BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2107 (tip49) DE:TBP-interacting protein TIP49
         (441 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75150 tbp-interacting protein tip49 PAB2107 - Pyrococcus a...   859  0.0
pir||D71191 hypothetical protein PH1804 - Pyrococcus horikoshii ...   836  0.0
gi|11499401 TBP-interacting protein TIP49 [Archaeoglobus fulgidu...   494  e-138
gb|AAK42590.1| TATA binding protein (TBP)-interacting protein (T...   483  e-135
pir||E72723 probable TATA-binding protein-interracing protein 49...   454  e-126
dbj|BAB08471.1| (AB013390) RuvB DNA helicase-like protein [Arabi...   400  e-110
pir||T40697 probable tata binding protein-interacting protein - ...   397  e-109
gi|9790083 Pontin 52 [Mus musculus] >gi|7449960|pir||JC5521 TATA...   395  e-109
gi|4506753 TATA binding protein interacting protein 49 kDa [Homo...   394  e-109
gi|6755382 RuvB-like protein 2 [Mus musculus] >gi|4521249|dbj|BA...   391  e-108
gi|5730023 RuvB (E coli homolog)-like 2 [Homo sapiens] >gi|11427...   391  e-108
pir||T46049 RuvB DNA helicase-like protein - Arabidopsis thalian...   390  e-107
pir||T32710 hypothetical protein T22D1.10 - Caenorhabditis elega...   380  e-104
gb|AAF43412.1|AF233279_1 (AF233279) reptin [Drosophila melanogas...   379  e-104
emb|CAB76908.1| (AJ276264) putative Ruv DNA-helicase [Cicer arie...   376  e-103
dbj|BAB08331.1| (AB007651) Ruv DNA-helicase-like protein [Arabid...   374  e-102
gb|AAD34041.1|AF151804_1 (AF151804) CGI-46 protein [Homo sapiens]     370  e-101
gi|6320396 RUVB-like protein; Rvb1p [Saccharomyces cerevisiae] >...   369  e-101
gi|6325021 RUVB-like protein; Rvb2p [Saccharomyces cerevisiae] >...   367  e-100
gb|AAF54514.1| (AE003686) pontin gene product [alt 2] [Drosophil...   365  e-100
gb|AAF43411.1|AF233278_1 (AF233278) pontin [Drosophila melanogas...   361  1e-98
gb|AAF54515.1| (AE003686) pontin gene product [alt 1] [Drosophil...   307  2e-82
pir||T19534 hypothetical protein C27H6.2 - Caenorhabditis elegan...   302  4e-81
pir||T46873 hypothetical protein [imported] - Sulfolobus solfata...   155  9e-37
gi|11432495 RuvB (E coli homolog)-like 1 [Homo sapiens]               153  3e-36
emb|CAC02848.1| (AL390114) probable erythrocyte cytosolic protei...   126  5e-28

>pir||F75150 tbp-interacting protein tip49 PAB2107 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457795|emb|CAB49285.1| (AJ248284)
           TBP-interacting protein TIP49 [Pyrococcus abyssi]
           Length = 441
           
 Score =  859 bits (2194), Expect = 0.0
 Identities = 441/441 (100%), Positives = 441/441 (100%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK
Sbjct: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI
Sbjct: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL
Sbjct: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180

Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL 240
           LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL
Sbjct: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL 240

Query: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300
           DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE
Sbjct: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300

Query: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI 360
           AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI
Sbjct: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI 360

Query: 361 REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK 420
           REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK
Sbjct: 361 REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK 420

Query: 421 EYFADVKRSIAFVEKLEGMLK 441
           EYFADVKRSIAFVEKLEGMLK
Sbjct: 421 EYFADVKRSIAFVEKLEGMLK 441


>pir||D71191 hypothetical protein PH1804 - Pyrococcus horikoshii
           >gi|3258240|dbj|BAA30923.1| (AP000007) 441aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 441
           
 Score =  836 bits (2135), Expect = 0.0
 Identities = 418/441 (94%), Positives = 439/441 (98%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           MAVIEELP IKFERVGAHSHI+GLGLDENGKAKFIGDGMVGQ+KAREAAGIAVKLIKQGK
Sbjct: 1   MAVIEELPAIKFERVGAHSHIKGLGLDENGKAKFIGDGMVGQVKAREAAGIAVKLIKQGK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI
Sbjct: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           GVRISEERKVYEGMVEKME+R+TRHPFNPYIE+PES+ ITLKTKDDKKTIRAGREIAYQL
Sbjct: 121 GVRISEERKVYEGMVEKMEIRKTRHPFNPYIEIPESIRITLKTKDDKKTIRAGREIAYQL 180

Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL 240
           L++G+EEGDVIQIDAETGRVS+IGTTKEEEGLFF+KKVELP+GPVLKIKEFTYTVTLHDL
Sbjct: 181 LDMGVEEGDVIQIDAETGRVSKIGTTKEEEGLFFKKKVELPTGPVLKIKEFTYTVTLHDL 240

Query: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300
           DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE
Sbjct: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300

Query: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI 360
           AFSFLARAMENELAPILILATNRGMTKIRGTD+EAPHGIP+DMLDRLLIINTEPYKK+EI
Sbjct: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDIEAPHGIPVDMLDRLLIINTEPYKKDEI 360

Query: 361 REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK 420
           REIIKIRAKEEK+ELSEEALEYLA+LGEKTSLRYAVQLLAPASIIAGGKRVE+EHVEKA+
Sbjct: 361 REIIKIRAKEEKVELSEEALEYLADLGEKTSLRYAVQLLAPASIIAGGKRVEKEHVEKAR 420

Query: 421 EYFADVKRSIAFVEKLEGMLK 441
           EYFAD+KRSI+FVEKLEGMLK
Sbjct: 421 EYFADIKRSISFVEKLEGMLK 441


>gi|11499401 TBP-interacting protein TIP49 [Archaeoglobus fulgidus]
           >gi|7449962|pir||D69476 TBP-interacting protein TIP49
           homolog - Archaeoglobus fulgidus
           >gi|2648730|gb|AAB89434.1| (AE000977) TBP-interacting
           protein TIP49 [Archaeoglobus fulgidus]
           Length = 449
           
 Score =  494 bits (1257), Expect = e-138
 Identities = 257/435 (59%), Positives = 326/435 (74%), Gaps = 6/435 (1%)

Query: 9   TIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILL 68
           T  FER+ AHSHIRGLGLDEN +AK + DG+VGQ +AREAAG+ V+LIK GK+AG+GIL+
Sbjct: 9   TQTFERISAHSHIRGLGLDENLRAKDVADGLVGQKRAREAAGVIVRLIKSGKMAGRGILM 68

Query: 69  VGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEER 128
            GP G+GKTAIA+ I++ELG+D+PFVQ+S SE YSAE+KKTE L QA+R+AIGVRI E R
Sbjct: 69  AGPPGTGKTAIAVAISKELGKDIPFVQVSASEFYSAEMKKTEALIQAMRKAIGVRIRETR 128

Query: 129 KVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEG 188
            V EG V  ++     +P+NP  ++PES  +TL TKD+K+T   G  +A Q    GIE G
Sbjct: 129 TVLEGEVVGLDYNMVPNPYNPTQKIPESATLTLATKDEKRTFSVGGRLAMQFFTQGIEVG 188

Query: 189 DVIQIDAETGRVSRIGTT---KEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           DVI ID ETGR+ ++G +   K++  L   + V +PSG V K KEFTY VTLHDLD  NA
Sbjct: 189 DVIVIDKETGRIGKLGRSEKAKKKYDLGDDEVVPVPSGKVEKEKEFTYVVTLHDLDEANA 248

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R   IFSL      EI++E+RE VD+ VK+ +EEG+A LVPGVLFIDE H++DIE F+F+
Sbjct: 249 RRTSIFSLFSPPSREIDNEVREAVDEQVKRLVEEGRAELVPGVLFIDETHLMDIELFAFM 308

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RAME+E+API+ILA+NRG ++IRGTD+ APHGIPLD+LDRLLII TEPY +EEI+ II+
Sbjct: 309 NRAMESEMAPIIILASNRGFSRIRGTDIVAPHGIPLDLLDRLLIITTEPYSREEIKTIIE 368

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
           IRA E  I LS EA+E L ++GEKTSLRYAVQLLAPA   A      +VE E VE+A   
Sbjct: 369 IRAAESGIMLSNEAMEKLTDIGEKTSLRYAVQLLAPAYEFAKMRNSGKVELEDVERAASI 428

Query: 423 FADVKRSIAFVEKLE 437
           FADV +S A+++K E
Sbjct: 429 FADVSQSSAYLKKWE 443


>gb|AAK42590.1| TATA binding protein (TBP)-interacting protein (TIP49-like),
           putative [Sulfolobus solfataricus]
           Length = 476
           
 Score =  483 bits (1230), Expect = e-135
 Identities = 258/452 (57%), Positives = 330/452 (72%), Gaps = 14/452 (3%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           M+ I EL     E+   HSHI+GLGLD NGKAKFI DG+VGQ +AREAAG+ V+LIKQGK
Sbjct: 25  MSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIADGLVGQAEAREAAGVVVQLIKQGK 84

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           ++GKGIL VGP G+GKTA+A+ IARELGED PF  I+ SEIYS E+KKTE L Q +R++I
Sbjct: 85  MSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAINASEIYSTELKKTEILTQLIRKSI 144

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           GVRI E+R VYEG+V+  +++  R   NPY + P    ITL TKDD++T+  G EIA QL
Sbjct: 145 GVRIREKRLVYEGVVKDRKIKVARSRLNPYSQAPVEAQITLTTKDDERTLSVGEEIAQQL 204

Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEG-----LFFRKKVELPSGPVLKIKEFTYTV 235
           + LG+++GDVI IDA+TG+V   G  K  EG     +   K +E+P+GPV K KE T T+
Sbjct: 205 VSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYDIETTKVLEMPTGPVRKEKEITTTL 264

Query: 236 TLHDLDV----VNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFI 291
           TL+DLD+     N     IFS  F    EIN+++R+ VD+ VK WI +G+A LV GVLFI
Sbjct: 265 TLNDLDLNLAARNLAVTAIFS--FFTEREINEDVRKEVDRLVKDWINQGRAELVVGVLFI 322

Query: 292 DECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIIN 351
           D+ H LD+EAFSFL RA+E+ELAPILILATNRG+TKIRGTD+E+PHGIPLD+LDRLLII 
Sbjct: 323 DDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIRGTDIESPHGIPLDLLDRLLIIP 382

Query: 352 TEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR- 410
           T PY  +EI+EIIKIRA E +IEL  +ALE L ++G + SLRY+VQLL P+ IIA     
Sbjct: 383 TRPYNADEIKEIIKIRADELEIELDPQALEELTKIGVENSLRYSVQLLEPSLIIAQRNNR 442

Query: 411 --VEREHVEKAKEYFADVKRSIAFVEKLEGML 440
             ++ E V  A + F+DVKRS+ FV++ E +L
Sbjct: 443 SIIKVEDVVIASKLFSDVKRSVKFVKEYENLL 474


>pir||E72723 probable TATA-binding protein-interracing protein 49 APE0326 -
           Aeropyrum pernix (strain K1) >gi|5103965|dbj|BAA79281.1|
           (AP000059) 473aa long hypothetical TATA-binding
           protein-interracing protein 49 [Aeropyrum pernix]
           Length = 473
           
 Score =  454 bits (1155), Expect = e-126
 Identities = 232/432 (53%), Positives = 314/432 (71%), Gaps = 10/432 (2%)

Query: 18  HSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTGSGKT 77
           HSHI GLGLD +G+A+ IG G+VGQ +AREAAG+ V+++++G+L G+GIL+VGP G+GKT
Sbjct: 42  HSHITGLGLDADGRARKIGGGLVGQEEAREAAGVIVEMVREGRLGGRGILIVGPPGTGKT 101

Query: 78  AIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEGMVEK 137
           A+A+ IARELGED PFV ++  E++  +  K E L QA R+AIGVR+ E R+V EG+V  
Sbjct: 102 ALAIAIARELGEDTPFVALNAGELFRGDSGKLEMLLQAFRKAIGVRVRERREVVEGVVTS 161

Query: 138 MEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDVIQIDAET 197
           + V + R PF+PY  V     ITL+TKD+ +T   G E+A QL+ LG+  GDVI ID ET
Sbjct: 162 ISVSKRRTPFSPY-PVIAGARITLETKDESRTFTVGPEVAEQLVALGVRRGDVIVIDLET 220

Query: 198 GRVSRIGTTKEEEGLF---FRKKVELPSGPVLKIKEFTYTVTLHDLDVVNARAGGIFS-- 252
           G V  +G  K     F     ++VELP GPV K+KEF  T+TLHD+D   A     F+  
Sbjct: 221 GVVRVVGRGKGRGQSFDIDVVREVELPEGPVRKVKEFVRTLTLHDIDASIAAQRVAFTGL 280

Query: 253 -LIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFLARAMEN 311
             +F     +  E R++ D+ VK+W+ EGKA +V GV+FID+ H+LD+E+FSFL++AME+
Sbjct: 281 LSMFEAERGVTSEDRKKTDELVKKWVGEGKAEIVAGVIFIDDAHLLDMESFSFLSKAMES 340

Query: 312 ELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIKIRAKEE 371
           +LAPI++LATNRG+ KIRGTD+E+PHGIP D+LDRLLII T PY ++EI+EII+IRA EE
Sbjct: 341 DLAPIIVLATNRGVAKIRGTDIESPHGIPRDLLDRLLIITTRPYTRDEIKEIIRIRADEE 400

Query: 372 KIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEYFADVKR 428
           ++ LSE ALE LA++G + SLRYA+QLL PA I+A   G +RVE EHVE+A+  FAD+KR
Sbjct: 401 EVLLSENALERLADIGSEKSLRYAIQLLEPAMIVAKRRGSRRVEAEHVEEAERLFADIKR 460

Query: 429 SIAFVEKLEGML 440
           SI  VEK   ++
Sbjct: 461 SIQLVEKYRDLM 472


>dbj|BAB08471.1| (AB013390) RuvB DNA helicase-like protein [Arabidopsis thaliana]
           Length = 469
           
 Score =  400 bits (1018), Expect = e-110
 Identities = 205/431 (47%), Positives = 305/431 (70%), Gaps = 12/431 (2%)

Query: 11  KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
           + ER+GAHSHIRGLGLD   + + + +GMVGQ+KAR+AAG+ +++I++GK+AG+ IL+ G
Sbjct: 14  RVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGKIAGRAILIAG 73

Query: 71  PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
             G+GKTAIAMG+A+ LG + PF  I+GSEI+S E+ KTE L Q+ R+AIGVRI EE +V
Sbjct: 74  QPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRKAIGVRIKEETEV 133

Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
            EG V ++++ R   P +  +   +S  +T+KT D +     G ++   L +  ++ GDV
Sbjct: 134 IEGEVVEVQIDR---PASSGV-ASKSGKMTMKTTDMETVYDMGAKMIEALNKEKVQSGDV 189

Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           I ID  TG+++++G +    ++ + +  + K V+ P G + K KE  + VTLH++DV+N+
Sbjct: 190 IAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVTLHEIDVINS 249

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R  G  +L  G   EI  E+RE++D  V +W EEGKA +VPGVLFIDE HMLDIE FSFL
Sbjct: 250 RTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 309

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RA+ENE++PIL++ATNRG+T IRGT+ ++PHGIP+D+LDRLLII T+PY  ++IR+I++
Sbjct: 310 NRALENEMSPILVVATNRGVTTIRGTNQKSPHGIPIDLLDRLLIITTQPYTDDDIRKILE 369

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
           IR +EE +E++EEA + L  +G  TSLRYA+ L+  A++      GK VE E +++    
Sbjct: 370 IRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEVEDIQRVYRL 429

Query: 423 FADVKRSIAFV 433
           F DV+RS+ ++
Sbjct: 430 FLDVRRSMQYL 440


>pir||T40697 probable tata binding protein-interacting protein - fission yeast
           (Schizosaccharomyces pombe) >gi|4455781|emb|CAB36870.1|
           (AL035536) putative tata binding protein-interacting
           protein [Schizosaccharomyces pombe]
           Length = 465
           
 Score =  397 bits (1008), Expect = e-109
 Identities = 198/433 (45%), Positives = 304/433 (69%), Gaps = 14/433 (3%)

Query: 11  KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
           K ER+GAHSHI+G+GL++N + K    GMVGQ+KAR AAG+ +K+I++G++AG+ IL+ G
Sbjct: 13  KLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEGRIAGRAILMAG 72

Query: 71  PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
           P  +GKTAIAMG+A+ LG D PFV +S SE+YS E+ KTE L QALR++IGVRI EE ++
Sbjct: 73  PPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALRKSIGVRIKEETEI 132

Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
            EG V ++++ R+    N   +      +T+++ D +     G ++   L +  +  GDV
Sbjct: 133 IEGEVVEVQIDRSITGGNKQGK------LTIRSTDMETVYDLGTKMIDSLTKEKVLAGDV 186

Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           I ID   GRV+++G +    ++ + +    + V+ P G + K KE  +TV+LHD+DV+N+
Sbjct: 187 ISIDKSVGRVTKLGRSFSRARDYDAMGADTRFVQCPQGEIQKRKEVVHTVSLHDIDVINS 246

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R  G  +L  G   EI  E+RE+++  V +W EEGKA +VPGVLF+DE HMLDIE FSF 
Sbjct: 247 RTQGFLALFSGDTGEIKPEVREQINTKVSEWREEGKAEIVPGVLFVDEVHMLDIECFSFF 306

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RA+E++LAPI+I+A+NRG+T+IRGT+  +PHGIP+D+LDR+LII+T PY  EE++EI+K
Sbjct: 307 NRALEDDLAPIVIMASNRGITRIRGTNYRSPHGIPVDLLDRMLIISTLPYSHEEVKEILK 366

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR---VEREHVEKAKEY 422
           IR +EE +++   AL+YL+ +G++TSLRYA+ L++ ++ +A  ++   +E   + +  E 
Sbjct: 367 IRCQEEDVDMEPSALDYLSTIGQETSLRYALLLISSSNQVALKRKSATIEESDIRRVYEL 426

Query: 423 FADVKRSIAFVEK 435
           F D KRS+ ++E+
Sbjct: 427 FLDQKRSVEYLEE 439


>gi|9790083 Pontin 52 [Mus musculus] >gi|7449960|pir||JC5521 TATA-binding
           protein-interacting protein 49 - rat
           >gi|2225877|dbj|BAA20875.1| (AB002406) TIP49 [Rattus
           norvegicus] >gi|4106528|gb|AAD02877.1| (AF100694)
           Pontin52 [Mus musculus] >gi|4521276|dbj|BAA76313.1|
           (AB001581) DNA helicase p50 [Rattus norvegicus]
           Length = 456
           
 Score =  395 bits (1003), Expect = e-109
 Identities = 217/443 (48%), Positives = 292/443 (64%), Gaps = 14/443 (3%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           M + E   T K +R+ +HSH++GLGLDE+G AK    G+VGQ  AREA G+ V+LIK  K
Sbjct: 1   MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           +AG+ +LL GP G+GKTA+A+ IA+ELG  VPF  + GSE+YS E+KKTE L +  RRAI
Sbjct: 61  MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           G+RI E ++VYEG V ++    T +P   Y +    VII LKT    K ++    I   L
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180

Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
            +  +E GDVI I+A +G V R G   T   E  L   + V LP G V K KE    VTL
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240

Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
           HDLDV NAR  G   ++   G        EI D++R  +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLF 300

Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGT-DLEAPHGIPLDMLDRLLI 349
           +DE HMLDIE F++L RA+E+ +API+I A+NRG   IRGT D+ +PHGIPLD+LDR++I
Sbjct: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360

Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA--- 406
           I T  Y  +E+++IIKIRA+ E I +SEEAL +L E+G KT+LRY+VQLL PA+++A   
Sbjct: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420

Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
           G   +E+EHVE+  E F D K S
Sbjct: 421 GKDSIEKEHVEEISELFYDAKSS 443


>gi|4506753 TATA binding protein interacting protein 49 kDa [Homo sapiens]
           >gi|7449961|pir||JE0334 nuclear matrix protein NMP 238 -
           human >gi|3132308|dbj|BAA28169.1| (AB012122) TIP49 [Homo
           sapiens] >gi|3243035|gb|AAC77819.1| (AF070735) RuvB-like
           protein RUVBL1 [Homo sapiens]
           >gi|3892584|emb|CAA08986.1| (AJ010058) Nuclear matrix
           protein NMP238 [Homo sapiens] >gi|4151525|gb|AAD04427.1|
           (AF099084) Pontin52 [Homo sapiens]
           >gi|5327000|emb|CAB46271.1| (Y18418) erythrocyte
           cytosolic protein of 54 kDa, ECP-54 [Homo sapiens]
           Length = 456
           
 Score =  394 bits (1002), Expect = e-109
 Identities = 217/443 (48%), Positives = 292/443 (64%), Gaps = 14/443 (3%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           M + E   T K +R+ +HSH++GLGLDE+G AK    G+VGQ  AREA G+ V+LIK  K
Sbjct: 1   MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           +AG+ +LL GP G+GKTA+A+ IA+ELG  VPF  + GSE+YS E+KKTE L +  RRAI
Sbjct: 61  MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           G+RI E ++VYEG V ++    T +P   Y +    VII LKT    K ++    I   L
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180

Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
            +  +E GDVI I+A +G V R G   T   E  L   + V LP G V K KE    VTL
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240

Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
           HDLDV NAR  G   ++   G        EI D++R  +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF 300

Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGT-DLEAPHGIPLDMLDRLLI 349
           +DE HMLDIE F++L RA+E+ +API+I A+NRG   IRGT D+ +PHGIPLD+LDR++I
Sbjct: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360

Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA--- 406
           I T  Y  +E+++IIKIRA+ E I +SEEAL +L E+G KT+LRY+VQLL PA+++A   
Sbjct: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420

Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
           G   +E+EHVE+  E F D K S
Sbjct: 421 GKDSIEKEHVEEISELFYDAKSS 443


>gi|6755382 RuvB-like protein 2 [Mus musculus] >gi|4521249|dbj|BAA76297.1|
           (AB013912) DNA helicase [Mus musculus]
           Length = 463
           
 Score =  391 bits (995), Expect = e-108
 Identities = 195/435 (44%), Positives = 301/435 (68%), Gaps = 13/435 (2%)

Query: 11  KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
           + ER+GAHSHIRGLGLD+  + +    GMVGQ+ AR AAG+ +++I++GK+AG+ +L+ G
Sbjct: 18  RIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAG 77

Query: 71  PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
             G+GKTAIAMG+A+ LG D PF  I+GSEI+S E+ KTE L QA RR+IGVRI EE ++
Sbjct: 78  QPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEI 137

Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
            EG V ++++ R        +       +TLKT + +     G ++   L +  ++ GDV
Sbjct: 138 IEGEVVEIQIDRPATGTGSKVGK-----LTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           I ID  TG++S++G +    ++ + +  + K V+ P G + K KE  +TV+LH++DV+N+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINS 252

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R  G  +L  G   EI  E+RE+++  V +W EEGKA ++PGVLFIDE HMLDIE+FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RA+E+++AP+LI+ATNRG+T+IRGT  ++PHGIP+D+LDRLLI++T PY +++ ++I++
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILR 372

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
           IR +EE +E+SE+A   L  +G +TSLRYA+QL+  AS++     G  V+ + +++    
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 432

Query: 423 FADVKRSIAFVEKLE 437
           F D  RS  ++++ +
Sbjct: 433 FLDESRSTQYMKEYQ 447


>gi|5730023 RuvB (E coli homolog)-like 2 [Homo sapiens]
           >gi|11427537|ref|XP_009417.1| RuvB (E coli homolog)-like
           2 [Homo sapiens] >gi|11280157|pir||T46313 hypothetical
           protein DKFZp434K1011.1 - human
           >gi|4587311|dbj|BAA76708.1| (AB024301) RuvB-like DNA
           helicase TIP49b [Homo sapiens]
           >gi|5020422|gb|AAD38073.1|AF155138_1 (AF155138) RUVBL2
           protein [Homo sapiens] >gi|5326998|emb|CAB46270.1|
           (Y18417) erythrocyte cytosolic protein of 51 kDa, ECP-51
           [Homo sapiens] >gi|6807657|emb|CAB66677.1| (AL136743)
           hypothetical protein [Homo sapiens]
           >gi|9367027|gb|AAF87087.1|AF124607_1 (AF124607) Reptin52
           [Homo sapiens]
           Length = 463
           
 Score =  391 bits (994), Expect = e-108
 Identities = 195/435 (44%), Positives = 301/435 (68%), Gaps = 13/435 (2%)

Query: 11  KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
           + ER+GAHSHIRGLGLD+  + +    GMVGQ+ AR AAG+ +++I++GK+AG+ +L+ G
Sbjct: 18  RIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAG 77

Query: 71  PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
             G+GKTAIAMG+A+ LG D PF  I+GSEI+S E+ KTE L QA RR+IGVRI EE ++
Sbjct: 78  QPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEI 137

Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
            EG V ++++ R        +       +TLKT + +     G ++   L +  ++ GDV
Sbjct: 138 IEGEVVEIQIDRPATGTGSKVGK-----LTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           I ID  TG++S++G +    ++ + +  + K V+ P G + K KE  +TV+LH++DV+N+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINS 252

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R  G  +L  G   EI  E+RE+++  V +W EEGKA ++PGVLFIDE HMLDIE+FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RA+E+++AP+LI+ATNRG+T+IRGT  ++PHGIP+D+LDRLLI++T PY +++ ++I++
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 372

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
           IR +EE +E+SE+A   L  +G +TSLRYA+QL+  AS++     G  V+ + +++    
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 432

Query: 423 FADVKRSIAFVEKLE 437
           F D  RS  ++++ +
Sbjct: 433 FLDESRSTQYMKEYQ 447


>pir||T46049 RuvB DNA helicase-like protein - Arabidopsis thaliana
           >gi|6723428|emb|CAB66921.1| (AL132965) RuvB DNA
           helicase-like protein [Arabidopsis thaliana]
           Length = 473
           
 Score =  390 bits (990), Expect = e-107
 Identities = 208/435 (47%), Positives = 293/435 (66%), Gaps = 11/435 (2%)

Query: 11  KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
           + ER+GAHSHIRGLGLD   + + + +GMVGQIKAR+AAG+ ++LI+ GK++G+ IL+ G
Sbjct: 14  RIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGKISGRAILIAG 73

Query: 71  PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
             G+GK AIAMGIA+ LG++ PF  I+GSEI+S E+ KTE L QA R+AIGVRI EE  V
Sbjct: 74  QPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKAIGVRIKEETDV 133

Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
            EG V  + + R   P +    V ++  IT+KT D +     G ++   L +  ++ GDV
Sbjct: 134 IEGEVVTISIDR---PASSGGSVKKTGKITMKTTDMESNFDLGWKLIEPLDKEKVQSGDV 190

Query: 191 IQIDAETGRVSRIGTTKEEEGLFF-----RKKVELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           I +D   G+++++G +      F       K V+ P G + K KE  ++VTLH++DV+N+
Sbjct: 191 IVLDRFCGKITKLGRSFTRSRDFDVMGSKTKFVQCPEGELEKRKEVLHSVTLHEIDVINS 250

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R  G  +L  G   EI  E RE+ D  V +W EEGKA +VPGVLFIDE HMLDIE FSFL
Sbjct: 251 RTQGYLALFTGDTGEIRSETREQSDTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 310

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RA+EN+++PIL++ATNRGMT IRGT+  + HGIP+D LDRLLII T+PY ++EIR I++
Sbjct: 311 NRALENDMSPILVVATNRGMTTIRGTNQISAHGIPIDFLDRLLIITTQPYTQDEIRNILE 370

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
           IR +EE +E++EEA + L  +G  TSLRYA+ L+  A++      GK VE + +E+    
Sbjct: 371 IRCQEEDVEMNEEAKQLLTLIGCNTSLRYAIHLINAAALACLKRKGKVVEIQDIERVYRL 430

Query: 423 FADVKRSIAFVEKLE 437
           F D KRS+ ++ + E
Sbjct: 431 FLDTKRSMQYLVEHE 445


>pir||T32710 hypothetical protein T22D1.10 - Caenorhabditis elegans
           >gi|9798160|gb|AAF98631.1| (AF039052) contains
           similarity to ATPases [Caenorhabditis elegans]
           Length = 448
           
 Score =  380 bits (966), Expect = e-104
 Identities = 199/428 (46%), Positives = 283/428 (65%), Gaps = 13/428 (3%)

Query: 10  IKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLV 69
           +K ER   HSHI GLGL++  +A+++  GMVGQ+ AR+AAG+ VK+I++GK+AG+ +L+ 
Sbjct: 13  VKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAGRALLVT 72

Query: 70  GPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERK 129
           G  G+GKTAIA+ I++ELGED PFV I  SEIYS E+ KTE L QA RRA+G++I EE +
Sbjct: 73  GEPGAGKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQIKEETE 132

Query: 130 VYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGD 189
           V EG V  +EV R+ +   P +       +T++T D +     G ++    L+  +  GD
Sbjct: 133 VLEGEVISLEVDRSANGMGPKVGK-----LTMRTTDMETIYDLGSKMVDACLKEKVMPGD 187

Query: 190 VIQIDAETGRVSRIGTTKEEEGLFFR-----KKVELPSGPVLKIKEFTYTVTLHDLDVVN 244
           VIQ+D  +GRV+R+G +      +       K V+ P G + K +E  +TV LHD+DV+N
Sbjct: 188 VIQVDKASGRVTRLGRSFNRSHDYDAMGPKVKLVQCPDGEIQKRRETVHTVCLHDIDVIN 247

Query: 245 ARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSF 304
           +R  G  +L  G   EI  E+R+++++ V +W EEGKA  VPGVLFIDE HMLDIE FSF
Sbjct: 248 SRTQGYVALFSGDTGEIKAEVRDQINKKVLEWREEGKAKFVPGVLFIDEAHMLDIECFSF 307

Query: 305 LARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREII 364
           L RA+E EL+P++I+ATNR + K+RGTD+E+ HGIP D LDR+LIIN  PY KE+  +I+
Sbjct: 308 LNRAIEGELSPLIIMATNRLIEKVRGTDVESAHGIPSDFLDRMLIINAIPYTKEDTAKIL 367

Query: 365 KIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASII---AGGKRVEREHVEKAKE 421
            IR  EE ++L   AL+ L +L E TSLRY + L+A + +I   +  + V  +H+  A  
Sbjct: 368 SIRCDEEGVKLQPTALDLLVKLQEATSLRYCIHLIAASEVIRIRSKAEIVTTDHIGSAYR 427

Query: 422 YFADVKRS 429
            F D KRS
Sbjct: 428 LFFDTKRS 435


>gb|AAF43412.1|AF233279_1 (AF233279) reptin [Drosophila melanogaster]
           >gi|7293815|gb|AAF49182.1| (AE003517) reptin gene
           product [Drosophila melanogaster]
           Length = 481
           
 Score =  379 bits (963), Expect = e-104
 Identities = 195/442 (44%), Positives = 295/442 (66%), Gaps = 13/442 (2%)

Query: 4   IEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAG 63
           IE     + ER+GAHSHIRGLGLD+  +A+ +  GMVGQ  AR AAG+ V+++++GK+AG
Sbjct: 7   IEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARRAAGVVVQMVREGKIAG 66

Query: 64  KGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVR 123
           + ILL G   +GKTAIA+G+A+ LG + PF  +SGSEIYS E+ KTE L QALR++IGVR
Sbjct: 67  RCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVR 126

Query: 124 ISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLEL 183
           I EE ++ EG V ++++ R        +       +TLKT + +     G +I    ++ 
Sbjct: 127 IKEETEIIEGEVVEIQIERPASGTGQKVGK-----VTLKTTEMETNYDLGNKIIECFMKE 181

Query: 184 GIEEGDVIQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLH 238
            I+ GDVI ID  +G+V+++G +    ++ +    + + V+ P G + K KE  +TVTLH
Sbjct: 182 KIQAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLH 241

Query: 239 DLDVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLD 298
           ++DV+N+R  G  +L  G   EI  E+R++++  V +W EEGKA + PGVLFIDE HMLD
Sbjct: 242 EIDVINSRTHGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLD 301

Query: 299 IEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKE 358
           IE FSFL RA+E+++AP++++ATNRG+T+IRGT+  +PHGIP+D+LDR++II T PY ++
Sbjct: 302 IECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEK 361

Query: 359 EIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR---VEREH 415
           E++EI+KIR +EE   +  +AL  L  +   TSLRYA+QL+  A+++   ++   V  E 
Sbjct: 362 EVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTED 421

Query: 416 VEKAKEYFADVKRSIAFVEKLE 437
           V+K    F D  RS   +++ +
Sbjct: 422 VKKVYSLFLDENRSSKILKEYQ 443


>emb|CAB76908.1| (AJ276264) putative Ruv DNA-helicase [Cicer arietinum]
           Length = 458
           
 Score =  376 bits (956), Expect = e-103
 Identities = 209/448 (46%), Positives = 290/448 (64%), Gaps = 13/448 (2%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           M + E   T K +RV  H+HI+GLGL+ +GKA     G VGQ +AREA G+ V +I+Q K
Sbjct: 4   MKIEEVQSTTKKQRVATHTHIKGLGLEVSGKALPFASGFVGQAEAREACGLVVDMIRQKK 63

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           +AGK +LL GP G+GKTA+A+GI +ELG  VPF  + GSE+YS EVKKTE L +  RRAI
Sbjct: 64  MAGKALLLAGPPGTGKTALALGICQELGTKVPFCPMVGSEVYSTEVKKTEVLMENFRRAI 123

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           G+RI E ++VYEG V ++    T      Y +    VII LKT    K ++    I   L
Sbjct: 124 GLRIKENKEVYEGEVTELSPEETESLTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183

Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKE---EEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
           ++  +  GDVI I+A +G V R+G +     E  L   + V LP G V K KE    VTL
Sbjct: 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL 243

Query: 238 HDLDVVNARA-GGIFSLIFGGGM------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
           HDLD  NAR  GG   L   G M      EI D++R+ +++ V ++I+EG A LVPGVLF
Sbjct: 244 HDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLF 303

Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLII 350
           IDE HMLD+E FS+L RA+E+ L+PI+I ATNRG+  +RGTD+ +PHGIP+D+LDRL+II
Sbjct: 304 IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICTVRGTDMTSPHGIPVDLLDRLVII 363

Query: 351 NTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---G 407
            T+ Y   EI +I+ IRA+ E++ + EE+L +L E+G++TSLR+AVQLL+PAS++A   G
Sbjct: 364 RTQTYGPAEIIQILAIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASVVAKING 423

Query: 408 GKRVEREHVEKAKEYFADVKRSIAFVEK 435
              + +  +E+    + D K S   +++
Sbjct: 424 RDNICKADLEEICSLYLDAKSSAKLLQE 451


>dbj|BAB08331.1| (AB007651) Ruv DNA-helicase-like protein [Arabidopsis thaliana]
           Length = 458
           
 Score =  374 bits (949), Expect = e-102
 Identities = 208/440 (47%), Positives = 288/440 (65%), Gaps = 14/440 (3%)

Query: 4   IEELP-TIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLA 62
           IEE+  T K +R+  H+HI+GLGL+  G    +  G VGQ++AREAAG+ V +IKQ K+A
Sbjct: 6   IEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKKMA 65

Query: 63  GKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGV 122
           GK +LL GP G+GKTA+A+GI++ELG  VPF  + GSE+YS+EVKKTE L +  RRAIG+
Sbjct: 66  GKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGL 125

Query: 123 RISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLE 182
           RI E ++VYEG V ++    T      Y +    V+ITLKT    K ++    I   L++
Sbjct: 126 RIKETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDPTIYDALIK 185

Query: 183 LGIEEGDVIQIDAETGRVSRIGTTKE---EEGLFFRKKVELPSGPVLKIKEFTYTVTLHD 239
             +  GDVI I+A +G V R+G +     E  L   + V LP G V K KE    VTL D
Sbjct: 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLQD 245

Query: 240 LDVVNARA-GGIFSLIFGGGM------EINDEIRERVDQTVKQWIEEGKATLVPGVLFID 292
           LD  NAR  GG   L   G M      EI D++R+ +++ V ++I+EG A LVPGVLFID
Sbjct: 246 LDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFID 305

Query: 293 ECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINT 352
           E HMLD+E FS+L RA+E+ L+PI+I ATNRG+  +RGTD+ +PHG+P+D+LDRL+II T
Sbjct: 306 EVHMLDMECFSYLNRALESSLSPIVIFATNRGVCNVRGTDMPSPHGVPIDLLDRLVIIRT 365

Query: 353 EPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGK 409
           + Y   E+ +II IRA+ E++ + EE L  L E+G++TSLR+AVQLL+PASI+A   G  
Sbjct: 366 QIYDPSEMIQIIAIRAQVEELTVDEECLVLLGEIGQRTSLRHAVQLLSPASIVAKMNGRD 425

Query: 410 RVEREHVEKAKEYFADVKRS 429
            + +  +E+    + D K S
Sbjct: 426 NICKADIEEVTSLYLDAKSS 445


>gb|AAD34041.1|AF151804_1 (AF151804) CGI-46 protein [Homo sapiens]
           Length = 442
           
 Score =  370 bits (941), Expect = e-101
 Identities = 187/408 (45%), Positives = 281/408 (68%), Gaps = 10/408 (2%)

Query: 11  KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
           + ER+GAHSHIRGLGLD+  + +    GMVGQ+ AR AAG+ +++I++GK+AG+ +L+ G
Sbjct: 18  RIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAG 77

Query: 71  PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
             G+GKTAIAMG+A+ LG D PF  I+GSEI+S E+ KTE L QA RR+IGVRI EE ++
Sbjct: 78  QPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEI 137

Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
            EG V ++++ R        +       +TLKT + +     G ++   L +  ++ GDV
Sbjct: 138 IEGEVVEIQIDRPATGTGSKVGK-----LTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192

Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
           I ID  TG++S++G +    +  + +  + K V+ P G + K KE  +TV+LH++DV+N+
Sbjct: 193 ITIDKATGKISKLGRSFTRARNYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINS 252

Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
           R  G  +L  G   EI  E+RE+++  V +W EEGKA ++PGVLFIDE HMLDIE+FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312

Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
            RA+E+++AP+LI+ATNRG+T+IRGT  ++PHGIP+D+LDRLLI++T PY +++ ++I++
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 372

Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVER 413
           IR +EE +E+SE+A   L  +G +TSLR         +  AG  RV++
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRTPSSSSQLPAWCAGNARVQK 420


>gi|6320396 RUVB-like protein; Rvb1p [Saccharomyces cerevisiae]
           >gi|1077539|pir||S52698 hypothetical protein YDR190c -
           yeast (Saccharomyces cerevisiae)
           >gi|755784|emb|CAA88704.1| (Z48784) unknown
           [Saccharomyces cerevisiae]
           Length = 463
           
 Score =  369 bits (937), Expect = e-101
 Identities = 205/435 (47%), Positives = 282/435 (64%), Gaps = 14/435 (3%)

Query: 14  RVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTG 73
           R  AH+HI+GLGLDE+G AK +  G VGQI+AREA G+ V LIK  K++G+ ILL G   
Sbjct: 23  RTAAHTHIKGLGLDESGVAKRVEGGFVGQIEAREACGVIVDLIKAKKMSGRAILLAGGPS 82

Query: 74  SGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEG 133
           +GKTA+A+ I++ELG  VPF  + GSE+YS EVKKTE L +  RRAIG+RI E ++VYEG
Sbjct: 83  TGKTALALAISQELGPKVPFCPLVGSELYSVEVKKTETLMENFRRAIGLRIKETKEVYEG 142

Query: 134 MVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDVIQI 193
            V ++      +P   Y +    VI+ LK+    KT+R    I   +    +  GDVI I
Sbjct: 143 EVTELTPEDAENPLGGYGKTISHVIVGLKSAKGTKTLRLDPTIYESIQREKVSIGDVIYI 202

Query: 194 DAETGRVSRIGTT---KEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDLDVVNARAGGI 250
           +A TG V R+G +     E  L   + V LP G V K KE    VTLHDLDV NAR  G 
Sbjct: 203 EANTGAVKRVGRSDAYATEFDLETEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGG 262

Query: 251 FSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFS 303
             +I   G        EI +++R+ V++ V ++I++G A L+PGVLFIDE +MLDIE F+
Sbjct: 263 QDVISMMGQLLKPKKTEITEKLRQEVNKVVAKYIDQGVAELIPGVLFIDEVNMLDIEIFT 322

Query: 304 FLARAMENELAPILILATNRGMTKIRGT-DLEAPHGIPLDMLDRLLIINTEPYKKEEIRE 362
           +L +A+E+ +AP+++LA+NRGMT +RGT D+ +PHG+P D++DRLLI+ T PY K+EIR 
Sbjct: 323 YLNKALESNIAPVVVLASNRGMTTVRGTEDVISPHGVPPDLIDRLLIVRTLPYDKDEIRT 382

Query: 363 IIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKA 419
           II+ RA  E++++   AL+ LA +G +TSLRYA+QLLAP  I+A     K +    V +A
Sbjct: 383 IIERRATVERLQVESSALDLLATMGTETSLRYALQLLAPCGILAQTSNRKEIVVNDVNEA 442

Query: 420 KEYFADVKRSIAFVE 434
           K  F D KRS   +E
Sbjct: 443 KLLFLDAKRSTKILE 457


>gi|6325021 RUVB-like protein; Rvb2p [Saccharomyces cerevisiae]
           >gi|2132242|pir||S61029 hypothetical protein YPL235w -
           yeast (Saccharomyces cerevisiae)
           >gi|1061254|emb|CAA91609.1| (Z67751) putative protein
           [Saccharomyces cerevisiae] >gi|1181253|emb|CAA64252.1|
           (X94561) ATP/GTP binding site motif A (P-loop)
           [Saccharomyces cerevisiae] >gi|1370486|emb|CAA97952.1|
           (Z73591) ORF YPL235w [Saccharomyces cerevisiae]
           Length = 471
           
 Score =  367 bits (931), Expect = e-100
 Identities = 188/431 (43%), Positives = 297/431 (68%), Gaps = 14/431 (3%)

Query: 15  VGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTGS 74
           + AHSHI GLGLDEN + +   +GMVGQ++AR AAG+ +K+++ G +AG+ +L+ GP  +
Sbjct: 20  IAAHSHITGLGLDENLQPRPTSEGMVGQLQARRAAGVILKMVQNGTIAGRAVLVAGPPST 79

Query: 75  GKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEGM 134
           GKTA+AMG+++ LG+DVPF  I+GSEI+S E+ KTE L QA R++IG++I EE ++ EG 
Sbjct: 80  GKTALAMGVSQSLGKDVPFTAIAGSEIFSLELSKTEALTQAFRKSIGIKIKEETELIEGE 139

Query: 135 VEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDVIQID 194
           V ++++ R+    +   +      +T+KT D +     G ++   L +  +  GDVI ID
Sbjct: 140 VVEIQIDRSITGGHKQGK------LTIKTTDMETIYELGNKMIDGLTKEKVLAGDVISID 193

Query: 195 AETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNARAGG 249
             +G+++++G +    ++ + +    + V+ P G + K K   +TV+LH++DV+N+R  G
Sbjct: 194 KASGKITKLGRSFARSRDYDAMGADTRFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQG 253

Query: 250 IFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFLARAM 309
             +L  G   EI  E+R++++  V +W EEGKA +VPGVLFIDE HMLDIE FSF+ RA+
Sbjct: 254 FLALFTGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRAL 313

Query: 310 ENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIKIRAK 369
           E+E API+++ATNRG++K RGT+ ++PHG+PLD+LDR +II T+ Y ++EI+ I+ IRA+
Sbjct: 314 EDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRSIIITTKSYNEQEIKTILSIRAQ 373

Query: 370 EEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR---VEREHVEKAKEYFADV 426
           EE++ELS +AL+ L + G +TSLRY+  L++ A  IA  ++   VE E V++A   F D 
Sbjct: 374 EEEVELSSDALDLLTKTGVETSLRYSSNLISVAQQIAMKRKNNTVEVEDVKRAYLLFLDS 433

Query: 427 KRSIAFVEKLE 437
            RS+ +V++ E
Sbjct: 434 ARSVKYVQENE 444


>gb|AAF54514.1| (AE003686) pontin gene product [alt 2] [Drosophila melanogaster]
           Length = 456
           
 Score =  365 bits (928), Expect = e-100
 Identities = 206/443 (46%), Positives = 282/443 (63%), Gaps = 14/443 (3%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           M + E   T++ +R+ AHSH++GLGLDE G A     G+VGQ  AREAAGI V LIK  K
Sbjct: 1   MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAGIVVDLIKSKK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           +AG+ +LL GP G+GKTAIA+ IA+ELG  VPF  + GSE++S E+KKTE L +  RR+I
Sbjct: 61  MAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSI 120

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           G+RI E ++VYEG V ++    T +P   Y +   +V+I LKT    K ++    I   L
Sbjct: 121 GLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDAL 180

Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
            +  +E GDVI I+A +G V R G   T   E  L   + V LP G V K KE    VTL
Sbjct: 181 QKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTL 240

Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
           HDLDV NAR  G   ++   G        EI D++R  +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF 300

Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRG-TDLEAPHGIPLDMLDRLLI 349
           IDE HMLD+E F++L +++E+ +API+I ATNRG   IRG TD+ +PHGIPLD+LDRLLI
Sbjct: 301 IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLI 360

Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPA---SIIA 406
           I T  Y   ++ +IIK+RA+ E ++L E A   L+E+G  ++LRYAVQLL PA     + 
Sbjct: 361 IRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVN 420

Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
           G  ++ ++ +E     F D KRS
Sbjct: 421 GRNQISKDDIEDVHSLFLDAKRS 443


>gb|AAF43411.1|AF233278_1 (AF233278) pontin [Drosophila melanogaster]
           Length = 456
           
 Score =  361 bits (916), Expect = 1e-98
 Identities = 204/443 (46%), Positives = 281/443 (63%), Gaps = 14/443 (3%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           M + E   T++ +R+ AHSH++GLGLDE G A     G+VGQ  AREAAGI V LIK  K
Sbjct: 1   MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAGIVVDLIKSKK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           +AG+ +LL G  G+GKTAIA+ IA+ELG  VPF  + GSE++S E+KKTE L +  RR+I
Sbjct: 61  MAGRALLLAGAPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSI 120

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           G+RI E ++VYEG V ++    T +P   Y +   +V+I LKT    K ++    I   L
Sbjct: 121 GLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDAL 180

Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
            +  +E GDVI I+A +G V R G   T   E  L   + V LP G V K KE    VTL
Sbjct: 181 QKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTL 240

Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
           HDLDV NAR  G   ++   G        EI D++R  +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF 300

Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRG-TDLEAPHGIPLDMLDRLLI 349
           IDE HMLD++ F++L +++E+ +API+I ATNRG   IRG TD+ +PHGIPLD+LDRLLI
Sbjct: 301 IDEIHMLDLKTFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLI 360

Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPA---SIIA 406
           I T  Y   ++ +IIK+RA+ E ++L E A   L+E+G  ++LRYAVQLL PA     + 
Sbjct: 361 IRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVN 420

Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
           G  ++ ++ +E     F D KRS
Sbjct: 421 GRNQISKDDIEDVHSLFLDAKRS 443


>gb|AAF54515.1| (AE003686) pontin gene product [alt 1] [Drosophila melanogaster]
           Length = 396
           
 Score =  307 bits (777), Expect = 2e-82
 Identities = 174/383 (45%), Positives = 242/383 (62%), Gaps = 14/383 (3%)

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
           +AG+ +LL GP G+GKTAIA+ IA+ELG  VPF  + GSE++S E+KKTE L +  RR+I
Sbjct: 1   MAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSI 60

Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
           G+RI E ++VYEG V ++    T +P   Y +   +V+I LKT    K ++    I   L
Sbjct: 61  GLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDAL 120

Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
            +  +E GDVI I+A +G V R G   T   E  L   + V LP G V K KE    VTL
Sbjct: 121 QKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTL 180

Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
           HDLDV NAR  G   ++   G        EI D++R  +++ V ++I++G A LVPGVLF
Sbjct: 181 HDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF 240

Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRG-TDLEAPHGIPLDMLDRLLI 349
           IDE HMLD+E F++L +++E+ +API+I ATNRG   IRG TD+ +PHGIPLD+LDRLLI
Sbjct: 241 IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLI 300

Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPA---SIIA 406
           I T  Y   ++ +IIK+RA+ E ++L E A   L+E+G  ++LRYAVQLL PA     + 
Sbjct: 301 IRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVN 360

Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
           G  ++ ++ +E     F D KRS
Sbjct: 361 GRNQISKDDIEDVHSLFLDAKRS 383


>pir||T19534 hypothetical protein C27H6.2 - Caenorhabditis elegans
           >gi|3874559|emb|CAB02793.1| (Z81042) predicted using
           Genefinder~Similarity to Yeast hypothetical 50.5 KD
           protein (TR:G755784)~cDNA EST EMBL:T01580 comes from
           this gene~cDNA EST EMBL:T01921 comes from this gene~cDNA
           EST yk61b3.3 comes from this gene~cDNA EST yk81a11.3
           comes from t>
           Length = 458
           
 Score =  302 bits (766), Expect = 4e-81
 Identities = 176/449 (39%), Positives = 265/449 (58%), Gaps = 30/449 (6%)

Query: 1   MAVIEEL-PTIK-FERVGAHSHIRGLGLD-ENGKAKFIGDGMVGQIKAREAAGIAVKLIK 57
           +A IEE+ PT K  +R+ AHSH++GLG+D E  +A +   G VGQ  AR AA I V +I+
Sbjct: 17  LAPIEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIR 76

Query: 58  QGKLAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALR 117
              +AG+ +L+ GP  +GKTAIA+ +++ELG+ VPFV +  SE++S EVKKTE L ++ R
Sbjct: 77  LKCMAGRAVLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFR 136

Query: 118 RAIGVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIA 177
           RAIG+R+ E + VYEG V ++              +   ++++LKT    K ++    I 
Sbjct: 137 RAIGLRVKETKDVYEGEVTELSPVEASDNSGMGKTISH-LVLSLKTAKGSKQLKLDPSIY 195

Query: 178 YQLLELGIEEGDVIQIDAETGRVSRIGTTK---EEEGLFFRKKVELPSGPVLKIKEFTYT 234
             +L+  +E GDVI I+A +G V R+G       E  L   + V +P G V K K+    
Sbjct: 196 DSILKQRVEVGDVIYIEANSGIVKRVGRCDVYASEFDLEADEFVPMPKGDVRKSKDIVQN 255

Query: 235 VTLHDLDVVNARAGG--------IFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVP 286
           V+LHDLD+ NAR  G        +  L+     E+ D +R  +++ V ++IE G A L+P
Sbjct: 256 VSLHDLDIANARPQGRQGDVSNIVSQLMTPKKTEVTDRLRSEINKVVNEYIESGVAELMP 315

Query: 287 GVLFIDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDR 346
           GVLFIDE HMLD+E F++L RA+E+ +AP+++ ATNRG T +RG   +APHGIP +MLDR
Sbjct: 316 GVLFIDEVHMLDVECFTYLYRALESPMAPVVVFATNRGTTTVRGLGDKAPHGIPPEMLDR 375

Query: 347 LLIINTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA 406
           L+II T  Y +E+IR+I+  R + E ++  E+A + L  L  +T                
Sbjct: 376 LMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLLTRLCAQT---------------C 420

Query: 407 GGKRVEREHVEKAKEYFADVKRSIAFVEK 435
           G + +E E V++  + F D   S+   E+
Sbjct: 421 GREVIEVEDVDRCTKLFMDRGESLKKAEE 449


>pir||T46873 hypothetical protein [imported] - Sulfolobus solfataricus
           (fragment) >gi|1706951|gb|AAB38088.1| (U52110) ATPase
           [Sulfolobus solfataricus]
           Length = 112
           
 Score =  155 bits (388), Expect = 9e-37
 Identities = 74/112 (66%), Positives = 91/112 (81%)

Query: 1   MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
           MA I E+  I+ E+   HSHI GLGLDE GKAKFI DG+VGQ++AREA+GI V+LI+QGK
Sbjct: 1   MAQIREIKKIEREKASIHSHITGLGLDEKGKAKFIADGLVGQVEAREASGIVVQLIRQGK 60

Query: 61  LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFL 112
           +AGKGIL VGP G+GKTA+A+ IA+ELGED PF  I+ SE+YS E+KKTE L
Sbjct: 61  MAGKGILFVGPPGTGKTALAVAIAKELGEDTPFTTINASEVYSTELKKTEIL 112


>gi|11432495 RuvB (E coli homolog)-like 1 [Homo sapiens]
           Length = 418
           
 Score =  153 bits (384), Expect = 3e-36
 Identities = 74/132 (56%), Positives = 105/132 (79%), Gaps = 1/132 (0%)

Query: 263 DEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFLARAMENELAPILILATN 322
           D++R  +++ V ++I++G A LVPGVLF+DE HMLDIE F++L RA+E+ +API+I A+N
Sbjct: 181 DKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASN 240

Query: 323 RGMTKIRGT-DLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIKIRAKEEKIELSEEALE 381
           RG   IRGT D+ +PHGIPLD+LDR++II T  Y  +E+++IIKIRA+ E I +SEEAL 
Sbjct: 241 RGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALN 300

Query: 382 YLAELGEKTSLR 393
           +L E+G KT+LR
Sbjct: 301 HLGEIGTKTTLR 312


 Score = 86.2 bits (210), Expect = 7e-16
 Identities = 40/76 (52%), Positives = 54/76 (70%)

Query: 1  MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
          M + E   T K +R+ +HSH++GLGLDE+G AK    G+VGQ  AREA G+ V+LIK  K
Sbjct: 1  MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60

Query: 61 LAGKGILLVGPTGSGK 76
          +AG+ +LL GP G+GK
Sbjct: 61 MAGRAVLLAGPPGTGK 76


>emb|CAC02848.1| (AL390114) probable erythrocyte cytosolic protein of 54 kda, ecp-54
           [Leishmania major]
           Length = 118
           
 Score =  126 bits (313), Expect = 5e-28
 Identities = 64/114 (56%), Positives = 80/114 (70%)

Query: 33  KFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTGSGKTAIAMGIARELGEDVP 92
           K I DG VGQ KAREAAGIAV+LI+  K+A + +L  GP G+GKTA+A+GIA ELG  VP
Sbjct: 3   KHIADGFVGQEKAREAAGIAVELIRSKKMASRALLFAGPPGTGKTALALGIAXELGXXVP 62

Query: 93  FVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEGMVEKMEVRRTRHP 146
           F  + GSE+YSAEV KTE L +  RRAIG+RI   + VY G V ++    T +P
Sbjct: 63  FCPMVGSEVYSAEVXKTEVLMENFRRAIGLRIKXXKDVYXGXVTELXAXETDNP 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.377 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152684272
Number of Sequences: 2977
Number of extensions: 6541289
Number of successful extensions: 32373
Number of sequences better than 1.0e-10: 26
Number of HSP's better than  0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32281
Number of HSP's gapped (non-prelim): 27
length of query: 441
length of database: 189,106,746
effective HSP length: 60
effective length of query: 381
effective length of database: 153,197,526
effective search space: 58368257406
effective search space used: 58368257406
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)