BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2114 (PAB2114) DE:Hypothetical protein
         (212 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75148 hypothetical protein PAB2114 - Pyrococcus abyssi (st...   450  e-126
pir||H71188 hypothetical protein PH1784 - Pyrococcus horikoshii ...   370  e-102
gb|AAG14895.1|AF298156_1 (AF298156) metallopeptidase-2 [Pyrococc...   323  9e-88

>pir||H75148 hypothetical protein PAB2114 - Pyrococcus abyssi (strain Orsay)
           >gi|5457781|emb|CAB49271.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 212
           
 Score =  450 bits (1146), Expect = e-126
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MDKIAFVYMGGDEFEWLFFEVYDRVNRYLRDVGLGVTLVYAGRIKLPPGMLIRVETEDGY 60
           MDKIAFVYMGGDEFEWLFFEVYDRVNRYLRDVGLGVTLVYAGRIKLPPGMLIRVETEDGY
Sbjct: 1   MDKIAFVYMGGDEFEWLFFEVYDRVNRYLRDVGLGVTLVYAGRIKLPPGMLIRVETEDGY 60

Query: 61  VKMYSFEAVVEALYGKLVEMKNSVNDDSFTKIFGITTLPIGSRKQYFEIYKKYLGIEVSI 120
           VKMYSFEAVVEALYGKLVEMKNSVNDDSFTKIFGITTLPIGSRKQYFEIYKKYLGIEVSI
Sbjct: 61  VKMYSFEAVVEALYGKLVEMKNSVNDDSFTKIFGITTLPIGSRKQYFEIYKKYLGIEVSI 120

Query: 121 GNYNVLVLSIKPFYTENRELFIERVFKGVLHELGHLYGLPHCNNDCVMNPPEDLREWDLR 180
           GNYNVLVLSIKPFYTENRELFIERVFKGVLHELGHLYGLPHCNNDCVMNPPEDLREWDLR
Sbjct: 121 GNYNVLVLSIKPFYTENRELFIERVFKGVLHELGHLYGLPHCNNDCVMNPPEDLREWDLR 180

Query: 181 APTYCNPCLMELKRKLKPKPPLLHRAYGCSHC 212
           APTYCNPCLMELKRKLKPKPPLLHRAYGCSHC
Sbjct: 181 APTYCNPCLMELKRKLKPKPPLLHRAYGCSHC 212


>pir||H71188 hypothetical protein PH1784 - Pyrococcus horikoshii
           >gi|3258220|dbj|BAA30903.1| (AP000007) 212aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 212
           
 Score =  370 bits (941), Expect = e-102
 Identities = 166/212 (78%), Positives = 189/212 (88%)

Query: 1   MDKIAFVYMGGDEFEWLFFEVYDRVNRYLRDVGLGVTLVYAGRIKLPPGMLIRVETEDGY 60
           M++IAFVYMGGDEF+WLFFEVYDRV R+++DV LG+  +YAG+IKLPPGML+RV   +GY
Sbjct: 1   MERIAFVYMGGDEFKWLFFEVYDRVRRFMKDVNLGIIPIYAGKIKLPPGMLVRVNAGNGY 60

Query: 61  VKMYSFEAVVEALYGKLVEMKNSVNDDSFTKIFGITTLPIGSRKQYFEIYKKYLGIEVSI 120
           +KMY FEAVVEALYGKLVEM++ V DD+ TKIFGITT PIGSRKQYF+IYKKYLGI+VSI
Sbjct: 61  IKMYPFEAVVEALYGKLVEMRDDVKDDTLTKIFGITTFPIGSRKQYFDIYKKYLGIQVSI 120

Query: 121 GNYNVLVLSIKPFYTENRELFIERVFKGVLHELGHLYGLPHCNNDCVMNPPEDLREWDLR 180
           GNYNVL LSIKPFYTENRELF+ERVFKGVLHE+GHLYGL HC NDCVMNPP DL++WD R
Sbjct: 121 GNYNVLALSIKPFYTENRELFVERVFKGVLHEIGHLYGLSHCKNDCVMNPPNDLKDWDRR 180

Query: 181 APTYCNPCLMELKRKLKPKPPLLHRAYGCSHC 212
           AP+YCN CL ELKRK+KP P LLHRAY C HC
Sbjct: 181 APSYCNSCLRELKRKVKPMPLLLHRAYECFHC 212


>gb|AAG14895.1|AF298156_1 (AF298156) metallopeptidase-2 [Pyrococcus furiosus]
           Length = 204
           
 Score =  323 bits (820), Expect = 9e-88
 Identities = 148/202 (73%), Positives = 173/202 (85%)

Query: 1   MDKIAFVYMGGDEFEWLFFEVYDRVNRYLRDVGLGVTLVYAGRIKLPPGMLIRVETEDGY 60
           MD IAF YMGG E+EWLFFEVYDRV R+ RDV L + +VYAG+I LPPG LIRVET  G+
Sbjct: 1   MDTIAFAYMGGKEYEWLFFEVYDRVRRFYRDVRLPINIVYAGKIILPPGTLIRVETASGF 60

Query: 61  VKMYSFEAVVEALYGKLVEMKNSVNDDSFTKIFGITTLPIGSRKQYFEIYKKYLGIEVSI 120
           V MYSFEAVVEALYGKLVEM++ VNDDS TKIFGITT PIGSR +YF+IYKKYLGI+V++
Sbjct: 61  VNMYSFEAVVEALYGKLVEMRDDVNDDSITKIFGITTFPIGSRDRYFDIYKKYLGIQVNV 120

Query: 121 GNYNVLVLSIKPFYTENRELFIERVFKGVLHELGHLYGLPHCNNDCVMNPPEDLREWDLR 180
           G+Y+VL LSIKPF+TEN+ LFIERVFKGVLHE+GHLYGL HC+ DCVMNPP+D+++WDLR
Sbjct: 121 GDYHVLALSIKPFFTENKYLFIERVFKGVLHEIGHLYGLSHCHEDCVMNPPKDIKDWDLR 180

Query: 181 APTYCNPCLMELKRKLKPKPPL 202
            PTYCN CL +LK K +  P L
Sbjct: 181 TPTYCNTCLRKLKNKEELMPKL 202


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.145    0.455 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87581124
Number of Sequences: 2977
Number of extensions: 3793600
Number of successful extensions: 7654
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7651
Number of HSP's gapped (non-prelim): 3
length of query: 212
length of database: 189,106,746
effective HSP length: 48
effective length of query: 164
effective length of database: 160,379,370
effective search space: 26302216680
effective search space used: 26302216680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 163 (67.9 bits)