISSSENSYSPTFLLMTAPFGSIAC 109


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.134    0.384 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46622153
Number of Sequences: 2977
Number of extensions: 1624045
Number of successful extensions: 3283
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3282
Number of HSP's gapped (non-prelim): 1
length of query: 151
length of database: 189,106,746
effective HSP length: 55
effective length of query: 96
effective length of database: 156,189,961
effective search space: 14994236256
effective search space used: 14994236256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)