BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2110 (PAB2110) DE:Hypothetical protein
(218 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75150 hypothetical protein PAB2110 - Pyrococcus abyssi (st... 430 e-120
pir||E71190 hypothetical protein PH1797 - Pyrococcus horikoshii ... 363 e-100
gi|11499154 conserved hypothetical protein [Archaeoglobus fulgid... 108 4e-23
pir||G70338 conserved hypothetical protein aq_423 - Aquifex aeol... 101 8e-21
pir||E64441 hypothetical protein MJ1134 - Methanococcus jannasch... 90 1e-17
gb|AAG18912.1| (AE004993) Vng0340c [Halobacterium sp. NRC-1] 78 1e-13
emb|CAC11917.1| (AL445065) conserved hypothetical protein [Therm... 69 5e-11
>pir||A75150 hypothetical protein PAB2110 - Pyrococcus abyssi (strain Orsay)
>gi|5457790|emb|CAB49280.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 218
Score = 430 bits (1093), Expect = e-120
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MERFEPEVTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAAS 60
MERFEPEVTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAAS
Sbjct: 1 MERFEPEVTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAAS 60
Query: 61 ILVRMKSEALLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEA 120
ILVRMKSEALLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEA
Sbjct: 61 ILVRMKSEALLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEA 120
Query: 121 ERRKPRKKKKVEIEEEIFVVDDFRVDIEKHVNRLYEIVKEIYNETGKPIRFWDLVFDVDP 180
ERRKPRKKKKVEIEEEIFVVDDFRVDIEKHVNRLYEIVKEIYNETGKPIRFWDLVFDVDP
Sbjct: 121 ERRKPRKKKKVEIEEEIFVVDDFRVDIEKHVNRLYEIVKEIYNETGKPIRFWDLVFDVDP 180
Query: 181 KIIARTFLYLLFLENMGKVEMIQEEPFGEILVVPVKIS 218
KIIARTFLYLLFLENMGKVEMIQEEPFGEILVVPVKIS
Sbjct: 181 KIIARTFLYLLFLENMGKVEMIQEEPFGEILVVPVKIS 218
>pir||E71190 hypothetical protein PH1797 - Pyrococcus horikoshii
>gi|3258233|dbj|BAA30916.1| (AP000007) 213aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 213
Score = 363 bits (922), Expect = e-100
Identities = 181/209 (86%), Positives = 199/209 (94%)
Query: 7 EVTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMK 66
E+TPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMK
Sbjct: 5 EITPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMK 64
Query: 67 SEALLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEAERRKPR 126
SEALLR +EE N+ +EE+I+V+VDPLVPPLRRVERYYTLDDLIEALMDALEEAE+RKP+
Sbjct: 65 SEALLRGEEEENKRGEEEKIKVDVDPLVPPLRRVERYYTLDDLIEALMDALEEAEKRKPK 124
Query: 127 KKKKVEIEEEIFVVDDFRVDIEKHVNRLYEIVKEIYNETGKPIRFWDLVFDVDPKIIART 186
KKKKVEI+EEIFVVDDFRVDIEK+V LY++VK+IY +T PI+FWDLV DV+PKIIART
Sbjct: 125 KKKKVEIDEEIFVVDDFRVDIEKYVEELYKVVKKIYEKTKTPIKFWDLVPDVEPKIIART 184
Query: 187 FLYLLFLENMGKVEMIQEEPFGEILVVPV 215
FLYLLFLENMG+VEMIQEEPFGEILVVPV
Sbjct: 185 FLYLLFLENMGRVEMIQEEPFGEILVVPV 213
>gi|11499154 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483141|pir||F69444 conserved hypothetical protein
AF1559 - Archaeoglobus fulgidus
>gi|2649003|gb|AAB89689.1| (AE000995) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 224
Score = 108 bits (268), Expect = 4e-23
Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 29/221 (13%)
Query: 17 LVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMKSEALLRE--- 73
+ K G++DPWNID+VD+T++++K + + ++LDLR+S R +L A+ILVRMK+EA+ E
Sbjct: 1 MAKRGEIDPWNIDVVDVTDRFLKRIEDAKKLDLRVSGRVLLYAAILVRMKAEAITLEALG 60
Query: 74 -DEER--------------------NEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEA 112
DEE E ++EE V ++ L RRV + TL DLI+
Sbjct: 61 GDEEEELEMYDYDSFYFLDEPLEFPEEVDEEELDEVILEALTSMRRRVRKITTLKDLIDE 120
Query: 113 LMDALEEAERRKPRKKKKVEIEEEIFVVDDFRVDIEKHVNRLY-EIVKEIYNETGK--PI 169
L A EE ERR+ R++++ E +EE+ + RV E+ + + + +E++ K +
Sbjct: 121 LRRA-EEVERRRRRRRRR-ERQEEVGIDAALRVPHEESLEEMIARVEREVFEALRKKDTV 178
Query: 170 RFWDLVFDVDPKIIARTFLYLLFLENMGKVEMIQEEPFGEI 210
+ LV D + ++ +L L KVE+ QEE +G++
Sbjct: 179 TLFSLVKSWDVPTLVDYYVSVLHLAFRKKVEIRQEEFYGDV 219
>pir||G70338 conserved hypothetical protein aq_423 - Aquifex aeolicus
>gi|2983097|gb|AAC06703.1| (AE000689) hypothetical
protein [Aquifex aeolicus]
Length = 205
Score = 101 bits (249), Expect = 8e-21
Identities = 66/224 (29%), Positives = 115/224 (50%), Gaps = 41/224 (18%)
Query: 7 EVTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMK 66
E P ++L L++ GK+DPW +DIV+L Y++ L++++ LDLR+ ARAILAAS L+R K
Sbjct: 8 EEHPFSLVLPLIEEGKLDPWEVDIVELANLYMEELKKLEVLDLRVPARAILAASFLLRKK 67
Query: 67 SEALLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEAER---- 122
E + + PP + +R YTL ++++ + E E
Sbjct: 68 IETIFPK---------------------PPRKYTKRKYTLQEIVDMFEEEYREVEEDIKE 106
Query: 123 -----RKPRKKKKVEIEEEIFVVDDFRVDIEKHVNRLYEIVKEIYN-----ETGKPIRFW 172
RK K+K+ + + + R ++ HV + E+++E++N E G + F+
Sbjct: 107 NVEKIRKIVKRKRASAKRK---RREKRKEVPLHVAKFEEVLEELWNSFKELEVGTRLSFF 163
Query: 173 DLVFDVDPKIIARTFLYLLFLENMGKVEMIQEEPFGEILVVPVK 216
+ + K + F+ LL+L+ KV + QE+PF +I V +K
Sbjct: 164 NF---LSKKDLVPQFMALLYLDYESKVRLFQEKPFEDITVEILK 204
>pir||E64441 hypothetical protein MJ1134 - Methanococcus jannaschii
>gi|1591768|gb|AAB99136.1| (U67556) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 226
Score = 90.5 bits (221), Expect = 1e-17
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 44/230 (19%)
Query: 12 DILL--QLVKMG----KVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRM 65
DI+L +++K G ++PW+++I ++ + YI+ ++E+++ D+R+SA IL A IL+RM
Sbjct: 7 DIVLWVRMIKEGIEKKNLNPWDVNIAEIADYYIQKIKELKKFDIRLSADVILVAGILLRM 66
Query: 66 KSEALLREDEERNEEEKEERIRVEVDPLVPPLRRVERYYTLDDLIEALMDALEEAERRKP 125
KSEAL E + EE+ + + YY DD+ E ++ + K
Sbjct: 67 KSEALYDECKVEEEEDYD---------------YCDDYYDYDDIEEKPKKGKKKEKEDKD 111
Query: 126 RKKKKVE----------IEEEIFVVDDFRVDIEKHVNRLYEIVKEIYNETGKPIRFWDLV 175
+ KK + IE+E+ V R + EK N + EI++E+ E +L+
Sbjct: 112 KNKKSKKPVTVDELIKTIEKELNKVKKSRKNREKKTNEVEEIIEELIEEDDISDIIAELL 171
Query: 176 FDVDPKII-------------ARTFLYLLFLENMGKVEMIQEEPFGEILV 212
D+ + I R F+ L+L N GK E+IQE+ FGE+++
Sbjct: 172 DDLMKEGIIVYQEKFKTREDRVRYFIPSLYLANDGKAELIQEKLFGELII 221
>gb|AAG18912.1| (AE004993) Vng0340c [Halobacterium sp. NRC-1]
Length = 286
Score = 77.6 bits (188), Expect = 1e-13
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 51/251 (20%)
Query: 8 VTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVRMKS 67
V PV +L++L + G+++PW+IDIV +T+K++ L E DLR S RA+ AS+L+RMKS
Sbjct: 25 VEPVAVLVRLAERGEIEPWDIDIVAVTDKFLAAL---DEADLRTSGRALFYASVLLRMKS 81
Query: 68 EALLREDEERNEEE-KEERIRVE------VDPLVPPL--------RRVERY------YTL 106
EA+L +D++ + ++ +ER E P P+ RR++R TL
Sbjct: 82 EAMLDDDDDEDADDGDDERAPWEPPGGDDAQPASDPVASLEAEMERRLDRKQARGSPQTL 141
Query: 107 DDLIEALMDA---------LEEAERRKPRKKKKVEIEEEIFVVDDFRV------------ 145
D+L+ L +A E P+ ++ E E D R+
Sbjct: 142 DELVRELREAERGSWWKESREYDTSDSPQGFRRGVNEMEYRSGDAGRMADEPTTAETLGN 201
Query: 146 ----DIEKHVNRLYEIVKEIYNETGKPIRFWDLVFDVDPKIIARTFLYLLFLENMGKVEM 201
DIE + + + Y E G+ + + P + TFL +LFL + G V +
Sbjct: 202 AHGEDIEATITDVRGALAAQY-EAGRDEVLYAEIAAAGPSRV-ETFLAVLFLAHRGAVTL 259
Query: 202 IQEEPFGEILV 212
Q+E FG++ V
Sbjct: 260 AQDELFGDLWV 270
>emb|CAC11917.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 233
Score = 68.7 bits (165), Expect = 5e-11
Identities = 56/217 (25%), Positives = 103/217 (46%), Gaps = 22/217 (10%)
Query: 5 EPEVTPVDILLQLVKMGKVDPWNIDIVDLTEKYIKMLREMQELDLRISARAILAASILVR 64
+P + +L++ G +DPWN+D+ ++ I+ E +D + + RA+ A ++R
Sbjct: 26 DPSKAAIIKILEMCADGLIDPWNVDLTKFSQIMIRFT-EGGSIDFQFAGRALAEAWSVLR 84
Query: 65 MKSEALLRED--------EERNEEEKEERIRVEVDPLVP-PLRRVERYYTLDDLIEALMD 115
KS+ +++ EE +E EE V+V P++ P RR LIE +
Sbjct: 85 RKSDWTAKDEAPEENEIPEEYGDEMPEEVQPVDVTPVITVPFRRPV------SLIEVIDQ 138
Query: 116 ALEEAERRKPRKKKKVEIEEEIFVVDDFRVDIEKHVNRLYEIVKEIYNETGKPIRFWDLV 175
RR+P +++ + + I R++ E +L ++ I +R D V
Sbjct: 139 VRHNIARRQPVRQRALPVSFSIE-----RLNSESPEEQLERVIGIIEGYPSDTMRMSD-V 192
Query: 176 FDVDPKIIARTFLYLLFLENMGKVEMIQEEPFGEILV 212
+ + A FLY LFL + G++EM+QE P +I++
Sbjct: 193 WGKSRRDQASFFLYSLFLYHDGRIEMMQETPDSDIII 229
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75979460
Number of Sequences: 2977
Number of extensions: 3188161
Number of successful extensions: 24186
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24170
Number of HSP's gapped (non-prelim): 8
length of query: 218
length of database: 189,106,746
effective HSP length: 56
effective length of query: 162
effective length of database: 155,591,474
effective search space: 25205818788
effective search space used: 25205818788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)