BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2107 (tip49) DE:TBP-interacting protein TIP49
(441 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75150 tbp-interacting protein tip49 PAB2107 - Pyrococcus a... 859 0.0
pir||D71191 hypothetical protein PH1804 - Pyrococcus horikoshii ... 836 0.0
gi|11499401 TBP-interacting protein TIP49 [Archaeoglobus fulgidu... 494 e-138
gb|AAK42590.1| TATA binding protein (TBP)-interacting protein (T... 483 e-135
pir||E72723 probable TATA-binding protein-interracing protein 49... 454 e-126
dbj|BAB08471.1| (AB013390) RuvB DNA helicase-like protein [Arabi... 400 e-110
pir||T40697 probable tata binding protein-interacting protein - ... 397 e-109
gi|9790083 Pontin 52 [Mus musculus] >gi|7449960|pir||JC5521 TATA... 395 e-109
gi|4506753 TATA binding protein interacting protein 49 kDa [Homo... 394 e-109
gi|6755382 RuvB-like protein 2 [Mus musculus] >gi|4521249|dbj|BA... 391 e-108
gi|5730023 RuvB (E coli homolog)-like 2 [Homo sapiens] >gi|11427... 391 e-108
pir||T46049 RuvB DNA helicase-like protein - Arabidopsis thalian... 390 e-107
pir||T32710 hypothetical protein T22D1.10 - Caenorhabditis elega... 380 e-104
gb|AAF43412.1|AF233279_1 (AF233279) reptin [Drosophila melanogas... 379 e-104
emb|CAB76908.1| (AJ276264) putative Ruv DNA-helicase [Cicer arie... 376 e-103
dbj|BAB08331.1| (AB007651) Ruv DNA-helicase-like protein [Arabid... 374 e-102
gb|AAD34041.1|AF151804_1 (AF151804) CGI-46 protein [Homo sapiens] 370 e-101
gi|6320396 RUVB-like protein; Rvb1p [Saccharomyces cerevisiae] >... 369 e-101
gi|6325021 RUVB-like protein; Rvb2p [Saccharomyces cerevisiae] >... 367 e-100
gb|AAF54514.1| (AE003686) pontin gene product [alt 2] [Drosophil... 365 e-100
gb|AAF43411.1|AF233278_1 (AF233278) pontin [Drosophila melanogas... 361 1e-98
gb|AAF54515.1| (AE003686) pontin gene product [alt 1] [Drosophil... 307 2e-82
pir||T19534 hypothetical protein C27H6.2 - Caenorhabditis elegan... 302 4e-81
pir||T46873 hypothetical protein [imported] - Sulfolobus solfata... 155 9e-37
gi|11432495 RuvB (E coli homolog)-like 1 [Homo sapiens] 153 3e-36
emb|CAC02848.1| (AL390114) probable erythrocyte cytosolic protei... 126 5e-28
>pir||F75150 tbp-interacting protein tip49 PAB2107 - Pyrococcus abyssi (strain
Orsay) >gi|5457795|emb|CAB49285.1| (AJ248284)
TBP-interacting protein TIP49 [Pyrococcus abyssi]
Length = 441
Score = 859 bits (2194), Expect = 0.0
Identities = 441/441 (100%), Positives = 441/441 (100%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK
Sbjct: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI
Sbjct: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL
Sbjct: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL 240
LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL
Sbjct: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL 240
Query: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300
DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE
Sbjct: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300
Query: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI 360
AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI
Sbjct: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI 360
Query: 361 REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK 420
REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK
Sbjct: 361 REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK 420
Query: 421 EYFADVKRSIAFVEKLEGMLK 441
EYFADVKRSIAFVEKLEGMLK
Sbjct: 421 EYFADVKRSIAFVEKLEGMLK 441
>pir||D71191 hypothetical protein PH1804 - Pyrococcus horikoshii
>gi|3258240|dbj|BAA30923.1| (AP000007) 441aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 441
Score = 836 bits (2135), Expect = 0.0
Identities = 418/441 (94%), Positives = 439/441 (98%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
MAVIEELP IKFERVGAHSHI+GLGLDENGKAKFIGDGMVGQ+KAREAAGIAVKLIKQGK
Sbjct: 1 MAVIEELPAIKFERVGAHSHIKGLGLDENGKAKFIGDGMVGQVKAREAAGIAVKLIKQGK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI
Sbjct: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
GVRISEERKVYEGMVEKME+R+TRHPFNPYIE+PES+ ITLKTKDDKKTIRAGREIAYQL
Sbjct: 121 GVRISEERKVYEGMVEKMEIRKTRHPFNPYIEIPESIRITLKTKDDKKTIRAGREIAYQL 180
Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDL 240
L++G+EEGDVIQIDAETGRVS+IGTTKEEEGLFF+KKVELP+GPVLKIKEFTYTVTLHDL
Sbjct: 181 LDMGVEEGDVIQIDAETGRVSKIGTTKEEEGLFFKKKVELPTGPVLKIKEFTYTVTLHDL 240
Query: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300
DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE
Sbjct: 241 DVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIE 300
Query: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEI 360
AFSFLARAMENELAPILILATNRGMTKIRGTD+EAPHGIP+DMLDRLLIINTEPYKK+EI
Sbjct: 301 AFSFLARAMENELAPILILATNRGMTKIRGTDIEAPHGIPVDMLDRLLIINTEPYKKDEI 360
Query: 361 REIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVEREHVEKAK 420
REIIKIRAKEEK+ELSEEALEYLA+LGEKTSLRYAVQLLAPASIIAGGKRVE+EHVEKA+
Sbjct: 361 REIIKIRAKEEKVELSEEALEYLADLGEKTSLRYAVQLLAPASIIAGGKRVEKEHVEKAR 420
Query: 421 EYFADVKRSIAFVEKLEGMLK 441
EYFAD+KRSI+FVEKLEGMLK
Sbjct: 421 EYFADIKRSISFVEKLEGMLK 441
>gi|11499401 TBP-interacting protein TIP49 [Archaeoglobus fulgidus]
>gi|7449962|pir||D69476 TBP-interacting protein TIP49
homolog - Archaeoglobus fulgidus
>gi|2648730|gb|AAB89434.1| (AE000977) TBP-interacting
protein TIP49 [Archaeoglobus fulgidus]
Length = 449
Score = 494 bits (1257), Expect = e-138
Identities = 257/435 (59%), Positives = 326/435 (74%), Gaps = 6/435 (1%)
Query: 9 TIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILL 68
T FER+ AHSHIRGLGLDEN +AK + DG+VGQ +AREAAG+ V+LIK GK+AG+GIL+
Sbjct: 9 TQTFERISAHSHIRGLGLDENLRAKDVADGLVGQKRAREAAGVIVRLIKSGKMAGRGILM 68
Query: 69 VGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEER 128
GP G+GKTAIA+ I++ELG+D+PFVQ+S SE YSAE+KKTE L QA+R+AIGVRI E R
Sbjct: 69 AGPPGTGKTAIAVAISKELGKDIPFVQVSASEFYSAEMKKTEALIQAMRKAIGVRIRETR 128
Query: 129 KVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEG 188
V EG V ++ +P+NP ++PES +TL TKD+K+T G +A Q GIE G
Sbjct: 129 TVLEGEVVGLDYNMVPNPYNPTQKIPESATLTLATKDEKRTFSVGGRLAMQFFTQGIEVG 188
Query: 189 DVIQIDAETGRVSRIGTT---KEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDLDVVNA 245
DVI ID ETGR+ ++G + K++ L + V +PSG V K KEFTY VTLHDLD NA
Sbjct: 189 DVIVIDKETGRIGKLGRSEKAKKKYDLGDDEVVPVPSGKVEKEKEFTYVVTLHDLDEANA 248
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R IFSL EI++E+RE VD+ VK+ +EEG+A LVPGVLFIDE H++DIE F+F+
Sbjct: 249 RRTSIFSLFSPPSREIDNEVREAVDEQVKRLVEEGRAELVPGVLFIDETHLMDIELFAFM 308
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RAME+E+API+ILA+NRG ++IRGTD+ APHGIPLD+LDRLLII TEPY +EEI+ II+
Sbjct: 309 NRAMESEMAPIIILASNRGFSRIRGTDIVAPHGIPLDLLDRLLIITTEPYSREEIKTIIE 368
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
IRA E I LS EA+E L ++GEKTSLRYAVQLLAPA A +VE E VE+A
Sbjct: 369 IRAAESGIMLSNEAMEKLTDIGEKTSLRYAVQLLAPAYEFAKMRNSGKVELEDVERAASI 428
Query: 423 FADVKRSIAFVEKLE 437
FADV +S A+++K E
Sbjct: 429 FADVSQSSAYLKKWE 443
>gb|AAK42590.1| TATA binding protein (TBP)-interacting protein (TIP49-like),
putative [Sulfolobus solfataricus]
Length = 476
Score = 483 bits (1230), Expect = e-135
Identities = 258/452 (57%), Positives = 330/452 (72%), Gaps = 14/452 (3%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M+ I EL E+ HSHI+GLGLD NGKAKFI DG+VGQ +AREAAG+ V+LIKQGK
Sbjct: 25 MSEIRELKKPIREKASIHSHIKGLGLDSNGKAKFIADGLVGQAEAREAAGVVVQLIKQGK 84
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
++GKGIL VGP G+GKTA+A+ IARELGED PF I+ SEIYS E+KKTE L Q +R++I
Sbjct: 85 MSGKGILFVGPPGTGKTALAVAIARELGEDTPFTAINASEIYSTELKKTEILTQLIRKSI 144
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
GVRI E+R VYEG+V+ +++ R NPY + P ITL TKDD++T+ G EIA QL
Sbjct: 145 GVRIREKRLVYEGVVKDRKIKVARSRLNPYSQAPVEAQITLTTKDDERTLSVGEEIAQQL 204
Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKEEEG-----LFFRKKVELPSGPVLKIKEFTYTV 235
+ LG+++GDVI IDA+TG+V G K EG + K +E+P+GPV K KE T T+
Sbjct: 205 VSLGVKKGDVIMIDAQTGQVIVEGKAKGFEGAKTYDIETTKVLEMPTGPVRKEKEITTTL 264
Query: 236 TLHDLDV----VNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFI 291
TL+DLD+ N IFS F EIN+++R+ VD+ VK WI +G+A LV GVLFI
Sbjct: 265 TLNDLDLNLAARNLAVTAIFS--FFTEREINEDVRKEVDRLVKDWINQGRAELVVGVLFI 322
Query: 292 DECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIIN 351
D+ H LD+EAFSFL RA+E+ELAPILILATNRG+TKIRGTD+E+PHGIPLD+LDRLLII
Sbjct: 323 DDAHTLDLEAFSFLTRALESELAPILILATNRGLTKIRGTDIESPHGIPLDLLDRLLIIP 382
Query: 352 TEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR- 410
T PY +EI+EIIKIRA E +IEL +ALE L ++G + SLRY+VQLL P+ IIA
Sbjct: 383 TRPYNADEIKEIIKIRADELEIELDPQALEELTKIGVENSLRYSVQLLEPSLIIAQRNNR 442
Query: 411 --VEREHVEKAKEYFADVKRSIAFVEKLEGML 440
++ E V A + F+DVKRS+ FV++ E +L
Sbjct: 443 SIIKVEDVVIASKLFSDVKRSVKFVKEYENLL 474
>pir||E72723 probable TATA-binding protein-interracing protein 49 APE0326 -
Aeropyrum pernix (strain K1) >gi|5103965|dbj|BAA79281.1|
(AP000059) 473aa long hypothetical TATA-binding
protein-interracing protein 49 [Aeropyrum pernix]
Length = 473
Score = 454 bits (1155), Expect = e-126
Identities = 232/432 (53%), Positives = 314/432 (71%), Gaps = 10/432 (2%)
Query: 18 HSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTGSGKT 77
HSHI GLGLD +G+A+ IG G+VGQ +AREAAG+ V+++++G+L G+GIL+VGP G+GKT
Sbjct: 42 HSHITGLGLDADGRARKIGGGLVGQEEAREAAGVIVEMVREGRLGGRGILIVGPPGTGKT 101
Query: 78 AIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEGMVEK 137
A+A+ IARELGED PFV ++ E++ + K E L QA R+AIGVR+ E R+V EG+V
Sbjct: 102 ALAIAIARELGEDTPFVALNAGELFRGDSGKLEMLLQAFRKAIGVRVRERREVVEGVVTS 161
Query: 138 MEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDVIQIDAET 197
+ V + R PF+PY V ITL+TKD+ +T G E+A QL+ LG+ GDVI ID ET
Sbjct: 162 ISVSKRRTPFSPY-PVIAGARITLETKDESRTFTVGPEVAEQLVALGVRRGDVIVIDLET 220
Query: 198 GRVSRIGTTKEEEGLF---FRKKVELPSGPVLKIKEFTYTVTLHDLDVVNARAGGIFS-- 252
G V +G K F ++VELP GPV K+KEF T+TLHD+D A F+
Sbjct: 221 GVVRVVGRGKGRGQSFDIDVVREVELPEGPVRKVKEFVRTLTLHDIDASIAAQRVAFTGL 280
Query: 253 -LIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFLARAMEN 311
+F + E R++ D+ VK+W+ EGKA +V GV+FID+ H+LD+E+FSFL++AME+
Sbjct: 281 LSMFEAERGVTSEDRKKTDELVKKWVGEGKAEIVAGVIFIDDAHLLDMESFSFLSKAMES 340
Query: 312 ELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIKIRAKEE 371
+LAPI++LATNRG+ KIRGTD+E+PHGIP D+LDRLLII T PY ++EI+EII+IRA EE
Sbjct: 341 DLAPIIVLATNRGVAKIRGTDIESPHGIPRDLLDRLLIITTRPYTRDEIKEIIRIRADEE 400
Query: 372 KIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEYFADVKR 428
++ LSE ALE LA++G + SLRYA+QLL PA I+A G +RVE EHVE+A+ FAD+KR
Sbjct: 401 EVLLSENALERLADIGSEKSLRYAIQLLEPAMIVAKRRGSRRVEAEHVEEAERLFADIKR 460
Query: 429 SIAFVEKLEGML 440
SI VEK ++
Sbjct: 461 SIQLVEKYRDLM 472
>dbj|BAB08471.1| (AB013390) RuvB DNA helicase-like protein [Arabidopsis thaliana]
Length = 469
Score = 400 bits (1018), Expect = e-110
Identities = 205/431 (47%), Positives = 305/431 (70%), Gaps = 12/431 (2%)
Query: 11 KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
+ ER+GAHSHIRGLGLD + + + +GMVGQ+KAR+AAG+ +++I++GK+AG+ IL+ G
Sbjct: 14 RVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGKIAGRAILIAG 73
Query: 71 PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
G+GKTAIAMG+A+ LG + PF I+GSEI+S E+ KTE L Q+ R+AIGVRI EE +V
Sbjct: 74 QPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRKAIGVRIKEETEV 133
Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
EG V ++++ R P + + +S +T+KT D + G ++ L + ++ GDV
Sbjct: 134 IEGEVVEVQIDR---PASSGV-ASKSGKMTMKTTDMETVYDMGAKMIEALNKEKVQSGDV 189
Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
I ID TG+++++G + ++ + + + K V+ P G + K KE + VTLH++DV+N+
Sbjct: 190 IAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVTLHEIDVINS 249
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R G +L G EI E+RE++D V +W EEGKA +VPGVLFIDE HMLDIE FSFL
Sbjct: 250 RTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 309
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RA+ENE++PIL++ATNRG+T IRGT+ ++PHGIP+D+LDRLLII T+PY ++IR+I++
Sbjct: 310 NRALENEMSPILVVATNRGVTTIRGTNQKSPHGIPIDLLDRLLIITTQPYTDDDIRKILE 369
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
IR +EE +E++EEA + L +G TSLRYA+ L+ A++ GK VE E +++
Sbjct: 370 IRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEVEDIQRVYRL 429
Query: 423 FADVKRSIAFV 433
F DV+RS+ ++
Sbjct: 430 FLDVRRSMQYL 440
>pir||T40697 probable tata binding protein-interacting protein - fission yeast
(Schizosaccharomyces pombe) >gi|4455781|emb|CAB36870.1|
(AL035536) putative tata binding protein-interacting
protein [Schizosaccharomyces pombe]
Length = 465
Score = 397 bits (1008), Expect = e-109
Identities = 198/433 (45%), Positives = 304/433 (69%), Gaps = 14/433 (3%)
Query: 11 KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
K ER+GAHSHI+G+GL++N + K GMVGQ+KAR AAG+ +K+I++G++AG+ IL+ G
Sbjct: 13 KLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEGRIAGRAILMAG 72
Query: 71 PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
P +GKTAIAMG+A+ LG D PFV +S SE+YS E+ KTE L QALR++IGVRI EE ++
Sbjct: 73 PPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALRKSIGVRIKEETEI 132
Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
EG V ++++ R+ N + +T+++ D + G ++ L + + GDV
Sbjct: 133 IEGEVVEVQIDRSITGGNKQGK------LTIRSTDMETVYDLGTKMIDSLTKEKVLAGDV 186
Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
I ID GRV+++G + ++ + + + V+ P G + K KE +TV+LHD+DV+N+
Sbjct: 187 ISIDKSVGRVTKLGRSFSRARDYDAMGADTRFVQCPQGEIQKRKEVVHTVSLHDIDVINS 246
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R G +L G EI E+RE+++ V +W EEGKA +VPGVLF+DE HMLDIE FSF
Sbjct: 247 RTQGFLALFSGDTGEIKPEVREQINTKVSEWREEGKAEIVPGVLFVDEVHMLDIECFSFF 306
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RA+E++LAPI+I+A+NRG+T+IRGT+ +PHGIP+D+LDR+LII+T PY EE++EI+K
Sbjct: 307 NRALEDDLAPIVIMASNRGITRIRGTNYRSPHGIPVDLLDRMLIISTLPYSHEEVKEILK 366
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR---VEREHVEKAKEY 422
IR +EE +++ AL+YL+ +G++TSLRYA+ L++ ++ +A ++ +E + + E
Sbjct: 367 IRCQEEDVDMEPSALDYLSTIGQETSLRYALLLISSSNQVALKRKSATIEESDIRRVYEL 426
Query: 423 FADVKRSIAFVEK 435
F D KRS+ ++E+
Sbjct: 427 FLDQKRSVEYLEE 439
>gi|9790083 Pontin 52 [Mus musculus] >gi|7449960|pir||JC5521 TATA-binding
protein-interacting protein 49 - rat
>gi|2225877|dbj|BAA20875.1| (AB002406) TIP49 [Rattus
norvegicus] >gi|4106528|gb|AAD02877.1| (AF100694)
Pontin52 [Mus musculus] >gi|4521276|dbj|BAA76313.1|
(AB001581) DNA helicase p50 [Rattus norvegicus]
Length = 456
Score = 395 bits (1003), Expect = e-109
Identities = 217/443 (48%), Positives = 292/443 (64%), Gaps = 14/443 (3%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M + E T K +R+ +HSH++GLGLDE+G AK G+VGQ AREA G+ V+LIK K
Sbjct: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
+AG+ +LL GP G+GKTA+A+ IA+ELG VPF + GSE+YS E+KKTE L + RRAI
Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
G+RI E ++VYEG V ++ T +P Y + VII LKT K ++ I L
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
+ +E GDVI I+A +G V R G T E L + V LP G V K KE VTL
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240
Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
HDLDV NAR G ++ G EI D++R +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGVAELVPGVLF 300
Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGT-DLEAPHGIPLDMLDRLLI 349
+DE HMLDIE F++L RA+E+ +API+I A+NRG IRGT D+ +PHGIPLD+LDR++I
Sbjct: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360
Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA--- 406
I T Y +E+++IIKIRA+ E I +SEEAL +L E+G KT+LRY+VQLL PA+++A
Sbjct: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420
Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
G +E+EHVE+ E F D K S
Sbjct: 421 GKDSIEKEHVEEISELFYDAKSS 443
>gi|4506753 TATA binding protein interacting protein 49 kDa [Homo sapiens]
>gi|7449961|pir||JE0334 nuclear matrix protein NMP 238 -
human >gi|3132308|dbj|BAA28169.1| (AB012122) TIP49 [Homo
sapiens] >gi|3243035|gb|AAC77819.1| (AF070735) RuvB-like
protein RUVBL1 [Homo sapiens]
>gi|3892584|emb|CAA08986.1| (AJ010058) Nuclear matrix
protein NMP238 [Homo sapiens] >gi|4151525|gb|AAD04427.1|
(AF099084) Pontin52 [Homo sapiens]
>gi|5327000|emb|CAB46271.1| (Y18418) erythrocyte
cytosolic protein of 54 kDa, ECP-54 [Homo sapiens]
Length = 456
Score = 394 bits (1002), Expect = e-109
Identities = 217/443 (48%), Positives = 292/443 (64%), Gaps = 14/443 (3%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M + E T K +R+ +HSH++GLGLDE+G AK G+VGQ AREA G+ V+LIK K
Sbjct: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
+AG+ +LL GP G+GKTA+A+ IA+ELG VPF + GSE+YS E+KKTE L + RRAI
Sbjct: 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
G+RI E ++VYEG V ++ T +P Y + VII LKT K ++ I L
Sbjct: 121 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180
Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
+ +E GDVI I+A +G V R G T E L + V LP G V K KE VTL
Sbjct: 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240
Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
HDLDV NAR G ++ G EI D++R +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF 300
Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGT-DLEAPHGIPLDMLDRLLI 349
+DE HMLDIE F++L RA+E+ +API+I A+NRG IRGT D+ +PHGIPLD+LDR++I
Sbjct: 301 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360
Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA--- 406
I T Y +E+++IIKIRA+ E I +SEEAL +L E+G KT+LRY+VQLL PA+++A
Sbjct: 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN 420
Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
G +E+EHVE+ E F D K S
Sbjct: 421 GKDSIEKEHVEEISELFYDAKSS 443
>gi|6755382 RuvB-like protein 2 [Mus musculus] >gi|4521249|dbj|BAA76297.1|
(AB013912) DNA helicase [Mus musculus]
Length = 463
Score = 391 bits (995), Expect = e-108
Identities = 195/435 (44%), Positives = 301/435 (68%), Gaps = 13/435 (2%)
Query: 11 KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
+ ER+GAHSHIRGLGLD+ + + GMVGQ+ AR AAG+ +++I++GK+AG+ +L+ G
Sbjct: 18 RIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAG 77
Query: 71 PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
G+GKTAIAMG+A+ LG D PF I+GSEI+S E+ KTE L QA RR+IGVRI EE ++
Sbjct: 78 QPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEI 137
Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
EG V ++++ R + +TLKT + + G ++ L + ++ GDV
Sbjct: 138 IEGEVVEIQIDRPATGTGSKVGK-----LTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192
Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
I ID TG++S++G + ++ + + + K V+ P G + K KE +TV+LH++DV+N+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINS 252
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R G +L G EI E+RE+++ V +W EEGKA ++PGVLFIDE HMLDIE+FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RA+E+++AP+LI+ATNRG+T+IRGT ++PHGIP+D+LDRLLI++T PY +++ ++I++
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILR 372
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
IR +EE +E+SE+A L +G +TSLRYA+QL+ AS++ G V+ + +++
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 432
Query: 423 FADVKRSIAFVEKLE 437
F D RS ++++ +
Sbjct: 433 FLDESRSTQYMKEYQ 447
>gi|5730023 RuvB (E coli homolog)-like 2 [Homo sapiens]
>gi|11427537|ref|XP_009417.1| RuvB (E coli homolog)-like
2 [Homo sapiens] >gi|11280157|pir||T46313 hypothetical
protein DKFZp434K1011.1 - human
>gi|4587311|dbj|BAA76708.1| (AB024301) RuvB-like DNA
helicase TIP49b [Homo sapiens]
>gi|5020422|gb|AAD38073.1|AF155138_1 (AF155138) RUVBL2
protein [Homo sapiens] >gi|5326998|emb|CAB46270.1|
(Y18417) erythrocyte cytosolic protein of 51 kDa, ECP-51
[Homo sapiens] >gi|6807657|emb|CAB66677.1| (AL136743)
hypothetical protein [Homo sapiens]
>gi|9367027|gb|AAF87087.1|AF124607_1 (AF124607) Reptin52
[Homo sapiens]
Length = 463
Score = 391 bits (994), Expect = e-108
Identities = 195/435 (44%), Positives = 301/435 (68%), Gaps = 13/435 (2%)
Query: 11 KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
+ ER+GAHSHIRGLGLD+ + + GMVGQ+ AR AAG+ +++I++GK+AG+ +L+ G
Sbjct: 18 RIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAG 77
Query: 71 PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
G+GKTAIAMG+A+ LG D PF I+GSEI+S E+ KTE L QA RR+IGVRI EE ++
Sbjct: 78 QPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEI 137
Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
EG V ++++ R + +TLKT + + G ++ L + ++ GDV
Sbjct: 138 IEGEVVEIQIDRPATGTGSKVGK-----LTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192
Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
I ID TG++S++G + ++ + + + K V+ P G + K KE +TV+LH++DV+N+
Sbjct: 193 ITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINS 252
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R G +L G EI E+RE+++ V +W EEGKA ++PGVLFIDE HMLDIE+FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RA+E+++AP+LI+ATNRG+T+IRGT ++PHGIP+D+LDRLLI++T PY +++ ++I++
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 372
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
IR +EE +E+SE+A L +G +TSLRYA+QL+ AS++ G V+ + +++
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 432
Query: 423 FADVKRSIAFVEKLE 437
F D RS ++++ +
Sbjct: 433 FLDESRSTQYMKEYQ 447
>pir||T46049 RuvB DNA helicase-like protein - Arabidopsis thaliana
>gi|6723428|emb|CAB66921.1| (AL132965) RuvB DNA
helicase-like protein [Arabidopsis thaliana]
Length = 473
Score = 390 bits (990), Expect = e-107
Identities = 208/435 (47%), Positives = 293/435 (66%), Gaps = 11/435 (2%)
Query: 11 KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
+ ER+GAHSHIRGLGLD + + + +GMVGQIKAR+AAG+ ++LI+ GK++G+ IL+ G
Sbjct: 14 RIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGKISGRAILIAG 73
Query: 71 PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
G+GK AIAMGIA+ LG++ PF I+GSEI+S E+ KTE L QA R+AIGVRI EE V
Sbjct: 74 QPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFRKAIGVRIKEETDV 133
Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
EG V + + R P + V ++ IT+KT D + G ++ L + ++ GDV
Sbjct: 134 IEGEVVTISIDR---PASSGGSVKKTGKITMKTTDMESNFDLGWKLIEPLDKEKVQSGDV 190
Query: 191 IQIDAETGRVSRIGTTKEEEGLFF-----RKKVELPSGPVLKIKEFTYTVTLHDLDVVNA 245
I +D G+++++G + F K V+ P G + K KE ++VTLH++DV+N+
Sbjct: 191 IVLDRFCGKITKLGRSFTRSRDFDVMGSKTKFVQCPEGELEKRKEVLHSVTLHEIDVINS 250
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R G +L G EI E RE+ D V +W EEGKA +VPGVLFIDE HMLDIE FSFL
Sbjct: 251 RTQGYLALFTGDTGEIRSETREQSDTKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 310
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RA+EN+++PIL++ATNRGMT IRGT+ + HGIP+D LDRLLII T+PY ++EIR I++
Sbjct: 311 NRALENDMSPILVVATNRGMTTIRGTNQISAHGIPIDFLDRLLIITTQPYTQDEIRNILE 370
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKAKEY 422
IR +EE +E++EEA + L +G TSLRYA+ L+ A++ GK VE + +E+
Sbjct: 371 IRCQEEDVEMNEEAKQLLTLIGCNTSLRYAIHLINAAALACLKRKGKVVEIQDIERVYRL 430
Query: 423 FADVKRSIAFVEKLE 437
F D KRS+ ++ + E
Sbjct: 431 FLDTKRSMQYLVEHE 445
>pir||T32710 hypothetical protein T22D1.10 - Caenorhabditis elegans
>gi|9798160|gb|AAF98631.1| (AF039052) contains
similarity to ATPases [Caenorhabditis elegans]
Length = 448
Score = 380 bits (966), Expect = e-104
Identities = 199/428 (46%), Positives = 283/428 (65%), Gaps = 13/428 (3%)
Query: 10 IKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLV 69
+K ER HSHI GLGL++ +A+++ GMVGQ+ AR+AAG+ VK+I++GK+AG+ +L+
Sbjct: 13 VKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAGRALLVT 72
Query: 70 GPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERK 129
G G+GKTAIA+ I++ELGED PFV I SEIYS E+ KTE L QA RRA+G++I EE +
Sbjct: 73 GEPGAGKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQIKEETE 132
Query: 130 VYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGD 189
V EG V +EV R+ + P + +T++T D + G ++ L+ + GD
Sbjct: 133 VLEGEVISLEVDRSANGMGPKVGK-----LTMRTTDMETIYDLGSKMVDACLKEKVMPGD 187
Query: 190 VIQIDAETGRVSRIGTTKEEEGLFFR-----KKVELPSGPVLKIKEFTYTVTLHDLDVVN 244
VIQ+D +GRV+R+G + + K V+ P G + K +E +TV LHD+DV+N
Sbjct: 188 VIQVDKASGRVTRLGRSFNRSHDYDAMGPKVKLVQCPDGEIQKRRETVHTVCLHDIDVIN 247
Query: 245 ARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSF 304
+R G +L G EI E+R+++++ V +W EEGKA VPGVLFIDE HMLDIE FSF
Sbjct: 248 SRTQGYVALFSGDTGEIKAEVRDQINKKVLEWREEGKAKFVPGVLFIDEAHMLDIECFSF 307
Query: 305 LARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREII 364
L RA+E EL+P++I+ATNR + K+RGTD+E+ HGIP D LDR+LIIN PY KE+ +I+
Sbjct: 308 LNRAIEGELSPLIIMATNRLIEKVRGTDVESAHGIPSDFLDRMLIINAIPYTKEDTAKIL 367
Query: 365 KIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASII---AGGKRVEREHVEKAKE 421
IR EE ++L AL+ L +L E TSLRY + L+A + +I + + V +H+ A
Sbjct: 368 SIRCDEEGVKLQPTALDLLVKLQEATSLRYCIHLIAASEVIRIRSKAEIVTTDHIGSAYR 427
Query: 422 YFADVKRS 429
F D KRS
Sbjct: 428 LFFDTKRS 435
>gb|AAF43412.1|AF233279_1 (AF233279) reptin [Drosophila melanogaster]
>gi|7293815|gb|AAF49182.1| (AE003517) reptin gene
product [Drosophila melanogaster]
Length = 481
Score = 379 bits (963), Expect = e-104
Identities = 195/442 (44%), Positives = 295/442 (66%), Gaps = 13/442 (2%)
Query: 4 IEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAG 63
IE + ER+GAHSHIRGLGLD+ +A+ + GMVGQ AR AAG+ V+++++GK+AG
Sbjct: 7 IEVRDVTRIERIGAHSHIRGLGLDDVLEARLVSQGMVGQKDARRAAGVVVQMVREGKIAG 66
Query: 64 KGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVR 123
+ ILL G +GKTAIA+G+A+ LG + PF +SGSEIYS E+ KTE L QALR++IGVR
Sbjct: 67 RCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVR 126
Query: 124 ISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLEL 183
I EE ++ EG V ++++ R + +TLKT + + G +I ++
Sbjct: 127 IKEETEIIEGEVVEIQIERPASGTGQKVGK-----VTLKTTEMETNYDLGNKIIECFMKE 181
Query: 184 GIEEGDVIQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLH 238
I+ GDVI ID +G+V+++G + ++ + + + V+ P G + K KE +TVTLH
Sbjct: 182 KIQAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLH 241
Query: 239 DLDVVNARAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLD 298
++DV+N+R G +L G EI E+R++++ V +W EEGKA + PGVLFIDE HMLD
Sbjct: 242 EIDVINSRTHGFLALFSGDTGEIKQEVRDQINNKVLEWREEGKAEINPGVLFIDEVHMLD 301
Query: 299 IEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKE 358
IE FSFL RA+E+++AP++++ATNRG+T+IRGT+ +PHGIP+D+LDR++II T PY ++
Sbjct: 302 IECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEK 361
Query: 359 EIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR---VEREH 415
E++EI+KIR +EE + +AL L + TSLRYA+QL+ A+++ ++ V E
Sbjct: 362 EVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTED 421
Query: 416 VEKAKEYFADVKRSIAFVEKLE 437
V+K F D RS +++ +
Sbjct: 422 VKKVYSLFLDENRSSKILKEYQ 443
>emb|CAB76908.1| (AJ276264) putative Ruv DNA-helicase [Cicer arietinum]
Length = 458
Score = 376 bits (956), Expect = e-103
Identities = 209/448 (46%), Positives = 290/448 (64%), Gaps = 13/448 (2%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M + E T K +RV H+HI+GLGL+ +GKA G VGQ +AREA G+ V +I+Q K
Sbjct: 4 MKIEEVQSTTKKQRVATHTHIKGLGLEVSGKALPFASGFVGQAEAREACGLVVDMIRQKK 63
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
+AGK +LL GP G+GKTA+A+GI +ELG VPF + GSE+YS EVKKTE L + RRAI
Sbjct: 64 MAGKALLLAGPPGTGKTALALGICQELGTKVPFCPMVGSEVYSTEVKKTEVLMENFRRAI 123
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
G+RI E ++VYEG V ++ T Y + VII LKT K ++ I L
Sbjct: 124 GLRIKENKEVYEGEVTELSPEETESLTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDAL 183
Query: 181 LELGIEEGDVIQIDAETGRVSRIGTTKE---EEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
++ + GDVI I+A +G V R+G + E L + V LP G V K KE VTL
Sbjct: 184 IKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTL 243
Query: 238 HDLDVVNARA-GGIFSLIFGGGM------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
HDLD NAR GG L G M EI D++R+ +++ V ++I+EG A LVPGVLF
Sbjct: 244 HDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLF 303
Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLII 350
IDE HMLD+E FS+L RA+E+ L+PI+I ATNRG+ +RGTD+ +PHGIP+D+LDRL+II
Sbjct: 304 IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICTVRGTDMTSPHGIPVDLLDRLVII 363
Query: 351 NTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---G 407
T+ Y EI +I+ IRA+ E++ + EE+L +L E+G++TSLR+AVQLL+PAS++A G
Sbjct: 364 RTQTYGPAEIIQILAIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASVVAKING 423
Query: 408 GKRVEREHVEKAKEYFADVKRSIAFVEK 435
+ + +E+ + D K S +++
Sbjct: 424 RDNICKADLEEICSLYLDAKSSAKLLQE 451
>dbj|BAB08331.1| (AB007651) Ruv DNA-helicase-like protein [Arabidopsis thaliana]
Length = 458
Score = 374 bits (949), Expect = e-102
Identities = 208/440 (47%), Positives = 288/440 (65%), Gaps = 14/440 (3%)
Query: 4 IEELP-TIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLA 62
IEE+ T K +R+ H+HI+GLGL+ G + G VGQ++AREAAG+ V +IKQ K+A
Sbjct: 6 IEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKKMA 65
Query: 63 GKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGV 122
GK +LL GP G+GKTA+A+GI++ELG VPF + GSE+YS+EVKKTE L + RRAIG+
Sbjct: 66 GKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGL 125
Query: 123 RISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLE 182
RI E ++VYEG V ++ T Y + V+ITLKT K ++ I L++
Sbjct: 126 RIKETKEVYEGEVTELSPEETESLTGGYGKSISHVVITLKTVKGTKHLKLDPTIYDALIK 185
Query: 183 LGIEEGDVIQIDAETGRVSRIGTTKE---EEGLFFRKKVELPSGPVLKIKEFTYTVTLHD 239
+ GDVI I+A +G V R+G + E L + V LP G V K KE VTL D
Sbjct: 186 EKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLQD 245
Query: 240 LDVVNARA-GGIFSLIFGGGM------EINDEIRERVDQTVKQWIEEGKATLVPGVLFID 292
LD NAR GG L G M EI D++R+ +++ V ++I+EG A LVPGVLFID
Sbjct: 246 LDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFID 305
Query: 293 ECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINT 352
E HMLD+E FS+L RA+E+ L+PI+I ATNRG+ +RGTD+ +PHG+P+D+LDRL+II T
Sbjct: 306 EVHMLDMECFSYLNRALESSLSPIVIFATNRGVCNVRGTDMPSPHGVPIDLLDRLVIIRT 365
Query: 353 EPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGK 409
+ Y E+ +II IRA+ E++ + EE L L E+G++TSLR+AVQLL+PASI+A G
Sbjct: 366 QIYDPSEMIQIIAIRAQVEELTVDEECLVLLGEIGQRTSLRHAVQLLSPASIVAKMNGRD 425
Query: 410 RVEREHVEKAKEYFADVKRS 429
+ + +E+ + D K S
Sbjct: 426 NICKADIEEVTSLYLDAKSS 445
>gb|AAD34041.1|AF151804_1 (AF151804) CGI-46 protein [Homo sapiens]
Length = 442
Score = 370 bits (941), Expect = e-101
Identities = 187/408 (45%), Positives = 281/408 (68%), Gaps = 10/408 (2%)
Query: 11 KFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVG 70
+ ER+GAHSHIRGLGLD+ + + GMVGQ+ AR AAG+ +++I++GK+AG+ +L+ G
Sbjct: 18 RIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAG 77
Query: 71 PTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKV 130
G+GKTAIAMG+A+ LG D PF I+GSEI+S E+ KTE L QA RR+IGVRI EE ++
Sbjct: 78 QPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEI 137
Query: 131 YEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDV 190
EG V ++++ R + +TLKT + + G ++ L + ++ GDV
Sbjct: 138 IEGEVVEIQIDRPATGTGSKVGK-----LTLKTTEMETIYDLGTKMIESLTKDKVQAGDV 192
Query: 191 IQIDAETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNA 245
I ID TG++S++G + + + + + K V+ P G + K KE +TV+LH++DV+N+
Sbjct: 193 ITIDKATGKISKLGRSFTRARNYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINS 252
Query: 246 RAGGIFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFL 305
R G +L G EI E+RE+++ V +W EEGKA ++PGVLFIDE HMLDIE+FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312
Query: 306 ARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIK 365
RA+E+++AP+LI+ATNRG+T+IRGT ++PHGIP+D+LDRLLI++T PY +++ ++I++
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 372
Query: 366 IRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKRVER 413
IR +EE +E+SE+A L +G +TSLR + AG RV++
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRTPSSSSQLPAWCAGNARVQK 420
>gi|6320396 RUVB-like protein; Rvb1p [Saccharomyces cerevisiae]
>gi|1077539|pir||S52698 hypothetical protein YDR190c -
yeast (Saccharomyces cerevisiae)
>gi|755784|emb|CAA88704.1| (Z48784) unknown
[Saccharomyces cerevisiae]
Length = 463
Score = 369 bits (937), Expect = e-101
Identities = 205/435 (47%), Positives = 282/435 (64%), Gaps = 14/435 (3%)
Query: 14 RVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTG 73
R AH+HI+GLGLDE+G AK + G VGQI+AREA G+ V LIK K++G+ ILL G
Sbjct: 23 RTAAHTHIKGLGLDESGVAKRVEGGFVGQIEAREACGVIVDLIKAKKMSGRAILLAGGPS 82
Query: 74 SGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEG 133
+GKTA+A+ I++ELG VPF + GSE+YS EVKKTE L + RRAIG+RI E ++VYEG
Sbjct: 83 TGKTALALAISQELGPKVPFCPLVGSELYSVEVKKTETLMENFRRAIGLRIKETKEVYEG 142
Query: 134 MVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDVIQI 193
V ++ +P Y + VI+ LK+ KT+R I + + GDVI I
Sbjct: 143 EVTELTPEDAENPLGGYGKTISHVIVGLKSAKGTKTLRLDPTIYESIQREKVSIGDVIYI 202
Query: 194 DAETGRVSRIGTT---KEEEGLFFRKKVELPSGPVLKIKEFTYTVTLHDLDVVNARAGGI 250
+A TG V R+G + E L + V LP G V K KE VTLHDLDV NAR G
Sbjct: 203 EANTGAVKRVGRSDAYATEFDLETEEYVPLPKGEVHKKKEIVQDVTLHDLDVANARPQGG 262
Query: 251 FSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFS 303
+I G EI +++R+ V++ V ++I++G A L+PGVLFIDE +MLDIE F+
Sbjct: 263 QDVISMMGQLLKPKKTEITEKLRQEVNKVVAKYIDQGVAELIPGVLFIDEVNMLDIEIFT 322
Query: 304 FLARAMENELAPILILATNRGMTKIRGT-DLEAPHGIPLDMLDRLLIINTEPYKKEEIRE 362
+L +A+E+ +AP+++LA+NRGMT +RGT D+ +PHG+P D++DRLLI+ T PY K+EIR
Sbjct: 323 YLNKALESNIAPVVVLASNRGMTTVRGTEDVISPHGVPPDLIDRLLIVRTLPYDKDEIRT 382
Query: 363 IIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA---GGKRVEREHVEKA 419
II+ RA E++++ AL+ LA +G +TSLRYA+QLLAP I+A K + V +A
Sbjct: 383 IIERRATVERLQVESSALDLLATMGTETSLRYALQLLAPCGILAQTSNRKEIVVNDVNEA 442
Query: 420 KEYFADVKRSIAFVE 434
K F D KRS +E
Sbjct: 443 KLLFLDAKRSTKILE 457
>gi|6325021 RUVB-like protein; Rvb2p [Saccharomyces cerevisiae]
>gi|2132242|pir||S61029 hypothetical protein YPL235w -
yeast (Saccharomyces cerevisiae)
>gi|1061254|emb|CAA91609.1| (Z67751) putative protein
[Saccharomyces cerevisiae] >gi|1181253|emb|CAA64252.1|
(X94561) ATP/GTP binding site motif A (P-loop)
[Saccharomyces cerevisiae] >gi|1370486|emb|CAA97952.1|
(Z73591) ORF YPL235w [Saccharomyces cerevisiae]
Length = 471
Score = 367 bits (931), Expect = e-100
Identities = 188/431 (43%), Positives = 297/431 (68%), Gaps = 14/431 (3%)
Query: 15 VGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTGS 74
+ AHSHI GLGLDEN + + +GMVGQ++AR AAG+ +K+++ G +AG+ +L+ GP +
Sbjct: 20 IAAHSHITGLGLDENLQPRPTSEGMVGQLQARRAAGVILKMVQNGTIAGRAVLVAGPPST 79
Query: 75 GKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEGM 134
GKTA+AMG+++ LG+DVPF I+GSEI+S E+ KTE L QA R++IG++I EE ++ EG
Sbjct: 80 GKTALAMGVSQSLGKDVPFTAIAGSEIFSLELSKTEALTQAFRKSIGIKIKEETELIEGE 139
Query: 135 VEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQLLELGIEEGDVIQID 194
V ++++ R+ + + +T+KT D + G ++ L + + GDVI ID
Sbjct: 140 VVEIQIDRSITGGHKQGK------LTIKTTDMETIYELGNKMIDGLTKEKVLAGDVISID 193
Query: 195 AETGRVSRIGTT----KEEEGLFFRKK-VELPSGPVLKIKEFTYTVTLHDLDVVNARAGG 249
+G+++++G + ++ + + + V+ P G + K K +TV+LH++DV+N+R G
Sbjct: 194 KASGKITKLGRSFARSRDYDAMGADTRFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQG 253
Query: 250 IFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFLARAM 309
+L G EI E+R++++ V +W EEGKA +VPGVLFIDE HMLDIE FSF+ RA+
Sbjct: 254 FLALFTGDTGEIRSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSFINRAL 313
Query: 310 ENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIKIRAK 369
E+E API+++ATNRG++K RGT+ ++PHG+PLD+LDR +II T+ Y ++EI+ I+ IRA+
Sbjct: 314 EDEFAPIVMMATNRGVSKTRGTNYKSPHGLPLDLLDRSIIITTKSYNEQEIKTILSIRAQ 373
Query: 370 EEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIAGGKR---VEREHVEKAKEYFADV 426
EE++ELS +AL+ L + G +TSLRY+ L++ A IA ++ VE E V++A F D
Sbjct: 374 EEEVELSSDALDLLTKTGVETSLRYSSNLISVAQQIAMKRKNNTVEVEDVKRAYLLFLDS 433
Query: 427 KRSIAFVEKLE 437
RS+ +V++ E
Sbjct: 434 ARSVKYVQENE 444
>gb|AAF54514.1| (AE003686) pontin gene product [alt 2] [Drosophila melanogaster]
Length = 456
Score = 365 bits (928), Expect = e-100
Identities = 206/443 (46%), Positives = 282/443 (63%), Gaps = 14/443 (3%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M + E T++ +R+ AHSH++GLGLDE G A G+VGQ AREAAGI V LIK K
Sbjct: 1 MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAGIVVDLIKSKK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
+AG+ +LL GP G+GKTAIA+ IA+ELG VPF + GSE++S E+KKTE L + RR+I
Sbjct: 61 MAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSI 120
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
G+RI E ++VYEG V ++ T +P Y + +V+I LKT K ++ I L
Sbjct: 121 GLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDAL 180
Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
+ +E GDVI I+A +G V R G T E L + V LP G V K KE VTL
Sbjct: 181 QKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTL 240
Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
HDLDV NAR G ++ G EI D++R +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF 300
Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRG-TDLEAPHGIPLDMLDRLLI 349
IDE HMLD+E F++L +++E+ +API+I ATNRG IRG TD+ +PHGIPLD+LDRLLI
Sbjct: 301 IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLI 360
Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPA---SIIA 406
I T Y ++ +IIK+RA+ E ++L E A L+E+G ++LRYAVQLL PA +
Sbjct: 361 IRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVN 420
Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
G ++ ++ +E F D KRS
Sbjct: 421 GRNQISKDDIEDVHSLFLDAKRS 443
>gb|AAF43411.1|AF233278_1 (AF233278) pontin [Drosophila melanogaster]
Length = 456
Score = 361 bits (916), Expect = 1e-98
Identities = 204/443 (46%), Positives = 281/443 (63%), Gaps = 14/443 (3%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M + E T++ +R+ AHSH++GLGLDE G A G+VGQ AREAAGI V LIK K
Sbjct: 1 MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAGIVVDLIKSKK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
+AG+ +LL G G+GKTAIA+ IA+ELG VPF + GSE++S E+KKTE L + RR+I
Sbjct: 61 MAGRALLLAGAPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSI 120
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
G+RI E ++VYEG V ++ T +P Y + +V+I LKT K ++ I L
Sbjct: 121 GLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDAL 180
Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
+ +E GDVI I+A +G V R G T E L + V LP G V K KE VTL
Sbjct: 181 QKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTL 240
Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
HDLDV NAR G ++ G EI D++R +++ V ++I++G A LVPGVLF
Sbjct: 241 HDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF 300
Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRG-TDLEAPHGIPLDMLDRLLI 349
IDE HMLD++ F++L +++E+ +API+I ATNRG IRG TD+ +PHGIPLD+LDRLLI
Sbjct: 301 IDEIHMLDLKTFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLI 360
Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPA---SIIA 406
I T Y ++ +IIK+RA+ E ++L E A L+E+G ++LRYAVQLL PA +
Sbjct: 361 IRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVN 420
Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
G ++ ++ +E F D KRS
Sbjct: 421 GRNQISKDDIEDVHSLFLDAKRS 443
>gb|AAF54515.1| (AE003686) pontin gene product [alt 1] [Drosophila melanogaster]
Length = 396
Score = 307 bits (777), Expect = 2e-82
Identities = 174/383 (45%), Positives = 242/383 (62%), Gaps = 14/383 (3%)
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALRRAI 120
+AG+ +LL GP G+GKTAIA+ IA+ELG VPF + GSE++S E+KKTE L + RR+I
Sbjct: 1 MAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSI 60
Query: 121 GVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIAYQL 180
G+RI E ++VYEG V ++ T +P Y + +V+I LKT K ++ I L
Sbjct: 61 GLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDAL 120
Query: 181 LELGIEEGDVIQIDAETGRVSRIG---TTKEEEGLFFRKKVELPSGPVLKIKEFTYTVTL 237
+ +E GDVI I+A +G V R G T E L + V LP G V K KE VTL
Sbjct: 121 QKEKVEVGDVIYIEANSGAVKRQGRSDTFATEFDLETEEYVPLPKGDVHKKKEVIQDVTL 180
Query: 238 HDLDVVNARAGGIFSLIFGGGM-------EINDEIRERVDQTVKQWIEEGKATLVPGVLF 290
HDLDV NAR G ++ G EI D++R +++ V ++I++G A LVPGVLF
Sbjct: 181 HDLDVANARPQGGQDVLSMMGQLMKPKKTEITDKLRMEINKVVNKYIDQGIAELVPGVLF 240
Query: 291 IDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRG-TDLEAPHGIPLDMLDRLLI 349
IDE HMLD+E F++L +++E+ +API+I ATNRG IRG TD+ +PHGIPLD+LDRLLI
Sbjct: 241 IDEIHMLDLETFTYLHKSLESPIAPIVIFATNRGRCVIRGTTDIVSPHGIPLDLLDRLLI 300
Query: 350 INTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPA---SIIA 406
I T Y ++ +IIK+RA+ E ++L E A L+E+G ++LRYAVQLL PA +
Sbjct: 301 IRTLLYSTADMEQIIKLRAQTEGLQLEENAFTRLSEIGTSSTLRYAVQLLTPAHQMCKVN 360
Query: 407 GGKRVEREHVEKAKEYFADVKRS 429
G ++ ++ +E F D KRS
Sbjct: 361 GRNQISKDDIEDVHSLFLDAKRS 383
>pir||T19534 hypothetical protein C27H6.2 - Caenorhabditis elegans
>gi|3874559|emb|CAB02793.1| (Z81042) predicted using
Genefinder~Similarity to Yeast hypothetical 50.5 KD
protein (TR:G755784)~cDNA EST EMBL:T01580 comes from
this gene~cDNA EST EMBL:T01921 comes from this gene~cDNA
EST yk61b3.3 comes from this gene~cDNA EST yk81a11.3
comes from t>
Length = 458
Score = 302 bits (766), Expect = 4e-81
Identities = 176/449 (39%), Positives = 265/449 (58%), Gaps = 30/449 (6%)
Query: 1 MAVIEEL-PTIK-FERVGAHSHIRGLGLD-ENGKAKFIGDGMVGQIKAREAAGIAVKLIK 57
+A IEE+ PT K +R+ AHSH++GLG+D E +A + G VGQ AR AA I V +I+
Sbjct: 17 LAPIEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIR 76
Query: 58 QGKLAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFLKQALR 117
+AG+ +L+ GP +GKTAIA+ +++ELG+ VPFV + SE++S EVKKTE L ++ R
Sbjct: 77 LKCMAGRAVLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFR 136
Query: 118 RAIGVRISEERKVYEGMVEKMEVRRTRHPFNPYIEVPESVIITLKTKDDKKTIRAGREIA 177
RAIG+R+ E + VYEG V ++ + ++++LKT K ++ I
Sbjct: 137 RAIGLRVKETKDVYEGEVTELSPVEASDNSGMGKTISH-LVLSLKTAKGSKQLKLDPSIY 195
Query: 178 YQLLELGIEEGDVIQIDAETGRVSRIGTTK---EEEGLFFRKKVELPSGPVLKIKEFTYT 234
+L+ +E GDVI I+A +G V R+G E L + V +P G V K K+
Sbjct: 196 DSILKQRVEVGDVIYIEANSGIVKRVGRCDVYASEFDLEADEFVPMPKGDVRKSKDIVQN 255
Query: 235 VTLHDLDVVNARAGG--------IFSLIFGGGMEINDEIRERVDQTVKQWIEEGKATLVP 286
V+LHDLD+ NAR G + L+ E+ D +R +++ V ++IE G A L+P
Sbjct: 256 VSLHDLDIANARPQGRQGDVSNIVSQLMTPKKTEVTDRLRSEINKVVNEYIESGVAELMP 315
Query: 287 GVLFIDECHMLDIEAFSFLARAMENELAPILILATNRGMTKIRGTDLEAPHGIPLDMLDR 346
GVLFIDE HMLD+E F++L RA+E+ +AP+++ ATNRG T +RG +APHGIP +MLDR
Sbjct: 316 GVLFIDEVHMLDVECFTYLYRALESPMAPVVVFATNRGTTTVRGLGDKAPHGIPPEMLDR 375
Query: 347 LLIINTEPYKKEEIREIIKIRAKEEKIELSEEALEYLAELGEKTSLRYAVQLLAPASIIA 406
L+II T Y +E+IR+I+ R + E ++ E+A + L L +T
Sbjct: 376 LMIIPTMKYNEEDIRKILVHRTEAENVQFEEKAFDLLTRLCAQT---------------C 420
Query: 407 GGKRVEREHVEKAKEYFADVKRSIAFVEK 435
G + +E E V++ + F D S+ E+
Sbjct: 421 GREVIEVEDVDRCTKLFMDRGESLKKAEE 449
>pir||T46873 hypothetical protein [imported] - Sulfolobus solfataricus
(fragment) >gi|1706951|gb|AAB38088.1| (U52110) ATPase
[Sulfolobus solfataricus]
Length = 112
Score = 155 bits (388), Expect = 9e-37
Identities = 74/112 (66%), Positives = 91/112 (81%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
MA I E+ I+ E+ HSHI GLGLDE GKAKFI DG+VGQ++AREA+GI V+LI+QGK
Sbjct: 1 MAQIREIKKIEREKASIHSHITGLGLDEKGKAKFIADGLVGQVEAREASGIVVQLIRQGK 60
Query: 61 LAGKGILLVGPTGSGKTAIAMGIARELGEDVPFVQISGSEIYSAEVKKTEFL 112
+AGKGIL VGP G+GKTA+A+ IA+ELGED PF I+ SE+YS E+KKTE L
Sbjct: 61 MAGKGILFVGPPGTGKTALAVAIAKELGEDTPFTTINASEVYSTELKKTEIL 112
>gi|11432495 RuvB (E coli homolog)-like 1 [Homo sapiens]
Length = 418
Score = 153 bits (384), Expect = 3e-36
Identities = 74/132 (56%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
Query: 263 DEIRERVDQTVKQWIEEGKATLVPGVLFIDECHMLDIEAFSFLARAMENELAPILILATN 322
D++R +++ V ++I++G A LVPGVLF+DE HMLDIE F++L RA+E+ +API+I A+N
Sbjct: 181 DKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASN 240
Query: 323 RGMTKIRGT-DLEAPHGIPLDMLDRLLIINTEPYKKEEIREIIKIRAKEEKIELSEEALE 381
RG IRGT D+ +PHGIPLD+LDR++II T Y +E+++IIKIRA+ E I +SEEAL
Sbjct: 241 RGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALN 300
Query: 382 YLAELGEKTSLR 393
+L E+G KT+LR
Sbjct: 301 HLGEIGTKTTLR 312
Score = 86.2 bits (210), Expect = 7e-16
Identities = 40/76 (52%), Positives = 54/76 (70%)
Query: 1 MAVIEELPTIKFERVGAHSHIRGLGLDENGKAKFIGDGMVGQIKAREAAGIAVKLIKQGK 60
M + E T K +R+ +HSH++GLGLDE+G AK G+VGQ AREA G+ V+LIK K
Sbjct: 1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK 60
Query: 61 LAGKGILLVGPTGSGK 76
+AG+ +LL GP G+GK
Sbjct: 61 MAGRAVLLAGPPGTGK 76
>emb|CAC02848.1| (AL390114) probable erythrocyte cytosolic protein of 54 kda, ecp-54
[Leishmania major]
Length = 118
Score = 126 bits (313), Expect = 5e-28
Identities = 64/114 (56%), Positives = 80/114 (70%)
Query: 33 KFIGDGMVGQIKAREAAGIAVKLIKQGKLAGKGILLVGPTGSGKTAIAMGIARELGEDVP 92
K I DG VGQ KAREAAGIAV+LI+ K+A + +L GP G+GKTA+A+GIA ELG VP
Sbjct: 3 KHIADGFVGQEKAREAAGIAVELIRSKKMASRALLFAGPPGTGKTALALGIAXELGXXVP 62
Query: 93 FVQISGSEIYSAEVKKTEFLKQALRRAIGVRISEERKVYEGMVEKMEVRRTRHP 146
F + GSE+YSAEV KTE L + RRAIG+RI + VY G V ++ T +P
Sbjct: 63 FCPMVGSEVYSAEVXKTEVLMENFRRAIGLRIKXXKDVYXGXVTELXAXETDNP 116
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152684272
Number of Sequences: 2977
Number of extensions: 6541289
Number of successful extensions: 32373
Number of sequences better than 1.0e-10: 26
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32281
Number of HSP's gapped (non-prelim): 27
length of query: 441
length of database: 189,106,746
effective HSP length: 60
effective length of query: 381
effective length of database: 153,197,526
effective search space: 58368257406
effective search space used: 58368257406
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)