BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2120 (rpl3P) DE:LSU ribosomal protein L3P (rpl3P)
(361 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V1T5|RL3_PYRAB 50S RIBOSOMAL PROTEIN L3P >gi|7440659|pir||A... 735 0.0
sp|O59418|RL3_PYRHO 50S RIBOSOMAL PROTEIN L3P >gi|7440656|pir||H... 706 0.0
gi|11499509 LSU ribosomal protein L3P (rpl3P) [Archaeoglobus ful... 340 1e-92
sp|P54014|RL3_METJA 50S RIBOSOMAL PROTEIN L3P >gi|2144769|pir||A... 316 4e-85
sp|Q9UWG2|RL3_METVA 50S RIBOSOMAL PROTEIN L3P 307 1e-82
sp|O26110|RL3_METTH 50S RIBOSOMAL PROTEIN L3P >gi|7440658|pir||C... 306 3e-82
sp|Q9YFM2|RL3_AERPE 50S RIBOSOMAL PROTEIN L3P >gi|7440660|pir||A... 279 5e-74
sp|P20279|RL3_HALMA 50S RIBOSOMAL PROTEIN L3P (HMAL3) (HL1) >gi|... 263 2e-69
gb|AAG19936.1| (AE005077) 50S ribosomal protein L13P; Rpl3p [Hal... 259 3e-68
pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Sub... 258 8e-68
emb|CAC12395.1| (AL445067) 50S ribosomal protein L3 related prot... 245 5e-64
sp|Q06844|RL3_HALHA 50S RIBOSOMAL PROTEIN L3P >gi|629397|pir||S4... 238 6e-62
gb|AAK41018.1| LSU ribosomal protein L3AB (rpl3AB) [Sulfolobus s... 234 1e-60
sp|Q9UXA8|RL3_SULSO 50S RIBOSOMAL PROTEIN L3P >gi|6015757|emb|CA... 234 1e-60
emb|CAB65281.1| (AJ248327) L3 Ribosomal protein [Medicago sativa... 229 5e-59
gi|7305441 ribosomal protein L3 [Mus musculus] >gi|132956|sp|P27... 228 9e-59
sp|P34113|RL3_DICDI 60S RIBOSOMAL PROTEIN L3 >gi|1363618|pir||JC... 227 1e-58
sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 >gi|481228|pir||S38... 227 1e-58
gi|4506649 ribosomal protein L3 [Homo sapiens] >gi|730565|sp|P39... 227 1e-58
emb|CAA10068.1| (AJ012585) ribosomal protein L3 [Tetrahymena the... 227 2e-58
sp|P21531|RL3_RAT 60S RIBOSOMAL PROTEIN L3 (L4) >gi|71095|pir||R... 226 3e-58
pir||I84501 ribosomal protein L3 - human (fragment) >gi|337580|g... 226 3e-58
sp|O16797|RL3_DROME 60S RIBOSOMAL PROTEIN L3 >gi|2384754|gb|AAC2... 226 3e-58
sp|P39872|RL3_BOVIN 60S RIBOSOMAL PROTEIN L3 >gi|1083080|pir||S5... 226 4e-58
gb|AAF15600.1|AF198447_1 (AF198447) 60S ribosomal protein L3 [As... 225 7e-58
emb|CAB76199.1| (AJ238851) ribosomal protein L3 [Bos taurus] 225 7e-58
sp|P36584|RL3B_SCHPO 60S RIBOSOMAL PROTEIN L3-B >gi|101073|pir||... 222 4e-57
sp|P17094|RL3A_ARATH 60S RIBOSOMAL PROTEIN L3 222 4e-57
sp|P40372|RL3A_SCHPO 60S RIBOSOMAL PROTEIN L3-A >gi|7490031|pir|... 222 5e-57
gb|AAC36018.1| (AC005687) L3 cytoplasmic ribosomal protein [Arab... 221 8e-57
sp|P50880|RL3_CAEEL 60S RIBOSOMAL PROTEIN L3 >gi|7498976|pir||T1... 221 1e-56
pir||JQ0771 ribosomal protein L3.e (clone ARP1), cytosolic - Ara... 221 1e-56
gi|6324637 Ribosomal protein L3 (rp1) (YL1); Rpl3p [Saccharomyce... 220 1e-56
sp|P22738|RL3B_ARATH 60S RIBOSOMAL PROTEIN L3 >gi|81658|pir||JQ0... 219 6e-56
gb|AAD25547.1|AC005850_4 (AC005850) 60s ribosomal protein L3 [Ar... 219 6e-56
gb|AAF62506.1| (AF225211) ribosomal protein L3 [Trypanoplasma bo... 219 6e-56
gb|AAF54609.1| (AE003690) RpL3 gene product [alt 1] [Drosophila ... 217 2e-55
gi|4826988 ribosomal protein L3-like [Homo sapiens] >gi|11431101... 216 3e-55
gb|AAA88732.1| (J01351) ribosomal protein L3 [Saccharomyces cere... 215 5e-55
sp|P49149|RL3_TOXCA 60S RIBOSOMAL PROTEIN L3 >gi|2119105|pir||JC... 212 4e-54
gi|11418144 ribosomal protein L3 [Homo sapiens] 190 2e-47
emb|CAB76201.1| (AJ238852) ribosomal protein L3 [Homo sapiens] 184 1e-45
gb|AAA91344.1| (L22453) TARBP-b gene product [Homo sapiens] 172 5e-42
dbj|BAA83471.1| (AB008848) Csf-3 [Cucumis sativus] 163 2e-39
gb|AAF77028.1|AF247847_1 (AF247847) ribosomal protein L3 [Caenor... 124 1e-27
gb|AAC36524.1| (U89417) ribosomal protein L3 [Mus musculus] 112 6e-24
sp|Q29293|RL3_PIG 60S RIBOSOMAL PROTEIN L3 110 2e-23
dbj|BAA89259.1| (AB024901) ribosomal protein L3 [Bombyx mori] 75 1e-12
>sp|Q9V1T5|RL3_PYRAB 50S RIBOSOMAL PROTEIN L3P >gi|7440659|pir||A75148 lsu ribosomal
protein l3p (rpl3p) PAB2120 - Pyrococcus abyssi (strain
Orsay) >gi|5457774|emb|CAB49264.1| (AJ248284) LSU
ribosomal protein L3P (rpl3P) [Pyrococcus abyssi]
Length = 361
Score = 735 bits (1878), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL 60
MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL
Sbjct: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL 60
Query: 61 TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFT 120
TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFT
Sbjct: 61 TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFT 120
Query: 121 FYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVM 180
FYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVM
Sbjct: 121 FYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVM 180
Query: 181 EYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRA 240
EYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRA
Sbjct: 181 EYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRA 240
Query: 241 HKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEIE 300
HKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEIE
Sbjct: 241 HKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEIE 300
Query: 301 ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360
ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK
Sbjct: 301 ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360
Query: 361 Q 361
Q
Sbjct: 361 Q 361
>sp|O59418|RL3_PYRHO 50S RIBOSOMAL PROTEIN L3P >gi|7440656|pir||H71187 probable
ribosomal protein L3 - Pyrococcus horikoshii
>gi|3258212|dbj|BAA30895.1| (AP000007) 362aa long
hypothetical 50S ribosomal protein L3 [Pyrococcus
horikoshii]
Length = 362
Score = 706 bits (1802), Expect = 0.0
Identities = 346/362 (95%), Positives = 354/362 (97%), Gaps = 1/362 (0%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL 60
MGK+HRPR+GSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL
Sbjct: 1 MGKIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL 60
Query: 61 TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYV-SKKAKGRKF 119
TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETA EVIVPDFELDNY SKK KGRKF
Sbjct: 61 TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFELDNYTPSKKGKGRKF 120
Query: 120 TFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEV 179
TFYQ L RRIATLPK+YT+++FEQKLG LEDMIKEGEIVEVRALV+TQPWVIKLKKKPEV
Sbjct: 121 TFYQFLGRRIATLPKDYTQEEFEQKLGALEDMIKEGEIVEVRALVSTQPWVIKLKKKPEV 180
Query: 180 MEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLR 239
MEYAIGGTSVEEKFNYIKEKLGKE+RVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLR
Sbjct: 181 MEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLR 240
Query: 240 AHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEI 299
AHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEI
Sbjct: 241 AHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEI 300
Query: 300 EITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVES 359
EITPKGGFPHYGIVR DFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVES
Sbjct: 301 EITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVES 360
Query: 360 KQ 361
KQ
Sbjct: 361 KQ 362
>gi|11499509 LSU ribosomal protein L3P (rpl3P) [Archaeoglobus fulgidus]
>gi|3914742|sp|O28354|RL3_ARCFU 50S RIBOSOMAL PROTEIN
L3P >gi|7440657|pir||D69490 LSU ribosomal protein L3P
(rpl3P) homolog - Archaeoglobus fulgidus
>gi|2648621|gb|AAB89331.1| (AE000971) LSU ribosomal
protein L3P (rpl3P) [Archaeoglobus fulgidus]
Length = 331
Score = 340 bits (864), Expect = 1e-92
Identities = 191/364 (52%), Positives = 240/364 (65%), Gaps = 41/364 (11%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL-T 61
K HRPRRGSLAFSPRKRAKSIVPRIR+WP+ VRM GFAGYKAGMTH++MIDD T
Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDRVRMQGFAGYKAGMTHVVMIDDRKNSPT 61
Query: 62 NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFTF 121
G+E+ +PVT+IETPP++V +R Y++ G++ A EV LD+++ ++
Sbjct: 62 YGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVW--SNNLDDFLDRR-------- 111
Query: 122 YQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIK--LKKKPEV 179
LPK E + L+ ++ G EVR + TQP++I KK P+V
Sbjct: 112 --------LNLPKK------EPDVEKLKAAVENG-ASEVRVVTYTQPYLITGVPKKVPDV 156
Query: 180 MEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG-IKL 238
ME+ IGG +VEE +Y KLGKE+ V EV EG ++DVIAVTKGKG QGPVKRWG I L
Sbjct: 157 MEHRIGG-NVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITL 215
Query: 239 RA-HKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGN 297
A H S R+VG++GPW+P V WTVP AGQMGFH RTE NKRLI IGENG+
Sbjct: 216 DAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGE------ 269
Query: 298 EIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSV 357
EITPKGGF HYG++R+ ++++ GSVPG +KR+IR+R AIRPPK I YVS
Sbjct: 270 --EITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAIRPPKAH--FDGVNIVYVST 325
Query: 358 ESKQ 361
SKQ
Sbjct: 326 TSKQ 329
>sp|P54014|RL3_METJA 50S RIBOSOMAL PROTEIN L3P >gi|2144769|pir||A64322 ribosomal protein
L3.eR - Methanococcus jannaschii
>gi|1590928|gb|AAB98161.1| (U67474) LSU ribosomal
protein L3P (rplC) [Methanococcus jannaschii]
Length = 335
Score = 316 bits (800), Expect = 4e-85
Identities = 178/363 (49%), Positives = 233/363 (64%), Gaps = 39/363 (10%)
Query: 4 VHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGLTN- 62
++RPRRGSLAFSPRKRAK VPRIRSWP+E VR+ F YKAGM+H + +D P N
Sbjct: 5 INRPRRGSLAFSPRKRAKRPVPRIRSWPEEDTVRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 63 GKEIFMPVTIIETPPLRVFGIRAYRQGYLG-LETATEVIVPDFELDNYVSKKAKGRKFTF 121
G+E+F P+TI+E PP+ V IR Y + L T TEV + LD + +K K
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADN--LDKELERKIK------ 116
Query: 122 YQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-KKKPEVM 180
LPK + E L L+D I++ VR LV T P + L KKKPE++
Sbjct: 117 ----------LPKKEDRKTVED-LEALKDKIED-----VRVLVHTNPKLTCLPKKKPEIL 160
Query: 181 EYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRA 240
E IGG +EE+ NY KE LGK+L + +V +EGEL+D I VTKGKG QG VKRWG+K++
Sbjct: 161 EIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQF 220
Query: 241 HKDSKG--RRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNE 298
K ++ R VGSIGPW P VMW+VPM GQMG+H RTE NKR++ IG NG
Sbjct: 221 GKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGD------- 273
Query: 299 IEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVE 358
EITPKGGF HYG++R++++++ GSV G KR+I +R AIRP ++P ++ P+ITY+S
Sbjct: 274 -EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRP--QEPLIKVPEITYISTT 330
Query: 359 SKQ 361
SKQ
Sbjct: 331 SKQ 333
>sp|Q9UWG2|RL3_METVA 50S RIBOSOMAL PROTEIN L3P
Length = 334
Score = 307 bits (779), Expect = 1e-82
Identities = 167/363 (46%), Positives = 232/363 (63%), Gaps = 38/363 (10%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEP-GLT 61
K +RPRRGSLAFSPRKRAK +VP+IRSWP + +V + F YKAG TH L++++ P
Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPADKKVGLQAFPVYKAGTTHALLVENNPKSPN 63
Query: 62 NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFTF 121
NG+E+F PVT++ETP + V GIRAY + GL+ TEV + K GRK T
Sbjct: 64 NGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQD-------KELGRKLTV 116
Query: 122 YQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-KKKPEVM 180
TK + + + +L+ ++++ V++R +V T P + KKKPEV+
Sbjct: 117 ---------------TKKEEIKTVESLDAVLEK--TVDLRVIVHTNPKTTGIPKKKPEVV 159
Query: 181 EYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLR- 239
E +GG+SV EK Y K+ LGK L + +V + GE +D +AVTKGKG QGPVKRWG+K++
Sbjct: 160 EIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQF 219
Query: 240 -AHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNE 298
H+ R+ GSIGPW P RVMWTVP+AGQMGFH RTE NKR++ +G G
Sbjct: 220 GKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEG-------- 271
Query: 299 IEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVE 358
EITPKGGF +YG V++ ++++ G+V G KR++ +R A+RP + K P++TY+S E
Sbjct: 272 AEITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDK--FGLPEVTYISKE 329
Query: 359 SKQ 361
SKQ
Sbjct: 330 SKQ 332
>sp|O26110|RL3_METTH 50S RIBOSOMAL PROTEIN L3P >gi|7440658|pir||C69124 ribosomal protein
L3 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621048|gb|AAB84521.1| (AE000795) ribosomal
protein L3 (E.coli L3) [Methanobacterium
thermoautotrophicum]
Length = 337
Score = 306 bits (775), Expect = 3e-82
Identities = 166/368 (45%), Positives = 231/368 (62%), Gaps = 40/368 (10%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRMLGFAGYKAGMTHILMIDDEPGL 60
M + H+PR+GS+AFSPRKRA PR++SWP+ E +L AGYKAGMTH++M+D++
Sbjct: 1 MARHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPGLLALAGYKAGMTHVMMVDNQKNS 60
Query: 61 -TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF 119
T G E+ PVTI+E PPL V +R Y + GL+T EV+ + + D
Sbjct: 61 PTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDD------------ 108
Query: 120 TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKL-KKKP 177
L+R++ +Y ++ +K+ N+E + +VR +V T P + + KKKP
Sbjct: 109 -----LRRKLTPPADDYDQEAAIEKIRSNME------YVADVRVIVHTNPRLASVPKKKP 157
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
EV E +GG + EEKF Y E LGK++R E+ EG +D IAVTKGKG QGPVKRWGI+
Sbjct: 158 EVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIR 217
Query: 238 L---RAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVI 294
+ +A + SKGR +GS+GPW P+R MWTVP AGQMG+H RTE NK+++ IG
Sbjct: 218 IQYGKAARSSKGRH-IGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG------- 269
Query: 295 DGNEIE-ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQIT 353
D +E + + P GGF YG+VR+D++MI GSVPG KR++ +R AIR K+ + PQI
Sbjct: 270 DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAIRAAGKQE--EAPQIN 327
Query: 354 YVSVESKQ 361
Y+S SKQ
Sbjct: 328 YISTASKQ 335
>sp|Q9YFM2|RL3_AERPE 50S RIBOSOMAL PROTEIN L3P >gi|7440660|pir||A72780 probable
ribosomal protein L3 APE0227 - Aeropyrum pernix (strain
K1) >gi|5103618|dbj|BAA79139.1| (AP000058) 344aa long
hypothetical 50S ribosomal protein L3 [Aeropyrum pernix]
Length = 344
Score = 279 bits (705), Expect = 5e-74
Identities = 168/374 (44%), Positives = 229/374 (60%), Gaps = 51/374 (13%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVRM---LGFAGYKAGMTHILMIDDEPG 59
K PRRGSL FSPRKRA +VPR++ WP E ++ L F GY+AGMTH+ M+DD PG
Sbjct: 5 KKRAPRRGSLGFSPRKRASRLVPRVKRWP-EVDIGKPVPLAFLGYRAGMTHVFMVDDRPG 63
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAY----RQGYLGLETATEVIVPDFELDNYVSKKA 114
T+GKEIF+PVTI+ETPP+ V +R Y +G L A P+ EL
Sbjct: 64 RPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELEL-------- 115
Query: 115 KGRKFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIK-- 172
+RRI+TL D ++ L +LE+ + + E +VR + A+QP +
Sbjct: 116 -----------QRRISTLGSF----DTDKMLKSLEERLDKAE--DVRLIAASQPKLAGGL 158
Query: 173 LKKKPEVMEYAIGGTS-VEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 231
KKKP+++E +GG S V + F+Y K+ LG + V +V +EG+L+DVIAVTKGKG QG +
Sbjct: 159 SKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVI 218
Query: 232 KRWGIK--LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGEN 289
KRWG+K R HK KG R++G+ H W P AGQ GFH RTE NKR+
Sbjct: 219 KRWGVKELPRWHKHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRI------ 270
Query: 290 GKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPK--KKPPV 347
L+ID + ++TP GGF YG+VRS F+M++GS+PG KR I +R AIRPP+ K V
Sbjct: 271 --LMIDDDGYKVTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGV 328
Query: 348 QRPQITYVSVESKQ 361
++P+ITY+S+ SKQ
Sbjct: 329 RKPEITYISLASKQ 342
>sp|P20279|RL3_HALMA 50S RIBOSOMAL PROTEIN L3P (HMAL3) (HL1) >gi|71097|pir||R5HS3L
ribosomal protein L3 [similarity] - Haloarcula
marismortui >gi|148801|gb|AAA86859.1| (J05222) ribosomal
protein L3 [Haloarcula marismortui]
Length = 338
Score = 263 bits (665), Expect = 2e-69
Identities = 152/371 (40%), Positives = 216/371 (57%), Gaps = 44/371 (11%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKET-EVRMLGFAGYKAGMTHILMIDDEPG 59
M + RPR+GSL F PRKR+ S PR SWP + + + GFAGYKAGMTH+++++DEP
Sbjct: 1 MPQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPN 60
Query: 60 LTN-GKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDF--ELDNYVSKKAKG 116
G E +PVT+IETPP+R +RAY G TEV +F ELD
Sbjct: 61 SPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELD--------- 111
Query: 117 RKFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL--K 174
R +P+++ D E+++ D + G++ ++R + T P + K
Sbjct: 112 -----------RTLDVPEDHDPDAAEEQI---RDAHEAGDLGDLRLITHTVPDAVPSVPK 157
Query: 175 KKPEVMEYAIGGTSVEEKFNYIKEKL--GKELRVGEVLKEGELLDVIAVTKGKGTQGPVK 232
KKP+VME +GG SV ++ ++ + + G E + ++ + GE DV VTKGKGTQGPVK
Sbjct: 158 KKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVK 217
Query: 233 RWGIKLRAHKDSKG--RRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG 290
RWG++ R K ++ RR++G++GPW+P+RV TVP GQ G+H RTELNKRLI IGE
Sbjct: 218 RWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD 277
Query: 291 KLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
+ +D GGF +YG V + ++ GSVPG KR++ RPA+RP P P
Sbjct: 278 EPTVD---------GGFVNYGEVDGPYTLVKGSVPGPDKRLVPFRPAVRP--NDQPRLDP 326
Query: 351 QITYVSVESKQ 361
++ YVS ES Q
Sbjct: 327 EVRYVSNESNQ 337
>gb|AAG19936.1| (AE005077) 50S ribosomal protein L13P; Rpl3p [Halobacterium sp.
NRC-1]
Length = 335
Score = 259 bits (656), Expect = 3e-68
Identities = 149/369 (40%), Positives = 213/369 (57%), Gaps = 43/369 (11%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKET-EVRMLGFAGYKAGMTHILMIDDEPG 59
M + +RPR+GS+ FSPRKRA+S VPR SWP + EV + GFAGYKAGMTH++++DD+
Sbjct: 1 MPQPNRPRKGSMGFSPRKRAESEVPRFNSWPADDGEVGLQGFAGYKAGMTHVVLVDDKAN 60
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
T G E +PVT++ETPP+R +R Y G + TEV D
Sbjct: 61 APTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDT-------------- 106
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIK--LKKK 176
++ L R ++ + D+ L + + EI ++R + T P KK
Sbjct: 107 ---HESLDRTLSVPDEGGDTDE-------LIEALDTEEIADIRVITHTVPGDTAGVPKKN 156
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKL--GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRW 234
P+VME +GG ++ ++ + + + G G+V + GE D +TKGKGTQGPVKRW
Sbjct: 157 PDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRW 216
Query: 235 GIKLRAHKDSKG--RRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKL 292
G++ R K ++ RR++G++GPW+P+RV TVP GQ G+H RTELNKRLI I
Sbjct: 217 GVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIN----- 271
Query: 293 VIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQI 352
DG+ E TP GGFP+YG V + ++ GSVPG +R++R RPA+RP + P P++
Sbjct: 272 --DGD--EPTPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRP--NESPRLDPEV 325
Query: 353 TYVSVESKQ 361
YVS S Q
Sbjct: 326 RYVSTASNQ 334
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 338
Score = 258 bits (652), Expect = 8e-68
Identities = 151/367 (41%), Positives = 214/367 (58%), Gaps = 45/367 (12%)
Query: 6 RPRRGSLAFSPRKRAKSIVPRIRSWPKET-EVRMLGFAGYKAGMTHILMIDDEPGLTN-G 63
RPR+GSL F PRKR+ S PR SWP + + + GFAGYKAGMTH+++++DEP G
Sbjct: 5 RPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREG 64
Query: 64 KEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDF--ELDNYVSKKAKGRKFTF 121
E +PVT+IETPP+R +RAY G TEV +F ELD
Sbjct: 65 MEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELD-------------- 110
Query: 122 YQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL--KKKPEV 179
R +P+++ D E+++ D + G++ ++R + T P + KKKP+V
Sbjct: 111 ------RTLDVPEDHDPDAAEEQI---RDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDV 161
Query: 180 MEYAIGGTSVEEKFNYIKEKL--GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
ME +GG SV ++ ++ + + G E + ++ + GE DV VTKGKGTQGPVKRWG++
Sbjct: 162 METRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQ 221
Query: 238 LRAHKDSKG--RRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVID 295
R K ++ RR++G++GPW+P+RV TVP GQ G+H RTELNKRLI IGE + +D
Sbjct: 222 KRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVD 281
Query: 296 GNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIR-VRPAIRPPKKKPPVQRPQITY 354
GGF +YG V + ++ GSVPG KR++ RPA+RP P P++ Y
Sbjct: 282 ---------GGFVNYGEVDGPYTLVKGSVPGPDKRLVPFFRPAVRP--NDQPRLDPEVRY 330
Query: 355 VSVESKQ 361
VS ES Q
Sbjct: 331 VSNESNQ 337
>emb|CAC12395.1| (AL445067) 50S ribosomal protein L3 related protein [Thermoplasma
acidophilum]
Length = 331
Score = 245 bits (620), Expect = 5e-64
Identities = 150/367 (40%), Positives = 214/367 (57%), Gaps = 44/367 (11%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPK-ETEVRMLGFAGYKAGMTHILMID-DEP 58
M H RRGS+A+ PR RAKS+ P+IRSWP+ + EV++ GFAG+K GMTH+ MID +
Sbjct: 1 MATPHHSRRGSMAYYPRVRAKSVDPKIRSWPEIKGEVKVQGFAGFKVGMTHVEMIDYRKK 60
Query: 59 GLTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLG-LETATEVIVPDFELDNYVSKKAKGR 117
+T G+ I +PVT++E PPL V G R Y + G L E D + + +
Sbjct: 61 SVTAGQPILVPVTVVEVPPLDVVGYRLYDEDAEGNLVVVFEAWAKDLDKEIF-------- 112
Query: 118 KFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIK--LKK 175
R+I + K +D E + ED VR +VAT+ + K
Sbjct: 113 ---------RKIPEIKKVAERDPPE----SYED---------VRIIVATRNKDVPGIPSK 150
Query: 176 KPEVMEYAI-GGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRW 234
KPE+ E I GG SV+E+ Y K LGK++ + K G+ +DV+++TKGKG G VKR+
Sbjct: 151 KPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSITKGKGFTGHVKRF 210
Query: 235 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVI 294
G+KL K+ K RR +G++GPWHP V TVP AGQMGF RT N R+I G K +
Sbjct: 211 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYG--NKEEV 268
Query: 295 DGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITY 354
D I +GGF HYG V++D++++ GS+PGA KR+I++R R +K P ++ ++ Y
Sbjct: 269 D----SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPAR--QKVPDIEEVKLEY 322
Query: 355 VSVESKQ 361
+S+ESKQ
Sbjct: 323 ISLESKQ 329
>sp|Q06844|RL3_HALHA 50S RIBOSOMAL PROTEIN L3P >gi|629397|pir||S43420 ribosomal protein
L3.eR - Halobacterium halobium >gi|11383705|pir||T43816
ribosomal protein L3.eR [similarity] - Halobacterium
salinarum >gi|2425176|dbj|BAA22270.1| (AB006961)
ribosomal protein L3 [Halobacterium halobium]
Length = 330
Score = 238 bits (602), Expect = 6e-62
Identities = 144/368 (39%), Positives = 208/368 (56%), Gaps = 46/368 (12%)
Query: 1 MGKVHRPRRGSLAFSPRKRAKSIVPRIRSWPKET-EVRMLGFAGYKAGMTHILMIDDEPG 59
M + +RPR+GS+ FSPRKRA+S VPR SWP + EV + FAGYKAGMTH++++DD+
Sbjct: 1 MPQPNRPRKGSMGFSPRKRAESEVPRFNSWPADDGEVGLQAFAGYKAGMTHVVLVDDKAN 60
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
T G E +PVT+ ETPP+R +R Y G + TEV D
Sbjct: 61 APTEGMETTVPVTV-ETPPMRA--VRLYEDTPYGKKPLTEVWADDT-------------- 103
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPW--VIKLKKK 176
++ L R ++ + T + L + + EI ++R + T P KK
Sbjct: 104 ---HESLDRTLSVPTRRVTDE--------LIEALDTEEIADIRVITHTVPGDHAGVPKKN 152
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKL--GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRW 234
P+VME +GG ++ ++ + + + G G+V + GE D +TKGKGTQGPVKRW
Sbjct: 153 PDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFADAAGITKGKGTQGPVKRW 212
Query: 235 GIKLRAHKDSKG-RRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLV 293
G++ R K ++ R++G++GPW+P+RV TVP GQ G+H RTELNKRLI I
Sbjct: 213 GVQKRKGKHARHVARRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIN------ 266
Query: 294 IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQIT 353
DG+ E +P GGFP+YG V + ++ GSVPG +R++R R +RP + P P++
Sbjct: 267 -DGD--EPSPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRLGVRP--NESPRLDPEVR 321
Query: 354 YVSVESKQ 361
YVS S Q
Sbjct: 322 YVSTASNQ 329
>gb|AAK41018.1| LSU ribosomal protein L3AB (rpl3AB) [Sulfolobus solfataricus]
Length = 351
Score = 234 bits (591), Expect = 1e-60
Identities = 149/375 (39%), Positives = 210/375 (55%), Gaps = 45/375 (12%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPK--ETEVRMLGFAGYKAGMTHILMIDDEPGL 60
K+ PRRGS PRKR+ ++P R+WP+ ++LGF GYK GMTH+ MIDD P
Sbjct: 5 KLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDDWPNS 64
Query: 61 -TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF 119
TNGKEI+MPVT++E PP+ +RAY G N +++
Sbjct: 65 PTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEP-------------NVITEYWSSSSL 111
Query: 120 TFYQLLKRRIATLPKNYTKDD-----FEQKLGNLEDMIKEG--EIVEVRALVATQPWVIK 172
F + RRI ++ ++ KDD F+++ D+IK IV R LV+TQP I
Sbjct: 112 QFLDIT-RRIHSI-SSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIP 169
Query: 173 L--KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGP 230
KK P+++E IGG + + +Y LGKE+ + +V KEG+L+DV+ VTKGKG G
Sbjct: 170 SLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGV 229
Query: 231 VKRWGI--KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 288
+KR+ + R HK KG RK+G+ GP P GQ+GFH RTE NKR+I IG+
Sbjct: 230 IKRYSVVELPRWHKHRKGSRKIGTRGP--SLGTPSYTPQPGQLGFHRRTEYNKRIIKIGD 287
Query: 289 NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPK--KKPP 346
K EI P GGF YGIVR+ ++++ GS+ G+ KR I +R +RP + P
Sbjct: 288 EPK--------EINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVRPSYVFENP- 338
Query: 347 VQRPQITYVSVESKQ 361
P+ITYV++ S+Q
Sbjct: 339 ---PKITYVNLLSQQ 350
>sp|Q9UXA8|RL3_SULSO 50S RIBOSOMAL PROTEIN L3P >gi|6015757|emb|CAB57584.1| (Y18930)
ribosomal protein L3 (HMAL3) [Sulfolobus solfataricus]
Length = 351
Score = 234 bits (591), Expect = 1e-60
Identities = 149/375 (39%), Positives = 210/375 (55%), Gaps = 45/375 (12%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPK--ETEVRMLGFAGYKAGMTHILMIDDEPGL 60
K+ PRRGS PRKR+ ++P R+WP+ ++LGF GYK GMTH+ MIDD P
Sbjct: 5 KLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNPKLLGFVGYKVGMTHVFMIDDWPNS 64
Query: 61 -TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF 119
TNGKEI+MPVT++E PP+ +RAY G N +++
Sbjct: 65 PTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEP-------------NVITEYWSSSSL 111
Query: 120 TFYQLLKRRIATLPKNYTKDD-----FEQKLGNLEDMIKEG--EIVEVRALVATQPWVIK 172
F + RRI ++ ++ KDD F+++ D+IK IV R LV+TQP I
Sbjct: 112 QFLDIT-RRIHSI-SSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIP 169
Query: 173 L--KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGP 230
KK P+++E IGG + + +Y LGKE+ + +V KEG+L+DV+ VTKGKG G
Sbjct: 170 SLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGV 229
Query: 231 VKRWGI--KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 288
+KR+ + R HK KG RK+G+ GP P GQ+GFH RTE NKR+I IG+
Sbjct: 230 IKRYSVVELPRWHKHRKGSRKIGTRGP--SLGTPSYTPQPGQLGFHRRTEYNKRIIKIGD 287
Query: 289 NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPK--KKPP 346
K EI P GGF YGIVR+ ++++ GS+ G+ KR I +R +RP + P
Sbjct: 288 EPK--------EINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVRPSYVFENP- 338
Query: 347 VQRPQITYVSVESKQ 361
P+ITYV++ S+Q
Sbjct: 339 ---PKITYVNLLSQQ 350
>emb|CAB65281.1| (AJ248327) L3 Ribosomal protein [Medicago sativa subsp. x varia]
Length = 388
Score = 229 bits (577), Expect = 5e-59
Identities = 134/371 (36%), Positives = 207/371 (55%), Gaps = 20/371 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVR---MLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKRA +++++PK+ + + F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KE PVTIIETPP+ V G+ Y + GL T V ++S++ K R
Sbjct: 65 SKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWT------QHLSEEIKRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIK--LKK 175
+ + + K+ + K Y D+ ++ + + +K+ V +R L TQ +K +K
Sbjct: 119 YKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATV-IRVLAHTQIRKMKGLKQK 177
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K +ME + G ++ +K ++ K++ + V ++ E++D+I VTKGKG +G V RWG
Sbjct: 178 KAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 237
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG----- 290
+ K +G RKV IG WHPARV +TV AGQ G+HHRTELNK++ +G+ G
Sbjct: 238 VTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKVGEETHD 297
Query: 291 -KLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 349
+ D E +ITP GGFPHYGIV+ DF+MI G G KR+I +R ++ + ++
Sbjct: 298 AQTEFDRTEKDITPMGGFPHYGIVKEDFLMIKGGCVGPKKRVITLRQSLLKQTSRLALED 357
Query: 350 PQITYVSVESK 360
++ ++ K
Sbjct: 358 IKLKFIDTSFK 368
>gi|7305441 ribosomal protein L3 [Mus musculus] >gi|132956|sp|P27659|RL3_MOUSE
60S RIBOSOMAL PROTEIN L3 (J1 PROTEIN)
>gi|52741|emb|CAA68370.1| (Y00225) J1 protein [Mus
musculus] >gi|226725|prf||1604248A J1 protein [Moloney
murine leukemia virus]
Length = 403
Score = 228 bits (575), Expect = 9e-59
Identities = 137/375 (36%), Positives = 206/375 (54%), Gaps = 23/375 (6%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR+ +++S+PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ V GI Y + GL T V ++S + K R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA------EHISDECKRRF 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-KKP 177
+ + K++ T +DD +K + + +R + TQ ++ L+ KK
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKA 178
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
+ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW K
Sbjct: 179 HLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTK 238
Query: 238 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGKL 292
K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ IG+ +GKL
Sbjct: 239 KLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 298
Query: 293 V-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKP 345
+ D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++ K+
Sbjct: 299 IKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRR 358
Query: 346 PVQRPQITYVSVESK 360
+++ + ++ SK
Sbjct: 359 ALEKIDLKFIDTTSK 373
>sp|P34113|RL3_DICDI 60S RIBOSOMAL PROTEIN L3 >gi|1363618|pir||JC4254 ribosomal protein
L3.e, cytosolic - slime mold (Dictyostelium discoideum)
>gi|167816|gb|AAA99508.1| (L08391) ribosomal protein
[Dictyostelium discoideum]
Length = 398
Score = 227 bits (573), Expect = 1e-58
Identities = 138/373 (36%), Positives = 199/373 (52%), Gaps = 20/373 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGYKAGMTHILMIDDEPG 59
K PR G+L F PRKRA +++S+PK+ +V + F GYKAGMTH++ ++PG
Sbjct: 5 KFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KEI VTIIE PP+ + G+ Y + GL+T V DN+ + K
Sbjct: 65 SKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLS-DNFRRRLYKN-- 121
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-KKKP 177
+ K+ K Y ++ ++ + IK+ V VR + TQ +KL +KK
Sbjct: 122 -WYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSV-VRVIAHTQVHKLKLTQKKA 179
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
V+E + G S+ EK N+ K + V V E EL+DVI VTKGKG G +KRWG++
Sbjct: 180 HVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVR 239
Query: 238 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE--------- 288
K KG RKV IG WHP+RV TVP AGQ+G+HHR E NK++ IG+
Sbjct: 240 KLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQI 299
Query: 289 -NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPV 347
GK D E I P GGF HYG+V+ +F+M+ G V G KR + +R +I + +
Sbjct: 300 STGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAAL 359
Query: 348 QRPQITYVSVESK 360
++ + ++ SK
Sbjct: 360 EKITLKFIDTSSK 372
>sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 >gi|481228|pir||S38359 ribosomal protein
L3.e, cytosolic - rice >gi|303853|dbj|BAA02155.1|
(D12630) ribosomal protein L3 [Oryza sativa]
Length = 389
Score = 227 bits (573), Expect = 1e-58
Identities = 135/370 (36%), Positives = 206/370 (55%), Gaps = 18/370 (4%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVR---MLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR+ +++S+PK+ + + F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KE VTIIETPPL + G+ AY + GL + V ++S++ + R
Sbjct: 65 SKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWA------QHLSEEVRRRF 118
Query: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKLG-NLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
+ + K++ T Y D ++++ LE M K IV V A + +KK
Sbjct: 119 YKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKK 178
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
+ME I G ++ +K +Y + KE+ V V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 179 AHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
Query: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK----- 291
K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ IG++G+
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAA 298
Query: 292 -LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
D E +ITP GGFPHYG+V+ D++MI G G KR++ +R ++ + ++
Sbjct: 299 CTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 358
Query: 351 QITYVSVESK 360
++ ++ SK
Sbjct: 359 KLKFIDTSSK 368
>gi|4506649 ribosomal protein L3 [Homo sapiens] >gi|730565|sp|P39023|RL3_HUMAN
60S RIBOSOMAL PROTEIN L3 (HIV-1 TAR RNA BINDING PROTEIN
B) (TARBP-B) >gi|423069|pir||S34195 ribosomal protein
L3, cytosolic - human >gi|313659|emb|CAA51839.1|
(X73460) ribosomal protein L3 [Homo sapiens]
>gi|3850177|emb|CAA18450.1| (AL022326) dJ333H23.1 (60S
Ribosomal Protein L3) [Homo sapiens]
Length = 403
Score = 227 bits (573), Expect = 1e-58
Identities = 138/377 (36%), Positives = 212/377 (55%), Gaps = 27/377 (7%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR+ +++S+PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ V GI Y + GL T V ++S + K R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA------EHISDECKRRF 118
Query: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKLG-NLEDMIKEGEIVEVRALVATQPWVIKLK-K 175
+ + K++ T K + +D +++L + M K +++ R + TQ ++ L+ K
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQK 176
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K +ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW
Sbjct: 177 KAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWH 236
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NG 290
K K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+ +G
Sbjct: 237 TKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDG 296
Query: 291 KLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKK 343
KL+ D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++ K
Sbjct: 297 KLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTK 356
Query: 344 KPPVQRPQITYVSVESK 360
+ +++ + ++ SK
Sbjct: 357 RRALEKIDLKFIDTTSK 373
>emb|CAA10068.1| (AJ012585) ribosomal protein L3 [Tetrahymena thermophila]
Length = 391
Score = 227 bits (572), Expect = 2e-58
Identities = 140/370 (37%), Positives = 198/370 (52%), Gaps = 24/370 (6%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVR---MLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PR+R + R RS+PK+ + + F G+KAGMTHIL D G
Sbjct: 5 KFEAPRHGSLGFRPRRRTRHHRGRCRSFPKDDPSKKPHLTAFTGFKAGMTHILREVDRSG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VT+IE PP+ + G+ Y GL T V +DN K+
Sbjct: 65 SRHNKKEVVEAVTVIECPPMTIVGVVGYIDTPRGLRALTTVWAKT--IDNNTKKR----- 117
Query: 119 FTFYQLLKRRIATLPKNYT--KDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-K 175
FY K + K +T + +F+QK +L E VR + T + L+ K
Sbjct: 118 --FY---KNWANSNKKAFTHHEKNFDQKAQDLLLKRIEKYCSVVRVIAHTNMSKLNLRQK 172
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K ++E + G V EK + K L KE++V + E E+LDV+ VTKGKG G +KR+G
Sbjct: 173 KNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFG 232
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NG 290
+K K +G RKVG IG WHP+R+ +TVP AGQ+G+HHRTE NK++ +G+ N
Sbjct: 233 VKHLQKKTHRGYRKVGCIGAWHPSRIRFTVPRAGQLGYHHRTETNKKVYRVGKGDDASNA 292
Query: 291 KLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
D + ITP GGFPHYG+V++DF+MI G G KR++ +R +I P +
Sbjct: 293 STAGDVTDKAITPLGGFPHYGVVKNDFIMIKGCCVGPKKRVLTLRKSIIPQTHGAAKEII 352
Query: 351 QITYVSVESK 360
+ ++ SK
Sbjct: 353 NLKFIDTSSK 362
>sp|P21531|RL3_RAT 60S RIBOSOMAL PROTEIN L3 (L4) >gi|71095|pir||R5RT3L ribosomal
protein L3, cytosolic [validated] - rat
>gi|57698|emb|CAA44095.1| (X62166) ribosomal protein L3
[Rattus rattus]
Length = 403
Score = 226 bits (571), Expect = 3e-58
Identities = 136/375 (36%), Positives = 206/375 (54%), Gaps = 23/375 (6%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR+ +++S+PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ V GI Y + GL T V ++S + K R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA------EHISDECKRRF 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-KKP 177
+ + K++ T +DD +K + + +R + TQ ++ L+ KK
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKA 178
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
+ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW K
Sbjct: 179 HLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTK 238
Query: 238 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGKL 292
K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+ +GKL
Sbjct: 239 KLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKL 298
Query: 293 V-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKP 345
+ D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++ K+
Sbjct: 299 IKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRR 358
Query: 346 PVQRPQITYVSVESK 360
+++ + ++ SK
Sbjct: 359 ALEKIDLKFIDTTSK 373
>pir||I84501 ribosomal protein L3 - human (fragment) >gi|337580|gb|AAA60291.1|
(M90054) ribosomal protein L3 [Homo sapiens]
Length = 398
Score = 226 bits (571), Expect = 3e-58
Identities = 137/373 (36%), Positives = 211/373 (55%), Gaps = 27/373 (7%)
Query: 7 PRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGL-TN 62
PR GSL F PRKR+ +++S+PK+ V + F GYKAGMTHI+ D PG N
Sbjct: 4 PRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVN 63
Query: 63 GKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKFTFY 122
KE+ VTI+ETPP+ V GI Y + GL T V ++S + K R + +
Sbjct: 64 KKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA------EHISDECKRRFYKNW 117
Query: 123 QLLKRRIAT-LPKNYTKDDFEQKLG-NLEDMIKEGEIVEVRALVATQPWVIKLK-KKPEV 179
K++ T K + +D +++L + M K +++ R + TQ ++ L+ KK +
Sbjct: 118 HKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQKKAHL 175
Query: 180 MEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLR 239
ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW K
Sbjct: 176 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 235
Query: 240 AHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGKLV- 293
K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+ +GKL+
Sbjct: 236 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 295
Query: 294 ------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPV 347
D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++ K+ +
Sbjct: 296 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 355
Query: 348 QRPQITYVSVESK 360
++ + ++ SK
Sbjct: 356 EKIDLKFIDTTSK 368
>sp|O16797|RL3_DROME 60S RIBOSOMAL PROTEIN L3 >gi|2384754|gb|AAC26144.1| (AF016835)
ribosomal protein L3 [Drosophila melanogaster]
Length = 416
Score = 226 bits (571), Expect = 3e-58
Identities = 136/377 (36%), Positives = 210/377 (55%), Gaps = 27/377 (7%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GS+AF P+KR+ +++++PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VT++ETPP+ V G Y + GL V ++S++ + R
Sbjct: 65 SKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWA------QHLSEECRRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDDFEQKLGN-LEDMIKEGEIVEVRALVATQPWVIKLK-K 175
+ +Y+ K+ K +T D ++ + N M++ +++ R + +Q +IK + K
Sbjct: 119 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVI--RVIAHSQIRLIKQRQK 176
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K VME + G S+E+K + +E L K ++V V + E++D + VTKGKG +G RW
Sbjct: 177 KAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWH 236
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG-----ENG 290
K K KG RKV IG WHP+RV TV AGQ G+HHRTE+NK++ IG ++G
Sbjct: 237 TKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDG 296
Query: 291 KLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKK 343
K++ D + ITP GGFPHYG V +DF+MI G G+ KRII +R ++ K
Sbjct: 297 KVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTK 356
Query: 344 KPPVQRPQITYVSVESK 360
+ +++ ++ ++ SK
Sbjct: 357 RSALEQIKLKFIDTSSK 373
>sp|P39872|RL3_BOVIN 60S RIBOSOMAL PROTEIN L3 >gi|1083080|pir||S50221 ribosomal protein
L3, cytosolic - bovine >gi|450499|emb|CAA82654.1|
(Z29555) ribosomal protein L3 [Bos taurus]
>gi|1092507|prf||2024221A ribosomal protein L3 [Bos
taurus]
Length = 403
Score = 226 bits (569), Expect = 4e-58
Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 27/377 (7%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR+ +++S+PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ + GI Y + GL T + ++S + K R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFA------EHISDECKRRF 118
Query: 119 FTFYQLLKRRIAT--LPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-K 175
+ + K++ T K D +Q + M K +++ R + TQ ++ L+ K
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQK 176
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K +ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW
Sbjct: 177 KAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWH 236
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NG 290
K K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+ +G
Sbjct: 237 TKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDG 296
Query: 291 KLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKK 343
KL+ D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++ K
Sbjct: 297 KLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTK 356
Query: 344 KPPVQRPQITYVSVESK 360
+ +++ + ++ SK
Sbjct: 357 RRALEKIDLKFIDTTSK 373
>gb|AAF15600.1|AF198447_1 (AF198447) 60S ribosomal protein L3 [Aspergillus nidulans]
Length = 392
Score = 225 bits (567), Expect = 7e-58
Identities = 132/368 (35%), Positives = 198/368 (52%), Gaps = 17/368 (4%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSLA+ PRKRA R++S+PK+ V + GYKAGMT ++ D PG
Sbjct: 5 KYEAPRHGSLAYLPRKRAARHRGRVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KEI T+IETPPL G+ Y + GL + V ++S + K R
Sbjct: 65 AKMHKKEIVEAATVIETPPLIAVGVVGYIETPRGLRSLATVWA------EHLSDEVKRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKKKP 177
+ +Y+ K+ K +++++ +LE + K +V V A + +K +KK
Sbjct: 119 YKNWYKSKKKAFTKYAKKHSEENGASITRDLERIKKYCTVVRVLAHTQIRKTPLK-QKKA 177
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
+ME + G SV EK ++ + K + + + ++ E++DVIAVTKG G QG RWG K
Sbjct: 178 HLMEIQVNGGSVAEKVDFARNLFEKPIEIDTIFEKDEMIDVIAVTKGHGFQGVTSRWGTK 237
Query: 238 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGKL 292
K KG RKV IG WHP+ V WTV AGQMG+HHRT N ++ IG+ N
Sbjct: 238 KLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEANAST 297
Query: 293 VIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQI 352
D ++ +ITP GGF YG V++DF+++ GSVPG KR++ +R + P + ++ +
Sbjct: 298 DFDVSKKQITPLGGFVRYGEVKNDFILLKGSVPGVKKRVMTLRKTLYPQTSRRATEKVDL 357
Query: 353 TYVSVESK 360
++ SK
Sbjct: 358 KWIDTSSK 365
>emb|CAB76199.1| (AJ238851) ribosomal protein L3 [Bos taurus]
Length = 403
Score = 225 bits (567), Expect = 7e-58
Identities = 136/377 (36%), Positives = 207/377 (54%), Gaps = 27/377 (7%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR+ +++S+PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ + GI Y + GL T + ++S + K R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFA------EHISDECKRRF 118
Query: 119 FTFYQLLKRRIAT--LPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-K 175
+ + K++ T K D +Q + M K +++ R + TQ ++ L+ K
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVI--RVIAHTQMRLLPLRQK 176
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K +ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW
Sbjct: 177 KAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWH 236
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NG 290
K K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+ +G
Sbjct: 237 TKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDG 296
Query: 291 KLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKK 343
KL+ D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++ K
Sbjct: 297 KLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTK 356
Query: 344 KPPVQRPQITYVSVESK 360
+ ++ + ++ SK
Sbjct: 357 RRALEEIDLKFIDTTSK 373
>sp|P36584|RL3B_SCHPO 60S RIBOSOMAL PROTEIN L3-B >gi|101073|pir||S25592 ribosomal protein
L3.e, cytosolic - fission yeast (Schizosaccharomyces
pombe) >gi|5059|emb|CAA40901.1| (X57734) ribosomal
protein L3 [Schizosaccharomyces pombe]
Length = 388
Score = 222 bits (561), Expect = 4e-57
Identities = 134/369 (36%), Positives = 197/369 (53%), Gaps = 20/369 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K +PR GSL F PRKRA +++++PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
Query: 60 LTNGK-EIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
K EI VTIIETPP+ V G+ Y + GL + T V ++S++ K R
Sbjct: 65 SKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWA------EHLSEEVKRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-KKK 176
+ +++ K+ K Y + Q + + IK+ V VR L TQ L +KK
Sbjct: 119 YKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSV-VRVLAHTQIRKTPLAQKK 175
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
+ME + G SV +K + +E K + + ++ E++DVI VT+GKG +G RWG
Sbjct: 176 AHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGT 235
Query: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG-----ENGK 291
K K +G RKV IG WHPA V WTV AG G+ HRT+LN ++ IG +N
Sbjct: 236 KRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNAS 295
Query: 292 LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQ 351
D E ITP GGF YG+V +DF+M+ G+ PG +KR++ +R ++ + ++
Sbjct: 296 TDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVS 355
Query: 352 ITYVSVESK 360
+ ++ SK
Sbjct: 356 LKWIDTASK 364
>sp|P17094|RL3A_ARATH 60S RIBOSOMAL PROTEIN L3
Length = 389
Score = 222 bits (561), Expect = 4e-57
Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 18/369 (4%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVR---MLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKRA +++++PK+ + + F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KE VTIIETP + V G+ AY + GL + V ++S++ + R
Sbjct: 65 SKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWA------QHLSEEVRRRF 118
Query: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
+ + K++ T K Y +D ++ + LE M K ++ V A + +KK
Sbjct: 119 YKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKK 178
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
+ME I G ++ +K ++ K++ + V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 179 AHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
Query: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG------ 290
K +G RKV IG WHPARV +TV AGQ G+HHRTELNK++ +G+ G
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTA 298
Query: 291 KLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
D E ++TP GGFPHYGIV+ D+ MI G GA KR++ +R ++ + ++
Sbjct: 299 MTEYDRTEKDVTPMGGFPHYGIVKDDYFMIKGCCVGAKKRVVTLRQSLLTQTSRLALEEI 358
Query: 351 QITYVSVES 359
++ ++ S
Sbjct: 359 KLKFIDTAS 367
>sp|P40372|RL3A_SCHPO 60S RIBOSOMAL PROTEIN L3-A >gi|7490031|pir||T37818 60s ribosomal
protein L3 - fission yeast (Schizosaccharomyces pombe)
>gi|508856|gb|AAA19655.1| (U00798) ribosomal protein L3
[Schizosaccharomyces pombe] >gi|2370475|emb|CAB11503.1|
(Z98849) 60s ribosomal protein L3 [Schizosaccharomyces
pombe]
Length = 388
Score = 222 bits (560), Expect = 5e-57
Identities = 133/369 (36%), Positives = 197/369 (53%), Gaps = 20/369 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K +PR GSL F PRKRA +++++PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
Query: 60 LTNGK-EIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
K EI VT+IETPP+ V G+ Y + GL + T V ++S++ K R
Sbjct: 65 SKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWA------EHLSEEVKRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-KKK 176
+ +++ K+ K Y + Q + + IK+ V VR L TQ L +KK
Sbjct: 119 YKNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSV-VRVLAHTQIRKTPLAQKK 175
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
+ME + G SV +K + +E K + + ++ E++DVI VT+GKG +G RWG
Sbjct: 176 AHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGT 235
Query: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG-----ENGK 291
K K +G RKV IG WHPA V WTV AG G+ HRT+LN ++ IG +N
Sbjct: 236 KRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNAS 295
Query: 292 LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQ 351
D E ITP GGF YG+V +DF+M+ G+ PG +KR++ +R ++ + ++
Sbjct: 296 TDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVS 355
Query: 352 ITYVSVESK 360
+ ++ SK
Sbjct: 356 LKWIDTASK 364
>gb|AAC36018.1| (AC005687) L3 cytoplasmic ribosomal protein [Arabidopsis thaliana]
Length = 389
Score = 221 bits (558), Expect = 8e-57
Identities = 129/369 (34%), Positives = 202/369 (53%), Gaps = 18/369 (4%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVR---MLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKRA +++++PK+ + + F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KE VTIIETP + V G+ AY + GL + V ++S++ + R
Sbjct: 65 SKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWA------QHLSEEVRRRF 118
Query: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
+ + K++ T K Y +D ++ + LE M K ++ V A + +KK
Sbjct: 119 YKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKK 178
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
+ME I G ++ +K ++ K++ + V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 179 AHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
Query: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG------ 290
K +G RKV IG WHPARV +TV AGQ G+HHRTELNK++ +G+ G
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTA 298
Query: 291 KLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
D E ++TP GGFPHYGIV+ D++MI G G KR++ +R ++ + ++
Sbjct: 299 MTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEI 358
Query: 351 QITYVSVES 359
++ ++ S
Sbjct: 359 KLKFIDTAS 367
>sp|P50880|RL3_CAEEL 60S RIBOSOMAL PROTEIN L3 >gi|7498976|pir||T19771 hypothetical
protein F13B10.2 - Caenorhabditis elegans
>gi|1181129|emb|CAA93269.1| (Z69337) ribosomal protein
L3 [Caenorhabditis elegans] >gi|1181131|emb|CAA93268.1|
(Z69336) ribosomal protein L3 [Caenorhabditis elegans]
>gi|3874745|emb|CAA91277.1| (Z66495) contains similarity
to Pfam domain: PF00297 (Ribosomal protein L3),
Score=576.5, E-value=5.5e-170, N=1~cDNA EST EMBL:M75754
comes from this gene; cDNA EST EMBL:M88798 comes from
this gene~cDNA EST EMBL:M88842 comes from this gene;
cDNA EST EMB> >gi|3875827|emb|CAA90183.1| (Z49936)
contains similarity to Pfam domain: PF00297 (Ribosomal
protein L3), Score=576.5, E-value=5.5e-170, N=1~cDNA EST
EMBL:M75754 comes from this gene; cDNA EST EMBL:M88798
comes from this gene~cDNA EST EMBL:M88842 comes from
this gene; cDNA EST EMB>
Length = 401
Score = 221 bits (557), Expect = 1e-56
Identities = 125/372 (33%), Positives = 205/372 (54%), Gaps = 20/372 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR G + F+P+KR+++ RI+++PK+ + + + F GYKAGMTHI+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ + G+ Y G T + ++S++A+ R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWA------EHLSEEARRRF 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-KKP 177
++ + K++ T +D+ +KL + + +R + TQ +++ + KK
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKA 178
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
++E + G ++E+K ++ +E L K+++V V + E++D I VT+G G +G RW K
Sbjct: 179 HLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTK 238
Query: 238 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE--------- 288
K KG RKV IG WHP+RV +TV AGQ GFHHRT +N ++ IG+
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGKN 298
Query: 289 NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQ 348
NG D + ITP GGFP YGIV D++M+ G+V G KR+I +R ++ K+ +
Sbjct: 299 NGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHE 358
Query: 349 RPQITYVSVESK 360
+ + ++ SK
Sbjct: 359 KINLKWIDTSSK 370
>pir||JQ0771 ribosomal protein L3.e (clone ARP1), cytosolic - Arabidopsis
thaliana >gi|166858|gb|AAA66160.1| (M32654) ribosomal
protein [Arabidopsis thaliana]
Length = 389
Score = 221 bits (557), Expect = 1e-56
Identities = 129/369 (34%), Positives = 202/369 (53%), Gaps = 18/369 (4%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEVR---MLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKRA +++++PK+ + + F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ KE VTIIETP + V G+ AY + GL + V ++S++ + R
Sbjct: 65 SKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWA------QHLSEEVRRRF 118
Query: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKK 176
+ + K++ T K Y +D ++ + LE + K ++ V A + +KK
Sbjct: 119 YKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKVKKYATVIRVLAHTQIRKMKGLKQKK 178
Query: 177 PEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
+ME I G ++ +K ++ K++ + V ++ E++D+I VTKGKG +G V RWG+
Sbjct: 179 AHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 238
Query: 237 KLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENG------ 290
K +G RKV IG WHPARV +TV AGQ G+HHRTELNK++ +G+ G
Sbjct: 239 TRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTA 298
Query: 291 KLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRP 350
D E ++TP GGFPHYGIV+ D+ MI G GA KR++ +R ++ + ++
Sbjct: 299 MTEYDRTEKDVTPMGGFPHYGIVKDDYFMIKGCCVGAKKRVVTLRQSLLTQTSRLALEEI 358
Query: 351 QITYVSVES 359
++ ++ S
Sbjct: 359 KLKFIDTAS 367
>gi|6324637 Ribosomal protein L3 (rp1) (YL1); Rpl3p [Saccharomyces cerevisiae]
>gi|2507307|sp|P14126|RL3_YEAST 60S RIBOSOMAL PROTEIN L3
(YL1) (RP1) (TRICHODERMIN RESISTANCE PROTEIN)
>gi|2144768|pir||R5BY4E ribosomal protein L3.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|1420207|emb|CAA99256.1| (Z74971) ORF YOR063w
[Saccharomyces cerevisiae] >gi|2104875|emb|CAA94548.1|
(Z70678) YOR29-14 [Saccharomyces cerevisiae]
Length = 387
Score = 220 bits (556), Expect = 1e-56
Identities = 131/371 (35%), Positives = 198/371 (53%), Gaps = 24/371 (6%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR G L F PRKRA SI R++++PK+ V + F GYKAGMT I+ D PG
Sbjct: 5 KYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ +E+ VT+++TPP+ V G+ Y + GL + T V ++S + K R
Sbjct: 65 SKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWA------EHLSDEVKRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDD--FEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-K 174
+ +Y+ K+ Y +D E++L ++ VR LV TQ L +
Sbjct: 119 YKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASV-----VRVLVHTQIRKTPLAQ 173
Query: 175 KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRW 234
KK + E + G S+ EK ++ +E K + V V ++ E++D IAVTKG G +G RW
Sbjct: 174 KKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRW 233
Query: 235 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----N 289
G K K +G RKV IG WHPA VMW+V AGQ G+H RT +N ++ +G+ N
Sbjct: 234 GTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEAN 293
Query: 290 GKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 349
G D + ITP GGF HYG +++DF+M+ G +PG KRI+ +R ++ + ++
Sbjct: 294 GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEE 353
Query: 350 PQITYVSVESK 360
+ ++ SK
Sbjct: 354 VSLKWIDTASK 364
>sp|P22738|RL3B_ARATH 60S RIBOSOMAL PROTEIN L3 >gi|81658|pir||JQ0772 ribosomal protein
L3.e (clone ARP2), cytosolic - Arabidopsis thaliana
>gi|806279|gb|AAA66161.1| (M32655) ribosomal protein
[Arabidopsis thaliana]
Length = 390
Score = 219 bits (551), Expect = 6e-56
Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 20/370 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEV---RMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELD---NYVSKKAK 115
+ KE VTIIETPP+ V G+ Y + GL + V + + AK
Sbjct: 65 SKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAK 124
Query: 116 GRKFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKK 175
+K F + K K+ T++ + LE M K ++ V A + +K
Sbjct: 125 SKKKAFTRYSK-------KHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGVKQK 177
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K + E I G + +K +Y K++ V + ++ E++D+I VTKGKG +G V RWG
Sbjct: 178 KAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWG 237
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK---- 291
+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+
Sbjct: 238 VTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHS 297
Query: 292 --LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 349
D E +ITP GGFPHYGIV+ D++MI G G KR++ +R + + ++
Sbjct: 298 AMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEE 357
Query: 350 PQITYVSVES 359
++ ++ S
Sbjct: 358 IKLKFIDAAS 367
>gb|AAD25547.1|AC005850_4 (AC005850) 60s ribosomal protein L3 [Arabidopsis thaliana]
Length = 390
Score = 219 bits (551), Expect = 6e-56
Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 20/370 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETEV---RMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG
Sbjct: 5 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELD---NYVSKKAK 115
+ KE VTIIETPP+ V G+ Y + GL + V + + AK
Sbjct: 65 SKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAK 124
Query: 116 GRKFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLKK 175
+K F + K K+ T++ + LE M K ++ V A + +K
Sbjct: 125 SKKKAFTRYSK-------KHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQK 177
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K + E I G + +K +Y K++ V + ++ E++D+I VTKGKG +G V RWG
Sbjct: 178 KAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWG 237
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK---- 291
+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ +G+ G+
Sbjct: 238 VTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHS 297
Query: 292 --LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 349
D E +ITP GGFPHYGIV+ D++MI G G KR++ +R + + ++
Sbjct: 298 AMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEE 357
Query: 350 PQITYVSVES 359
++ ++ S
Sbjct: 358 IKLKFIDAAS 367
>gb|AAF62506.1| (AF225211) ribosomal protein L3 [Trypanoplasma borreli]
Length = 416
Score = 219 bits (551), Expect = 6e-56
Identities = 130/386 (33%), Positives = 197/386 (50%), Gaps = 47/386 (12%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKET---EVRMLGFAGYKAGMTHILMIDDEPG 59
K PR G L F PRKR++ I R RS+PK+ + + F +KAGMTHI+ D PG
Sbjct: 5 KFEHPRHGHLGFLPRKRSRQIRGRCRSFPKDDPSQKPHLTSFMVFKAGMTHIVRDLDRPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ PVTI+E PP+ + G+ YR+ +G + V ++VS++ + R
Sbjct: 65 SKMNKKEVVEPVTILEAPPMAIVGVTGYRETAVGYKCIGTVWA------HHVSQEFRRRY 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK---- 174
+ ++ + T K++ + K G++ E R L A + ++
Sbjct: 119 YKNWKQSAQLAFTKRKSFIRS-------------KNGKVAEQRVLKALKDKATVIRVIAH 165
Query: 175 -------------KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAV 221
KK + E + G ++E K K+ L KE+R+ + ++ E DV AV
Sbjct: 166 TQLRKLRNHRVGNKKAHIQEIQVNGGTIEAKLKMAKDLLEKEVRIDSIFQQSETCDVCAV 225
Query: 222 TKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNK 281
TKG G +G V RWG+ K +G RKV IG WHPARVM+TV AGQ G+HHRT LNK
Sbjct: 226 TKGHGFEGVVHRWGVACLPRKSHRGLRKVACIGAWHPARVMYTVARAGQNGYHHRTHLNK 285
Query: 282 RLIAIGENGKL-------VIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRV 334
++ IG + + D E ITP GGF YG VR+DF+M+ GSV G +R++ +
Sbjct: 286 KIYRIGRSSSVDPKQATTTYDLTEKVITPMGGFVGYGTVRNDFIMLKGSVAGPRRRVVTL 345
Query: 335 RPAIRPPKKKPPVQRPQITYVSVESK 360
R + P + ++ + ++ +K
Sbjct: 346 RRPMAPQTSRALTEKIVLKFIDTSAK 371
>gb|AAF54609.1| (AE003690) RpL3 gene product [alt 1] [Drosophila melanogaster]
>gi|7299420|gb|AAF54610.1| (AE003690) RpL3 gene product
[alt 4] [Drosophila melanogaster]
Length = 403
Score = 217 bits (547), Expect = 2e-55
Identities = 131/368 (35%), Positives = 205/368 (55%), Gaps = 27/368 (7%)
Query: 12 LAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-NGKEIF 67
+AF P+KR+ +++++PK+ V + F GYKAGMTHI+ D PG N KE+
Sbjct: 1 MAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVV 60
Query: 68 MPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLK 126
VT++ETPP+ V G Y + GL V ++S++ + R + +Y+ K
Sbjct: 61 EAVTVLETPPMIVVGAVGYIETPFGLRALVNVWA------QHLSEECRRRFYKNWYKSKK 114
Query: 127 RRIATLPKNYTKDDFEQKLGN-LEDMIKEGEIVEVRALVATQPWVIKLK-KKPEVMEYAI 184
+ K +T D ++ + N M++ +++ R + +Q +IK + KK VME +
Sbjct: 115 KAFTKASKKWTDDLGKKSIENDFRKMLRYCKVI--RVIAHSQIRLIKQRQKKAHVMEIQL 172
Query: 185 GGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDS 244
G S+E+K + +E L K ++V V + E++D + VTKGKG +G RW K K
Sbjct: 173 NGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTH 232
Query: 245 KGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG-----ENGKLV------ 293
KG RKV IG WHP+RV TV AGQ G+HHRTE+NK++ IG ++GK++
Sbjct: 233 KGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNAST 292
Query: 294 -IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQI 352
D + ITP GGFPHYG V +DF+MI G G+ KRII +R ++ K+ +++ ++
Sbjct: 293 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 352
Query: 353 TYVSVESK 360
++ SK
Sbjct: 353 KFIDTSSK 360
>gi|4826988 ribosomal protein L3-like [Homo sapiens]
>gi|11431101|ref|XP_007920.1| ribosomal protein L3-like
[Homo sapiens] >gi|2500230|sp|Q92901|RL3L_HUMAN 60S
RIBOSOMAL PROTEIN L3-LIKE >gi|1638884|gb|AAC50777.1|
(U65581) ribosomal protein L3-like [Homo sapiens]
Length = 407
Score = 216 bits (545), Expect = 3e-55
Identities = 138/378 (36%), Positives = 195/378 (51%), Gaps = 29/378 (7%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR G L F P KR+ ++++WP++ V + F GYKAGMTH L PG
Sbjct: 5 KFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPG 64
Query: 60 LTNGK-EIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELD---NYVSKKAK 115
L K E VTI+ETPPL V G+ Y GL + + + + K
Sbjct: 65 LKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHK 124
Query: 116 GRKFTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK- 174
+K F + KR T K + DF M K +++ R +V TQ ++ +
Sbjct: 125 SKKKAFTKACKRWRDTDGKKQLQKDFAA-------MKKYCKVI--RVIVHTQMKLLPFRQ 175
Query: 175 KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRW 234
KK +ME + G +V EK + + +L K++ V V + E++DVIAVTKG+G +G RW
Sbjct: 176 KKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRW 235
Query: 235 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG-----EN 289
K K KG RKV IG WHPARV ++ AGQ G+HHRTELNK++ IG E+
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMED 295
Query: 290 GKLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPK 342
GKLV D ITP GGFPHYG V +DF+M+ G + G KR+I +R ++
Sbjct: 296 GKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHH 355
Query: 343 KKPPVQRPQITYVSVESK 360
+ V+ ++ ++ SK
Sbjct: 356 SRQAVENIELKFIDTTSK 373
>gb|AAA88732.1| (J01351) ribosomal protein L3 [Saccharomyces cerevisiae]
Length = 387
Score = 215 bits (543), Expect = 5e-55
Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 24/371 (6%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR G L F PRKRA SI R++++PK+ V + F GYKAGMT I+ D PG
Sbjct: 5 KYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPG 64
Query: 60 LT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
+ +E+ VT+++TPP+ V G+ Y + GL + T V ++S + K R
Sbjct: 65 SKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWA------EHLSDEVKRRF 118
Query: 119 F-TFYQLLKRRIATLPKNYTKDD--FEQKLGNLEDMIKEGEIVEVRALVATQPWVIKL-K 174
+ +Y+ K+ Y +D E++L ++ VR LV TQ L +
Sbjct: 119 YKNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASV-----VRVLVHTQIRKTPLAQ 173
Query: 175 KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRW 234
KK + E + G S+ EK ++ +E K + V V ++ E++D IAVTKG G +G RW
Sbjct: 174 KKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRW 233
Query: 235 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----N 289
G K K +G RKV IG HPA VMW+V AGQ G+H RT +N ++ +G+ N
Sbjct: 234 GTKKLPRKTHRGLRKVACIGACHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEAN 293
Query: 290 GKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQR 349
G D + ITP GGF HYG +++DF+M+ G +PG KRI+ +R ++ + ++
Sbjct: 294 GATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEE 353
Query: 350 PQITYVSVESK 360
+ ++ SK
Sbjct: 354 VSLKWIDTASK 364
>sp|P49149|RL3_TOXCA 60S RIBOSOMAL PROTEIN L3 >gi|2119105|pir||JC4382 ribosomal protein
L3.e, cytosolic - Toxocara canis
>gi|596082|gb|AAA92285.1| (U17358) ribosomal protein L3
[Toxocara canis]
Length = 402
Score = 212 bits (535), Expect = 4e-54
Identities = 128/372 (34%), Positives = 196/372 (52%), Gaps = 20/372 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GS+ F+P+KR+K +++++PK+ + + F +KAGMTHI+ D+PG
Sbjct: 5 KFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI E PP+ + GI Y G V ++S+ +GR
Sbjct: 65 SKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWA------EHLSEDCRGRF 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-KKP 177
+ + K++ +D+ +K + + ++R + TQ V+K + KK
Sbjct: 119 YKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKA 178
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
+ME I G +V EK ++ +E L K++ V V + E++D I VTKGKG +G RW K
Sbjct: 179 HIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTK 238
Query: 238 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIG---------E 288
K KG RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ +G +
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKK 298
Query: 289 NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQ 348
NG D E + P GGFPHYG+V DF+MI G G+ KR I +R ++ K+ +
Sbjct: 299 NGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHE 358
Query: 349 RPQITYVSVESK 360
+ + ++ SK
Sbjct: 359 KINLKWIDTSSK 370
>gi|11418144 ribosomal protein L3 [Homo sapiens]
Length = 351
Score = 190 bits (479), Expect = 2e-47
Identities = 117/329 (35%), Positives = 184/329 (55%), Gaps = 24/329 (7%)
Query: 48 MTHILMIDDEPGL-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFEL 106
MTHI+ D PG N KE+ VTI+ETPP+ V GI Y + GL T V
Sbjct: 1 MTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA----- 55
Query: 107 DNYVSKKAKGRKFTFYQLLKRRIAT-LPKNYTKDDFEQKLG-NLEDMIKEGEIVEVRALV 164
++S + K R + + K++ T K + +D +++L + M K +++ R +
Sbjct: 56 -EHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVI--RVIA 112
Query: 165 ATQPWVIKLK-KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTK 223
TQ ++ L+ KK +ME + G +V EK ++ +E+L +++ V +V + E++DVI VTK
Sbjct: 113 HTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTK 172
Query: 224 GKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRL 283
GKG +G RW K K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++
Sbjct: 173 GKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKI 232
Query: 284 IAIGE-----NGKLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRI 331
IG+ +GKL+ D ++ I P GGF HYG V +DF+M+ G V G KR+
Sbjct: 233 YKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRV 292
Query: 332 IRVRPAIRPPKKKPPVQRPQITYVSVESK 360
+ +R ++ K+ +++ + ++ SK
Sbjct: 293 LTLRKSLLVQTKRRALEKIDLKFIDTTSK 321
>emb|CAB76201.1| (AJ238852) ribosomal protein L3 [Homo sapiens]
Length = 343
Score = 184 bits (463), Expect = 1e-45
Identities = 112/321 (34%), Positives = 179/321 (54%), Gaps = 24/321 (7%)
Query: 56 DEPGL-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKA 114
D PG N KE+ VTI+ETPP+ V GI Y + GL T V ++S +
Sbjct: 6 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA------EHISDEC 59
Query: 115 KGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIK 172
K R + +++ K+ K + +D +++L + M K ++ +R + TQ ++
Sbjct: 60 KRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQV--IRVIAHTQMRLLP 117
Query: 173 LK-KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 231
L+ KK +ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G
Sbjct: 118 LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVT 177
Query: 232 KRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE--- 288
RW K K +G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+
Sbjct: 178 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 237
Query: 289 --NGKLV-------IDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIR 339
+GKL+ D ++ I P GGF HYG V +DF+M+ G V G KR++ +R ++
Sbjct: 238 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 297
Query: 340 PPKKKPPVQRPQITYVSVESK 360
K+ +++ + ++ SK
Sbjct: 298 VQTKRRALEKIDLKFIDTTSK 318
>gb|AAA91344.1| (L22453) TARBP-b gene product [Homo sapiens]
Length = 277
Score = 172 bits (432), Expect = 5e-42
Identities = 106/281 (37%), Positives = 156/281 (54%), Gaps = 15/281 (5%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GSL F PRKR +++S+PK+ V + F GYKAGMTHI+ D PG
Sbjct: 5 KFSAPRHGSLGFLPRKRTSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ VTI+ETPP+ V GI Y + GL T V ++S + K R
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFA------EHISDECKRRF 118
Query: 119 FTFYQLLKRRIAT-LPKNYTKDDFEQKLG-NLEDMIKEGEIVEVRALVATQPWVIKLK-K 175
+ + K++ T K + +D +++L + M K +++ R + TQ ++ L+ K
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVI--RVIAHTQMRLLPLRQK 176
Query: 176 KPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWG 235
K +ME + G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW
Sbjct: 177 KAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWH 236
Query: 236 IKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHR 276
K K +G RKV IG WHP RV ++V AGQ G+HHR
Sbjct: 237 TKKLPRKTHRGLRKVACIGAWHPVRVAFSVARAGQKGYHHR 277
>dbj|BAA83471.1| (AB008848) Csf-3 [Cucumis sativus]
Length = 219
Score = 163 bits (409), Expect = 2e-39
Identities = 80/193 (41%), Positives = 118/193 (60%), Gaps = 6/193 (3%)
Query: 174 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 233
+KK +ME + G S+ +K +Y K++ V V ++ E++D+I VTKGKG +G V R
Sbjct: 6 QKKAHLMEIQVNGGSIAQKXDYAYGFFEKQVPVEAVFQKDEMIDLIGVTKGKGYEGVVTR 65
Query: 234 WGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-- 291
WG+ K +G RKV IG WHPARV +TV AGQ G+HHRTE+NK++ IG+ G+
Sbjct: 66 WGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKIGKTGQES 125
Query: 292 ----LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPV 347
D E +ITP GGFPHYGIV+SD++MI G G KR+I +R ++ + +
Sbjct: 126 HTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRVITLRQSLLKQTSRVAL 185
Query: 348 QRPQITYVSVESK 360
+ ++ ++ SK
Sbjct: 186 EEIKLKFIDTSSK 198
>gb|AAF77028.1|AF247847_1 (AF247847) ribosomal protein L3 [Caenorhabditis briggsae]
Length = 246
Score = 124 bits (309), Expect = 1e-27
Identities = 76/248 (30%), Positives = 132/248 (52%), Gaps = 11/248 (4%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR G + F+P+KR+++ RI+++PK+ + + F GYKAGMTHI+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 60 L-TNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KE+ V+IIETPP+ + G+ Y G T + ++S++A+ R
Sbjct: 65 SKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWA------EHLSEEARRRF 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKLGNLEDMIKEGEIVEVRALVATQPWVIKLK-KKP 177
++ + K++ T +D+ +KL + + +R + TQ +++ + KK
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKA 178
Query: 178 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 237
++E I G ++E+K ++ +E L K+++V V + E++D I VTKG G +G RW K
Sbjct: 179 HLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTK 238
Query: 238 LRAHKDSK 245
K K
Sbjct: 239 KLPRKTHK 246
>gb|AAC36524.1| (U89417) ribosomal protein L3 [Mus musculus]
Length = 117
Score = 112 bits (278), Expect = 6e-24
Identities = 54/116 (46%), Positives = 77/116 (65%), Gaps = 1/116 (0%)
Query: 184 IGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKD 243
+ G +V EK ++ +E+L +++ V +V + E++DVI VTKGKG +G RW K K
Sbjct: 3 VNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKT 62
Query: 244 SKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVIDGNEI 299
+G RKV IG WHPARV ++V AGQ G+HHRTE+NK++ IG+ G L+ DG I
Sbjct: 63 HRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQ-GYLIKDGKLI 117
>sp|Q29293|RL3_PIG 60S RIBOSOMAL PROTEIN L3
Length = 130
Score = 110 bits (273), Expect = 2e-23
Identities = 57/127 (44%), Positives = 77/127 (59%), Gaps = 12/127 (9%)
Query: 206 VGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTV 265
V +V + E++DVI VTKGKG +G RW K K +G RKV IG WHPAR ++V
Sbjct: 4 VNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSV 63
Query: 266 PMAGQMGFHHRTELNKRLIAIGE-----NGKLV-------IDGNEIEITPKGGFPHYGIV 313
AGQ G+HHRTE+NK++ IG+ +GKL+ D ++ I P G F HYG V
Sbjct: 64 ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEV 123
Query: 314 RSDFMMI 320
+DF+M+
Sbjct: 124 TNDFVML 130
>dbj|BAA89259.1| (AB024901) ribosomal protein L3 [Bombyx mori]
Length = 171
Score = 74.9 bits (181), Expect = 1e-12
Identities = 52/166 (31%), Positives = 83/166 (49%), Gaps = 12/166 (7%)
Query: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
K PR GS+ F P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 5 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 64
Query: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRK 118
N KEI VTIIETPP+ G+ Y + GL V ++S+ + R
Sbjct: 65 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA------EHMSEDCRRRF 118
Query: 119 FTFYQLLKRRIATLPKNYTKDDFEQKL--GNLEDMIKEGEIVEVRA 162
+ + K++ T +D+ +K + + MI+ +V V A
Sbjct: 119 YKNWYKCKKKAFTKASKKWQDELGRKSIEKDFKKMIRYCSVVRVIA 164
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141374037
Number of Sequences: 2977
Number of extensions: 6293715
Number of successful extensions: 15420
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15188
Number of HSP's gapped (non-prelim): 50
length of query: 361
length of database: 189,106,746
effective HSP length: 54
effective length of query: 307
effective length of database: 156,788,448
effective search space: 48134053536
effective search space used: 48134053536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)