BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2112 (PAB2112) DE:SUCCINYL-COA SYNTHETASE ALPHA CHAIN
related protein
(472 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75149 succinyl-coa synthetase alpha chain related protein ... 942 0.0
pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii ... 919 0.0
pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii ... 437 e-121
pir||A75021 succinyl-coa synthetase alpha chain related protein ... 431 e-120
pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii ... 393 e-108
pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (st... 391 e-107
pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alph... 390 e-107
pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii ... 390 e-107
pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (st... 383 e-105
sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir... 382 e-105
gi|11498810 conserved hypothetical protein [Archaeoglobus fulgid... 359 5e-98
gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giard... 347 1e-94
pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii ... 328 6e-89
gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entam... 326 3e-88
pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (st... 326 4e-88
gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfat... 318 7e-86
gi|11498792 conserved hypothetical protein [Archaeoglobus fulgid... 318 7e-86
gi|11499522 conserved hypothetical protein [Archaeoglobus fulgid... 318 9e-86
gi|11499106 conserved hypothetical protein [Archaeoglobus fulgid... 315 8e-85
pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomy... 306 4e-82
emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Therm... 276 4e-73
pir||C82443 conserved hypothetical protein VCA0574 [imported] - ... 265 6e-70
gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacte... 235 9e-61
gi|11498537 conserved hypothetical protein [Archaeoglobus fulgid... 232 6e-60
emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas ... 231 1e-59
dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in U... 227 3e-58
sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA IN... 227 3e-58
pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomo... 215 1e-54
pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelic... 170 3e-41
pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas... 152 6e-36
>pir||E75149 succinyl-coa synthetase alpha chain related protein PAB2112 -
Pyrococcus abyssi (strain Orsay)
>gi|5457786|emb|CAB49276.1| (AJ248284) SUCCINYL-COA
SYNTHETASE ALPHA CHAIN related protein [Pyrococcus
abyssi]
Length = 472
Score = 942 bits (2409), Expect = 0.0
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MVNSDIREQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLD 60
MVNSDIREQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLD
Sbjct: 1 MVNSDIREQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLD 60
Query: 61 EIDGYKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGK 120
EIDGYKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGK
Sbjct: 61 EIDGYKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGK 120
Query: 121 RMEQEILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFA 180
RMEQEILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFA
Sbjct: 121 RMEQEILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFA 180
Query: 181 AAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMET 240
AAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMET
Sbjct: 181 AAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMET 240
Query: 241 AKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDL 300
AKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDL
Sbjct: 241 AKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDL 300
Query: 301 AKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVV 360
AKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVV
Sbjct: 301 AKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVV 360
Query: 361 GNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDK 420
GNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDK
Sbjct: 361 GNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDK 420
Query: 421 PIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYVRGNGE 472
PIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYVRGNGE
Sbjct: 421 PIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYVRGNGE 472
>pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii
>gi|3258225|dbj|BAA30908.1| (AP000007) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 919 bits (2350), Expect = 0.0
Identities = 456/472 (96%), Positives = 467/472 (98%)
Query: 1 MVNSDIREQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLD 60
MVNSDIREQLRPFFEP+AVAIIGATNKKGKVGNVIFENFK+NKEKGIFKGNIYPVNPKLD
Sbjct: 1 MVNSDIREQLRPFFEPKAVAIIGATNKKGKVGNVIFENFKKNKEKGIFKGNIYPVNPKLD 60
Query: 61 EIDGYKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGK 120
EI+GYKVYHDVSELPDDTDLAVIAIPAPAVPETM+KI EKGIK+VIIITGGFGELGEEGK
Sbjct: 61 EIEGYKVYHDVSELPDDTDLAVIAIPAPAVPETMRKIGEKGIKSVIIITGGFGELGEEGK 120
Query: 121 RMEQEILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFA 180
RMEQEILEIARANGIRVIGPNCVGVY PDTGVDTVFLP+EKMDRP SGPIAFISQSGAFA
Sbjct: 121 RMEQEILEIARANGIRVIGPNCVGVYVPDTGVDTVFLPDEKMDRPPSGPIAFISQSGAFA 180
Query: 181 AAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMET 240
AAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFA DDEIKVMTFYIEGVKDGRKFMET
Sbjct: 181 AAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAHDDEIKVMTFYIEGVKDGRKFMET 240
Query: 241 AKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDL 300
AKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDL
Sbjct: 241 AKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDL 300
Query: 301 AKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVV 360
AKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFL+ERFPPHAVV
Sbjct: 301 AKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLRERFPPHAVV 360
Query: 361 GNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDK 420
GNPTDVVGDTDAERYRLALEAF KDPNVDAILLIVLFQVPLLDE+EVI+IITDYAKKSDK
Sbjct: 361 GNPTDVVGDTDAERYRLALEAFTKDPNVDAILLIVLFQVPLLDEEEVINIITDYAKKSDK 420
Query: 421 PIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYVRGNGE 472
PIVVVSMGGYKTDKYA+MLEERGIPVYPTPERGVRALAGLVRYAKY+RGNGE
Sbjct: 421 PIVVVSMGGYKTDKYARMLEERGIPVYPTPERGVRALAGLVRYAKYIRGNGE 472
>pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii
>gi|3258372|dbj|BAA31055.1| (AP000007) 466aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 466
Score = 437 bits (1111), Expect = e-121
Identities = 232/463 (50%), Positives = 310/463 (66%), Gaps = 18/463 (3%)
Query: 14 FEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID----GYKVYH 69
F P +VA+IGA++ GKVGN I + N F+G IY VN K EI+ +KVY
Sbjct: 10 FYPESVAVIGASHVPGKVGNGILRSLVNN-----FRGKIYAVNVKGGEIEVNGKKFKVYK 64
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
+ ++PD D+AVIA+PA VPE + + EKG+K V++I+ GF E G +E+E+++
Sbjct: 65 SIKDVPDKVDVAVIAVPAKFVPEVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKR 122
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAM 189
A+ GIRV+GPNC+GV + G D F P E+ RPK GPIAF+SQSGAF AA+LDWAA
Sbjct: 123 AKKWGIRVVGPNCLGVTNLENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAAR 182
Query: 190 AGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKP 249
+G+ K +S GN D+D++D M Y D + KV+T YIEGVKDG+KF AK TK+KP
Sbjct: 183 HEVGMSKFISLGNMADLDESDFMLYLKNDPKTKVITAYIEGVKDGKKFFNVAKETTKVKP 242
Query: 250 IIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKL 309
+I LK+GRTE GAKAA+SHTGSLAG IY+AVF+QTGI+ A+ +F+ AKA A K
Sbjct: 243 VIVLKAGRTEAGAKAAASHTGSLAGSYRIYEAVFEQTGILAAKSMRQLFNYAKALAMQKP 302
Query: 310 PKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEET-IKFLKE----RFPPHAVVGNPT 364
GDR+ I+T+GGGAGVM SD + + GLKLAELSEET KF K + P H NP
Sbjct: 303 ANGDRVAIVTNGGGAGVMMSDGLLERGLKLAELSEETKDKFRKAIEEGKLPEHMSYANPV 362
Query: 365 DVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVV 424
DV+GD + RY LA+ ++DPNVD + +I LFQ P LDE ++D++ D KK KPIV
Sbjct: 363 DVIGDAPSSRYELAINYVLEDPNVDILAVIALFQSPALDE-GIVDVM-DRVKKYGKPIVF 420
Query: 425 VSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYV 467
++ GG +K A+ +E+ G+PV+ T E GV A+ LV+Y KY+
Sbjct: 421 IAPGGEFPEKIARRIEKVGVPVFETVEDGVDAVYALVKYGKYL 463
>pir||A75021 succinyl-coa synthetase alpha chain related protein PAB1230 -
Pyrococcus abyssi (strain Orsay)
>gi|5459121|emb|CAB50607.1| (AJ248288) SUCCINYL-COA
SYNTHETASE ALPHA SUBUNIT RELATED PROTEIN [Pyrococcus
abyssi]
Length = 466
Score = 431 bits (1097), Expect = e-120
Identities = 231/470 (49%), Positives = 309/470 (65%), Gaps = 18/470 (3%)
Query: 7 REQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID--- 63
R +L F PR+VA+IGA++ GKVGN I + F G IY VN K EI+
Sbjct: 3 RPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-----FNGKIYAVNVKGGEIEVNG 57
Query: 64 -GYKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRM 122
+KVY V E+PD+ D+AVIA+PA VP+ + + EKG+K V++I+ GF E G +
Sbjct: 58 KKFKVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--L 115
Query: 123 EQEILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAA 182
E+E+++ AR GIRV+GPNC+GV + G D F P E+ RPK GPIAF+SQSGAF AA
Sbjct: 116 EEELVKRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAA 175
Query: 183 MLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAK 242
+LDWAA +G+ K +S GN D+D++D M Y D + KV+T YIEGVKDGRKF AK
Sbjct: 176 ILDWAARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAK 235
Query: 243 RVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAK 302
TK+KP+I LK+GRTE GAKAA+SHTGSLAG IY+A FKQ+G++ A+ +F+ AK
Sbjct: 236 ETTKVKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAK 295
Query: 303 AFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEET-IKFLKE----RFPPH 357
A A KGDR+ I+T+GGGAGVM SD + + GLKLAE +EET KF K + P H
Sbjct: 296 ALAMQNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEH 355
Query: 358 AVVGNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKK 417
NP DV+GD + RY +A+ ++DPNVD +++I LFQ P LDE ++D++ K+
Sbjct: 356 MSYRNPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDE-GIVDVM-GRVKE 413
Query: 418 SDKPIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYV 467
KPIV V+ GG + A+ +E+ GIPV+ T E GV A+ LV Y KY+
Sbjct: 414 YGKPIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYL 463
>pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii
>gi|3257942|dbj|BAA30625.1| (AP000006) 460aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 460
Score = 393 bits (999), Expect = e-108
Identities = 205/463 (44%), Positives = 298/463 (64%), Gaps = 16/463 (3%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID----GY 65
L F P+++A+IGA++K GK+G I +N E G ++G IYPVN K E++ +
Sbjct: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLI---EYG-YEGKIYPVNIKGGEMEISGRKF 58
Query: 66 KVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQE 125
KVY + E+PD+ D+AVI +PA +VPE +++ +KG+K II+ GFGELGEEGK++EQ+
Sbjct: 59 KVYKSILEVPDEVDMAVIVVPAKSVPEVVEECGKKGVKVAPIISSGFGELGEEGKKVEQQ 118
Query: 126 ILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLD 185
++E AR G+R++GPN GV ++ F P + + GP+A ISQSGA A++
Sbjct: 119 LVETARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLP----GPLALISQSGALGIALMG 174
Query: 186 WAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVT 245
W + IG+ +VS GNK D+DDADL+E+F D+ K + Y+EGVKDGR+FME AK V+
Sbjct: 175 WTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTKAILIYMEGVKDGRRFMEVAKEVS 234
Query: 246 KIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFA 305
K KPII +K+GR+E GAKAA+SHTGSLAG D IY A FKQTG++RA FD A+A +
Sbjct: 235 KKKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQTGVLRALTIGEAFDWARALS 294
Query: 306 KCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTD 365
P+G+ + IIT+GGG GVMA+DA + GL L + E +K PP NP D
Sbjct: 295 NLPEPQGENVVIITNGGGIGVMATDAAEEEGLHLYD-DLEQLKIFANHMPPFGSYKNPVD 353
Query: 366 VVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKS--DKPIV 423
+ G DA+ Y A+ + P++ +I +++ Q +LD +E+ D+I +S KP+V
Sbjct: 354 LTGMADAKSYEGAIRDALAHPDMHSI-IVLYCQTAVLDPRELADVIIREYNESGRKKPLV 412
Query: 424 VVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKY 466
V +GG + + +L E GIP YP PER V+AL+ L +++K+
Sbjct: 413 VAIVGGIEAKQAIDVLNENGIPAYPEPERAVKALSALYKWSKW 455
>pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (strain Orsay)
>gi|5458076|emb|CAB49565.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 460
Score = 391 bits (993), Expect = e-107
Identities = 204/463 (44%), Positives = 297/463 (64%), Gaps = 16/463 (3%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID----GY 65
L F P+++A+IGA++K GK+G I +N E G ++G IYPVN K E++ +
Sbjct: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLI---EYG-YEGKIYPVNIKGGEMEISGRKF 58
Query: 66 KVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQE 125
KVY + E+PD+ D+A+I +PA VP+ +++ +KG+K V II+ GFGELGEEGK++EQ+
Sbjct: 59 KVYKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQ 118
Query: 126 ILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLD 185
++E AR G+R++GPN GV ++ F P + + GP+A ISQSGA A++
Sbjct: 119 LVETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLP----GPLALISQSGALGIALMG 174
Query: 186 WAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVT 245
W + IG+ +VS GNK D+DDADL+E+F D+ + + Y+EGVKDGR+FME AK V+
Sbjct: 175 WTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVS 234
Query: 246 KIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFA 305
K KPII +K+GR+E GAKAA+SHTGSLAG D IY A FKQ+G++RA FD A+A +
Sbjct: 235 KKKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALS 294
Query: 306 KCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTD 365
P+GD + IIT+GGG GVMA+DA + GLKL + E +K PP NP D
Sbjct: 295 NLPEPQGDNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVD 353
Query: 366 VVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKS--DKPIV 423
+ G DA+ Y A+ + P + +I +++ Q +LD +++ +II +S KP+V
Sbjct: 354 LTGMADAKSYEGAIRDALNHPEMHSI-IVLYCQTAVLDPRDLAEIIIREYNESGRKKPLV 412
Query: 424 VVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKY 466
V +GG + + L E GIP YP PER V+AL+ L R++K+
Sbjct: 413 VAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKW 455
>pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alpha chain
[validated] - Pyrococcus furiosus
>gi|5419966|emb|CAB46516.1| (AJ240061) acetyl-CoA
synthetase [Pyrococcus furiosus]
Length = 462
Score = 390 bits (992), Expect = e-107
Identities = 205/463 (44%), Positives = 295/463 (63%), Gaps = 16/463 (3%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID----GY 65
L F P++VA+IGA+ K GK+G I +N E G ++G IYPVN K EI+ +
Sbjct: 3 LEALFNPKSVAVIGASAKPGKIGYAIMKNLI---EYG-YEGKIYPVNIKGGEIEINGRKF 58
Query: 66 KVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQE 125
KVY V E+PD+ D+AVI +PA VP+ +++ +KG+K V II+ GFGELGEEGK++EQ+
Sbjct: 59 KVYKSVLEIPDEVDMAVIVVPAKFVPQVLEECGQKGVKVVPIISSGFGELGEEGKKVEQQ 118
Query: 126 ILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLD 185
++E AR G+R++GPN GV ++ F P + + GP+A ISQSGA A++
Sbjct: 119 LVETARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLP----GPLALISQSGALGIALMG 174
Query: 186 WAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVT 245
W + IG+ +VS GNK D+DDADL+E+F D+ + + Y+EGVKDGR+FME AK V+
Sbjct: 175 WTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVS 234
Query: 246 KIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFA 305
K KPII +K+GR+E GAKAA+SHTGSLAG D +Y A FKQ+G++RA FD A+A +
Sbjct: 235 KKKPIIVIKAGRSERGAKAAASHTGSLAGSDKVYSAAFKQSGVLRAYTIGEAFDWARALS 294
Query: 306 KCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTD 365
P+GD + IIT+GGG GVMA+DA + GL L + EE +K PP NP D
Sbjct: 295 NLPEPQGDNVVIITNGGGIGVMATDAAEEEGLHLYDNLEE-LKIFANHMPPFGSYKNPVD 353
Query: 366 VVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKS--DKPIV 423
+ G D + Y A+ + P + +I ++ Q +LD +E+ +I+ +S KP+V
Sbjct: 354 LTGMADGKSYEGAIRDALAHPEMHSI-AVLYCQTAVLDPRELAEIVIREYNESGRKKPLV 412
Query: 424 VVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKY 466
V +GG + + ML E GIP YP PER ++AL+ L +++K+
Sbjct: 413 VAIVGGIEAKEAIDMLNENGIPAYPEPERAIKALSALYKWSKW 455
>pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii
>gi|3257174|dbj|BAA29857.1| (AP000003) 457aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 457
Score = 390 bits (990), Expect = e-107
Identities = 207/458 (45%), Positives = 288/458 (62%), Gaps = 14/458 (3%)
Query: 13 FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYHDVS 72
FF P+ +A+IGA+N K+G +F+N K K KG +YPVN K +E+ G K Y V
Sbjct: 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYK-----KGKVYPVNIKEEEVQGVKAYKSVK 59
Query: 73 ELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEIARA 132
++PD+ DLA+I +P V +T+ + EKG+K V+IIT GFGE GEEGKR E+E++EIA
Sbjct: 60 DIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK 119
Query: 133 NGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMAGI 192
G+R+IGPNCVG+ ++ F+ K G +AFISQSGA A ++ I
Sbjct: 120 YGMRIIGPNCVGIMNTHVDLNATFITVAK-----KGNVAFISQSGALGAGIVYKTIKEDI 174
Query: 193 GIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPIIA 252
G K +S GN DVD A+LMEY A +E K + YIEGV++G+KFME AKRVTK KPIIA
Sbjct: 175 GFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIA 234
Query: 253 LKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPKG 312
LK+G++E GA+AASSHTGSLAG IY+A FKQ+G++ A + M +A+AF++ LP+G
Sbjct: 235 LKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFSQ-PLPRG 293
Query: 313 DRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDTDA 372
+++ I+T+ GG GV+ +D + K GLKLA L E+TI+ L+ PP A V NP D++
Sbjct: 294 NKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARG 353
Query: 373 ERYRLALEAFIKDPNVD---AILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSMGG 429
E Y + ++DPNVD AI ++ F L E I ++KP++ + M G
Sbjct: 354 EDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAG 413
Query: 430 YKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYV 467
Y ++K ++LE+ GIP Y PE A LV AK V
Sbjct: 414 YVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNV 451
>pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (strain Orsay)
>gi|5458714|emb|CAB50201.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 457
Score = 383 bits (973), Expect = e-105
Identities = 200/460 (43%), Positives = 287/460 (61%), Gaps = 18/460 (3%)
Query: 13 FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYHDVS 72
FF P+ +A+IGA+N K+G +F+N K+ K GN+YPVN + +E+ G K Y V
Sbjct: 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKQYKG-----GNVYPVNVREEEVQGVKAYKSVK 59
Query: 73 ELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEIARA 132
++P + DLA+I +P V +T+ + EKG+K V+IIT GFGE GEEGK+ E+E++EIA
Sbjct: 60 DIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIAHR 119
Query: 133 NGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMAGI 192
G+R+IGPNCVG+ ++ F+ K G +AFISQSGA A ++ I
Sbjct: 120 YGMRIIGPNCVGIMNTHADLNATFITVAK-----KGNVAFISQSGALGAGIVYKTIKEDI 174
Query: 193 GIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPIIA 252
G K +S GN D+D A+LMEY A +E K + YIEG+++GRKF+E AKRVTK KP+IA
Sbjct: 175 GFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIA 234
Query: 253 LKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPKG 312
LK+G++E GA+AASSHTGSLAG IY+A FKQ+G++ A + M +A+AF + LP+G
Sbjct: 235 LKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRG 293
Query: 313 DRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDTDA 372
R+ I+T+ GG GV+ +D + K GLKLA L E+TI+ L+ PP A V NP D++
Sbjct: 294 KRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSFLPPMAAVKNPVDMIASARG 353
Query: 373 ERYRLALEAFIKDPNVDAILLIVLF-----QVPLLDEKEVIDIITDYAKKSDKPIVVVSM 427
E Y + ++DPNVD ++ I + P + +I I + + KP++ + M
Sbjct: 354 EDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEV--NNGKPVLAMFM 411
Query: 428 GGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYV 467
GY ++K ++LE+ GIP Y PE A LV AK V
Sbjct: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNV 451
>sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir||F64373 hypothetical
protein homolog MJ0590 - Methanococcus jannaschii
>gi|1591298|gb|AAB98580.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 704
Score = 382 bits (970), Expect = e-105
Identities = 202/459 (44%), Positives = 289/459 (62%), Gaps = 16/459 (3%)
Query: 9 QLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVY 68
+L+ P++VAIIGA+ +GKVG I +N K F G IYP+NPK DEI G K Y
Sbjct: 7 ELKYISYPKSVAIIGASKTEGKVGYAIMKNLKD------FNGKIYPINPKYDEIFGIKCY 60
Query: 69 HDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILE 128
V ++ DD DLAVI +P VP+ +++ +KG+K +IIT GF E+G +E +I E
Sbjct: 61 KSVLDVEDDIDLAVIVVPNIVVPKVLEECGKKGVKGAVIITAGFSEVGNY--ELENKIKE 118
Query: 129 IARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAA 188
IA+ IR+IGPNC+G+ ++ F K+ PK G ++ ISQSGA A+LD A
Sbjct: 119 IAKRYNIRIIGPNCLGIMNTHINLNATFA---KVFPPKGG-VSIISQSGAVLNAILDIAP 174
Query: 189 MAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIK 248
+ IG K+VS GNK D+ ++DL+EYF D++ K++ YIEG+KD ++F++ AK+++K K
Sbjct: 175 LLNIGFSKVVSIGNKADIQESDLLEYFLDDEDTKIVVLYIEGLKD-KRFLKVAKKLSKKK 233
Query: 249 PIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCK 308
PIIALKSGRTE G KAA SHTGSLAG+DVIY+A FK+ GIIRA FE + DL F+
Sbjct: 234 PIIALKSGRTEVGKKAAKSHTGSLAGEDVIYEAAFKEAGIIRAYTFEELVDLIHLFSTQP 293
Query: 309 LPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVG 368
+ IGIIT+ GG GV+A+D+ + +KL+ + TI+ LK PP A + NP D++G
Sbjct: 294 TISSNEIGIITNAGGFGVLAADSCVDYNMKLSNFEKSTIEKLKNILPPTANISNPLDIIG 353
Query: 369 DTDAERYRLALEAFIKDPNVDAILLIVLFQ---VPLLDEKEVIDIITDYAKKSDKPIVVV 425
D ERY+ +E +D NV +L+I+ Q PL K +I++ + + +KP++
Sbjct: 354 DATPERYKKVIEVLAEDSNVKGLLVILTPQEMTKPLEVAKSIIEVKNSHKEFKNKPLITS 413
Query: 426 SMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYA 464
+GG L + GIP Y TPE GV+AL+ L +Y+
Sbjct: 414 FVGGVSVKGAKSYLRKNGIPAYITPENGVKALSHLYKYS 452
>gi|11498810 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448044|pir||B69401 conserved hypothetical protein
AF1211 - Archaeoglobus fulgidus
>gi|2649370|gb|AAB90033.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 685
Score = 359 bits (911), Expect = 5e-98
Identities = 185/452 (40%), Positives = 277/452 (60%), Gaps = 19/452 (4%)
Query: 14 FEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYHDVSE 73
F P+ VA+IGA+ ++GKVGN I +N + F G +Y VNPK EI G+ Y V +
Sbjct: 5 FYPKVVAVIGASPQEGKVGNTIMKNLRN------FSGTVYAVNPKYREILGFPCYPSVLK 58
Query: 74 LPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEIARAN 133
+P++ DLA+I +PA VP+ +++ K ++ ++I+ GF E G EG ++E+E++E+A
Sbjct: 59 IPENVDLAIIVVPAKLVPKAVEECGRKDVEGAVVISAGFKEAGIEGAKLERELVEVAERY 118
Query: 134 GIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMAGIG 193
G++++GPNC+G+ + ++ F P+ G IAF+SQSGAF A+L+W+ G+G
Sbjct: 119 GVKLVGPNCLGMINTEIAMNATF----SRVAPEKGRIAFLSQSGAFILAVLEWSKRNGVG 174
Query: 194 IGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPIIAL 253
K+VS GNK +D++D +EY A+DD V+ Y+EGV+DGRKFM AK V + KP++ +
Sbjct: 175 FSKVVSLGNKAMLDESDFLEYLAKDDSTDVILIYMEGVEDGRKFMRVAKSVARRKPVVVM 234
Query: 254 KSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPKGD 313
K+G+++ GAKAASSHTGSLAG Y A F+Q+G+I A E +FD A K + K
Sbjct: 235 KAGKSQSGAKAASSHTGSLAGSYEAYRAAFRQSGVIEASSVEELFDFALLLLKYR--KAG 292
Query: 314 RIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDTDAE 373
+ I+T+ GG GVMA+DA +FG+ LA + ETI+ LKE P + NP D++GD AE
Sbjct: 293 NLAILTNSGGPGVMAADACDQFGVPLANFNFETIRKLKEFLPAESNFYNPVDILGDASAE 352
Query: 374 RYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSMGGYKTD 433
R+ +L+ +D NVD +L I L +D + K V MGG D
Sbjct: 353 RFSRSLQILSEDENVDIVLTI-------LTPTAQMDFLKAAESVVGKNAVCCFMGGESVD 405
Query: 434 KYAKMLEERGIPVYPTPERGVRALAGLVRYAK 465
+ ++L GIP + P R VRA++ L RY+K
Sbjct: 406 ESERILRSSGIPNFFDPVRAVRAISVLGRYSK 437
>gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giardia intestinalis]
Length = 726
Score = 347 bits (882), Expect = 1e-94
Identities = 182/453 (40%), Positives = 271/453 (59%), Gaps = 14/453 (3%)
Query: 16 PRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYHDVSELP 75
P +VA+IGA+ GKVGN + N K E G + G +YP+NP EI GYK Y V ++P
Sbjct: 21 PASVAVIGASPNAGKVGNTVVTNIK---ESG-YTGKVYPINPTATEILGYKTYKSVLDVP 76
Query: 76 DDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEIARANGI 135
D D+ ++ IP+ AV K+ A+K +K++++IT GF E+G EG +MEQ++ +I + GI
Sbjct: 77 DSIDVVIVVIPSKAVLAAAKECAQKKVKSLVVITAGFKEIGGEGVQMEQDLTKICKDAGI 136
Query: 136 RVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMAGIGIG 195
R++GPNC+G+ P+ ++ F +P G IAF+SQSGA ++LDWA GIG
Sbjct: 137 RLVGPNCLGIVTPN--LNCTFASA----KPSKGSIAFLSQSGAMLTSILDWALTNGIGFS 190
Query: 196 KMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPIIALKS 255
+S GNK DVD+ DL+ A+D ++ Y+E + DGRKF+E KP+I LKS
Sbjct: 191 NFISLGNKADVDEVDLIMEVAEDPNTDIILLYLESIVDGRKFLEQIPTCVHKKPVIILKS 250
Query: 256 GRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPKGDRI 315
G + GA AASSHTG+LAG D+ +D F++ G++RA +FDL + F +LPKGD
Sbjct: 251 GTSAAGAAAASSHTGALAGNDIAFDLAFEKAGVLRAATMSDLFDLGRLFVSHRLPKGDNF 310
Query: 316 GIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDTDAERY 375
I+T+ GG G++ +DA + + +A LS++T + L + P A V NP D+VGD +RY
Sbjct: 311 VIVTNAGGPGIVTTDAFETYHVGMAALSDKTKEALAKVLPGEASVKNPVDIVGDAPPKRY 370
Query: 376 RLALEAFIKDPNVDAILLIVLFQVPLLDEK--EVIDIITD-YAKKSDKPIVVVSMGGYKT 432
ALE K+P + + V+ P K EV ++ T YAK D+ +V MGG
Sbjct: 371 EDALEICFKEP-PETVAGAVILVTPQGQTKPCEVAELCTRMYAKYPDRLVVSAFMGGLTM 429
Query: 433 DKYAKMLEERGIPVYPTPERGVRALAGLVRYAK 465
+ +K+L +PV+P PE + A +++Y K
Sbjct: 430 QEPSKILNNAKMPVFPFPEPAIHATGAVLKYRK 462
>pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii
>gi|3257031|dbj|BAA29714.1| (AP000003) 440aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 440
Score = 328 bits (833), Expect = 6e-89
Identities = 188/447 (42%), Positives = 268/447 (59%), Gaps = 20/447 (4%)
Query: 13 FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID-GYKVYHDV 71
FF P++VAI G+ +KG + I RN +G F+G I PVNPK E++ + +
Sbjct: 4 FFYPKSVAIFGSF-RKGSIAREIL----RNIVEGGFEGKIIPVNPKGGEVEVSGRRFIIK 58
Query: 72 SELPDDTDLAVIAIPAPAVPETMKKIAEKGI-KAVIIITGGFGELGEEGKRMEQEILEIA 130
+L + D+++I IPA VP ++++ KG+ K ++I+ GF E+G +E+E++ A
Sbjct: 59 RKLDEFVDVSIIVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNV--ELEEELIRAA 114
Query: 131 RANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMA 190
+ +GIR+IGPNC G++ GV F ++ R G +A ISQSGAF A L
Sbjct: 115 KESGIRIIGPNCAGIF----GVHGKFFGSFEV-RVNPGGLALISQSGAFGGAALAMGNEE 169
Query: 191 GIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPI 250
+G VSYGN D+D++D + YFA D+ KV+ YIEGVKDGRKF E K T KP+
Sbjct: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
Query: 251 IALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLP 310
I LK+G+++ GAKAA SHTGSLAG IY A FKQ I E+ E +FD AKAF K
Sbjct: 230 IILKAGKSKSGAKAAQSHTGSLAGSYEIYQAAFKQANAIEVEEMEELFDAAKAFEMYK-E 288
Query: 311 KGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDT 370
G R+ +IT+ GG GV+A+D + K GL++A+LSE+T+K L+E PP NP D++ D
Sbjct: 289 AGSRVAVITNSGGPGVLATDKLEKLGLEIAQLSEDTVKKLREFLPPQCSTKNPIDLIADA 348
Query: 371 DAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSMGGY 430
D ERY+ +E +D NVD++L+I + + + E+ II K DKPI+V M G
Sbjct: 349 DYERYKRTIEIVCQDENVDSLLVICVPPIFIPSEEIARAII---EAKCDKPIIVNFMSGE 405
Query: 431 KTDKYAKMLEERGIPVYPTPERGVRAL 457
K+L + I +PTPER +AL
Sbjct: 406 LVANGVKLLNDHDIKNFPTPERAAKAL 432
>gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entamoeba histolytica]
Length = 713
Score = 326 bits (827), Expect = 3e-88
Identities = 184/455 (40%), Positives = 263/455 (57%), Gaps = 11/455 (2%)
Query: 9 QLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVY 68
Q P F P++V +IGA+++K VG + N KG +KGN+YPV K E+ G K Y
Sbjct: 2 QFEPLFNPKSVPVIGASDRKESVGYAVMNNMI----KGGYKGNLYPVGRK-PELFGKKCY 56
Query: 69 HDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILE 128
+ ++ + DLAVIAIPA VP + E G+K +IIIT GF E GEEGK+M EI
Sbjct: 57 AKIGKIEEKVDLAVIAIPAKFVPGVCIECGEAGVKGLIIITAGFAEAGEEGKKMCIEIQA 116
Query: 129 IARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAA 188
+ +R+IGPNC+G+ P GV+ F P++G +AFISQSGA A+LDWAA
Sbjct: 117 TCQKYNMRMIGPNCLGIINPRDGVNASFASV----MPEAGGVAFISQSGALCTAILDWAA 172
Query: 189 MAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIK 248
+G VS G+ ID D ADL E+FA+D ++ + YIE +KD +KF+ A+ K
Sbjct: 173 NQHVGFSYFVSIGSSIDTDYADLFEFFAKDPKVTSILMYIESIKDAKKFVLRAREFAADK 232
Query: 249 PIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCK 308
PII LK+G++ GA AA SHTGSLAG D +YDAVF + G IR + ++D A A
Sbjct: 233 PIILLKAGKSSEGAAAAMSHTGSLAGNDAVYDAVFDRCGCIRVDSICDLWDCAHVLATQN 292
Query: 309 LPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVG 368
+P+ +R+ IIT+ GG GV+++D + LA+LSE T+ L P NP DV+G
Sbjct: 293 IPQNNRLCIITNAGGPGVISTDRLVSVHGHLAKLSESTMNELNAFLSPFWSHSNPVDVLG 352
Query: 369 DTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSMG 428
D A Y+ L+ IKDP +D + ++VL + D V + ++ ++ +
Sbjct: 353 DATAGVYQKTLDIVIKDPQIDGV-VVVLTPQAMTDPVAVAKSLVEHGPYQNQSL-PHGWV 410
Query: 429 GYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRY 463
K++ K+LEE IP + TPER V A ++R+
Sbjct: 411 NQKSEAGVKILEEGKIPNFETPERAVTAFGYIMRH 445
>pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (strain Orsay)
>gi|5458844|emb|CAB50331.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 442
Score = 326 bits (826), Expect = 4e-88
Identities = 187/447 (41%), Positives = 267/447 (58%), Gaps = 20/447 (4%)
Query: 13 FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID-GYKVYHDV 71
FF P++VAI G+ ++G + I RN +G F+G I PVNPK ++ + +
Sbjct: 4 FFYPKSVAIFGSF-REGAIAREIL----RNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIR 58
Query: 72 SELPDDTDLAVIAIPAPAVPETMKKIAEKGI-KAVIIITGGFGELGEEGKRMEQEILEIA 130
L ++ D++++ IPA VP ++++ KG+ K ++I+ GF E+G +E+E+++ A
Sbjct: 59 KRLEEEVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIKAA 114
Query: 131 RANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMA 190
+ GIR+IGPNC G++ GV F ++ R G +A ISQSGAF A L
Sbjct: 115 KEAGIRIIGPNCAGIF----GVHGKFFGSFEV-RVNPGGLALISQSGAFGGAALAMGNEE 169
Query: 191 GIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPI 250
+G VSYGN D+D++D + YFA D+ KV+ YIEGVKDGRKF E K T KP+
Sbjct: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
Query: 251 IALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLP 310
I LK+G++E GAKAA SHTGSLAG IY AVFKQ I E+ E +FD AKAF +
Sbjct: 230 IILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQ-S 288
Query: 311 KGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGDT 370
G R+ +IT+ GG GV+A+D + K GL++A LSEET+ L+E PP NP D++ D
Sbjct: 289 AGSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADA 348
Query: 371 DAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSMGGY 430
D ERYR +E +D NVD++L+I + + + E+ II K +KPI+V M G
Sbjct: 349 DYERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAII---EAKCNKPIIVNFMAGE 405
Query: 431 KTDKYAKMLEERGIPVYPTPERGVRAL 457
K ++L GI +PTPER +AL
Sbjct: 406 LVKKGVELLNAHGIKNFPTPERAAKAL 432
>gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 660
Score = 318 bits (807), Expect = 7e-86
Identities = 173/450 (38%), Positives = 261/450 (57%), Gaps = 21/450 (4%)
Query: 8 EQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKV 67
++L F+PR++A++GA+ K KVGNVIF N F+G +YP+N K ++++G K
Sbjct: 2 DELNYLFKPRSIAVVGASRHKEKVGNVIFRNLLST-----FQGKLYPINTKAEDVEGVKA 56
Query: 68 YHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEIL 127
Y V E+PDD DL VIA+P VP+TM++ EKG+KA I+IT GF E+GEE ++E E++
Sbjct: 57 YKSVKEIPDDIDLGVIAVPREVVPQTMEEFVEKGVKASIVITAGFREVGEE--KLENEVI 114
Query: 128 EIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWA 187
IAR GIRV+GPN G+ P+ + K G + + QSG ML+WA
Sbjct: 115 SIARKGGIRVLGPNTFGIITPEFNATFTYTDV------KRGNVGLVVQSGGLGVYMLNWA 168
Query: 188 AMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI 247
IGI MVS GN+ DV + +++ Y ++D E + + Y+EGV DG F+E T+
Sbjct: 169 QKYRIGISYMVSLGNQADVKEYEVINYLSKDAETRAIFVYLEGVSDGNAFLEELPEATRR 228
Query: 248 KPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKC 307
KP++ LK G + GA AA +HTGSLAG ++ A G I ++ M +LAK
Sbjct: 229 KPVVFLKGGVSSSGASAAKTHTGSLAGSFEVFKAAVNTIGGILVDNLHDMLNLAKILMYS 288
Query: 308 KLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVV 367
+ P + + +IT+ GG GV+ SD + K GL+L E+ E K L + PP ++ NP D+
Sbjct: 289 E-PISEELLVITNSGGHGVLVSDEIDKNGLRLVEIPEWMKKELTKILPPTSLPKNPLDLT 347
Query: 368 GDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVSM 427
GD D ERY AL+ ++D L+++ +P++ +V +I+++ K ++ V+M
Sbjct: 348 GDADRERYHNALKIV---SSLDCTKLVIVQSLPMVSCSDVARVISNF---KGKGVIGVTM 401
Query: 428 GGYKTDKYAKMLEERGIPVYPTPERGVRAL 457
G D K+LE GIP Y PE V+A+
Sbjct: 402 -GLDEDMALKILETTGIPGYTFPEDAVKAI 430
>gi|11498792 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483097|pir||G69398 conserved hypothetical protein
AF1192 - Archaeoglobus fulgidus
>gi|2649402|gb|AAB90053.1| (AE001022) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 664
Score = 318 bits (807), Expect = 7e-86
Identities = 178/462 (38%), Positives = 279/462 (59%), Gaps = 20/462 (4%)
Query: 8 EQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKV 67
E + FF+ ++VA+IGA+ K G + N K F+G +YPVNP EI GYK
Sbjct: 216 EDISFFFKAKSVAVIGASRNLLKPGGRVLSNLKHLG----FRGKVYPVNPNAGEILGYKC 271
Query: 68 YHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEIL 127
Y V +PD DLAVIA+P+ E +K+ AEKG+K +I+++ GF E E+GK +E++I+
Sbjct: 272 YPSVRAIPDKVDLAVIAVPSKNAIEVVKECAEKGVKGIIVLSAGFAEGWEQGKELERQIV 331
Query: 128 EIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWA 187
EIAR +G+R++GPN +G+ P++G+ + F K+ + G I ++QSGA A +L
Sbjct: 332 EIARKSGMRIVGPNTMGILDPESGLTSFFSVLRKIGQ---GNIGVLAQSGAVANFIL--L 386
Query: 188 AMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI 247
+ +G K+V+ GNK DV + +++ + +D++ +V+ Y+EG +GRKF E K T
Sbjct: 387 PLWHVGFSKIVAIGNKADVGEVEVLNFLLKDEKTRVVAAYLEGFTNGRKFYELMKAST-- 444
Query: 248 KPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKC 307
KPI+ LKSGRTE G ++A SHT S++ + I++A KQ G+ + DFE + D AKA A
Sbjct: 445 KPIVVLKSGRTEAGKRSALSHTASISTSEEIFEAACKQAGVAKVYDFEELVDAAKALALQ 504
Query: 308 KLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTD-- 365
LP+G R+G+I G VM++DAV + GL+LA+ SE+T++ L E P + NP D
Sbjct: 505 PLPRGTRVGVIQPSGAECVMSADAVVENGLELAKYSEKTLERLYELAPEWHSINNPLDLY 564
Query: 366 -VVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVV 424
+ + E + L+ F +D N+DAI+ V +P + + + + + +K KP++
Sbjct: 565 PIAEKSGDEVFNEVLKVFNEDENIDAIVAGVF--IPSIMK---LGVDFSWTRKFSKPVLF 619
Query: 425 VSMGGYKTDKYAKM-LEERGIPVYPTPERGVRALAGLVRYAK 465
+ + A++ +E G+PVYPTPER VRAL +V AK
Sbjct: 620 TMKDDIEELRQARIEIERSGVPVYPTPERAVRALRHMVTVAK 661
>gi|11499522 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483184|pir||A69492 conserved hypothetical protein
AF1938 - Archaeoglobus fulgidus
>gi|2648606|gb|AAB89317.1| (AE000970) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 673
Score = 318 bits (806), Expect = 9e-86
Identities = 187/465 (40%), Positives = 264/465 (56%), Gaps = 23/465 (4%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
LR F P++VA+IGA+ GK G I N K+N F G IYPVNP D+I K Y
Sbjct: 218 LRDLFYPKSVAVIGASRTVGKPGFNIVWNLKQNG----FMGKIYPVNPNADKILELKCYP 273
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
+ ++PD+ D+A+IA+PA VPE M + A+KGIK +I++ GF E GE+G E+ +LEI
Sbjct: 274 SILDIPDEVDMAIIAVPAKIVPEVMAECAQKGIKGAVIVSSGFSEEGEKGAEYERRVLEI 333
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAM 189
A+ +GIR+ GPN GV + G T F + + K G I I+Q+G F M+D
Sbjct: 334 AKKHGIRIFGPNTTGVLNTENGFITSFAIQPVI---KKGNIGIIAQTGLFLGIMMDIVTS 390
Query: 190 --AGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI 247
IG K+V GNKIDV+D +++++ +D++ KV+ Y+EG+K+GR F + A
Sbjct: 391 NHPSIGFSKIVGMGNKIDVEDYEVLDFLLKDEQTKVIGIYMEGIKNGRAFYDVASSAE-- 448
Query: 248 KPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKC 307
KPI+ KSGRTEYG KAA SHT S+ G D ++DAV +Q ++R F+ +FD+ KAF+
Sbjct: 449 KPIVVFKSGRTEYGQKAAMSHTASICGDDDVFDAVCRQANLVRVYSFDELFDVTKAFSLQ 508
Query: 308 KLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVV 367
LPKGDR+ II G V SDA GLKLAE S++T+ + E P V NP D+
Sbjct: 509 PLPKGDRVAIIHYTGSGCVQGSDAAYFAGLKLAEFSKDTVDKISEVTPEWHNVNNPIDIW 568
Query: 368 GDTD----AERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDY--AKKSDKP 421
+ + Y+ A+EA ++D VD+++ V + L++ D DY KK KP
Sbjct: 569 PMVEYYGAFKAYQTAIEAVMEDEGVDSVIACV-WANRLIN----ADFEPDYKSLKKYGKP 623
Query: 422 IVVVSMGGYK-TDKYAKMLEERGIPVYPTPERGVRALAGLVRYAK 465
I G + LE GIPVY V L + +YAK
Sbjct: 624 IYFCVEGARDVVFDHKNALELNGIPVYTNVINAVNVLGKVTKYAK 668
>gi|11499106 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483131|pir||F69438 conserved hypothetical protein
AF1511 - Archaeoglobus fulgidus
>gi|2649053|gb|AAB89736.1| (AE000998) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 881
Score = 315 bits (798), Expect = 8e-85
Identities = 176/463 (38%), Positives = 262/463 (56%), Gaps = 16/463 (3%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
L+ FF P +VA+IGA+ KVG F N + F G YPVN I G + Y
Sbjct: 191 LKHFFNPESVAVIGASRDVEKVGGRTFYNLLTYR----FNGVAYPVNRAAKAIMGVRAYP 246
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
+SE+PD+ +LAV+++P E ++ +KG+KA++++T GF E+G EG +++++EI
Sbjct: 247 TISEVPDEVELAVLSVPVKYALEVAEECGKKGVKALLVLTAGFAEVGGEGVERQKKLVEI 306
Query: 130 ARANGIRVIGPNCVGVY--APDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWA 187
R G+R+IGPNC+G+ AP+T + F P P G IAF SQSGA A++D
Sbjct: 307 CRKYGMRLIGPNCMGIINTAPETRLLATFAPTP----PNEGSIAFASQSGAVGLALMDRV 362
Query: 188 AMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI 247
G+G+ VS GN D+ DL+E++ +D K++ Y E + + RKF AKR++K
Sbjct: 363 NNYGLGLSYFVSLGNSADITSNDLIEFWEEDGRTKLIMLYQESIPNPRKFARLAKRISKK 422
Query: 248 KPIIALKSGRTEYGAKAASSHTGSLAGQD-VIYDAVFKQTGIIRAEDFEHMFDLAKAFAK 306
KPI+A+ SG T GAKA +SHTG++ + DA+FKQTGIIRA + +F +++
Sbjct: 423 KPILAIASGVTPAGAKAVASHTGAIVSSSGIAIDALFKQTGIIRASSIDELFSISEFLLH 482
Query: 307 CKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDV 366
LPKG+R+ I+T+GGG G + SD + GL++AELSE T + L+ P A V NP D+
Sbjct: 483 QPLPKGNRVCIVTNGGGLGAITSDWCHQVGLEIAELSERTQESLRNLLPEIASVKNPVDM 542
Query: 367 VGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDII---TDYAKKSDKPIV 423
D Y L+ +D NVDAI+ I + V +EV + YA KP+V
Sbjct: 543 TASADVRMYGQTLKTVAEDENVDAIICIFVAAVSEEKSEEVEKAVISAAKYANSVGKPVV 602
Query: 424 VVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKY 466
+ + D + +E +PVY P + L +V YAK+
Sbjct: 603 YIYISSDSKD--GVIGDEVKVPVYVFPNTAAKVLGKVVEYAKW 643
>pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomyces coelicolor
>gi|3288603|emb|CAA19775.1| (AL031013) hypothetical
protein SC8A6.03c [Streptomyces coelicolor A3(2)]
Length = 714
Score = 306 bits (775), Expect = 4e-82
Identities = 162/466 (34%), Positives = 258/466 (54%), Gaps = 15/466 (3%)
Query: 5 DIREQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDG 64
+I +R +P +VA+IGA+ + GK+GN + RN G F G I+PVNPK D+I G
Sbjct: 250 EILTSMRRLMQPASVAVIGASGEPGKIGNSVM----RNLVDGGFAGEIHPVNPKADDILG 305
Query: 65 YKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQ 124
K Y V+++P + D+AV AIPA V ++++ K I ++I GF E GE+ ++
Sbjct: 306 RKAYKSVTDVPGEVDVAVFAIPARFVAAALEEVGRKRIPNAVLIPSGFAETGEQA--LQD 363
Query: 125 EILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAML 184
EI+ +A +G+R++GPN G Y+ + F + G +A SQSG A+L
Sbjct: 364 EIVAVAERHGVRLLGPNIYGYYSTWQDLCATFCTPYDV----KGGVALTSQSGGIGMAIL 419
Query: 185 DWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRV 244
+A G+ +V GNK D+D+ DL+ +F +D + + ++E +KDGR F+E A+
Sbjct: 420 GFARTTKTGVSAIVGLGNKSDLDEDDLLTWFGEDPHTECIAMHLEDLKDGRAFVEAARAT 479
Query: 245 TKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAF 304
KP++ LK+GRT GAKAA SHTG+LAG D +YD + +Q G+IRA M + A+A
Sbjct: 480 VPRKPVVVLKAGRTAAGAKAAGSHTGALAGDDAVYDDILRQAGVIRAPGLNEMLEYARAL 539
Query: 305 AKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPT 364
P+GD + IIT GG+GV+ SDAV GL L E+ + + + PP GNP
Sbjct: 540 PVLPAPEGDNVVIITGAGGSGVLLSDAVTDNGLSLMEIPPDLDRAFRAFIPPFGAAGNPV 599
Query: 365 DVVGDTDAERYRLALEAFIKDPNVDAILL---IVLFQVPLLDEKEVIDIITDYAKKS-DK 420
D+ G Y + ++DP + A++L + P++ + ++ ++ ++ +K
Sbjct: 600 DITGGEPPSTYEATIRLGLEDPRIHALVLGYWHTIVTPPMVFAELTARVVAEFRERGVEK 659
Query: 421 PIVVVSMGGYKTDKYAKMLEERGIPVYP-TPERGVRALAGLVRYAK 465
P+V G + ++ + L ERG+ YP T E+ V L R+A+
Sbjct: 660 PVVASLAGDVEVEEACQYLFERGVVAYPYTTEKPVAVLGAKYRWAR 705
>emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Thermoplasma
acidophilum]
Length = 698
Score = 276 bits (698), Expect = 4e-73
Identities = 154/455 (33%), Positives = 258/455 (55%), Gaps = 19/455 (4%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
L+ F P +VA+IGA+ K K+G I N K +G ++G +YPVN K I GY VY
Sbjct: 8 LKSLFYPESVAVIGASADKTKIGYQIVRNLK----EGGYQGKVYPVNRKGGNILGYTVYP 63
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
+ ++PD DLA+I++PA PE ++ +KG+ +I++ GF E+G K +E +++E+
Sbjct: 64 SIGDVPDKVDLAIISVPAEHTPEAAEECGKKGVFGIIVVASGFSEVGR--KDLEDQLVEV 121
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAM--LDWA 187
R +R++GPN VG+ ++ F P P G I +SQSGA + + W+
Sbjct: 122 CRKYNMRLLGPNVVGLMNNVLKLNASFAPY----LPYPGTIGMVSQSGALIVGLDAMTWS 177
Query: 188 AMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI 247
G ++S GN D+D +DL+ + A+D+ + ++ Y EG+K GR+F++TA+ + K
Sbjct: 178 NKTGTSF--LISIGNMADLDFSDLVSFLAEDNNVSCISLYTEGLKAGRRFIDTARSIKK- 234
Query: 248 KPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKC 307
PI+ LKSG +++G+ AA+SHTGSLAG +YD KQ G++RA E +FDL+ +
Sbjct: 235 -PIVMLKSGISKHGSVAAASHTGSLAGSHRVYDGALKQAGVVRANSIEELFDLSLTLSLQ 293
Query: 308 KLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVV 367
GD + ++T+GGG GV+A+D G+ L S++ +++ P NP D+
Sbjct: 294 PPMGGDNLMVVTNGGGIGVLATDQAELSGIPLQTPSDDLQAKIRQVIPSFGSTKNPIDMS 353
Query: 368 GDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKSDKPIVVVS- 426
E Y ++ ++D +VD L+++ +V LD + I + S++ I VV+
Sbjct: 354 AMATPEIYADTIKTVMEDDSVDG-LVVLYCEVANLDPSDAAKGIINGVLSSNRKIPVVAG 412
Query: 427 -MGGYKTDKYAKMLEERGIPVYPTPERGVRALAGL 460
+GG + + L + GIP + +P++ V+A+A L
Sbjct: 413 FVGGEHSKNASLYLIKNGIPTFDSPDKAVKAMAAL 447
>pir||C82443 conserved hypothetical protein VCA0574 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657984|gb|AAF96476.1|
(AE004388) conserved hypothetical protein [Vibrio
cholerae]
Length = 893
Score = 265 bits (671), Expect = 6e-70
Identities = 149/461 (32%), Positives = 245/461 (52%), Gaps = 11/461 (2%)
Query: 8 EQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKV 67
+ L P++VA+IGA+ + + GN++ +N + G F G I PV P + G
Sbjct: 2 DHLNQLLRPKSVAVIGASVRSFRAGNIVMKNLLQ----GGFDGAIMPVTPYYPAVCGVLA 57
Query: 68 YHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEIL 127
Y +S+LP D+A++ A K++AEKG+K VI+++ L +G+ ++ + +
Sbjct: 58 YKTISDLPIVPDIAILCTHASRNVSLFKQLAEKGVKQVIVLSSDMYSLDAQGEEIQAQCM 117
Query: 128 EIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWA 187
IA++ +R++GPN +G+ P + F P + G IAF+SQS A +LDWA
Sbjct: 118 TIAKSVNMRILGPNSLGLILPWMQFNGSFSPVSAL----KGNIAFVSQSAAVCTTILDWA 173
Query: 188 AMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI 247
GIG +S GN D+D ADL++ + D + Y++ ++D R+FM A+ ++
Sbjct: 174 NDKGIGFSAFISLGNASDIDFADLLDTLSTDKHTDAILLYVDTIRDARRFMSAARAASRN 233
Query: 248 KPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKC 307
+ I+ LK GRT+ G KAA HTG D+IYD+ ++TG++R + +F +
Sbjct: 234 RRILVLKGGRTKAGRKAAQMHTGGDDTLDIIYDSAIRRTGMLRVNNTHELFAAVETLTHS 293
Query: 308 KLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVV 367
+G+R+ IIT+GGG +MA DA+ + G KLA+L +E + L + P NP D+V
Sbjct: 294 VPLRGERLAIITNGGGPAIMAVDALLERGGKLAQLEDEIYEKLNQSLPQSWSHSNPVDIV 353
Query: 368 GDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAK--KSDKPIVVV 425
GD D RY L ++ N+DAIL++ E+ ++ K ++ + ++
Sbjct: 354 GDADHLRYVSTLNILLESENIDAILIMHSPSAIAHSEQTAQALVEAVQKHPRAKRFNILT 413
Query: 426 SMGGYKTDKYAKML-EERGIPVYPTPERGVRALAGLVRYAK 465
+ G + K A+ L + GIP Y TPE V A LV Y +
Sbjct: 414 NWSGELSAKPARTLFNQAGIPTYRTPESAVTAFMHLVEYRR 454
>gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacterium sp. NRC-1]
Length = 542
Score = 235 bits (593), Expect = 9e-61
Identities = 118/288 (40%), Positives = 180/288 (61%), Gaps = 1/288 (0%)
Query: 173 ISQSGAFAAAMLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVK 232
+SQSGAF A+LDWA GIG + S GNK + + D M+ +A D + V+ Y+EGV
Sbjct: 1 MSQSGAFITAVLDWANDQGIGFKDIASLGNKAVLSETDFMQAWADDPDTNVILGYLEGVD 60
Query: 233 DGRKFMETAKRVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAE 292
DGR+F++ A+ VT+ P + +KSGRTE GA+AASSHTG++AG + Y+A FKQ G++RAE
Sbjct: 61 DGREFIDDAREVTQDTPAVVVKSGRTEAGAQAASSHTGTIAGSEAAYEAGFKQAGVVRAE 120
Query: 293 DFEHMFDLAKAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKE 352
+ + +FD A+A +P + + +IT+ GG GVMA+DAV L +A ++TI L+
Sbjct: 121 NVQELFDFARALDGLPMPDSEDVAVITNAGGPGVMATDAVGDSRLSMASFEDDTIDALQG 180
Query: 353 RFPPHAVVGNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIIT 412
P A V NP DV+GD + +R+R A++ + D +V L++ ++D E+ +IT
Sbjct: 181 SMPDEANVYNPVDVIGDAEIDRFRTAIDTVLADEHV-GCALVLSAPTAVIDYTELSGVIT 239
Query: 413 DYAKKSDKPIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGL 460
+K +KP+V MGG +T++ +L + GIP Y P R + +L L
Sbjct: 240 ALQEKHNKPVVTCLMGGERTEQATDVLGDAGIPNYFDPARAIGSLDAL 287
>gi|11498537 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483066|pir||D69366 conserved hypothetical protein
AF0932 - Archaeoglobus fulgidus
>gi|2649664|gb|AAB90306.1| (AE001039) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 666
Score = 232 bits (586), Expect = 6e-60
Identities = 131/390 (33%), Positives = 208/390 (52%), Gaps = 13/390 (3%)
Query: 13 FFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYHDVS 72
FF+ R+VA+IGA+ KVGN + + NK IYP+NP EI G K Y V
Sbjct: 222 FFKARSVAVIGASTNPIKVGNSVVRSLMSNKNL-----RIYPINPNASEILGLKAYPSVK 276
Query: 73 ELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELG-EEGKRMEQEILEIAR 131
LP+ D+A++ +PA V + +++ AE G+K V+II+ GF E EEGK E+ + EIAR
Sbjct: 277 SLPEVPDIAIVTVPAEFVLDAVREAAEAGVKGVVIISSGFKEAEVEEGKVREERLREIAR 336
Query: 132 ANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAMAG 191
GIR++GPN G+ + G++ F P K G IA +SQSG ++
Sbjct: 337 KYGIRIVGPNTFGIVSVVGGINASFTP--MFSEVKKGRIALVSQSGGICHYIIH--KFRD 392
Query: 192 IGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKPII 251
G ++ GN+ DVD D+M + +D+ V+ Y+EG+ +GR E KR+ K ++
Sbjct: 393 SGFSHILHLGNRCDVDFPDVMRFLREDENTDVVAVYVEGIDNGRGLFEELKRLCSEKKVV 452
Query: 252 ALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKLPK 311
+KSGR+ KA+ SHTGS+AG ++ + KQ G + E + D A A K ++
Sbjct: 453 VMKSGRSSVADKASVSHTGSMAGDYRVFASAMKQAGAVVVETPTELIDTAIAMEKFEVSG 512
Query: 312 GDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDV-VGDT 370
G + ++T G G++A+D + G +LA EET++ LK PP + NP D+
Sbjct: 513 G--VAVLTIQAGLGIVAADIIESSGGRLARFGEETVRKLKSLLPPITLRENPVDLSFSGL 570
Query: 371 DAERYRLALEAFIKDPNVDAILLIVLFQVP 400
+ + + ++ +D +V ++ + P
Sbjct: 571 NLKVFAEVIDTVCRDDDVGLVMFLYAVAPP 600
>emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas mendocina]
Length = 711
Score = 231 bits (583), Expect = 1e-59
Identities = 148/457 (32%), Positives = 232/457 (50%), Gaps = 15/457 (3%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
L P +PR+VA++GA++ ++G RN F G I PVNP EI G Y
Sbjct: 14 LTPLIQPRSVAVVGASSDPHRIGGRPIAYMLRNG----FTGRILPVNPNRTEIQGLPAYA 69
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
V LP+ D+A+IA+PAP V ET++ + KG ++ I+ + GF E+GEEG M+ I+E
Sbjct: 70 SVDALPEAPDVAIIAVPAPQVLETVQVLGRKGARSAIVFSSGFSEVGEEGVAMQDAIVEA 129
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAM 189
ARA +R++GPN +GV+ + G F + P +G + +QSGA+ A +L +
Sbjct: 130 ARAANMRLLGPNALGVFNANLGYYAFFSTSLERGIPLAGRVGIATQSGAYGAHLLGLSRQ 189
Query: 190 AGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI-K 248
G+G V+ GN+ DV D + + + E+ V+ Y E +++ F+ + + K
Sbjct: 190 RGLGTPICVATGNEADVTLGDAIGWLVESPEVDVVMAYAESIRNVDSFLAALEAAHRAGK 249
Query: 249 PIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCK 308
P+I K GR+E G +AA SHT SLAG D + DAV ++RA E + D+A +
Sbjct: 250 PVILHKVGRSELGGRAAMSHTASLAGDDKVLDAVLADYAVVRARTTEELVDIAYLATQRI 309
Query: 309 LPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVG 368
+P + +G+IT GGAG++ SDA GL + + EE LK+R +A NP D
Sbjct: 310 IPVNNSLGMITVSGGAGIIVSDAAEDVGLPMPPMPEEAQARLKQRL-HYASPLNPVDCTA 368
Query: 369 D--TDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAK-KSDKP--IV 423
D E+ + D + LI F + +A+ K+D P +
Sbjct: 369 QALNDLSLVHDFTESMVVDGGYRS--LIAFFTQAGTAASIGPRLAEQFARIKADHPDRLF 426
Query: 424 VVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGL 460
VVS+ G + ++ G ++ P R VRA+ +
Sbjct: 427 VVSVMG--EGEELAPYQKAGFALFEDPTRAVRAIQAM 461
>dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in UNG 3' region
[Escherichia coli]
Length = 612
Score = 227 bits (572), Expect = 3e-58
Identities = 131/459 (28%), Positives = 234/459 (50%), Gaps = 23/459 (5%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
L P+++A+IGA+ K + G ++ RN G F G + PV P + G +
Sbjct: 6 LEALLRPKSIAVIGASMKPNRAGYLMM----RNLLAGGFNGPVLPVTPAWKAVLGVLAWP 61
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
D++ LP DLAV+ A ++++ EKG K II++ + +++
Sbjct: 62 DIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQ--------HEDLRAC 113
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAM 189
A + +R++GPN +G+ AP G++ F P K G +AFISQS A + +LDWA
Sbjct: 114 ALRHNMRLLGPNSLGLLAPWQGLNASFSPVPI----KRGKLAFISQSAAVSNTILDWAQQ 169
Query: 190 AGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKP 249
+G ++ G+ +D+D +L++Y A+D + + Y+E + D R+F+ A+ ++ KP
Sbjct: 170 RKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKP 229
Query: 250 IIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKL 309
I+ +KSGR+ AA + AG D +DA ++ G++R +D +F + + +
Sbjct: 230 ILVIKSGRSP----AAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRP 285
Query: 310 PKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGD 369
+GDR+ II++G +A DA+ KLA LSEET + L++ P H + NP D+ D
Sbjct: 286 LRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDD 345
Query: 370 TDAERYRLALEAFIKDPNVDAILLI--VLFQVPLLDEKEV-IDIITDYAKKSDKPIVVVS 426
+E Y L+ + + DA+++I P + +V I+ + + + ++
Sbjct: 346 ASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNW 405
Query: 427 MGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAK 465
G + + + ++ E G+P Y TPE + A +V Y +
Sbjct: 406 CGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRR 444
>sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA INTERGENIC REGION
>gi|7466397|pir||G65036 hypothetical protein b2584 -
Escherichia coli (strain K-12)
>gi|1788938|gb|AAC75637.1| (AE000344) orf, hypothetical
protein [Escherichia coli K12]
Length = 886
Score = 227 bits (572), Expect = 3e-58
Identities = 131/459 (28%), Positives = 234/459 (50%), Gaps = 23/459 (5%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
L P+++A+IGA+ K + G ++ RN G F G + PV P + G +
Sbjct: 6 LEALLRPKSIAVIGASMKPNRAGYLMM----RNLLAGGFNGPVLPVTPAWKAVLGVLAWP 61
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
D++ LP DLAV+ A ++++ EKG K II++ + +++
Sbjct: 62 DIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQ--------HEDLRAC 113
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAM 189
A + +R++GPN +G+ AP G++ F P K G +AFISQS A + +LDWA
Sbjct: 114 ALRHNMRLLGPNSLGLLAPWQGLNASFSPVPI----KRGKLAFISQSAAVSNTILDWAQQ 169
Query: 190 AGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKIKP 249
+G ++ G+ +D+D +L++Y A+D + + Y+E + D R+F+ A+ ++ KP
Sbjct: 170 RKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKP 229
Query: 250 IIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCKL 309
I+ +KSGR+ AA + AG D +DA ++ G++R +D +F + + +
Sbjct: 230 ILVIKSGRSP----AAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRP 285
Query: 310 PKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTDVVGD 369
+GDR+ II++G +A DA+ KLA LSEET + L++ P H + NP D+ D
Sbjct: 286 LRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDD 345
Query: 370 TDAERYRLALEAFIKDPNVDAILLI--VLFQVPLLDEKEV-IDIITDYAKKSDKPIVVVS 426
+E Y L+ + + DA+++I P + +V I+ + + + ++
Sbjct: 346 ASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNW 405
Query: 427 MGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAK 465
G + + + ++ E G+P Y TPE + A +V Y +
Sbjct: 406 CGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRR 444
>pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946928|gb|AAG04406.1|AE004534_4
(AE004534) pimeloyl-CoA synthetase [Pseudomonas
aeruginosa]
Length = 715
Score = 215 bits (541), Expect = 1e-54
Identities = 120/357 (33%), Positives = 192/357 (53%), Gaps = 6/357 (1%)
Query: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYKVYH 69
L P EPR+VA+IGA++ ++G R+ + G I PVNP EI G +
Sbjct: 18 LTPLIEPRSVAVIGASSDPTRIGGRPIAYMLRHG----YAGQILPVNPNRAEIQGLPAFA 73
Query: 70 DVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEI 129
V+ELP D+A++A+PAP V ET++ + +G ++ I+ + GF E+GE G M+ ++
Sbjct: 74 SVAELPQAPDVAIVAVPAPQVLETVRALGRQGARSAIVFSSGFSEVGEAGAAMQDAVVAA 133
Query: 130 ARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAAM 189
AR +G+R++GPN +G + + G F + P G + +QSGA+ A +L A
Sbjct: 134 AREHGMRLLGPNALGAFNSNLGYYAFFSTSLERGVPLPGRVGIATQSGAYGAHLLGMARQ 193
Query: 190 AGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVTKI-K 248
+G V+ GN+ DV D + + + EI V+ Y E +++ F+ + + K
Sbjct: 194 RRLGTPICVATGNEADVTLGDSIGWLVESPEIDVVMAYAESIRNVDSFLAALEAAHRAGK 253
Query: 249 PIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFAKCK 308
P+I K GR+ G++AA SHT SLAG D + DAV +IRA E + D+A +
Sbjct: 254 PVILHKVGRSALGSRAALSHTASLAGDDKVLDAVLGDYAVIRARTTEELMDIAYLATRRI 313
Query: 309 LPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTD 365
P G+ +G+IT GGAG++ SD + GL + + + + LK R + + NP D
Sbjct: 314 YPVGNSLGMITVSGGAGIIVSDVAEEVGLPMPPMPDMAQERLKARLSFASPI-NPVD 369
>pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelicolor
>gi|2661695|emb|CAA15799.1| (AL009204) hypothetical
protein SC9B10.09 [Streptomyces coelicolor A3(2)]
Length = 1039
Score = 170 bits (426), Expect = 3e-41
Identities = 119/436 (27%), Positives = 198/436 (45%), Gaps = 55/436 (12%)
Query: 15 EPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVN----PKLDEIDGYKVYHD 70
+P +VA++GA G VG I N + + G + G +Y VN + E+DG
Sbjct: 211 QPGSVAVVGAGRTPGGVGRSILGNIR---DAG-YTGRLYAVNRAFPEDMKELDGVPACRS 266
Query: 71 VSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEILEIA 130
V ++ DLAV+ +PA VP+ + E G++ +++I+ G+ + G EG+ ++ ++ A
Sbjct: 267 VGDIDGPVDLAVVTVPAEHVPDVVTACGEHGVQGLVVISAGYADSGPEGRERQRALVRHA 326
Query: 131 RANGIRVIGPNCVGVY--APDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLDWAA 188
R G+R+IGPN G+ +PD ++ PE P++G I +QSGA A+L
Sbjct: 327 RTYGMRIIGPNAFGIINTSPDVRLNASLAPE----MPRAGRIGLFAQSGAIGIALLSRLH 382
Query: 189 MAG------IGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAK 242
G G+ VS GN+ DV D+++Y+ D + V Y+E + + RKF A+
Sbjct: 383 RRGGGVTGVTGVSTFVSSGNRADVSGNDVLQYWYDDPQTDVALMYLESIGNPRKFTRLAR 442
Query: 243 RVTKIKPIIALKSGRTEYGAKAASSH-TGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLA 301
R KP++ ++ R +G A H + A+ +Q G+IR + + D
Sbjct: 443 RTAAAKPLVVVQGAR--HGGVAPQGHAVRATRLPHATVSALLRQAGVIRVDTITDLVDAG 500
Query: 302 KAFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVG 361
A+ LP G R+ I+ + G++ DA GL+
Sbjct: 501 LLLARQPLPAGPRVAILGNSESLGLLTYDACLSEGLRPQP-------------------- 540
Query: 362 NPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKS--- 418
P D+ A+ + AL + D DA +V+ +P L E D A +S
Sbjct: 541 -PLDLTTAASADDFHAALARALADDTCDA---VVVTAIPTLGEGAAGDAALAEALRSAAA 596
Query: 419 ---DKPIVV--VSMGG 429
KP++V V +GG
Sbjct: 597 AVPTKPVLVVHVELGG 612
>pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951261|gb|AAG08363.1|AE004910_10
(AE004910) hypothetical protein [Pseudomonas aeruginosa]
Length = 696
Score = 152 bits (381), Expect = 6e-36
Identities = 120/410 (29%), Positives = 189/410 (45%), Gaps = 23/410 (5%)
Query: 7 REQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEIDGYK 66
RE L+ PR +A IG G + KR E G F G ++ VNP+ E++G
Sbjct: 3 RENLKRLLAPRHLAFIG--------GRGMARALKRCAEGG-FAGQLWLVNPQHAELEGVP 53
Query: 67 VYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQEI 126
V++LP D A +A + + +A KG I GF E GE+G +++ +
Sbjct: 54 CVASVADLPCGPDAAFVATNRELTLDAVAALAAKGAGGAICYASGFAETGEQGLAVQRRL 113
Query: 127 LEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFA--AAML 184
L A A + ++GPNC G+ D P R +A ++QSG FA +M
Sbjct: 114 L--AAAGEMALLGPNCYGLL--DYLHGAALWPVAHGGRQVERGVAVLTQSGNFAYNLSMS 169
Query: 185 DWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETA-KR 243
D + + M S GN+ + A+LM+ + + + ++EG+K+ F A K
Sbjct: 170 D----RSLPVAYMASVGNQAQLGIAELMDVLLDEPRVTAIGLHLEGLKNVPGFARAAYKA 225
Query: 244 VTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKA 303
+ K P+IALK+G ++ GA A SHT SLAG D +YD++F++ G+IR + KA
Sbjct: 226 LQKGVPVIALKTGVSKIGAALALSHTSSLAGSDALYDSLFERLGVIRVSGPVSFVETLKA 285
Query: 304 FAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNP 363
A LP G + + GG + +D + GL L L P +A + NP
Sbjct: 286 AACGHLPGGPSLVALACSGGDAGLIADYAERNGLGLPSFDAGQRDELAGVLPDYANIANP 345
Query: 364 TDVVGDT--DAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDII 411
D DA L++ ++ P DA LL++ + E+ D++
Sbjct: 346 LDFTTAIWGDAAALEEMLDSALRSP-ADAALLVLDYPGEETGERPQCDLL 394
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178620574
Number of Sequences: 2977
Number of extensions: 7904996
Number of successful extensions: 20320
Number of sequences better than 1.0e-10: 30
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20166
Number of HSP's gapped (non-prelim): 32
length of query: 472
length of database: 189,106,746
effective HSP length: 57
effective length of query: 415
effective length of database: 154,992,987
effective search space: 64322089605
effective search space used: 64322089605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)