BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2117 (PAB2117) DE:Hypothetical protein
         (137 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75148 hypothetical protein PAB2117 - Pyrococcus abyssi (st...   270  4e-72
pir||D71188 hypothetical protein PH1781 - Pyrococcus horikoshii ...   219  1e-56

>pir||D75148 hypothetical protein PAB2117 - Pyrococcus abyssi (strain Orsay)
           >gi|5457777|emb|CAB49267.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 137
           
 Score =  270 bits (684), Expect = 4e-72
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MIEVGLFDKLKKGEPQKKMPSILKDKVKQVEKSPEEVELVPVEEDTLAREILKPKVTYIK 60
           MIEVGLFDKLKKGEPQKKMPSILKDKVKQVEKSPEEVELVPVEEDTLAREILKPKVTYIK
Sbjct: 1   MIEVGLFDKLKKGEPQKKMPSILKDKVKQVEKSPEEVELVPVEEDTLAREILKPKVTYIK 60

Query: 61  KISISTYADLKNVSEEISAGNIVIADLTPLEPKPDLLSKVAEQLRMTAETFGWDIAKLCK 120
           KISISTYADLKNVSEEISAGNIVIADLTPLEPKPDLLSKVAEQLRMTAETFGWDIAKLCK
Sbjct: 61  KISISTYADLKNVSEEISAGNIVIADLTPLEPKPDLLSKVAEQLRMTAETFGWDIAKLCK 120

Query: 121 NESKVIITPPNIKIFKE 137
           NESKVIITPPNIKIFKE
Sbjct: 121 NESKVIITPPNIKIFKE 137


>pir||D71188 hypothetical protein PH1781 - Pyrococcus horikoshii
           >gi|3258216|dbj|BAA30899.1| (AP000007) 134aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 134
           
 Score =  219 bits (551), Expect = 1e-56
 Identities = 110/137 (80%), Positives = 123/137 (89%), Gaps = 3/137 (2%)

Query: 1   MIEVGLFDKLKKGEPQKKMPSILKDKVKQVEKSPEEVELVPVEEDTLAREILKPKVTYIK 60
           M++VGLFDKLKK + Q+K    LK+KVK+    P EVELVPVEED L +EI+KPKVTYIK
Sbjct: 1   MVKVGLFDKLKKSDTQRKALPSLKEKVKE---EPSEVELVPVEEDKLVKEIIKPKVTYIK 57

Query: 61  KISISTYADLKNVSEEISAGNIVIADLTPLEPKPDLLSKVAEQLRMTAETFGWDIAKLCK 120
           K+SISTYADLKNVSEEISAGNIVIADLTPLE KP+LL+KVAEQLRMTAETFGWDIAKLCK
Sbjct: 58  KVSISTYADLKNVSEEISAGNIVIADLTPLESKPELLTKVAEQLRMTAETFGWDIAKLCK 117

Query: 121 NESKVIITPPNIKIFKE 137
           NESKVIITPPNI+IF+E
Sbjct: 118 NESKVIITPPNIRIFRE 134


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.311    0.133    0.358 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48693414
Number of Sequences: 2977
Number of extensions: 1861435
Number of successful extensions: 6145
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6142
Number of HSP's gapped (non-prelim): 2
length of query: 137
length of database: 189,106,746
effective HSP length: 59
effective length of query: 78
effective length of database: 153,796,013
effective search space: 11996089014
effective search space used: 11996089014
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 160 (66.7 bits)