BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2111 (PAB2111) DE:Hypothetical protein
         (123 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75149 hypothetical protein PAB2111 - Pyrococcus abyssi (st...   242  2e-63
pir||C71190 hypothetical protein PH1795 - Pyrococcus horikoshii ...   148  2e-35

>pir||H75149 hypothetical protein PAB2111 - Pyrococcus abyssi (strain Orsay)
           >gi|5457789|emb|CAB49279.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 123
           
 Score =  242 bits (610), Expect = 2e-63
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MERIGKRYVFLIFAVFFVGTLLSLTEYYSPLMATALAFGSTVLAILVPWAIISIVSKKEF 60
           MERIGKRYVFLIFAVFFVGTLLSLTEYYSPLMATALAFGSTVLAILVPWAIISIVSKKEF
Sbjct: 1   MERIGKRYVFLIFAVFFVGTLLSLTEYYSPLMATALAFGSTVLAILVPWAIISIVSKKEF 60

Query: 61  KYSTMLAFLLASLWEFLCSYLAMIIGYPLWKLFLNAGIGGIIVTVGIGISTITKAKVVLS 120
           KYSTMLAFLLASLWEFLCSYLAMIIGYPLWKLFLNAGIGGIIVTVGIGISTITKAKVVLS
Sbjct: 61  KYSTMLAFLLASLWEFLCSYLAMIIGYPLWKLFLNAGIGGIIVTVGIGISTITKAKVVLS 120

Query: 121 EVK 123
           EVK
Sbjct: 121 EVK 123


>pir||C71190 hypothetical protein PH1795 - Pyrococcus horikoshii
           >gi|3258231|dbj|BAA30914.1| (AP000007) 123aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 123
           
 Score =  148 bits (370), Expect = 2e-35
 Identities = 74/123 (60%), Positives = 92/123 (74%)

Query: 1   MERIGKRYVFLIFAVFFVGTLLSLTEYYSPLMATALAFGSTVLAILVPWAIISIVSKKEF 60
           M+ IGK+Y+  I  +F +G  +SL E YS  +A ALA  STVLAILVPW II  VSK++F
Sbjct: 1   MKEIGKKYISAISFIFLIGISISLAENYSLPIAVALALVSTVLAILVPWIIIFRVSKRKF 60

Query: 61  KYSTMLAFLLASLWEFLCSYLAMIIGYPLWKLFLNAGIGGIIVTVGIGISTITKAKVVLS 120
           ++S  LAFLLASLWEF CSYL +++GYPLWK+F NAGIGGI+VT  I I  + KAK V +
Sbjct: 61  RHSIFLAFLLASLWEFFCSYLTLMLGYPLWKIFFNAGIGGIVVTAIIAIGGMIKAKGVSA 120

Query: 121 EVK 123
           EVK
Sbjct: 121 EVK 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.144    0.426 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38334183
Number of Sequences: 2977
Number of extensions: 1275156
Number of successful extensions: 5808
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5806
Number of HSP's gapped (non-prelim): 2
length of query: 123
length of database: 189,106,746
effective HSP length: 49
effective length of query: 74
effective length of database: 159,780,883
effective search space: 11823785342
effective search space used: 11823785342
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 160 (66.7 bits)