BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2119 (PAB2119) DE:Hypothetical protein
(258 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75148 hypothetical protein PAB2119 - Pyrococcus abyssi (st... 527 e-149
pir||B71188 hypothetical protein PH1779 - Pyrococcus horikoshii ... 499 e-140
pir||A69000 conserved hypothetical protein MTH1 - Methanobacteri... 192 4e-48
gi|11499510 conserved hypothetical protein [Archaeoglobus fulgid... 178 4e-44
pir||H72779 hypothetical protein APE0226 - Aeropyrum pernix (str... 128 6e-29
gb|AAG19935.1| (AE005077) Vng1688c [Halobacterium sp. NRC-1] 121 8e-27
gi|11427800 hypothetical protein [Homo sapiens] 119 4e-26
pir||T14751 hypothetical protein DKFZp566D143.1 - human (fragmen... 118 5e-26
gb|AAF58861.1| (AE003831) CG12128 gene product [Drosophila melan... 98 8e-20
sp|P20571|YL31_HALMA HYPOTHETICAL 23.1 KD PROTEIN IN HMAL3 5'REG... 87 3e-16
pir||T43814 conserved hypothetical protein [imported] - Halobact... 85 1e-15
sp|Q10950|YMP6_CAEEL HYPOTHETICAL 43.0 KD PROTEIN B0361.6 IN CHR... 75 7e-13
>pir||B75148 hypothetical protein PAB2119 - Pyrococcus abyssi (strain Orsay)
>gi|5457775|emb|CAB49265.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 258
Score = 527 bits (1342), Expect = e-149
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIKTLLEYA 60
MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIKTLLEYA
Sbjct: 1 MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIKTLLEYA 60
Query: 61 ETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGKKLFADIGL 120
ETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGKKLFADIGL
Sbjct: 61 ETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGKKLFADIGL 120
Query: 121 DRPALVKGIADEGRGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDVVI 180
DRPALVKGIADEGRGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDVVI
Sbjct: 121 DRPALVKGIADEGRGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDVVI 180
Query: 181 ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEILKEFNERYEFDLVLNTIPGQKTKTVR 240
ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEILKEFNERYEFDLVLNTIPGQKTKTVR
Sbjct: 181 ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEILKEFNERYEFDLVLNTIPGQKTKTVR 240
Query: 241 TEEAVLATLAIFNFMRRD 258
TEEAVLATLAIFNFMRRD
Sbjct: 241 TEEAVLATLAIFNFMRRD 258
>pir||B71188 hypothetical protein PH1779 - Pyrococcus horikoshii
>gi|3258214|dbj|BAA30897.1| (AP000007) 258aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 258
Score = 499 bits (1272), Expect = e-140
Identities = 243/258 (94%), Positives = 251/258 (97%)
Query: 1 MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIKTLLEYA 60
MSWHVFIPDSLLEET+D KLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIKTLLEY
Sbjct: 1 MSWHVFIPDSLLEETSDLKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIKTLLEYV 60
Query: 61 ETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGKKLFADIGL 120
ETPQYLRKR+FPIMPELRYAGVMPPLQIPSHKEK SPRIGEIREGFAFRRGKK+FADIGL
Sbjct: 61 ETPQYLRKRIFPIMPELRYAGVMPPLQIPSHKEKTSPRIGEIREGFAFRRGKKIFADIGL 120
Query: 121 DRPALVKGIADEGRGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDVVI 180
DRPALVKGIA+EGRGTFKIISVKPLRVVPAEPPGYWGYKVHWS+KSL KTLKNADLDVVI
Sbjct: 121 DRPALVKGIAEEGRGTFKIISVKPLRVVPAEPPGYWGYKVHWSKKSLAKTLKNADLDVVI 180
Query: 181 ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEILKEFNERYEFDLVLNTIPGQKTKTVR 240
ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEIL+EF E+YEFDLVLNTIP QKT+TVR
Sbjct: 181 ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEILEEFKEKYEFDLVLNTIPNQKTRTVR 240
Query: 241 TEEAVLATLAIFNFMRRD 258
TEEAVLATLAIFN MRRD
Sbjct: 241 TEEAVLATLAIFNIMRRD 258
>pir||A69000 conserved hypothetical protein MTH1 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621037|gb|AAB84510.1| (AE000795) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 268
Score = 192 bits (483), Expect = 4e-48
Identities = 117/263 (44%), Positives = 165/263 (62%), Gaps = 22/263 (8%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYK--AGGRDGRLIKTLLEYAET 62
+FIPDSL ET D K+K YKV IARA +IFGV+ I IY A G + R I+ +L Y +T
Sbjct: 8 IFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADG-EARFIRDILTYMDT 66
Query: 63 PQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGKK-LFADIGLD 121
PQYLR+++FPIM EL++ G++PPL+ P H G P GE R+G +R KK DIG D
Sbjct: 67 PQYLRRKVFPIMRELKHVGILPPLRTP-HHPTGKPVTGEYRQGLTVKRVKKGTLVDIGAD 125
Query: 122 RPALVKGIADEGR-GTFKIISV-KPLRVVPAEPPG-YWGYKVHWSRKSLVKTLKNADLDV 178
+ AL + R +F+++ + K + + P EP YWGY+V +R++L ++LK DV
Sbjct: 126 KLALCREKLTVNRIMSFRVVRLGKEILIEPDEPEDRYWGYEVLDTRRNLAESLKTVGADV 185
Query: 179 VIATSRRGVDVR----DAEVPLEG--EVGIVFGSPRKGVFEILKEFNERYEFDLVLNTIP 232
V+ATSR + + + + G E I+FG P KG+ EI + D+ +NT+P
Sbjct: 186 VVATSRNASPITSILDEVKTRMRGAREAAILFGGPYKGLPEI--------DADIWVNTLP 237
Query: 233 GQKTKTVRTEEAVLATLAIFNFM 255
GQ T+TVRTEEAVLATL++FN +
Sbjct: 238 GQCTETVRTEEAVLATLSVFNML 260
>gi|11499510 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429564|pir||E69490 conserved hypothetical protein
AF1926 - Archaeoglobus fulgidus
>gi|2648620|gb|AAB89330.1| (AE000971) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 256
Score = 178 bits (448), Expect = 4e-44
Identities = 112/254 (44%), Positives = 148/254 (58%), Gaps = 13/254 (5%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRD-GRLIKTLLEYAETP 63
+ IP S L D K+K YKVG IARA A+F V+ I IY D I +LEY ETP
Sbjct: 4 IAIPSSALINERDEKIKTYKVGLIARAAAVFRVDEIIIYYDPILDESDFIAEILEYLETP 63
Query: 64 QYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFA--FRRGKKLFADIGLD 121
QYLRK +FP+ L+YAG++PPL IPSH+ K ++GE+REG + D+G+D
Sbjct: 64 QYLRKHIFPLKKSLKYAGLLPPLAIPSHRSK-HLKVGELREGVVRHVAPDGTRWVDVGID 122
Query: 122 RPALVKGIADEG-RGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDVVI 180
A +K A++G R T +I S PLRV AEP YWGY+V R + KN ++
Sbjct: 123 ALAPMKSDAEKGARVTVRICSKTPLRVEEAEPQEYWGYRVKKLRLEELVKRKN-----LV 177
Query: 181 ATSRRGVDVRDAEVPLEGEVGIVFGSPRKGVFEILKEFNERYEFDLVLNTIPGQKTKTVR 240
TSR+ V+ L +V +VFG+P +GVFEI K E + N +P Q TKTVR
Sbjct: 178 VTSRKCEVVKPP--ALRRDVTLVFGNPEEGVFEIAKRLGVEMEAE-CWNVVPNQGTKTVR 234
Query: 241 TEEAVLATLAIFNF 254
EEA+ ATL++ NF
Sbjct: 235 LEEAIFATLSLVNF 248
>pir||H72779 hypothetical protein APE0226 - Aeropyrum pernix (strain K1)
>gi|5103617|dbj|BAA79138.1| (AP000058) 297aa long
hypothetical protein [Aeropyrum pernix]
Length = 297
Score = 128 bits (319), Expect = 6e-29
Identities = 94/261 (36%), Positives = 137/261 (52%), Gaps = 23/261 (8%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYK---AGGRDGRLIKTLLEYAE 61
V +P S+L LK K GQI R AI+ V+ I +++ + R RL++ LL Y
Sbjct: 28 VALPSSILRVEPTLLLKTLKAGQIGRVAAIYRVDEIAVFEDPDSSPRLSRLLQLLLNYQA 87
Query: 62 TPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFR-RGKKLFADIGL 120
TP +L+KR+FP+ EL+YA +MPPL+IPSH P++G I +G+ GK +G
Sbjct: 88 TPPHLKKRVFPLRRELKYASLMPPLKIPSHTVPAEPKVGAILDGYVESCSGKSCRVFLGS 147
Query: 121 DRPALVKGIADEGR-GTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDV- 178
+++G A G T +I + R+V + WG + S K L+ A
Sbjct: 148 MGYGVLRGRARPGDVVTVRIGEISGGRIVLEK--ASWGELYYGFSVSRFKRLEEAVTSFR 205
Query: 179 -----VIATSRRGVDVRD-----AEVPLEGEVGIVFGSPRKGVFEILKEFNERYEFDLVL 228
V+AT + G+ + AE+P + +VFG P KGV E+ Y +D V+
Sbjct: 206 RRGYRVVATDKNGLCPPESWKILAEIP-SAKTLVVFGGPYKGVL----EYTNPYLYDGVV 260
Query: 229 NTIPGQKTKTVRTEEAVLATL 249
N IP Q T+TVRTEEA+LATL
Sbjct: 261 NVIPRQGTETVRTEEALLATL 281
>gb|AAG19935.1| (AE005077) Vng1688c [Halobacterium sp. NRC-1]
Length = 283
Score = 121 bits (301), Expect = 8e-27
Identities = 93/279 (33%), Positives = 139/279 (49%), Gaps = 33/279 (11%)
Query: 1 MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIY--KAGGRD--GRLIKTL 56
M+ V +P SL+ E D + K+G +ARA A+F ++ + ++ + G R G ++T+
Sbjct: 1 MTRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVVVFPDEDGERQWGGGFVETV 60
Query: 57 LEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGK--KL 114
L YA TP YLRK F EL YAGV+PPL++ S S G +R+G + G ++
Sbjct: 61 LRYAATPPYLRKEAFDTRDELAYAGVLPPLRLSSWTGSDSSGSGSLRQGIVTQVGSEGRV 120
Query: 115 FADIGLDRPALV-----KGIADEGRGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVK 169
+ G+ P + +++ R T ++ S +P+R + P G+ V R L
Sbjct: 121 RVNCGMQHPISLHEPPGMAVSEGERVTIRVSSRRPVRAKLVDDP-LPGFSV--ERTGLGD 177
Query: 170 TLKNADLDVVIATSRRGVDVRDAEVPLEGE------VGIVFGSPRKGVFEIL----KEFN 219
L +D V IATSR G + A + E V + FG+P +G+ +L N
Sbjct: 178 ALDRSDAGVRIATSRHGEPLSVASLGGYRERIARDGVTVAFGAPERGLPPMLGVSADAVN 237
Query: 220 ERY---------EFDLVLNTIPGQKTKTVRTEEAVLATL 249
E FD LNTIP Q ++ VRTEEAVLATL
Sbjct: 238 ESVTDSSADAPARFDAWLNTIPDQGSEVVRTEEAVLATL 276
>gi|11427800 hypothetical protein [Homo sapiens]
Length = 376
Score = 119 bits (295), Expect = 4e-26
Identities = 91/289 (31%), Positives = 134/289 (45%), Gaps = 46/289 (15%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIK---------- 54
V +P S+L+ P+L+ Y GQIARACAIF V+ I ++ G+D + ++
Sbjct: 77 VALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVGKKG 136
Query: 55 -------TLLEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFA 107
+L+Y E PQYLRK FP +L++AG++ PL P H + E REG
Sbjct: 137 QACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEE--SEFREGIV 194
Query: 108 F----RRGKKLFADIGLDRPALVKGIADEG-RGTFKI-------ISVKPLRVVPAEPPG- 154
R G F + G+ + + + G R T ++ +VV ++ P
Sbjct: 195 VDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSSQDPRT 254
Query: 155 ----YWGYKVHWSRKSLVKTLKNADL----DVVIATSRRGVDVRDAEVPLEGEVGIVFGS 206
YWGY V + L A D+ I TS RG DV A++P +VFG
Sbjct: 255 KAGLYWGYTVRLA-SCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGG 313
Query: 207 PR-----KGVFEILKEFNERYEFDLVLNTIPGQKTKTVRTEEAVLATLA 250
+ L+ FDL +NT PGQ ++T+RTEEA+L +LA
Sbjct: 314 LQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILISLA 362
>pir||T14751 hypothetical protein DKFZp566D143.1 - human (fragment)
>gi|5817110|emb|CAB53671.1| (AL110193) hypothetical
protein [Homo sapiens]
Length = 389
Score = 118 bits (294), Expect = 5e-26
Identities = 91/289 (31%), Positives = 134/289 (45%), Gaps = 46/289 (15%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGRDGRLIK---------- 54
V +P S+L+ P+L+ Y GQIARACAIF V+ I ++ G+D + ++
Sbjct: 90 VALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFRGVGKKG 149
Query: 55 -------TLLEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFA 107
+L+Y E PQYLRK FP +L++AG++ PL P H + E REG
Sbjct: 150 QACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEE--SEFREGVV 207
Query: 108 F----RRGKKLFADIGLDRPALVKGIADEG-RGTFKI-------ISVKPLRVVPAEPPG- 154
R G F + G+ + + + G R T ++ +VV ++ P
Sbjct: 208 VDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSSQDPRT 267
Query: 155 ----YWGYKVHWSRKSLVKTLKNADL----DVVIATSRRGVDVRDAEVPLEGEVGIVFGS 206
YWGY V + L A D+ I TS RG DV A++P +VFG
Sbjct: 268 KAGLYWGYTVRLA-SCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQLPNFRHALVVFGG 326
Query: 207 PR-----KGVFEILKEFNERYEFDLVLNTIPGQKTKTVRTEEAVLATLA 250
+ L+ FDL +NT PGQ ++T+RTEEA+L +LA
Sbjct: 327 LQGLEAGADADPNLEVAEPSVLFDLYVNTCPGQGSRTIRTEEAILISLA 375
>gb|AAF58861.1| (AE003831) CG12128 gene product [Drosophila melanogaster]
Length = 485
Score = 98.3 bits (241), Expect = 8e-20
Identities = 95/297 (31%), Positives = 132/297 (43%), Gaps = 55/297 (18%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWI---------------YKAGGRD 49
+ +P S+LE +L+AY GQIARA IF V + + Y+A G
Sbjct: 76 IAVPGSILENAQSNELRAYVAGQIARAACIFRVNEVIVFDDVGIATARETKRSYEADGEG 135
Query: 50 GRL---------IKTLLEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIG 100
+ +L+Y E PQYLRK FP+ +L+Y+G++ PL P H + S
Sbjct: 136 SSTGTVRSSSLQLARILQYLECPQYLRKYFFPLHKDLKYSGLLNPLDTPHHLRQQSK--F 193
Query: 101 EIREGFAFRRGKK---LFADIGLDRPALV-KGIADEGRGTFKI----ISVKPLR---VVP 149
REG + K +A++GL LV K I R T K+ S + R V P
Sbjct: 194 RYREGVICDKKAKEGHSYANVGLLNDVLVDKAIEPGVRVTVKMEPQSESCRKQRGTLVSP 253
Query: 150 AEPPG----YWGYKV---HWSRKSLVKTLKNADLDVVIATSRRGVDVRDAEVPLE----G 198
EP YWGY+V H + K+ DV + TS RG +V EVP
Sbjct: 254 DEPRRETGVYWGYQVRIAHSMSEIFTKSPYATGYDVTVGTSDRGTNVH--EVPNRSYNFN 311
Query: 199 EVGIVFG-----SPRKGVFEILKEFNERYEFDLVLNTIPGQKTKTVRTEEAVLATLA 250
+ IVFG E L + FD +N +P Q ++T+RTEEA+L LA
Sbjct: 312 HMLIVFGGLQGLESALANDEKLTVDDPELLFDHYVNVLPRQGSRTIRTEEALLIALA 368
>sp|P20571|YL31_HALMA HYPOTHETICAL 23.1 KD PROTEIN IN HMAL3 5'REGION (ORF1)
>gi|80995|pir||A35063 hypothetical protein 1 (HmaL3 5'
region) - Haloarcula marismortui
>gi|1181552|gb|AAA86857.1| (J05222) ribosomal protein
[Haloarcula marismortui]
Length = 214
Score = 86.6 bits (211), Expect = 3e-16
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 1 MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYK----AGGRDGRLIKTL 56
M+ V +P SL E D + K+G +ARA A++ V+ + +Y AG + ++T+
Sbjct: 1 MTTSVLVPSSLAREAEDRREATRKLGYVARAAAVYRVDRLTVYPDPDGAGKWEDGFVETV 60
Query: 57 LEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGK--KL 114
L YA TP +LRK ++ EL Y GV+PPL++ S GS G +R+G G ++
Sbjct: 61 LRYAATPPHLRKEMWGKRDELEYVGVLPPLRVRSQTGSGSEGSGSLRQGIVTEVGADGRV 120
Query: 115 FADIGLDRPALVKGIADEG-----RGTFKIISVKPLRVVPAEPPGYWGYKVHWSRKSLVK 169
+ G+ P + AD R T ++ S +P+R + P G+ V L
Sbjct: 121 RVNCGMQHPISLPVPADMDVEQGERVTVRVSSRRPVRAKLVDAP-TTGFDV--VAADLDA 177
Query: 170 TLKNADLDVVIATSRRGVDV 189
L D + IA+SR G V
Sbjct: 178 ALSRDDAGLTIASSRYGEPV 197
>pir||T43814 conserved hypothetical protein [imported] - Halobacterium salinarum
>gi|2425174|dbj|BAA22268.1| (AB006961) unnamed protein
product [Halobacterium halobium]
Length = 226
Score = 84.7 bits (206), Expect = 1e-15
Identities = 50/157 (31%), Positives = 84/157 (52%), Gaps = 11/157 (7%)
Query: 1 MSWHVFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIY--KAGGRD--GRLIKTL 56
M+ V +P SL+ E D + K+G +ARA A+F ++ + ++ + G R G ++T+
Sbjct: 14 MTRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVLVFPDEDGERQWGGGFVETV 73
Query: 57 LEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPRIGEIREGFAFRRGK--KL 114
L YA TP YLRK F EL YAGV+PPL++ S S G +R+G + G ++
Sbjct: 74 LRYAATPPYLRKEAFDTRDELAYAGVLPPLRLSSWTGSDSSGSGSLRQGIVTQVGSEGRV 133
Query: 115 FADIGLDRPALV-----KGIADEGRGTFKIISVKPLR 146
+ G+ P + +++ R T ++ S +P+R
Sbjct: 134 RVNCGMQHPISLHEPPGMAVSEGERVTIRVSSRRPVR 170
>sp|Q10950|YMP6_CAEEL HYPOTHETICAL 43.0 KD PROTEIN B0361.6 IN CHROMOSOME III
>gi|458954|gb|AAA50625.1| (U00031) similar to H.
marismortui hypothetical 23.1 kd protein in HMAL3 5'
region [Caenorhabditis elegans]
Length = 378
Score = 75.3 bits (182), Expect = 7e-13
Identities = 85/300 (28%), Positives = 124/300 (41%), Gaps = 57/300 (19%)
Query: 5 VFIPDSLLEETNDPKLKAYKVGQIARACAIFGVEHIWIYKAGGR--------------DG 50
+ +P L +L+ Y GQIARA ++ V+ I IY R G
Sbjct: 70 IAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGTWQG 129
Query: 51 RLIKT------------LLEYAETPQYLRKRLFPIMPELRYAGVMPPLQIPSHKEKGSPR 98
LI +LEY E PQYLRK LFPI L+ AG++ PL H K +
Sbjct: 130 NLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLD-AQHHLKYDEK 188
Query: 99 IGEIREGFAFRR----GKKLFADIGLDRPALVKGIADE----GRGTFKII---------- 140
REG ++ G+ +IGL++ + A + R T +I
Sbjct: 189 TLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEIKNLTEQCKLYR 248
Query: 141 -SVKPLRVVPAEPPGYWGYKVHWSRKSLVKTLKNADLDVVIATSRRGVDVRDAEVPL--E 197
S+ V E YWGY V L K L+ D+V S RG +V + +
Sbjct: 249 GSITSGATVTRETGLYWGYSVR-LMTGLQKVLQAKKFDIVAGVSPRGKLASQMDVCILNK 307
Query: 198 GEVGIVFGSPRKGV-----FEILKEFNERYE-FDLVLNTIP-GQKTKTVRTEEAVLATLA 250
++ +VFG GV E L E+ + FD+++ T +++ R EE VL+ LA
Sbjct: 308 PKILLVFGGV-AGVDAAVESEELAEWRRAEDAFDVLIRTTSLSNGSRSERVEENVLSVLA 366
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101566373
Number of Sequences: 2977
Number of extensions: 4526764
Number of successful extensions: 7766
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7738
Number of HSP's gapped (non-prelim): 12
length of query: 258
length of database: 189,106,746
effective HSP length: 52
effective length of query: 206
effective length of database: 157,985,422
effective search space: 32544996932
effective search space used: 32544996932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)