BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2121 (rpl4P) DE:LSU ribosomal protein L4P (rpl4P)
(255 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75147 lsu ribosomal protein l4p (rpl4p) PAB2121 - Pyrococc... 522 e-147
sp|O59420|RL4_PYRHO 50S RIBOSOMAL PROTEIN L4/L1E >gi|7440591|pir... 510 e-144
sp|O26111|RL4_METTH 50S RIBOSOMAL PROTEIN L4/L1E >gi|7440592|pir... 316 1e-85
sp|P54015|RL4_METJA 50S RIBOSOMAL PROTEIN L4/L1E >gi|2119103|pir... 280 1e-74
gi|11499508 LSU ribosomal protein L4P (rpl4P) [Archaeoglobus ful... 265 3e-70
gb|AAK41017.1| LSU ribosomal protein L4AE (rpl4AE) [Sulfolobus s... 243 2e-63
sp|Q9UXA6|RL4_SULSO 50S RIBOSOMAL PROTEIN L4/L1E >gi|6015759|emb... 243 2e-63
sp|Q9YFM1|RL4_AERPE 50S RIBOSOMAL PROTEIN L4/L1E >gi|7440595|pir... 225 5e-58
gb|AAG19937.1| (AE005077) 50S ribosomal protein L4E; Rpl4e [Halo... 203 2e-51
sp|Q06845|RL4_HALHA 50S RIBOSOMAL PROTEIN L4E >gi|629398|pir||S4... 195 5e-49
emb|CAC12394.1| (AL445067) probable 50S ribosomal protein L4 [Th... 193 2e-48
gb|AAF23293.1|AC016661_18 (AC016661) putative 60S ribosomal prot... 179 3e-44
pir||T48308 60S ribosomal protein-like - Arabidopsis thaliana >g... 178 4e-44
pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Sub... 178 6e-44
sp|P12735|RL4_HALMA 50S RIBOSOMAL PROTEIN L4E (HMAL4) (HL6) >gi|... 176 3e-43
sp|P09180|RL4_DROME 60S RIBOSOMAL PROTEIN L4 (L1) >gi|71068|pir|... 170 2e-41
sp|P50878|RL4_RAT 60S RIBOSOMAL PROTEIN L4 (L1) >gi|1165139|emb|... 170 2e-41
gb|AAD32206.1|AF134732_1 (AF134732) 60S ribosomal protein L1 [Pr... 170 2e-41
pir||JC4277 ribosomal protein L4, cytosolic [validated] - rat 169 3e-41
gb|AAG22173.1| (AE003763) RpL1 gene product [Drosophila melanoga... 169 4e-41
sp|O02056|RL4_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L4 >gi|749474... 168 6e-41
sp|P49691|RL4_ARATH 60S RIBOSOMAL PROTEIN L4 (L1) 167 1e-40
dbj|BAA04887.1| (D23660) ribosomal protein [Homo sapiens] 167 1e-40
sp|P49165|RL4_URECA 60S RIBOSOMAL PROTEIN L4 (L1) >gi|7440596|pi... 167 1e-40
pir||T40797 60s ribosomal protein l2 - fission yeast (Schizosac... 166 3e-40
emb|CAB88236.1| (AL353012) 60s ribosomal protein l2 [Schizosacch... 165 4e-40
sp|P36578|RL4_HUMAN 60S RIBOSOMAL PROTEIN L4 (L1) 165 6e-40
sp|P02385|RL4B_XENLA 60S RIBOSOMAL PROTEIN L4B (L1B) >gi|71067|p... 164 7e-40
sp|P08429|RL4A_XENLA 60S RIBOSOMAL PROTEIN L4A (L1A) >gi|65082|e... 164 1e-39
pir||R5XL1A ribosomal protein XL1a - African clawed frog >gi|224... 164 1e-39
sp|Q28346|RL4_CANFA 60S RIBOSOMAL PROTEIN L4 (L1) >gi|1487948|em... 164 1e-39
gi|6319505 Ribosomal protein L4A (L2A) (rp2) (YL2); Rpl4ap [Sacc... 163 2e-39
gi|6320215 Ribosomal protein L4B (L2B) (rp2) (YL2); Rpl4bp [Sacc... 163 2e-39
gi|4506653 ribosomal protein L4 [Homo sapiens] >gi|7440597|pir||... 162 3e-39
pir||S41640 ribosomal protein L4.e - fission yeast (Schizosaccha... 162 5e-39
sp|P49669|RL4_TRYBB 60S RIBOSOMAL PROTEIN L4 (L1) >gi|1015931|em... 161 6e-39
emb|CAA29796.1| (X06552) L1a protein [Xenopus laevis] 160 1e-38
dbj|BAA78600.1| (AU066549) 60S ribosomal protein L4 [Chlamydomon... 160 1e-38
sp|P35679|RL4_SCHPO 60S RIBOSOMAL PROTEIN L4 (L2) >gi|312177|emb... 158 6e-38
gb|AAA34974.1| (J03195) ribosomal protein L2 [Saccharomyces cere... 157 1e-37
pir||S39803 ribosomal protein L4 - human >gi|307385|gb|AAA60281.... 155 5e-37
gb|AAA34975.1| (M22583) ribosomal protein L2 [Saccharomyces cere... 108 1e-22
sp||RL1_ENTHI_2 [Segment 2 of 2] 60S RIBOSOMAL PROTEIN L1 >gi|23... 90 2e-17
emb|CAA29998.1| (X06881) put. ribosomal protein L1 fragment (10 ... 81 2e-14
>pir||H75147 lsu ribosomal protein l4p (rpl4p) PAB2121 - Pyrococcus abyssi
(strain Orsay) >gi|5457773|emb|CAB49263.1| (AJ248284)
LSU ribosomal protein L4P (rpl4P) [Pyrococcus abyssi]
Length = 255
Score = 522 bits (1330), Expect = e-147
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN
Sbjct: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA
Sbjct: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR
Sbjct: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
Sbjct: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
Query: 241 VWTVSAIERLKEIYG 255
VWTVSAIERLKEIYG
Sbjct: 241 VWTVSAIERLKEIYG 255
>sp|O59420|RL4_PYRHO 50S RIBOSOMAL PROTEIN L4/L1E >gi|7440591|pir||G71187 probable
ribosomal protein L4 - Pyrococcus horikoshii
>gi|3258211|dbj|BAA30894.1| (AP000007) 255aa long
hypothetical 50S ribosomal protein L4 [Pyrococcus
horikoshii]
Length = 255
Score = 510 bits (1300), Expect = e-144
Identities = 246/255 (96%), Positives = 253/255 (98%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
MKVKVFDLNGQPVDEIELP+VF TPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN
Sbjct: 1 MKVKVFDLNGQPVDEIELPRVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
IGKGHGMARVERLKTPPRYAAFVPFARGGRR HPPKVEKIIWEGINKKERRLAIMSAIAA
Sbjct: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIAA 120
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TANYDIVK+RGHI+DNVPQLPLIVVDDLQKVSKTRETREIFKKLGIW+DIERAKEK+G+R
Sbjct: 121 TANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGVR 180
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT
Sbjct: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
Query: 241 VWTVSAIERLKEIYG 255
VWTVSAIERL+EIYG
Sbjct: 241 VWTVSAIERLREIYG 255
>sp|O26111|RL4_METTH 50S RIBOSOMAL PROTEIN L4/L1E >gi|7440592|pir||B69138 ribosomal
protein L4 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621050|gb|AAB84523.1| (AE000795)
ribosomal protein L4 (E.coli L4) [Methanobacterium
thermoautotrophicum]
Length = 254
Score = 316 bits (802), Expect = 1e-85
Identities = 157/254 (61%), Positives = 199/254 (77%), Gaps = 1/254 (0%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
MK+KV+ L G+ +DE+ELP++F FRPD+I+RAV+++ T R+QP G DPMAGKR ++
Sbjct: 1 MKIKVYSLEGEAIDEMELPEIFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQS 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
G G G+A V R+K R AAFVP A GGRR HPP+ +K E IN+KERRLAI SA+AA
Sbjct: 61 YGAGRGVAMVPRIKNGSR-AAFVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAA 119
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TA D+V+ARGH I+NVPQLPL+V D+L + +T +TRE+F+KLGI DDI RA+E IR
Sbjct: 120 TARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKIR 179
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AGKGKMRGR+Y+ +GPLIVVG ++GI GARNHPGVDVV V+NL E LAPGTHPGRLT
Sbjct: 180 AGKGKMRGRKYRTPRGPLIVVGDDKGITRGARNHPGVDVVRVENLNAELLAPGTHPGRLT 239
Query: 241 VWTVSAIERLKEIY 254
V+T SAIE+L E++
Sbjct: 240 VFTRSAIEKLDELF 253
>sp|P54015|RL4_METJA 50S RIBOSOMAL PROTEIN L4/L1E >gi|2119103|pir||B64322 ribosomal
protein L4 - Methanococcus jannaschii
>gi|1498950|gb|AAB98162.1| (U67474) LSU ribosomal
protein L4P (rplD) [Methanococcus jannaschii]
Length = 252
Score = 280 bits (709), Expect = 1e-74
Identities = 142/252 (56%), Positives = 184/252 (72%), Gaps = 3/252 (1%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
MK V++LNG+ V EI+LP VF +RPDLI+RA ++++T R+QP+G DP+AG R +N
Sbjct: 1 MKAVVYNLNGEAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKN 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
IGKGHG ARV+R+ P +AA VP A GGRR HPPKVEKI+WE +NKKER AI SAIAA
Sbjct: 61 IGKGHGRARVDRV--PQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIKSAIAA 118
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TAN ++VK RGH+ + LP+IV +++ KT++ +F+KLGI DD+ RAK IR
Sbjct: 119 TANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIR 177
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AGKGKMRGR+YKK + L+VVG + +RN PGVDV+ +LG+ HLAPG GRLT
Sbjct: 178 AGKGKMRGRKYKKPRSILVVVGDKCNAILASRNLPGVDVITAKDLGIIHLAPGGVAGRLT 237
Query: 241 VWTVSAIERLKE 252
VWT SA+E+LKE
Sbjct: 238 VWTESALEKLKE 249
>gi|11499508 LSU ribosomal protein L4P (rpl4P) [Archaeoglobus fulgidus]
>gi|3914743|sp|O28355|RL4_ARCFU 50S RIBOSOMAL PROTEIN
L4/L1E >gi|7440593|pir||C69490 LSU ribosomal protein L4P
(rpl4P) homolog - Archaeoglobus fulgidus
>gi|2648622|gb|AAB89332.1| (AE000971) LSU ribosomal
protein L4P (rpl4P) [Archaeoglobus fulgidus]
Length = 252
Score = 265 bits (671), Expect = 3e-70
Identities = 138/252 (54%), Positives = 179/252 (70%), Gaps = 3/252 (1%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
MK KV +L G+ +EIELP+VF FRPD+I+RAV+A +HR QP G +P++G EN
Sbjct: 1 MKAKVLNLKGEVTEEIELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWEN 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
G GHG ARV R K R A VP A GGRR HPPK E+ E INKKE R A+ SAIAA
Sbjct: 61 WGPGHGYARVPRWKLGRR-AVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAA 119
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TAN ++V+ R H+ + +LP +V ++L+ V +T++ E+F+ +G++ D+ERAKE+ R
Sbjct: 120 TANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYR 177
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AG+GKMRGRRY K K L+VVGK++G+V A+N PGVD VVV +L VE LAPG HPGRLT
Sbjct: 178 AGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLT 237
Query: 241 VWTVSAIERLKE 252
VWT SA+E L E
Sbjct: 238 VWTKSAVEYLGE 249
>gb|AAK41017.1| LSU ribosomal protein L4AE (rpl4AE) [Sulfolobus solfataricus]
Length = 267
Score = 243 bits (613), Expect = 2e-63
Identities = 126/252 (50%), Positives = 166/252 (65%), Gaps = 2/252 (0%)
Query: 2 KVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
K + D +G + E+ELP +F P R DLIRR IA +TH +QP+GRDP AGKR E+
Sbjct: 9 KSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESF 68
Query: 62 GKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAAT 121
G GMARV R+K AA P GGR PP V K + E N KE+RLA++SA++AT
Sbjct: 69 GINLGMARVPRVKNSGE-AALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSAT 127
Query: 122 ANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRA 181
A+ V+ARGH+ + + P++V DD+ + T E E KK+G++DD+ER KE+ IRA
Sbjct: 128 ADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRA 187
Query: 182 GKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
GKGKMRGR+YK+ GPLI+V N I+ ARN GVDVV ++ V HLAPG HPGRLT
Sbjct: 188 GKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLT 247
Query: 241 VWTVSAIERLKE 252
++T S+I+ L E
Sbjct: 248 IYTESSIKILDE 259
>sp|Q9UXA6|RL4_SULSO 50S RIBOSOMAL PROTEIN L4/L1E >gi|6015759|emb|CAB57586.1| (Y18930)
ribosomal protein L4 (HMAL4) [Sulfolobus solfataricus]
Length = 267
Score = 243 bits (613), Expect = 2e-63
Identities = 126/252 (50%), Positives = 166/252 (65%), Gaps = 2/252 (0%)
Query: 2 KVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
K + D +G + E+ELP +F P R DLIRR IA +TH +QP+GRDP AGKR E+
Sbjct: 9 KSDILDKDGNRIKEVELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESF 68
Query: 62 GKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAAT 121
G GMARV R+K AA P GGR PP V K + E N KE+RLA++SA++AT
Sbjct: 69 GINLGMARVPRVKNSGE-AALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSAT 127
Query: 122 ANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRA 181
A+ V+ARGH+ + + P++V DD+ + T E E KK+G++DD+ER KE+ IRA
Sbjct: 128 ADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRA 187
Query: 182 GKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
GKGKMRGR+YK+ GPLI+V N I+ ARN GVDVV ++ V HLAPG HPGRLT
Sbjct: 188 GKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLT 247
Query: 241 VWTVSAIERLKE 252
++T S+I+ L E
Sbjct: 248 IYTESSIKILDE 259
>sp|Q9YFM1|RL4_AERPE 50S RIBOSOMAL PROTEIN L4/L1E >gi|7440595|pir||B72780 probable
ribosomal protein L4 APE0228 - Aeropyrum pernix (strain
K1) >gi|5103619|dbj|BAA79140.1| (AP000058) 273aa long
hypothetical 50S ribosomal protein L4 [Aeropyrum pernix]
Length = 273
Score = 225 bits (567), Expect = 5e-58
Identities = 122/250 (48%), Positives = 163/250 (64%), Gaps = 4/250 (1%)
Query: 3 VKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIG 62
V V+D G D + LP++F P R DLIRRA ++ +T R+QP+GRDPMAGKR ++G
Sbjct: 17 VPVYDERGGEKDSVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLG 76
Query: 63 KGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATA 122
G G+ARV R+K R AA V ARGGR HPP+VEK++ E INKKE+RLA +SAI+AT+
Sbjct: 77 VGRGVARVPRIKGSLR-AALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATS 135
Query: 123 NYDIVKARGHIIDNVPQLPLIVVDD-LQKVSKTRETREIFKKLGIWDDIERAKEKTGIRA 181
D+V+ RGH + LP+++ L K+S RE R + + +G+++D+ RAKE A
Sbjct: 136 REDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNA 194
Query: 182 GKGKMRGRRYKKAKGPLIVV-GKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
GKGKMRGRRYK K L V+ + + PGVDVV L V HLAPG HPGRLT
Sbjct: 195 GKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPGRLT 254
Query: 241 VWTVSAIERL 250
++T A++ L
Sbjct: 255 IYTTEALKLL 264
>gb|AAG19937.1| (AE005077) 50S ribosomal protein L4E; Rpl4e [Halobacterium sp.
NRC-1]
Length = 250
Score = 203 bits (511), Expect = 2e-51
Identities = 108/252 (42%), Positives = 149/252 (58%), Gaps = 3/252 (1%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
M+V V DL+G ++LP+VF P RPDL++RAV+A+ +R Q G D AG R E+
Sbjct: 1 MQVTVRDLDGDDAGTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAES 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
G G GMA V + A VP GGR+ HPPK EK +N KER+ A+ +A+AA
Sbjct: 61 QGSGRGMAHVPKANGQ---GARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAA 117
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
T + ++V RGH D+ + PL+V DD + + KT++ + + LG+ DIERA E +R
Sbjct: 118 TTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEGRTVR 177
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AG+G +RGR+Y++ L V G ARN GVDV + E LAPG PGRLT
Sbjct: 178 AGQGTLRGRKYQEPTSILFVTASESGPSTAARNLAGVDVATGREVNAEDLAPGAEPGRLT 237
Query: 241 VWTVSAIERLKE 252
VWT SA+E + +
Sbjct: 238 VWTESAVEEVAQ 249
>sp|Q06845|RL4_HALHA 50S RIBOSOMAL PROTEIN L4E >gi|629398|pir||S43421 ribosomal protein
L4.eR [validated] - Halobacterium salinarum
>gi|2425177|dbj|BAA22271.1| (AB006961) ribosomal protein
L4 [Halobacterium halobium]
Length = 248
Score = 195 bits (490), Expect = 5e-49
Identities = 111/252 (44%), Positives = 151/252 (59%), Gaps = 5/252 (1%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
M+V V DL+G ++LP+VF T RPDL+ RAV+A+ +R Q G D AG R E+
Sbjct: 1 MQVTVRDLDGDDAGTLDLPRVFETNVRPDLVNRAVLAAQANRTQEYGADEYAGLRTTAES 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
G G GMA V + R A P + GGR+ HPPK EK +N KER+LA+ SA+ A
Sbjct: 61 QGSGRGMAHVPKQTGRVRRA---PDSFGGRKAHPPKAEKDRSLDVNDKERQLAVRSALLA 117
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TA++D ARGH D+ + PL+V DD + + KT++ + + LG+ DIERA E +R
Sbjct: 118 TADHDSELARGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHADIERADEAATVR 177
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AG+G++RGR+Y++ L V G ARN GVDV + E LAPG PGRLT
Sbjct: 178 AGQGELRGRKYQEPTSILFVTASESG-PSTARNLAGVDVASGREVNAEDLAPG-EPGRLT 235
Query: 241 VWTVSAIERLKE 252
VWT SA+E + +
Sbjct: 236 VWTESAVEEVAQ 247
>emb|CAC12394.1| (AL445067) probable 50S ribosomal protein L4 [Thermoplasma
acidophilum]
Length = 255
Score = 193 bits (485), Expect = 2e-48
Identities = 104/252 (41%), Positives = 157/252 (62%), Gaps = 2/252 (0%)
Query: 2 KVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
KV ++ ++G+ EI+LP+VF T R D+IRRA A QP G P+AG RRV
Sbjct: 4 KVPIYSVSGEMKGEIDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTT 63
Query: 62 GKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAAT 121
G G++R+ R+ R + A GG+ H P+ K ++ IN +ER++A SAIA T
Sbjct: 64 RPGLGISRMPRIAGGSRVVG-IASAVGGKSAHSPRTTKNLYVKINDRERKMAKYSAIALT 122
Query: 122 ANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRA 181
A+ + VK RGH +LP++V D ++ ++KT++ + K LG+++DIER++E IRA
Sbjct: 123 ASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRA 182
Query: 182 GKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTV 241
G+GKMRGRRYK+ K +++V +N + R+ PGVD+ ++L + LAPG GRLT+
Sbjct: 183 GRGKMRGRRYKQPKS-VLIVARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTI 241
Query: 242 WTVSAIERLKEI 253
+T AIE LKE+
Sbjct: 242 FTEGAIESLKEV 253
>gb|AAF23293.1|AC016661_18 (AC016661) putative 60S ribosomal protein L1 [Arabidopsis thaliana]
Length = 406
Score = 179 bits (449), Expect = 3e-44
Identities = 103/254 (40%), Positives = 142/254 (55%), Gaps = 5/254 (1%)
Query: 7 DLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHG 66
D++ + LP V P RPD++ + QP AG + E+ G G
Sbjct: 18 DMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRA 77
Query: 67 MARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATA 122
++R+ R+ + AAF RGGR P K+ + +N +R AI+SAIAATA
Sbjct: 78 VSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATA 137
Query: 123 NYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAG 182
+V ARGH I+NVP++PL+V D + V KT ++ K++G +DD E+AK GIR G
Sbjct: 138 VPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPG 197
Query: 183 KGKMRGRRYKKAKGPLIVVG-KNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTV 241
KGKMR RRY KGPL+V G + IV RN PGV++ V+ L + LAPG H GR +
Sbjct: 198 KGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVI 257
Query: 242 WTVSAIERLKEIYG 255
WT SA E+L+ IYG
Sbjct: 258 WTKSAFEKLESIYG 271
>pir||T48308 60S ribosomal protein-like - Arabidopsis thaliana
>gi|7413562|emb|CAB86041.1| (AL162973) 60S ribosomal
protein-like [Arabidopsis thaliana]
Length = 407
Score = 178 bits (448), Expect = 4e-44
Identities = 103/254 (40%), Positives = 142/254 (55%), Gaps = 5/254 (1%)
Query: 7 DLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHG 66
D++ + LP V P RPD++ + QP AG + E+ G G
Sbjct: 19 DMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRA 78
Query: 67 MARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATA 122
++R+ R+ + AAF RGGR P K+ + +N +R AI+SAIAATA
Sbjct: 79 VSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATA 138
Query: 123 NYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAG 182
+V ARGH I+NVP++PL+V D + V KT ++ K++G +DD E+AK GIR G
Sbjct: 139 VPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPG 198
Query: 183 KGKMRGRRYKKAKGPLIVVG-KNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTV 241
KGKMR RRY KGPL+V G + IV RN PGV++ V+ L + LAPG H GR +
Sbjct: 199 KGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVI 258
Query: 242 WTVSAIERLKEIYG 255
WT SA E+L+ IYG
Sbjct: 259 WTKSAFEKLESIYG 272
>pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 246
Score = 178 bits (447), Expect = 6e-44
Identities = 107/252 (42%), Positives = 144/252 (56%), Gaps = 7/252 (2%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
M+ ++DL+G E++LP VF TP R DLI +AV A+ +R Q G D AG R E+
Sbjct: 1 MEATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAES 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
G G G A V +L R VP A GR HPPK EK +N KER+LA+ SA+AA
Sbjct: 61 FGSGRGQAHVPKLDGRARR---VPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAA 117
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TA+ D+V RGH D ++P++V DD + + KT+E + + L + DI+RA E T I+
Sbjct: 118 TADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADE-TKIK 175
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AG+G RGR+Y++ L V ARN G DV + E LAPG PGRLT
Sbjct: 176 AGQGSARGRKYRRPASILFVTSDEPST--AARNLAGADVATASEVNTEDLAPGGAPGRLT 233
Query: 241 VWTVSAIERLKE 252
V+T SA+ + E
Sbjct: 234 VFTESALAEVAE 245
>sp|P12735|RL4_HALMA 50S RIBOSOMAL PROTEIN L4E (HMAL4) (HL6) >gi|71069|pir||R5HS6H
ribosomal protein L4.eR [validated] - Haloarcula
marismortui >gi|148802|gb|AAA86860.1| (J05222) ribosomal
protein L6 [Haloarcula marismortui]
Length = 246
Score = 176 bits (441), Expect = 3e-43
Identities = 106/252 (42%), Positives = 143/252 (56%), Gaps = 7/252 (2%)
Query: 1 MKVKVFDLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
M+ ++DL+G E++LP VF TP R DLI +AV A+ +R Q G D AG R E+
Sbjct: 1 MQATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAES 60
Query: 61 IGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAA 120
G G G A V + R VP A GR HPPK EK +N KER+LA+ SA+AA
Sbjct: 61 FGSGRGQAHVPKQDGRARR---VPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAA 117
Query: 121 TANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIR 180
TA+ D+V RGH D ++P++V DD + + KT+E + + L + DI+RA E T I+
Sbjct: 118 TADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADE-TKIK 175
Query: 181 AGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLT 240
AG+G RGR+Y++ L V ARN G DV + E LAPG PGRLT
Sbjct: 176 AGQGSARGRKYRRPASILFVTSDEPST--AARNLAGADVATASEVNTEDLAPGGAPGRLT 233
Query: 241 VWTVSAIERLKE 252
V+T SA+ + E
Sbjct: 234 VFTESALAEVAE 245
>sp|P09180|RL4_DROME 60S RIBOSOMAL PROTEIN L4 (L1) >gi|71068|pir||R5FFL1 ribosomal
protein DL1 - fruit fly (Drosophila melanogaster)
>gi|8488|emb|CAA31759.1| (X13382) put. ribosomal protein
L1 [Drosophila melanogaster]
Length = 407
Score = 170 bits (426), Expect = 2e-41
Identities = 95/259 (36%), Positives = 143/259 (54%), Gaps = 6/259 (2%)
Query: 3 VKVFDLNGQPVDE--IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
V V+ +P + I LP VF P RPD++ + Q +AG + E+
Sbjct: 10 VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69
Query: 61 IGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMS 116
G G +AR+ R++ + AF RGGR P K + +N +RR A++S
Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129
Query: 117 AIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEK 176
AIAA+ +V+++GH+ID V + PL+V D++QKV KT++ ++L IW DI++ +
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189
Query: 177 TGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHP 236
RAG+G MR RR +GPL+V K+EG+ RN PG++ + VD L V LAPG H
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNVLKLAPGGHV 249
Query: 237 GRLTVWTVSAIERLKEIYG 255
GR +WT SA RL +++G
Sbjct: 250 GRFVIWTESAFARLNDLFG 268
>sp|P50878|RL4_RAT 60S RIBOSOMAL PROTEIN L4 (L1) >gi|1165139|emb|CAA57671.1| (X82180)
ribosomal protein L4 [Rattus norvegicus]
Length = 421
Score = 170 bits (426), Expect = 2e-41
Identities = 90/244 (36%), Positives = 137/244 (55%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG 81
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+AA+A +V ++G
Sbjct: 82 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKG 141
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H ++ VP+LPL+V D ++ KT+E ++ KKL W+DI++ +RAGKGKMR RR
Sbjct: 142 HCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 201
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP I+ ++ GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 202 IQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 261
Query: 252 EIYG 255
E+YG
Sbjct: 262 ELYG 265
>gb|AAD32206.1|AF134732_1 (AF134732) 60S ribosomal protein L1 [Prunus armeniaca]
Length = 408
Score = 170 bits (426), Expect = 2e-41
Identities = 98/254 (38%), Positives = 139/254 (54%), Gaps = 5/254 (1%)
Query: 7 DLNGQPVDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHG 66
D+ + LP V RPD++ + QP AG + E+ G G
Sbjct: 20 DMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRA 79
Query: 67 MARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATA 122
++R+ R+ + AF RGGR P K+ + IN ++R A++SAIAA+A
Sbjct: 80 VSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASA 139
Query: 123 NYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAG 182
+V ARGH I+ VP+LPL+V D ++ V +T ++ K++G + D E+AK+ IR G
Sbjct: 140 VPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPG 199
Query: 183 KGKMRGRRYKKAKGPLIVVG-KNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTV 241
KGKMR RRY KGPLIV G + +V RN PG+D++ V+ L + LAPG H GR V
Sbjct: 200 KGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVV 259
Query: 242 WTVSAIERLKEIYG 255
WT SA E+L IYG
Sbjct: 260 WTKSAFEKLDSIYG 273
>pir||JC4277 ribosomal protein L4, cytosolic [validated] - rat
Length = 421
Score = 169 bits (424), Expect = 3e-41
Identities = 90/244 (36%), Positives = 137/244 (55%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG 81
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+AA+A +V ++G
Sbjct: 82 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKG 141
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H ++ VP+LPL+V D ++ KT+E ++ KKL W+DI++ +RAGKGKMR RR
Sbjct: 142 HRVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 201
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP I+ ++ GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 202 IQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 261
Query: 252 EIYG 255
E+YG
Sbjct: 262 ELYG 265
>gb|AAG22173.1| (AE003763) RpL1 gene product [Drosophila melanogaster]
Length = 401
Score = 169 bits (423), Expect = 4e-41
Identities = 94/259 (36%), Positives = 143/259 (54%), Gaps = 6/259 (2%)
Query: 3 VKVFDLNGQPVDE--IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
V V+ +P + I LP VF P RPD++ + Q +AG + E+
Sbjct: 10 VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69
Query: 61 IGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMS 116
G G +AR+ R++ + AF RGGR P K + +N +RR A++S
Sbjct: 70 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129
Query: 117 AIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEK 176
AIAA+ +V+++GH+ID V + PL+V D++QKV KT++ ++L IW DI++ +
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189
Query: 177 TGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHP 236
RAG+G MR RR +GPL+V K+EG+ RN PG++ + VD L + LAPG H
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 249
Query: 237 GRLTVWTVSAIERLKEIYG 255
GR +WT SA RL +++G
Sbjct: 250 GRFVIWTESAFARLNDLFG 268
>sp|O02056|RL4_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L4 >gi|7494740|pir||T34031
hypothetical protein B0041.4 - Caenorhabditis elegans
>gi|1947110|gb|AAC24253.1| (AF000196) Similar to
ribosomal protein L1; coded for by C. elegans cDNA
CEMSF45F; coded for by C. elegans cDNA cm11c5; coded for
by C. elegans cDNA cm11d4; coded for by C. elegans cDNA
yk75c9.3; coded for by C. elegans cDNA yk82h2.3; coded
for by C. e>
Length = 345
Score = 168 bits (421), Expect = 6e-41
Identities = 93/245 (37%), Positives = 139/245 (55%), Gaps = 4/245 (1%)
Query: 15 EIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLK 74
+I LP VF TP RPDL+ +R Q + AGK+ E+ G G +AR+ R++
Sbjct: 20 QIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVR 79
Query: 75 TPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKAR 130
+ AF RGG P KV + +N ++R A+ SAIAA+ +++AR
Sbjct: 80 GGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQAR 139
Query: 131 GHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRR 190
GH+ID V ++PL+V D ++ KT+E ++ +W DIE+ RAGKGK+R R+
Sbjct: 140 GHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQ 199
Query: 191 YKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERL 250
+K+ GP+++ G++ RN PGVDV+ V+ L + LAPG H GRL +WT SA ++L
Sbjct: 200 HKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKL 259
Query: 251 KEIYG 255
IYG
Sbjct: 260 DTIYG 264
>sp|P49691|RL4_ARATH 60S RIBOSOMAL PROTEIN L4 (L1)
Length = 404
Score = 167 bits (419), Expect = 1e-40
Identities = 98/245 (40%), Positives = 135/245 (55%), Gaps = 5/245 (2%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP V P RPD++ + QP AG + E+ G G ++R+ R+
Sbjct: 25 VTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPG 84
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AAF RGGR P K+ + +N +R AI+SAIAATA +V ARG
Sbjct: 85 GGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARG 144
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+NVP++PL+V D + V KT ++ K++ +DD E+AK GKGKMR RRY
Sbjct: 145 HKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIVAYDDAEKAKNXXXXXPGKGKMRNRRY 204
Query: 192 KKAKGPLIVVG-KNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERL 250
KGPL+V G + IV RN PGV++ V+ L + LAPG H GR +WT SA E+L
Sbjct: 205 ISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKL 264
Query: 251 KEIYG 255
+ IYG
Sbjct: 265 ESIYG 269
>dbj|BAA04887.1| (D23660) ribosomal protein [Homo sapiens]
Length = 427
Score = 167 bits (418), Expect = 1e-40
Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 22 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG 81
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+AA+A +V ++G
Sbjct: 82 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKG 141
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ VP+LPL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 142 HRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 201
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP I+ ++ GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 202 IQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 261
Query: 252 EIYG 255
E+YG
Sbjct: 262 ELYG 265
>sp|P49165|RL4_URECA 60S RIBOSOMAL PROTEIN L4 (L1) >gi|7440596|pir||T12048 ribosomal
protein L4 - spoonworm (Urechis caupo)
>gi|929961|gb|AAA74021.1| (U30495) ribosomal protein
[Urechis caupo]
Length = 386
Score = 167 bits (418), Expect = 1e-40
Identities = 89/244 (36%), Positives = 135/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP AG + E+ G G +AR+ R++
Sbjct: 21 VTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRG 80
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RG R P K + +N +RR A++SAIAAT +V ++G
Sbjct: 81 GGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKG 140
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ +P++PL+V D ++ + KT+E + ++L W D+E+ K RAGKGK+R RR
Sbjct: 141 HCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRA 200
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GPLI+ G + GI RN PG+ +V V+ L + +APG H GR +WT SA ++L
Sbjct: 201 IQRRGPLIIYGTDNGISRAFRNIPGITLVNVNRLNLLSMAPGGHVGRFCIWTESAFKQLD 260
Query: 252 EIYG 255
IYG
Sbjct: 261 NIYG 264
>pir||T40797 60s ribosomal protein l2 - fission yeast (Schizosaccharomyces
pombe) >gi|3810827|emb|CAA21788.1| (AL032684) 60s
ribosomal protein l2 [Schizosaccharomyces pombe]
Length = 363
Score = 166 bits (416), Expect = 3e-40
Identities = 95/258 (36%), Positives = 142/258 (54%), Gaps = 5/258 (1%)
Query: 3 VKVFDLNGQPVDE-IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
V ++ +G E I LP VF P RPDL+R A ++ QP AG + E+
Sbjct: 8 VSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67
Query: 62 GKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSA 117
G G +AR+ R+ + AAF R GR P K + +N+ E+R AI SA
Sbjct: 68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127
Query: 118 IAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKT 177
+AA+ ++ ARGH I+ +P++PL+V D +Q KT+E + K++ + D+ +
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSR 187
Query: 178 GIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPG 237
+RAGKGK+R RR+ + +GPL+V ++ GIV RN PGV++V V L + LAPG H G
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247
Query: 238 RLTVWTVSAIERLKEIYG 255
R +WT SA L ++G
Sbjct: 248 RFVIWTKSAFGLLDSVFG 265
>emb|CAB88236.1| (AL353012) 60s ribosomal protein l2 [Schizosaccharomyces pombe]
Length = 363
Score = 165 bits (414), Expect = 4e-40
Identities = 94/258 (36%), Positives = 143/258 (54%), Gaps = 5/258 (1%)
Query: 3 VKVFDLNGQPVDE-IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
V +++ +G E + LP VF P RPDL+R A ++ QP AG + E+
Sbjct: 8 VSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67
Query: 62 GKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSA 117
G G +AR+ R+ + AAF R GR P K + +N+ E+R AI SA
Sbjct: 68 GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127
Query: 118 IAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKT 177
+AA+ ++ ARGH I+ +P++PL+V D +Q KT+E + K++ + D+ +
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSR 187
Query: 178 GIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPG 237
+RAGKGK+R RR+ + +GPL+V ++ GIV RN PGV++V V L + LAPG H G
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247
Query: 238 RLTVWTVSAIERLKEIYG 255
R +WT SA L ++G
Sbjct: 248 RFVIWTKSAFGLLDSVFG 265
>sp|P36578|RL4_HUMAN 60S RIBOSOMAL PROTEIN L4 (L1)
Length = 427
Score = 165 bits (413), Expect = 6e-40
Identities = 90/244 (36%), Positives = 135/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 22 VTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG 81
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+AA+A +V ++G
Sbjct: 82 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKG 141
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ P+LPL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 142 HRIEEFPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 201
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP I+ ++ GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 202 IQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 261
Query: 252 EIYG 255
E+YG
Sbjct: 262 ELYG 265
>sp|P02385|RL4B_XENLA 60S RIBOSOMAL PROTEIN L4B (L1B) >gi|71067|pir||R5XL1B ribosomal
protein XL1b - African clawed frog (fragment)
>gi|899428|emb|CAA28844.1| (X05217) ribosomal protein
L1b (396 AA) [Xenopus laevis] >gi|224829|prf||1202260B
ribosomal protein L1b [Xenopus laevis]
Length = 396
Score = 164 bits (412), Expect = 7e-40
Identities = 85/244 (34%), Positives = 136/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ +P VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 21 VTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRG 80
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R A+ SA+AA+A ++ ++G
Sbjct: 81 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKG 140
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ +P++PL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 141 HRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 200
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP ++ +N GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 201 IQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLD 260
Query: 252 EIYG 255
++YG
Sbjct: 261 DLYG 264
>sp|P08429|RL4A_XENLA 60S RIBOSOMAL PROTEIN L4A (L1A) >gi|65082|emb|CAA28843.1| (X05216)
L1a (AA 1-396) [Xenopus laevis]
Length = 396
Score = 164 bits (411), Expect = 1e-39
Identities = 85/244 (34%), Positives = 136/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ +P VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 26 VTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRG 85
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R A+ SA+AA+A ++ ++G
Sbjct: 86 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKG 145
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ +P++PL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 146 HRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 205
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP ++ +N G+V RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 206 IQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLD 265
Query: 252 EIYG 255
++YG
Sbjct: 266 DLYG 269
>pir||R5XL1A ribosomal protein XL1a - African clawed frog
>gi|224828|prf||1202260A ribosomal protein L1a [Xenopus
laevis]
Length = 396
Score = 164 bits (411), Expect = 1e-39
Identities = 85/244 (34%), Positives = 136/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ +P VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 26 VTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRG 85
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R A+ SA+AA+A ++ ++G
Sbjct: 86 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKG 145
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ +P++PL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 146 HRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 205
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP ++ +N G+V RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 206 IQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLD 265
Query: 252 EIYG 255
++YG
Sbjct: 266 DLYG 269
>sp|Q28346|RL4_CANFA 60S RIBOSOMAL PROTEIN L4 (L1) >gi|1487948|emb|CAA68182.1| (X99909)
ribosomal protein L4 [Canis sp.]
Length = 420
Score = 164 bits (411), Expect = 1e-39
Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 21 VTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRG 80
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+A + +V ++G
Sbjct: 81 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKG 140
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ VP+LPL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 141 HRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 200
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP I+ ++ GI+ R HPG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 201 IQRRGPCIIYNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 260
Query: 252 EIYG 255
++YG
Sbjct: 261 DLYG 264
>gi|6319505 Ribosomal protein L4A (L2A) (rp2) (YL2); Rpl4ap [Saccharomyces
cerevisiae] >gi|585880|sp|P10664|RL4A_YEAST 60S
RIBOSOMAL PROTEIN L4-A (L2A) (RP2)
>gi|625514|pir||S45887 ribosomal protein L4.e.A,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|498759|emb|CAA53687.1| (X76078) ribosomal protein
L2B [Saccharomyces cerevisiae]
>gi|536244|emb|CAA84973.1| (Z35900) ORF YBR031w
[Saccharomyces cerevisiae] >gi|1587588|prf||2206497L
ribosomal protein L2B [Saccharomyces cerevisiae]
Length = 362
Score = 163 bits (408), Expect = 2e-39
Identities = 92/259 (35%), Positives = 139/259 (53%), Gaps = 5/259 (1%)
Query: 2 KVKVFDLNGQPV-DEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
+V V L G+ + + LP VF P RPD++ + ++ Q AG + E+
Sbjct: 5 QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAES 64
Query: 61 IGKGHGMARVERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMS 116
G G +AR+ R+ AF RGGR P K + +N E+R A S
Sbjct: 65 WGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATAS 124
Query: 117 AIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEK 176
AIAATA +V ARGH ++ +P++PL+V DL+ + KT+E K +G D+ + +
Sbjct: 125 AIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKS 184
Query: 177 TGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHP 236
+RAGKGK R RR+ + +GPL+V ++ GIV RN PGV+ V +L + LAPG H
Sbjct: 185 KKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHL 244
Query: 237 GRLTVWTVSAIERLKEIYG 255
GR +WT +A +L +++G
Sbjct: 245 GRFVIWTEAAFTKLDQVWG 263
>gi|6320215 Ribosomal protein L4B (L2B) (rp2) (YL2); Rpl4bp [Saccharomyces
cerevisiae] >gi|1350714|sp|P49626|RL4B_YEAST 60S
RIBOSOMAL PROTEIN L4-B (L2B) (RP2)
>gi|1078341|pir||S50993 ribosomal protein L4.e.B,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|642817|emb|CAA88072.1| (Z48008) Rlp2bp
[Saccharomyces cerevisiae] >gi|1216219|emb|CAA65204.1|
(X95966) 60S ribosomal protein [Saccharomyces
cerevisiae] >gi|1431432|emb|CAA98832.1| (Z74308) ORF
YDR012w [Saccharomyces cerevisiae]
Length = 362
Score = 163 bits (408), Expect = 2e-39
Identities = 92/259 (35%), Positives = 139/259 (53%), Gaps = 5/259 (1%)
Query: 2 KVKVFDLNGQPV-DEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
+V V L G+ + + LP VF P RPD++ + ++ Q AG + E+
Sbjct: 5 QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAES 64
Query: 61 IGKGHGMARVERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMS 116
G G +AR+ R+ AF RGGR P K + +N E+R A S
Sbjct: 65 WGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATAS 124
Query: 117 AIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEK 176
AIAATA +V ARGH ++ +P++PL+V DL+ + KT+E K +G D+ + +
Sbjct: 125 AIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKS 184
Query: 177 TGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHP 236
+RAGKGK R RR+ + +GPL+V ++ GIV RN PGV+ V +L + LAPG H
Sbjct: 185 KKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHL 244
Query: 237 GRLTVWTVSAIERLKEIYG 255
GR +WT +A +L +++G
Sbjct: 245 GRFVIWTEAAFTKLDQVWG 263
>gi|4506653 ribosomal protein L4 [Homo sapiens] >gi|7440597|pir||T09551
ribosomal protein L4 - human >gi|560476|emb|CAA52154.1|
(X73974) ribosomal protein L4 [Homo sapiens]
Length = 426
Score = 162 bits (407), Expect = 3e-39
Identities = 90/244 (36%), Positives = 136/244 (54%), Gaps = 5/244 (2%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 22 VTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVSELAGHQTRAESWGTGRAVARIPRVRG 81
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+AA+A +V ++G
Sbjct: 82 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKG 141
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ P+LPL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 142 HRIEEFPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRI 201
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
++ +GP I+ ++ GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 202 QR-RGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 260
Query: 252 EIYG 255
E+YG
Sbjct: 261 ELYG 264
>pir||S41640 ribosomal protein L4.e - fission yeast (Schizosaccharomyces pombe)
Length = 358
Score = 162 bits (405), Expect = 5e-39
Identities = 94/259 (36%), Positives = 143/259 (54%), Gaps = 6/259 (2%)
Query: 3 VKVFDLNGQPVDE-IELPKVFFTPFRPDLIRRAV-IASWTHRIQPQGRDPMAGKRRVTEN 60
V +++ +G E + LP VF P RPDL+R V A ++ QP AG + E+
Sbjct: 8 VSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVVHTAVAKNKRQPYAVSEKAGHQTSAES 67
Query: 61 IGKGHGMARVERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMS 116
G G +AR+ R+ + AAF R GR P K + +N+ E+R A S
Sbjct: 68 WGTGRALARIPRVGGGGTSRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYATCS 127
Query: 117 AIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEK 176
A+AA+ ++ ARGH I+ +P++PL+V D +Q KT+E + K++ + D+ +
Sbjct: 128 AVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANS 187
Query: 177 TGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHP 236
+RAGKGK+R RR+ + +GPL+V ++ GIV RN PGV++V V L + LAPG H
Sbjct: 188 RKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 247
Query: 237 GRLTVWTVSAIERLKEIYG 255
GR +WT SA L ++G
Sbjct: 248 GRFVIWTKSAFGLLDSVFG 266
>sp|P49669|RL4_TRYBB 60S RIBOSOMAL PROTEIN L4 (L1) >gi|1015931|emb|CAA91141.1| (Z54340)
ribosomal protein L1 [Trypanosoma brucei]
Length = 374
Score = 161 bits (404), Expect = 6e-39
Identities = 91/247 (36%), Positives = 140/247 (55%), Gaps = 5/247 (2%)
Query: 13 VDEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVER 72
V LP VF P R D+++ + QP + ++G + TE+ G G +AR+ R
Sbjct: 18 VGTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPR 77
Query: 73 LK----TPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVK 128
+ + AF RGGR P K+ + IN ++R A++SA+AA++ +V
Sbjct: 78 IHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVM 137
Query: 129 ARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRG 188
+RGH I+NV ++PL+V D ++ KT+E K +G DD+ R + IRAG+GKMR
Sbjct: 138 SRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGKMRN 197
Query: 189 RRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIE 248
RRY +GP++V+ N+G RN G+D+ V++L + HLAPG H GR +WT SA E
Sbjct: 198 RRYVARRGPMLVMPDNKG-TRAFRNIFGLDLANVNSLNLLHLAPGGHVGRFIIWTKSAFE 256
Query: 249 RLKEIYG 255
+L +I+G
Sbjct: 257 KLDKIFG 263
>emb|CAA29796.1| (X06552) L1a protein [Xenopus laevis]
Length = 396
Score = 160 bits (401), Expect = 1e-38
Identities = 84/244 (34%), Positives = 135/244 (54%), Gaps = 4/244 (1%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ +P VF P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 26 VTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRG 85
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R A+ SA+AA+A ++ ++G
Sbjct: 86 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKG 145
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ +P++PL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 146 HRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRR 205
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
+ +GP ++ +N G+V RN PG+ ++ V L + LA G H GR +WT SA +L
Sbjct: 206 IQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLALGGHVGRFCIWTESAFRKLD 265
Query: 252 EIYG 255
++YG
Sbjct: 266 DLYG 269
>dbj|BAA78600.1| (AU066549) 60S ribosomal protein L4 [Chlamydomonas sp. HS-5]
Length = 363
Score = 160 bits (401), Expect = 1e-38
Identities = 89/208 (42%), Positives = 123/208 (58%), Gaps = 4/208 (1%)
Query: 52 AGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINK 107
AG + E+ G G ++R+ R+ + AAF RGGR P K + +N
Sbjct: 15 AGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKTWRRWHRKVNL 74
Query: 108 KERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIW 167
++R A+ SA+AA+A +V ARGH I+ VP++PL++ D ++ VSKT + EI KK+G
Sbjct: 75 TQKRHAVASALAASALPSLVMARGHRIEQVPEVPLVLSDAVESVSKTSKALEILKKIGAA 134
Query: 168 DDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGV 227
D+E+AK +R GKGKMR RRY KGPLIV + GI RN GV+V VD+L +
Sbjct: 135 PDVEKAKASKQLRRGKGKMRNRRYTLRKGPLIVFANDSGISRAFRNLTGVEVTSVDHLNL 194
Query: 228 EHLAPGTHPGRLTVWTVSAIERLKEIYG 255
LAPG H GR VWT SA ++L I+G
Sbjct: 195 LQLAPGGHMGRFCVWTKSAFDKLDSIFG 222
>sp|P35679|RL4_SCHPO 60S RIBOSOMAL PROTEIN L4 (L2) >gi|312177|emb|CAA51666.1| (X73146)
ribosomal protein L2 [Schizosaccharomyces pombe]
Length = 357
Score = 158 bits (396), Expect = 6e-38
Identities = 91/258 (35%), Positives = 140/258 (53%), Gaps = 5/258 (1%)
Query: 3 VKVFDLNGQPVDE-IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENI 61
V +++ +G E + LP VF P RPDL+R A ++ QP AG + E+
Sbjct: 8 VSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67
Query: 62 GKGHGMARVERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSA 117
G G +AR+ R+ + AAF R GR K + +N+ E+R A SA
Sbjct: 68 GTGRALARIPRVGGGGTSRSGQAAFGNMCRSGRMFASTKTWRKWHVKVNQNEKRYATCSA 127
Query: 118 IAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKT 177
+AA+ ++ ARGH I+ +P++PL+V D +Q KT+E + K++ + D+ +
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSR 187
Query: 178 GIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPG 237
+RAGKGK+ RR+ + +GPL+V ++ GIV RN PGV++V V L + LAPG H G
Sbjct: 188 KLRAGKGKLANRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247
Query: 238 RLTVWTVSAIERLKEIYG 255
R +WT SA L ++G
Sbjct: 248 RFVIWTKSAFGLLDSVFG 265
>gb|AAA34974.1| (J03195) ribosomal protein L2 [Saccharomyces cerevisiae]
Length = 362
Score = 157 bits (393), Expect = 1e-37
Identities = 90/259 (34%), Positives = 136/259 (51%), Gaps = 5/259 (1%)
Query: 2 KVKVFDLNGQPV-DEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
+V V L G+ + + LP VF P RPD++ + ++ Q AG + E+
Sbjct: 5 QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTLFTSVNKNKRQAYAVSEKAGHQTSAES 64
Query: 61 IGKGHGMARVERL----KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMS 116
G G +AR+ R+ AF RGGR P K + +N E+R A S
Sbjct: 65 WGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATAS 124
Query: 117 AIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEK 176
AIAATA +V ARGH ++ +P++PL+V DL + KT+E K +G D+ + +
Sbjct: 125 AIAATAVASLVLARGHRVETIPEIPLVVSTDLDSIQKTKEAVAALKAVGAHSDLLKVLKS 184
Query: 177 TGIRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHP 236
+RAGKGK R RR+ + +GPL+V ++ GIV RN P V+ V +L + LAP H
Sbjct: 185 KKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPSVETANVASLNLLQLAPSAHL 244
Query: 237 GRLTVWTVSAIERLKEIYG 255
GR +WT +A +L +++G
Sbjct: 245 GRFVIWTEAAFTKLDQVWG 263
>pir||S39803 ribosomal protein L4 - human >gi|307385|gb|AAA60281.1| (L20868)
ribosomal protein L4 [Homo sapiens]
Length = 425
Score = 155 bits (388), Expect = 5e-37
Identities = 89/244 (36%), Positives = 135/244 (54%), Gaps = 6/244 (2%)
Query: 16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKT 75
+ LP V P RPD++ + QP +AG + E+ G G +AR+ R++
Sbjct: 22 VTLPAVK-APIRPDMVNFVHTNLREKQEQPYAVSELAGHQTRAESWGTGRAVARIPRVRG 80
Query: 76 PPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARG 131
+ AF RGGR P K + +N ++R AI SA+AA+A +V ++G
Sbjct: 81 GGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKG 140
Query: 132 HIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRY 191
H I+ P+LPL+V D ++ KT+E + KKL W+DI++ +RAGKGKMR RR
Sbjct: 141 HRIEEFPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRI 200
Query: 192 KKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLK 251
++ +GP I+ ++ GI+ RN PG+ ++ V L + LAPG H GR +WT SA +L
Sbjct: 201 QR-RGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD 259
Query: 252 EIYG 255
E+YG
Sbjct: 260 ELYG 263
>gb|AAA34975.1| (M22583) ribosomal protein L2 [Saccharomyces cerevisiae]
Length = 200
Score = 108 bits (266), Expect = 1e-22
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 9/197 (4%)
Query: 2 KVKVFDLNGQPV-DEIELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTEN 60
+V V L G+ + + LP VF P RPD++ + ++ Q AG + E+
Sbjct: 5 QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAES 64
Query: 61 IGKGHGMARVERL------KTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAI 114
G G +AR+ R+ ++ R AF RGGR P K + +N E+R A
Sbjct: 65 WGTGRAVARIPRVGGGGTGRSGQR--AFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYAT 122
Query: 115 MSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAK 174
SAIAATA +V ARGH ++ +P++PL+V DL+ + KT+E K +G D+ +
Sbjct: 123 ASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVL 182
Query: 175 EKTGIRAGKGKMRGRRY 191
+ +RAGKGK R RR+
Sbjct: 183 KSKKLRAGKGKYRNRRW 199
>sp||RL1_ENTHI_2 [Segment 2 of 2] 60S RIBOSOMAL PROTEIN L1
>gi|2350919|dbj|BAA21989.1| (AB002744) ribosomal protein
L1 [Entamoeba histolytica]
Length = 137
Score = 90.5 bits (221), Expect = 2e-17
Identities = 45/106 (42%), Positives = 65/106 (60%), Gaps = 1/106 (0%)
Query: 151 VSKTRETREIFKKLGIWDDIERAKEKTGIRAGKGKMRGRRYKKAKGPLIVVGKNE-GIVF 209
+ KT++ + KK+ + D+ + IRAG+GKMRGR+ K+ KGPL+V G ++ V
Sbjct: 7 IKKTKQAVYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVK 66
Query: 210 GARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLKEIYG 255
RN PGVD V+NL V +LAPG H GR +W SA ++L +G
Sbjct: 67 AFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWPESAFKKLNTTFG 112
>emb|CAA29998.1| (X06881) put. ribosomal protein L1 fragment (10 is 2nd base in
codon) [Drosophila melanogaster]
Length = 123
Score = 80.8 bits (196), Expect = 2e-14
Identities = 43/118 (36%), Positives = 70/118 (58%), Gaps = 4/118 (3%)
Query: 59 ENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAI 114
E+ G G +AR+ R++ + AF RGGR P K + +N +RR A+
Sbjct: 6 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRRVNVNQRRYAL 65
Query: 115 MSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIER 172
+SAIAA+ +V+++GH+ID V + PL+V D++QKV KT++ ++L IW DI++
Sbjct: 66 VSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQK 123
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102034453
Number of Sequences: 2977
Number of extensions: 4350631
Number of successful extensions: 9171
Number of sequences better than 1.0e-10: 44
Number of HSP's better than 0.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9051
Number of HSP's gapped (non-prelim): 44
length of query: 255
length of database: 189,106,746
effective HSP length: 52
effective length of query: 203
effective length of database: 157,985,422
effective search space: 32071040666
effective search space used: 32071040666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)