BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2104 (PAB2104) DE:Hypothetical protein
(316 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75151 hypothetical protein PAB2104 - Pyrococcus abyssi (st... 609 e-173
pir||H71191 hypothetical protein PH1808 - Pyrococcus horikoshii ... 496 e-139
pir||D69229 conserved hypothetical protein MTH967 - Methanobacte... 196 3e-49
pir||C64445 conserved hypothetical protein MJ1164 - Methanococcu... 195 5e-49
gi|11499376 conserved hypothetical protein [Archaeoglobus fulgid... 180 2e-44
gb|AAG20253.1| (AE005100) Vng2112c [Halobacterium sp. NRC-1] 162 6e-39
emb|CAC12484.1| (AL445067) conserved hypothetical protein [Therm... 133 2e-30
gb|AAK41218.1| Conserved hypothetical protein [Sulfolobus solfat... 101 1e-20
pir||D72669 hypothetical protein APE0778 - Aeropyrum pernix (str... 86 4e-16
>pir||B75151 hypothetical protein PAB2104 - Pyrococcus abyssi (strain Orsay)
>gi|5457799|emb|CAB49289.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 316
Score = 609 bits (1554), Expect = e-173
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MEREEFVEFVERILRRIGFKTLKLNFRGGCFNLVATRSLLLLFIKALANIDKFSEEQAED 60
MEREEFVEFVERILRRIGFKTLKLNFRGGCFNLVATRSLLLLFIKALANIDKFSEEQAED
Sbjct: 1 MEREEFVEFVERILRRIGFKTLKLNFRGGCFNLVATRSLLLLFIKALANIDKFSEEQAED 60
Query: 61 LKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEGEPPLIMAERG 120
LKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEGEPPLIMAERG
Sbjct: 61 LKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEGEPPLIMAERG 120
Query: 121 GFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDE 180
GFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDE
Sbjct: 121 GFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDE 180
Query: 181 ALVKPINVLKAKFDEISLSSKPETTLEREVFERLERIGMEVVKVKTAPFNAITTEEEDNI 240
ALVKPINVLKAKFDEISLSSKPETTLEREVFERLERIGMEVVKVKTAPFNAITTEEEDNI
Sbjct: 181 ALVKPINVLKAKFDEISLSSKPETTLEREVFERLERIGMEVVKVKTAPFNAITTEEEDNI 240
Query: 241 ELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRARIEVVNKVPILPTRVLEEVRD 300
ELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRARIEVVNKVPILPTRVLEEVRD
Sbjct: 241 ELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRARIEVVNKVPILPTRVLEEVRD 300
Query: 301 ADELLEIINELKEAKS 316
ADELLEIINELKEAKS
Sbjct: 301 ADELLEIINELKEAKS 316
>pir||H71191 hypothetical protein PH1808 - Pyrococcus horikoshii
>gi|3258244|dbj|BAA30927.1| (AP000007) 380aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 380
Score = 496 bits (1263), Expect = e-139
Identities = 241/312 (77%), Positives = 290/312 (92%)
Query: 1 MEREEFVEFVERILRRIGFKTLKLNFRGGCFNLVATRSLLLLFIKALANIDKFSEEQAED 60
MER E V FVE IL+RIGF+T+KL FRGGCF+LVATR LLLLFIKALANIDKFSEEQAED
Sbjct: 66 MERNELVNFVEGILKRIGFRTMKLEFRGGCFDLVATRQLLLLFIKALANIDKFSEEQAED 125
Query: 61 LKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEGEPPLIMAERG 120
LK+LAKLFKASP+LVGLR+KN E+EDG+VYERFGIYA+TPGTLYSMFAEGEPPLI+AERG
Sbjct: 126 LKKLAKLFKASPLLVGLRSKNAELEDGVVYERFGIYAITPGTLYSMFAEGEPPLIIAERG 185
Query: 121 GFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDE 180
GFYVRIDGK+LK LRE+HGYS++ELA ILG+SRKSLQRYEKG+S+V+LEVALRLEEVFDE
Sbjct: 186 GFYVRIDGKKLKALREEHGYSITELAGILGISRKSLQRYEKGESVVSLEVALRLEEVFDE 245
Query: 181 ALVKPINVLKAKFDEISLSSKPETTLEREVFERLERIGMEVVKVKTAPFNAITTEEEDNI 240
LVKPI+VL+A+ +++L+S+P+ LE+EVFE+L ++GM VVK+KTAPFNAIT EEED+I
Sbjct: 246 PLVKPIDVLRARLKDVTLTSEPDNILEKEVFEKLRKLGMSVVKIKTAPFNAITKEEEDDI 305
Query: 241 ELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRARIEVVNKVPILPTRVLEEVRD 300
ELLTGIDE+KT +TL+RAELVSQMAE+VGS+G+FV+K+AR+EVV VPILP ++LEE++D
Sbjct: 306 ELLTGIDERKTGRTLKRAELVSQMAEVVGSDGVFVVKKARMEVVRNVPILPKKLLEEIKD 365
Query: 301 ADELLEIINELK 312
ADELLE+I +LK
Sbjct: 366 ADELLELIRDLK 377
>pir||D69229 conserved hypothetical protein MTH967 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622065|gb|AAB85463.1| (AE000870) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 311
Score = 196 bits (493), Expect = 3e-49
Identities = 110/314 (35%), Positives = 189/314 (60%), Gaps = 12/314 (3%)
Query: 1 MEREEFVEFVERILRRIGFKTLKLNFRGGCFNLVATRSLLLLFIKALANIDKFSEEQAED 60
++RE + + +L GF+T + + CF+L+A R LLLL +K L NID + QA +
Sbjct: 5 IKREHVLREIHELLASNGFETSHI-YERSCFDLMARRKLLLLLLKVLVNIDGINSLQAHE 63
Query: 61 LKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEGEPPLIMAERG 120
++ LA F ASPI+VG+R+K +++ +VYER GI AV P T +M A+GE P I+A+RG
Sbjct: 64 IRTLAHTFLASPIIVGVRSKTEPLKEDVVYERHGIPAVAPETFRNMVADGEYPEIIADRG 123
Query: 121 GFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDE 180
G+YV IDGK L+++RE++ SL +LA++ VSRK++ +YE G + + E A+ LEE+ +
Sbjct: 124 GYYVHIDGKTLREVREEYNLSLKDLADLAHVSRKTIYKYENGLARASAETAMILEEILNI 183
Query: 181 ALVKPINVLKAKFDEISLSSKPETTLEREVFERLERIGMEVVKVKTAPFNAITTEEEDNI 240
+ I++ D + KP RL IG +++ PF+A+ E + +
Sbjct: 184 RITLSIDIFSVP-DRDEIEIKPS--------GRLADIGFGMIETHKTPFDAVAKEIKFDN 234
Query: 241 ELLTGIDEKKTEKTLRR-AELVSQMAEIVGSEGMFVLKRARI-EVVNKVPILPTRVLEEV 298
++T +++++ +TLRR A + ++ + GSE +F++ RI E + +P++ + + E+
Sbjct: 235 TVITNLEKERDSRTLRRMAVPLKDLSLVSGSESVFIIDNPRINENIEGIPVIKSWEIGEM 294
Query: 299 RDADELLEIINELK 312
+ E L++I E K
Sbjct: 295 ESSREFLKVIAERK 308
>pir||C64445 conserved hypothetical protein MJ1164 - Methanococcus jannaschii
>gi|1591790|gb|AAB99166.1| (U67558) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 318
Score = 195 bits (491), Expect = 5e-49
Identities = 106/287 (36%), Positives = 180/287 (61%), Gaps = 10/287 (3%)
Query: 30 CFNLVATRSLLLLFIKALANIDKFSEEQAEDLKRLAKLFKASPILVGLRTKNYEMEDGIV 89
CF++VA++ + L +K L NID S +Q+++LK+++K+ +P+++G+RT+N ME G+V
Sbjct: 31 CFDMVASKEDIRLILKILKNIDSLSRDQSKELKKISKILHGTPLIIGIRTRNAPMEHGVV 90
Query: 90 YERFGIYAVTPGTLYSMFAEGEPPLIMAERGGFYVRIDGKRLKDLREKHGYSLSELANIL 149
Y+R+ I AVT T + + EG PP++ A RGGF+V+IDGK LK++RE G S+ +LA +
Sbjct: 91 YDRYNIKAVTFET-FRDYLEGSPPMVYANRGGFFVKIDGKVLKEVREAMGISVGKLAEVA 149
Query: 150 GVSRKSLQRYEKGDSMVTLEVALRLEEVFDEALVKPINVLKAKFDEISLSSKPET--TLE 207
GVSRK++ +YE + +++VAL++EE D LVK I++ + DE + +K E +
Sbjct: 150 GVSRKAIYKYETQMANPSVDVALKIEEFLDVPLVKGIDLFEPVDDE-DVENKLENLEDFK 208
Query: 208 REVFERLERIGMEVVKVKTAPFNAITTEEEDN--IELLTGIDEKKTEKTLRRAELVSQMA 265
+E L +G + V+ APF+A+ ++ DN LLT I+EK E+ R+A V +++
Sbjct: 209 KEAINFLNELGFKSFVVEKAPFDAVAEKDMDNNLNILLTNIEEKDNEEVKRKALFVRELS 268
Query: 266 EIVGSEGMFVLKRARIEVVNKVPILPTRVLEEVRDADELLEIINELK 312
++ + +L+ E N LP +EE++ D+ LE+I +K
Sbjct: 269 RLLDGYSLLILEEKEKEYKN----LPVVSIEELKKMDDALELIEHIK 311
>gi|11499376 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450594|pir||B69473 conserved hypothetical protein
AF1787 - Archaeoglobus fulgidus
>gi|2648758|gb|AAB89460.1| (AE000979) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 309
Score = 180 bits (451), Expect = 2e-44
Identities = 101/306 (33%), Positives = 180/306 (58%), Gaps = 9/306 (2%)
Query: 7 VEFVERILRRIGFKTLKL-NFRGGCFNLVATRSLLLLFIKALANIDKFSEEQAEDLKRLA 65
+E V +IL++ F L + CF++VA + ++L IK L N+D E AE++K+L
Sbjct: 6 IESVVKILQKAEFSVADLAETKPRCFDIVARKDDVVLLIKVLYNVDSLKPEAAEEMKKLT 65
Query: 66 KLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEGEPPLIMAERGGFYVR 125
K+ +ASPI++G R K +E G+VY R+G+ + T Y EG P + + GG+YV+
Sbjct: 66 KILQASPIVIGERFKFDFLERGVVYTRYGLPVINLATFYDFIVEGIYPYVYSAPGGYYVK 125
Query: 126 IDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEEVFDEALVKP 185
+D +R+++ RE+ G S+ ++A +LGVSR+++++YE+G TL A ++EE+ +K
Sbjct: 126 LDSERIREARERLGLSVGDMAKMLGVSRRTVKKYEEGTD-TTLSTAAKIEEIIGTFAIKE 184
Query: 186 INVLKAKFDEISLSSKPETTLER-EVFERLERIGMEVVKVKTAPFNAITTEEEDNIELLT 244
I++L F E +S + E E E+ E+L IG+ V V+ APF+A++ +ED ++LT
Sbjct: 185 IDLL--NFVEADISEEEEVEGEEGEIIEQLRVIGLSVYPVRQAPFDAVSQAKED--QILT 240
Query: 245 GIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRARIEVVNKVPILPTRVLEEVRDADEL 304
G K+ + +RA L+ +++E + +E ++ +A + V V + L V A +
Sbjct: 241 GF--KQVREIEKRARLLGRISEAIDAEAAYITDKACKKKVESVVFVLKEELYSVSSAKDF 298
Query: 305 LEIINE 310
+ ++ E
Sbjct: 299 ISLLKE 304
>gb|AAG20253.1| (AE005100) Vng2112c [Halobacterium sp. NRC-1]
Length = 276
Score = 162 bits (405), Expect = 6e-39
Identities = 96/278 (34%), Positives = 153/278 (54%), Gaps = 9/278 (3%)
Query: 44 IKALANIDKFSEEQAEDLKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTL 103
+K L NID F E +++RL A+P++VGLRT++ +++ G+VY R G+ P T
Sbjct: 1 MKVLVNIDAFDAETGAEMRRLGTYLHATPLVVGLRTRDEDLDPGVVYFRHGVPVFNPDTA 60
Query: 104 YSMFAEGEPPLIMAERGGFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGD 163
+F +G PPL+ A GG YV IDG L D RE SL +LA+ LGVSR+++ +YE G
Sbjct: 61 MELFVDGIPPLVYAAPGGLYVNIDGDVLADRREDERLSLGQLASELGVSRRTVSKYEDGM 120
Query: 164 SMVTLEVALRLEEVFDEALVKPINVLKAKFDEISLSSKPE----TTLEREVFERLERIGM 219
+ ++EVA+RLE++F L P++V+ D P+ + V L R+G
Sbjct: 121 N-ASIEVAMRLEDLFGGELTAPVDVMDGAEDVRDTDPTPDDPEAAPEDVPVLSVLARVGF 179
Query: 220 EVVKVKTAPFNAITTEEEDNIELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRA 279
EV APF A+ + LLTG TE ++RA ++S + E+ + ++V+ A
Sbjct: 180 EVHPTVQAPFKAVGEAGAGHDRLLTG-HSAFTEAAVKRARIMSSVGEVTHTRAVYVVDEA 238
Query: 280 RIEVVNKVPILPTRVLEEVRDADELLEII---NELKEA 314
E V+ I+ L V D+++L +++ +L+EA
Sbjct: 239 GRESVDDTAIVEREELANVDDSEDLRDLLADRGDLQEA 276
>emb|CAC12484.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 312
Score = 133 bits (332), Expect = 2e-30
Identities = 80/281 (28%), Positives = 153/281 (53%), Gaps = 6/281 (2%)
Query: 31 FNLVATRSLLLLFIKALANIDKFSEEQAEDLKRLAKLFKASPILVGLRTKNYEMEDGIVY 90
F+++A R++ +K L NID A L ++AK +++ +VG + +EDG++Y
Sbjct: 34 FDIIARRNIERYVLKVLYNIDTLKPTTAYQLAKVAKFLRSTATIVGEKAGGGPLEDGVIY 93
Query: 91 ERFGIYAVTPGTLYSMFAEGEPPLIMAERGGFYVRIDGKRLKDLREKHGYSLSELANILG 150
R GI + T + + GE P I + GGFYV+I+G+ L+++R K S+ L++ LG
Sbjct: 94 YRHGIPISSLDT-FRDYINGEKPYIYSGPGGFYVKINGEALREMRMKMSLSIGYLSHYLG 152
Query: 151 VSRKSLQRYEKGDSMVTLEVALRLEEVFDEALVKPINVLKAKFDEISLSSKPETTLEREV 210
VSR+S+ YE G S T++V L+L+E+ LV ++ K D + + + +
Sbjct: 153 VSRRSVSLYENGSS-ATIDVFLKLQEIIKSDLVDHTDLFKIIPDNFQEEERVDDVYIQML 211
Query: 211 FERLERIGMEVVKVKTAPFNAITTEEEDNIELLTGIDEKKTEKTLRRAELVSQMAEIVGS 270
+ LERIG++ PF+ I +E+ + L+ + ++ +KT + E++ +++ ++
Sbjct: 212 LDILERIGLDTKPAYRMPFD-ILARDEEVVSLIASLLSEEADKT--KIEIMKKISSVLED 268
Query: 271 EGMFVLKRARI-EVVNKVPILPTRVLEEVRDADELLEIINE 310
+ + K + E +N P++ LE++ DELL ++ +
Sbjct: 269 DAFLISKHSTTRENINGCPVINIVDLEKMTSKDELLRMLEK 309
>gb|AAK41218.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 310
Score = 101 bits (249), Expect = 1e-20
Identities = 70/266 (26%), Positives = 143/266 (53%), Gaps = 16/266 (6%)
Query: 51 DKFSEEQAEDLKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTPGTLYSMFAEG 110
DK ++E+ DLK++A S + L N E ED + + ++A++P + G
Sbjct: 50 DKITKEEISDLKKIA----VSTLTASLVVTNEEEEDIVSVKADNVFAISPEG-FKKVING 104
Query: 111 EPPLIMAERGGFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEV 170
E + RGG +++I LK RE+ GYS+ ++A LGVSRK++ YEKGDS V+LEV
Sbjct: 105 EKIFLYRTRGGIFIKIRNYILKHKREEMGYSIGDVAKFLGVSRKAIYDYEKGDSDVSLEV 164
Query: 171 ALRLEEVFDEALVKPI--NVLKAKFD--EISLSSKPETTLEREVFERLERIGMEVVKVKT 226
A +L ++F + ++ + + +K+K + E ++ + ++ +L+ G+ + +K
Sbjct: 165 AEKLIDLFGDDIIGDVIWDSIKSKKEILEEGVAEFSPENFKAKLIYKLKESGLNALSLKL 224
Query: 227 APFNAITTEEEDNIELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGMFVLKRARIEVVNK 286
+ I + ++N L+T I+ K K++++ ++A SE + +++ ++ ++ +
Sbjct: 225 TAADLIVKDSDNNRYLVT-IENKDYNKSMKKFYEAKKLASYTKSELVIIIRTSK--MLKE 281
Query: 287 VPILPTRVLEEVRDADELLEIINELK 312
L + EE +++ +I+E+K
Sbjct: 282 CEDLGYKTYEE----NDIHSLIDEIK 303
>pir||D72669 hypothetical protein APE0778 - Aeropyrum pernix (strain K1)
>gi|5104441|dbj|BAA79756.1| (AP000060) 329aa long
hypothetical protein [Aeropyrum pernix]
Length = 329
Score = 86.2 bits (210), Expect = 4e-16
Identities = 68/282 (24%), Positives = 135/282 (47%), Gaps = 17/282 (6%)
Query: 41 LLFIKALANIDKFSEEQAEDLKRLAKLFKASPILVGLRTKNYEMEDGIVYERFGIYAVTP 100
++ IKA+ + S+++ E+L +A S +++ R ++ G+VY+R+G+ V
Sbjct: 52 VVLIKAIYDASLISKKEVEELSAVANSLGVSAVIIAERMGREDLLTGVVYDRYGVNMVNL 111
Query: 101 GTLYSMFAEGEPPLIMAERGGFYVRIDGKRLKDLREKHGYSLSELANILGVSRKSLQRYE 160
T + + E + + + V I ++L++ R + G SL LA +L SRKS+ YE
Sbjct: 112 ETFENFVSGREEVYVTRYKDIYTVSISSEKLREKRLEKGLSLGHLAYMLKTSRKSIYEYE 171
Query: 161 KGDSMVTLEVALRLEEVFDEALVKPINVLKAKFDEISLS--SKPETTLEREVFERLERIG 218
+G ++E A +L ++ E +++PI++L + +S KPE L V E+L +G
Sbjct: 172 RGVMSPSVEKAEKLVDILGEEILEPIDILTSPRKPVSKRDFDKPEEAL---VGEKLLELG 228
Query: 219 MEVVKVKTAPFNAIT--TEEE---DNIELLTGIDEKKTEKTLRRAELVSQMAEIVGSEGM 273
+V K + + + EE I ++ + E+ + R +M I+ S
Sbjct: 229 FKVSHAKRTVVDLVAGRSGEEGVGSRIMIVVKRSREGRERMMSRIMKGVKMGSILSSSLY 288
Query: 274 FVLKRARIEVVNKVPILPTRVLEEVRDADELLEIINELKEAK 315
V+ R ++ + T ++++VR E IN++ +
Sbjct: 289 AVVNREEKSLIKDIDYTKT-IVKDVR------EFINDVSRGR 323
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.367
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102917227
Number of Sequences: 2977
Number of extensions: 4094824
Number of successful extensions: 12558
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12539
Number of HSP's gapped (non-prelim): 9
length of query: 316
length of database: 189,106,746
effective HSP length: 61
effective length of query: 255
effective length of database: 152,599,039
effective search space: 38912754945
effective search space used: 38912754945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)