BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2123 (rps19P) DE:SSU ribosomal protein S19P (rps19P)
(132 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75147 ssu ribosomal protein s19p (rps19p) PAB2123 - Pyroco... 268 1e-71
sp|O59422|RS19_PYRHO 30S RIBOSOMAL PROTEIN S19P >gi|7440520|pir|... 266 9e-71
sp|O26114|RS19_METTH 30S RIBOSOMAL PROTEIN S19P >gi|7440522|pir|... 188 2e-47
sp|P54018|RS19_METJA 30S RIBOSOMAL PROTEIN S19P >gi|2119098|pir|... 187 5e-47
sp|Q9YF74|RS19_AERPE 30S RIBOSOMAL PROTEIN S19P >gi|7521381|pir|... 178 2e-44
gi|11499505 SSU ribosomal protein S19P (rps19P) [Archaeoglobus f... 175 3e-43
sp|Q9UXA3|RS19_SULSO 30S RIBOSOMAL PROTEIN S19P >gi|6015762|emb|... 163 8e-40
gb|AAK41014.1| SSU ribosomal protein S19AB (rps19AB) [Sulfolobus... 163 8e-40
sp|P20284|RS19_HALMA 30S RIBOSOMAL PROTEIN S19 (HMAS19) (HS18) >... 159 2e-38
sp|P15010|RS19_HALHA 30S RIBOSOMAL PROTEIN S19 (HHAS19) >gi|1138... 151 4e-36
sp|P20342|RS15_XENLA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) >gi... 147 4e-35
gi|4506687 ribosomal protein S15 [Homo sapiens] >gi|6677799|ref|... 147 4e-35
gb|AAB24655.1| Rig homolog [human, brain, Peptide Partial, 135 aa] 147 4e-35
gb|AAD16877.1| (AF104059) ribosomal protein S15 [Salmo salar] 145 2e-34
emb|CAC12391.1| (AL445067) probable 30S ribosomal protein S19 [T... 142 1e-33
gb|AAC32121.1| (AF051217) probable 40S ribosomal protein S15 [Pi... 141 4e-33
sp|P70066|RS15_XIPMA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) >gi... 140 5e-33
pir||T21828 hypothetical protein F36A2.6 - Caenorhabditis elegan... 139 1e-32
pir||S71259 ribosomal protein S15, cytosolic - Arabidopsis thali... 138 3e-32
sp|Q08112|RS15_ARATH 40S RIBOSOMAL PROTEIN S15 >gi|629556|pir||S... 137 6e-32
emb|CAC05477.1| (AL391712) ribosomal protein S15-like [Arabidops... 137 6e-32
emb|CAC05476.1| (AL391712) ribosomal protein S15-like [Arabidops... 136 8e-32
pir||T37489 40s ribosomal protein s15 - fission yeast (Schizosa... 136 1e-31
pir||T40951 40s ribosomal protein s15 - fission yeast (Schizosa... 136 1e-31
emb|CAA33091.1| (X14967) ribosomal protein S19 (AA 1-115) [Halob... 135 2e-31
gb|AAF57984.1| (AE003806) CG8332 gene product [Drosophila melano... 135 2e-31
dbj|BAB11627.1| (AB016875) 40S ribosomal protein S15 [Arabidopsi... 132 1e-30
emb|CAC05475.1| (AL391712) ribosomal protein S15-like [Arabidops... 131 3e-30
sp|P34737|RS15_PODAN 40S RIBOSOMAL PROTEIN S15 (S12) >gi|1078669... 131 3e-30
sp|P31674|RS15_ORYSA 40S RIBOSOMAL PROTEIN S15 >gi|7440527|pir||... 121 3e-27
gi|6324533 40S ribosomal protein S15 (S21) (rp52) (RIG protein);... 118 3e-26
gb|AAB47433.1| (L34568) surface antigen [Cryptosporidium parvum] 117 4e-26
dbj|BAB10549.1| (AB008265) 40S ribosomal protein S15-like protei... 112 1e-24
emb|CAB63846.1| (AJ251916) ribosomal protein S15 [Pisum sativum] 102 1e-21
sp|P51429|RS15_NAEGR 40S RIBOSOMAL PROTEIN S15 >gi|695385|gb|AAA... 98 3e-20
sp|P44385|RS19_HAEIN 30S RIBOSOMAL PROTEIN S19 >gi|1075269|pir||... 80 1e-14
pir||B82059 ribosomal protein S19 VC2592 [imported] - Vibrio cho... 78 3e-14
sp|P02375|RS19_ECOLI 30S RIBOSOMAL PROTEIN S19 >gi|71022|pir||R3... 77 7e-14
pir||C81268 30S ribosomal protein S19 Cj1703c [imported] - Campy... 77 9e-14
pir||A83116 30S ribosomal protein S19 PA4259 [imported] - Pseudo... 77 9e-14
gi|6324365 protein of the small subunit of the mitochondrial rib... 76 2e-13
sp|Q9ZJR7|RS19_HELPJ 30S RIBOSOMAL PROTEIN S19 >gi|7440526|pir||... 76 2e-13
sp|P56026|RS19_HELPY 30S RIBOSOMAL PROTEIN S19 >gi|7440517|pir||... 76 2e-13
pir||D82915 ribosomal protein S19 UU235 [imported] - Ureaplasma ... 74 8e-13
pir||C75534 ribosomal protein S19 - Deinococcus radiodurans (str... 73 1e-12
sp|P80381|RS19_THETH 30S RIBOSOMAL PROTEIN S19 >gi|10120582|pdb|... 73 1e-12
pdb|1QKF|A Chain A, Solution Structure Of The Ribosomal Protein ... 73 1e-12
sp|P47401|RS19_MYCGE 30S RIBOSOMAL PROTEIN S19 >gi|1361831|pir||... 72 3e-12
sp|Q9ZI46|RS19_AQUPY 30S RIBOSOMAL PROTEIN S19 >gi|4165869|gb|AA... 71 4e-12
sp|P10132|RS19_MYCCA 30S RIBOSOMAL PROTEIN S19 >gi|71023|pir||R3... 71 5e-12
sp|Q9XD32|RS19_LEPIN 30S RIBOSOMAL PROTEIN S19 >gi|5163208|gb|AA... 71 5e-12
sp|P38520|RS19_THEMA 30S RIBOSOMAL PROTEIN S19 >gi|7440519|pir||... 71 7e-12
pir||H70300 ribosomal protein S19 - Aquifex aeolicus >gi|2982775... 70 9e-12
sp|O83223|RS19_TREPA 30S RIBOSOMAL PROTEIN S19 >gi|7440508|pir||... 70 9e-12
sp|O66435|RS19_AQUAE 30S RIBOSOMAL PROTEIN S19 70 9e-12
sp|P75576|RS19_MYCPN 30S RIBOSOMAL PROTEIN S19 >gi|2146629|pir||... 70 1e-11
sp|P57587|RS19_BUCAI 30S RIBOSOMAL PROTEIN S19 >gi|10039179|dbj|... 69 2e-11
sp|P11256|RS19_YERPS 30S RIBOSOMAL PROTEIN S19 >gi|79205|pir||S0... 69 2e-11
pir||D81231 30S ribosomal protein S19 NMB0146 [imported] - Neiss... 69 3e-11
prf||1403295A ribosomal protein S19 [Bacillus stearothermophilus] 68 3e-11
sp|P73316|RS19_SYNY3 30S RIBOSOMAL PROTEIN S19 >gi|7440514|pir||... 68 3e-11
sp|P94271|RS19_BORBU 30S RIBOSOMAL PROTEIN S19 >gi|7440515|pir||... 68 3e-11
gb|AAF73629.1| (AE002173) ribosomal protein S19 [Chlamydophila p... 68 6e-11
sp|O24693|RS19_SYNP6 30S RIBOSOMAL PROTEIN S19 >gi|2446894|dbj|B... 68 6e-11
sp|Q9Z7R1|RS19_CHLPN 30S RIBOSOMAL PROTEIN S19 >gi|7440529|pir||... 68 6e-11
gi|11466367 ribosomal protein S19 [Mesostigma viride] >gi|725951... 68 6e-11
gi|11467341 ribosomal protein S19 [Cyanophora paradoxa] >gi|1338... 67 8e-11
sp|Q9ZCQ9|RS19_RICPR 30S RIBOSOMAL PROTEIN S19 >gi|7440518|pir||... 67 8e-11
sp|Q9Z9L0|RS19_BACHD 30S RIBOSOMAL PROTEIN S19 >gi|11276639|pir|... 67 8e-11
>pir||E75147 ssu ribosomal protein s19p (rps19p) PAB2123 - Pyrococcus abyssi
(strain Orsay) >gi|5457770|emb|CAB49260.1| (AJ248284)
SSU ribosomal protein S19P (rps19P) [Pyrococcus abyssi]
Length = 132
Score = 268 bits (679), Expect = 1e-71
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYN 60
MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYN
Sbjct: 1 MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYN 60
Query: 61 KPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI 120
KPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI
Sbjct: 61 KPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI 120
Query: 121 GATRSSMFVAVK 132
GATRSSMFVAVK
Sbjct: 121 GATRSSMFVAVK 132
>sp|O59422|RS19_PYRHO 30S RIBOSOMAL PROTEIN S19P >gi|7440520|pir||C71187 probable
ribosomal protein S19 - Pyrococcus horikoshii
>gi|3258207|dbj|BAA30890.1| (AP000007) 132aa long
hypothetical 30S ribosomal protein S19 [Pyrococcus
horikoshii]
Length = 132
Score = 266 bits (672), Expect = 9e-71
Identities = 129/132 (97%), Positives = 132/132 (99%)
Query: 1 MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYN 60
MARKEFRYRGYTLEQLMNMSLEELA+LLPARQRRSL+RGLTPEQKKLLRKIRLAKKGKYN
Sbjct: 1 MARKEFRYRGYTLEQLMNMSLEELARLLPARQRRSLRRGLTPEQKKLLRKIRLAKKGKYN 60
Query: 61 KPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI 120
KPIRTHCRDMI+LPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI
Sbjct: 61 KPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI 120
Query: 121 GATRSSMFVAVK 132
GATRSSMFVAVK
Sbjct: 121 GATRSSMFVAVK 132
>sp|O26114|RS19_METTH 30S RIBOSOMAL PROTEIN S19P >gi|7440522|pir||E69179 ribosomal
protein S19 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621053|gb|AAB84526.1| (AE000795)
ribosomal protein S15 (E.coli S19) [Methanobacterium
thermoautotrophicum]
Length = 136
Score = 188 bits (473), Expect = 2e-47
Identities = 96/136 (70%), Positives = 111/136 (81%), Gaps = 4/136 (2%)
Query: 1 MARKEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK-GKY 59
MARKEFRYRGYTLE+L M L+++ KL P+RQRRSLKRG P QKK+L KIR KK GK
Sbjct: 1 MARKEFRYRGYTLEELQEMPLDDVIKLFPSRQRRSLKRGFLPRQKKVLEKIRKIKKEGKT 60
Query: 60 N-KP--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHG 116
+P IRTHCRDMIVLPEMVG+T +HNGKEFV V+I+PEMIG Y GEFAPTRK+V+HG
Sbjct: 61 EGRPPVIRTHCRDMIVLPEMVGMTFGIHNGKEFVEVKIQPEMIGCYFGEFAPTRKKVEHG 120
Query: 117 APGIGATRSSMFVAVK 132
PG+GATR SMFV +K
Sbjct: 121 DPGMGATRFSMFVPLK 136
>sp|P54018|RS19_METJA 30S RIBOSOMAL PROTEIN S19P >gi|2119098|pir||E64322 ribosomal
protein S19 - Methanococcus jannaschii
>gi|1592272|gb|AAB98165.1| (U67475) SSU ribosomal
protein S19P (rpsS) [Methanococcus jannaschii]
Length = 152
Score = 187 bits (470), Expect = 5e-47
Identities = 93/132 (70%), Positives = 106/132 (79%), Gaps = 4/132 (3%)
Query: 5 EFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKI----RLAKKGKYN 60
EFRYRGYTLE+L M L E AKLLPARQRR+L RGLTP+QKKL KI RL KGK
Sbjct: 21 EFRYRGYTLEELQQMPLREFAKLLPARQRRTLLRGLTPQQKKLAMKIKKARRLLNKGKEP 80
Query: 61 KPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGI 120
+ IRTHCRD ++ P+MVGLT V+NGKEFV V++ PEMIGHYLGEF+ TRK VQHGAPG+
Sbjct: 81 RIIRTHCRDFVITPDMVGLTFGVYNGKEFVEVKVTPEMIGHYLGEFSLTRKPVQHGAPGM 140
Query: 121 GATRSSMFVAVK 132
GATRSSMFV +K
Sbjct: 141 GATRSSMFVPIK 152
>sp|Q9YF74|RS19_AERPE 30S RIBOSOMAL PROTEIN S19P >gi|7521381|pir||F72728 probable
ribosomal protein S19 APE0367 - Aeropyrum pernix
(strain K1) >gi|5104006|dbj|BAA79322.1| (AP000059) 163aa
long hypothetical 30S ribosomal protein S19 [Aeropyrum
pernix]
Length = 163
Score = 178 bits (447), Expect = 2e-44
Identities = 89/135 (65%), Positives = 109/135 (79%), Gaps = 6/135 (4%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
K+FRYRG TLE+L+ M +EELA+L PARQRRSL RGLTP Q+KLL K+R ++ G+
Sbjct: 29 KKFRYRGRTLEELLKMDIEELARLFPARQRRSLLRGLTPAQQKLLLKVRKIRRRLEEGRL 88
Query: 60 NKP--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGA 117
+P IRTH RDM++LPEMVGLTI V+NGKEF+PV+I PEMIGHYLGEF+PT + VQHG
Sbjct: 89 KRPPVIRTHVRDMVILPEMVGLTIAVYNGKEFIPVKIVPEMIGHYLGEFSPTTRIVQHGE 148
Query: 118 PGIGATRSSMFVAVK 132
PG+ ATRSS+ VA K
Sbjct: 149 PGLKATRSSLHVASK 163
>gi|11499505 SSU ribosomal protein S19P (rps19P) [Archaeoglobus fulgidus]
>gi|6226087|sp|O28358|RS19_ARCFU 30S RIBOSOMAL PROTEIN
S19P >gi|7440521|pir||H69489 SSU ribosomal protein S19P
(rps19P) homolog - Archaeoglobus fulgidus
>gi|2648642|gb|AAB89353.1| (AE000971) SSU ribosomal
protein S19P (rps19P) [Archaeoglobus fulgidus]
Length = 133
Score = 175 bits (438), Expect = 3e-43
Identities = 86/129 (66%), Positives = 104/129 (79%), Gaps = 6/129 (4%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYNKPI 63
++F+YRGYTLE+L M LEELAKLLPAR+RR +KRG T +++KLLRK+R KKG
Sbjct: 11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKLR--KKGT----A 64
Query: 64 RTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGAT 123
RTHCRDM+VLPEMVG ++VHNGKEFV VEIKPEMIGH LGEFA TR+ +H PG+GAT
Sbjct: 65 RTHCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPGVGAT 124
Query: 124 RSSMFVAVK 132
RSS +V +K
Sbjct: 125 RSSKYVPLK 133
>sp|Q9UXA3|RS19_SULSO 30S RIBOSOMAL PROTEIN S19P >gi|6015762|emb|CAB57589.1| (Y18930)
ribosomal protein S19 (HMAS19) [Sulfolobus solfataricus]
Length = 140
Score = 163 bits (408), Expect = 8e-40
Identities = 73/130 (56%), Positives = 105/130 (80%), Gaps = 1/130 (0%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIR-LAKKGKYNKP 62
K F+YRG ++++L+NM ++E KLLP+RQRRSLKRG T Q+ LL K+R ++GK+NK
Sbjct: 10 KNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRREGKFNKT 69
Query: 63 IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGA 122
I+TH R++++LPE++GL + V+NGKEFV + PEMIGHYLGE++ T K+V+HG PG+ A
Sbjct: 70 IKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKA 129
Query: 123 TRSSMFVAVK 132
TRSS+F+A+K
Sbjct: 130 TRSSLFLAMK 139
>gb|AAK41014.1| SSU ribosomal protein S19AB (rps19AB) [Sulfolobus solfataricus]
Length = 140
Score = 163 bits (408), Expect = 8e-40
Identities = 73/130 (56%), Positives = 105/130 (80%), Gaps = 1/130 (0%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIR-LAKKGKYNKP 62
K F+YRG ++++L+NM ++E KLLP+RQRRSLKRG T Q+ LL K+R ++GK+NK
Sbjct: 10 KNFKYRGKSIDELLNMPMDEFIKLLPSRQRRSLKRGFTDAQRHLLEKVRKYRREGKFNKT 69
Query: 63 IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGA 122
I+TH R++++LPE++GL + V+NGKEFV + PEMIGHYLGE++ T K+V+HG PG+ A
Sbjct: 70 IKTHVRNLVILPELIGLKMAVYNGKEFVEFTVTPEMIGHYLGEYSITTKKVEHGEPGLKA 129
Query: 123 TRSSMFVAVK 132
TRSS+F+A+K
Sbjct: 130 TRSSLFLAMK 139
>sp|P20284|RS19_HALMA 30S RIBOSOMAL PROTEIN S19 (HMAS19) (HS18) >gi|81007|pir||G35063
ribosomal protein S19 - Haloarcula marismortui
>gi|11383629|pir||R3HS19 ribosomal protein S19
[similarity] - Haloarcula marismortui
>gi|148805|gb|AAA86863.1| (J05222) ribosomal protein S19
[Haloarcula marismortui]
Length = 140
Score = 159 bits (397), Expect = 2e-38
Identities = 80/129 (62%), Positives = 100/129 (77%), Gaps = 1/129 (0%)
Query: 5 EFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLA-KKGKYNKPI 63
EF +RG+TL++L M LEE+A+LLPARQRRS+ RGLT E+ KLL K R A ++ N PI
Sbjct: 12 EFSFRGHTLDELQEMELEEVAELLPARQRRSIVRGLTEEKHKLLEKAREAGEEETANDPI 71
Query: 64 RTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGAT 123
RTH RDM V+PEMVGLT+ VH+G+ F V+++PEM+GHYLGEF TR V+HG GIGAT
Sbjct: 72 RTHLRDMPVVPEMVGLTLAVHDGQNFERVKVEPEMLGHYLGEFQLTRSSVEHGQAGIGAT 131
Query: 124 RSSMFVAVK 132
RSS FV +K
Sbjct: 132 RSSKFVPLK 140
>sp|P15010|RS19_HALHA 30S RIBOSOMAL PROTEIN S19 (HHAS19) >gi|11383631|pir||R3HS9H
ribosomal protein S19 [similarity] - Halobacterium
salinarum >gi|2425180|dbj|BAA22274.1| (AB006961)
ribosomal protein S19 [Halobacterium halobium]
>gi|10581163|gb|AAG19940.1| (AE005077) 30S ribosomal
protein S19P; Rps19p [Halobacterium sp. NRC-1]
Length = 140
Score = 151 bits (377), Expect = 4e-36
Identities = 77/129 (59%), Positives = 96/129 (73%), Gaps = 1/129 (0%)
Query: 5 EFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLA-KKGKYNKPI 63
EF YRG+ L++L MSLE++A+LLPARQRR++ RGL+ E K+L + R + + N PI
Sbjct: 12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANNPI 71
Query: 64 RTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGAT 123
RTH RDM VLPE VGLT V+ G+EF VE++PEMIGHYLGEF TR V+HG GIGAT
Sbjct: 72 RTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGAT 131
Query: 124 RSSMFVAVK 132
RSS FV +K
Sbjct: 132 RSSKFVPLK 140
>sp|P20342|RS15_XENLA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) >gi|85845|pir||C34823
ribosomal protein S15 - African clawed frog
>gi|214737|gb|AAA49946.1| (M33332) insulinoma protein
(rig) [Xenopus laevis]
Length = 145
Score = 147 bits (368), Expect = 4e-35
Identities = 78/133 (58%), Positives = 97/133 (72%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
K+F YRG L+QL++MS E++ +L ARQRR L RGL +Q LL+++R AKK K
Sbjct: 13 KKFTYRGVDLDQLLDMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEK 72
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P I+TH RDMI+LPEMVG + V+NGK F VEIKPEMIGHYLGEF+ T K V+HG PG
Sbjct: 73 PEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 133 IGATHSSRFIPLK 145
>gi|4506687 ribosomal protein S15 [Homo sapiens] >gi|6677799|ref|NP_033117.1|
ribosomal protein S15; rat insulinoma gene [Mus
musculus] >gi|8394212|ref|NP_058847.1| ribosomal protein
S15 [Rattus norvegicus] >gi|11426273|ref|XP_009250.1|
ribosomal protein S15 [Homo sapiens]
>gi|133796|sp|P11174|RS15_HUMAN 40S RIBOSOMAL PROTEIN
S15 (RIG PROTEIN) >gi|71034|pir||R3HU15 ribosomal
protein S15, cytosolic - human >gi|71035|pir||R3RT15
ribosomal protein S15, cytosolic [validated] - rat
>gi|71036|pir||R3HY15 ribosomal protein S15 - golden
hamster >gi|86430|pir||B34823 ribosomal protein S15 -
chicken >gi|91274|pir||A34823 ribosomal protein S15 -
mouse >gi|200751|gb|AAA40055.1| (M33330) insulinoma
protein (rig) [Mus musculus] >gi|206664|gb|AAA42044.1|
(M19393) DNA-binding protein (putative); putative
[Rattus norvegicus] >gi|212634|gb|AAA49057.1| (M33331)
insulinoma protein (rig) [Gallus gallus]
>gi|220899|dbj|BAA01984.1| (D11388) ribosomal protein
S15 [Rattus norvegicus] >gi|222860|dbj|BAA01036.1|
(D10167) ribosomal protein S15 [Gallus gallus]
>gi|305361|gb|AAA37094.1| (J02983) Rig DNA-binding
protein (putative); putative [Mesocricetus auratus]
>gi|306898|gb|AAA36036.1| (J02984) rig-analog protein
(putative); putative [Homo sapiens]
>gi|337416|gb|AAA36568.1| (M32405) human homologue of
rat insulinoma gene (rig); putative [Homo sapiens]
>gi|2258091|dbj|BAA21510.1| (AB005624) rig-analog
DNA-binding protein [Sus scrofa]
Length = 145
Score = 147 bits (368), Expect = 4e-35
Identities = 77/133 (57%), Positives = 97/133 (72%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
++F YRG L+QL++MS E+L +L ARQRR L RGL +Q LL+++R AKK K
Sbjct: 13 RKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEK 72
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH RDMI+LPEMVG + V+NGK F VEIKPEMIGHYLGEF+ T K V+HG PG
Sbjct: 73 PEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 132
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 133 IGATHSSRFIPLK 145
>gb|AAB24655.1| Rig homolog [human, brain, Peptide Partial, 135 aa]
Length = 135
Score = 147 bits (368), Expect = 4e-35
Identities = 77/133 (57%), Positives = 97/133 (72%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
++F YRG L+QL++MS E+L +L ARQRR L RGL +Q LL+++R AKK K
Sbjct: 3 RKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEK 62
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH RDMI+LPEMVG + V+NGK F VEIKPEMIGHYLGEF+ T K V+HG PG
Sbjct: 63 PEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPG 122
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 123 IGATHSSRFIPLK 135
>gb|AAD16877.1| (AF104059) ribosomal protein S15 [Salmo salar]
Length = 145
Score = 145 bits (362), Expect = 2e-34
Identities = 75/133 (56%), Positives = 97/133 (72%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
++F YRG L+QL++MS E+L +L ARQRR L RGL +Q+ LL+++R AKK K
Sbjct: 13 RKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKQQSLLKRLRKAKKEAPPMEK 72
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH RDM++LPEMVG + V+NGK F VEIKPEM GHYLGEF+ T K V+HG PG
Sbjct: 73 PEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPG 132
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 133 IGATHSSRFIPLK 145
>emb|CAC12391.1| (AL445067) probable 30S ribosomal protein S19 [Thermoplasma
acidophilum]
Length = 151
Score = 142 bits (355), Expect = 1e-33
Identities = 70/129 (54%), Positives = 90/129 (69%), Gaps = 5/129 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYNKPI 63
KEF Y+GY+LE L MS+EEL K+LPAR RR+L R EQKKL+ K+ ++ +
Sbjct: 28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLESDEED-----V 82
Query: 64 RTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGAT 123
+TH RD+I+LP VG + V+NG + EIKPEMIGHYLGEF TRK V+H PG+GAT
Sbjct: 83 KTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGAT 142
Query: 124 RSSMFVAVK 132
RSS F+ +K
Sbjct: 143 RSSKFMPLK 151
>gb|AAC32121.1| (AF051217) probable 40S ribosomal protein S15 [Picea mariana]
Length = 151
Score = 141 bits (351), Expect = 4e-33
Identities = 71/133 (53%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
K+F YRG L+ L++M+ EEL KL AR RR +RGL + L++K+R AK+ G+
Sbjct: 19 KKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEK 78
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+P+RTH R+MI++PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 79 PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 138
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 139 IGATHSSRFIPLK 151
>sp|P70066|RS15_XIPMA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) >gi|1669853|gb|AAB18956.1|
(U65408) ribosomal protein S15 [Xiphophorus maculatus]
Length = 145
Score = 140 bits (350), Expect = 5e-33
Identities = 73/133 (54%), Positives = 95/133 (70%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
++F YRG L+QL++MS E+L +L ARQRR L RGL + + LL+++ AKK K
Sbjct: 13 RKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEK 72
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH RDM++LPEMVG + V+NGK F VEIKPEM GHYLGEF+ T K V+HG PG
Sbjct: 73 PEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPG 132
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 133 IGATHSSRFIPLK 145
>pir||T21828 hypothetical protein F36A2.6 - Caenorhabditis elegans
>gi|3876773|emb|CAB03065.1| (Z81077) predicted using
Genefinder~Similarity to Human 40S ribosomal protein
S15, contains similarity to Pfam domain: PF00203
(Ribosomal protein S19), Score=121.6, E-value=7e-35,
N=1~cDNA EST yk90h2.3 comes from this gene~cDNA EST
yk103h2.3 comes from>
Length = 151
Score = 139 bits (347), Expect = 1e-32
Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK--GKYNK 61
++F YRG L+QL++MS E+ KLLP R RR L RGL + L+ K++ AKK G K
Sbjct: 19 RKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEK 78
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH RDMI+LPE+VG I ++NGK F EIKPEMIG YLGEFA + K V+HG PG
Sbjct: 79 PATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPG 138
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 139 IGATHSSRFIPLK 151
>pir||S71259 ribosomal protein S15, cytosolic - Arabidopsis thaliana
>gi|1107485|emb|CAA63028.1| (X91962) 40S ribosomal
protein S15 [Arabidopsis thaliana]
Length = 152
Score = 138 bits (344), Expect = 3e-32
Identities = 68/133 (51%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
K+F ++G L+ L++MS ++L KL +R RR RGLT + L++K+R AK+ G+
Sbjct: 20 KKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEK 79
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+P+RTH R+MI+LPEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 80 PEPVRTHLRNMIILPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 139
Query: 120 IGATRSSMFVAVK 132
+GAT SS F+ +K
Sbjct: 140 VGATHSSRFIPLK 152
>sp|Q08112|RS15_ARATH 40S RIBOSOMAL PROTEIN S15 >gi|629556|pir||S43412 ribosomal protein
S15 - Arabidopsis thaliana >gi|313152|emb|CAA80679.1|
(Z23161) ribosomal protein S15 [Arabidopsis thaliana]
>gi|313188|emb|CAA80681.1| (Z23162) ribosomal protein
S15 [Arabidopsis thaliana] >gi|1903366|gb|AAB70449.1|
(AC000104) Strong similarity to Oryza 40S ribosomal
protein S15. ESTs gb|R29788,gb|ATTS0365 come from this
gene. [Arabidopsis thaliana]
Length = 152
Score = 137 bits (341), Expect = 6e-32
Identities = 67/133 (50%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
K+F ++G L+ L++MS ++L KL +R RR RGLT + L++K+R AK+ G+
Sbjct: 20 KKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEK 79
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+P+RTH R+MI++PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 80 PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 139
Query: 120 IGATRSSMFVAVK 132
+GAT SS F+ +K
Sbjct: 140 VGATHSSRFIPLK 152
>emb|CAC05477.1| (AL391712) ribosomal protein S15-like [Arabidopsis thaliana]
Length = 152
Score = 137 bits (341), Expect = 6e-32
Identities = 67/133 (50%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
K+F ++G L+ L++MS ++L KL +R RR RGLT + L++K+R AK+ G+
Sbjct: 20 KKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEK 79
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+P+RTH R+MI++PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 80 PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 139
Query: 120 IGATRSSMFVAVK 132
+GAT SS F+ +K
Sbjct: 140 VGATHSSRFIPLK 152
>emb|CAC05476.1| (AL391712) ribosomal protein S15-like [Arabidopsis thaliana]
Length = 150
Score = 136 bits (340), Expect = 8e-32
Identities = 68/133 (51%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAK----KGKY 59
K+F +RG L+ L++MS ++L KL P+R RR RGLT + L++K+R AK G+
Sbjct: 18 KKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEK 77
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+RTH R+MI++PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 78 PAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 137
Query: 120 IGATRSSMFVAVK 132
+GAT SS F+ +K
Sbjct: 138 VGATNSSRFIPLK 150
>pir||T37489 40s ribosomal protein s15 - fission yeast (Schizosaccharomyces
pombe) >gi|6179664|emb|CAB59883.1| (AL132769) 40s
ribosomal protein s15 [Schizosaccharomyces pombe]
Length = 154
Score = 136 bits (339), Expect = 1e-31
Identities = 70/133 (52%), Positives = 91/133 (67%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
+ F YRG LEQL+++S E+L L AR RR + RGL P + +RK+R AK K
Sbjct: 22 RTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEK 81
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH R+MI+LPEMVG + ++NGK F VEI+PEMIGHYLGEF+ T K +HG PG
Sbjct: 82 PATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPG 141
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 142 IGATHSSRFIPLK 154
>pir||T40951 40s ribosomal protein s15 - fission yeast (Schizosaccharomyces
pombe) >gi|4468722|emb|CAB38159.1| (AL035592) 40s
ribosomal protein s15 [Schizosaccharomyces pombe]
Length = 153
Score = 136 bits (338), Expect = 1e-31
Identities = 70/133 (52%), Positives = 91/133 (67%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
+ F YRG LEQL+++S E+L L AR RR + RGL P + +RK+R AK K
Sbjct: 21 RTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEK 80
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH R+MI+LPEMVG + ++NGK F VEI+PEMIGHYLGEF+ T K +HG PG
Sbjct: 81 PATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPG 140
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 141 IGATHSSRFIPLK 153
>emb|CAA33091.1| (X14967) ribosomal protein S19 (AA 1-115) [Halobacterium halobium]
>gi|226309|prf||1506338A ribosomal protein S19
[Halobacterium halobium]
Length = 115
Score = 135 bits (336), Expect = 2e-31
Identities = 70/115 (60%), Positives = 86/115 (73%), Gaps = 1/115 (0%)
Query: 19 MSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLA-KKGKYNKPIRTHCRDMIVLPEMV 77
MSLE++A+LLPARQRR++ RGL+ E K+L + R + + N PIRTH RDM VLPE V
Sbjct: 1 MSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANNPIRTHLRDMPVLPEFV 60
Query: 78 GLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132
GLT V+ G+EF VE++PEMIGHYLGEF TR V+HG GIGATRSS FV +K
Sbjct: 61 GLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 115
>gb|AAF57984.1| (AE003806) CG8332 gene product [Drosophila melanogaster]
Length = 148
Score = 135 bits (336), Expect = 2e-31
Identities = 70/133 (52%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGK--YNK 61
K+F YRG L+QL++M +L +L+ +R RR RGL + L++K+R AKK K
Sbjct: 16 KKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEAPPNEK 75
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH R+MI++PEM G I V+NGK+F VE+KPEMIGHYLGEFA T K V+HG PG
Sbjct: 76 PEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPG 135
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 136 IGATHSSRFIPLK 148
>dbj|BAB11627.1| (AB016875) 40S ribosomal protein S15 [Arabidopsis thaliana]
Length = 149
Score = 132 bits (330), Expect = 1e-30
Identities = 67/133 (50%), Positives = 92/133 (68%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
K+F +RG L+ L++MS+E+L K +R RR RGLT + L++K+R AK G+
Sbjct: 17 KKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEK 76
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+RTH R+MI++PEM+G I V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 77 PASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 136
Query: 120 IGATRSSMFVAVK 132
+GAT SS F+ +K
Sbjct: 137 VGATNSSRFIPLK 149
>emb|CAC05475.1| (AL391712) ribosomal protein S15-like [Arabidopsis thaliana]
Length = 152
Score = 131 bits (327), Expect = 3e-30
Identities = 64/133 (48%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAK----KGKY 59
K+F ++G L+ L++M ++L +L P+R RR + RGLT + L++K+R AK G+
Sbjct: 20 KKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEK 79
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+ +RTH R+M+++PEM+G I V+NGK F +EIKPEMIGHYL EF+ T K V+HG PG
Sbjct: 80 PEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPG 139
Query: 120 IGATRSSMFVAVK 132
GAT SS F+ +K
Sbjct: 140 HGATHSSRFIPLK 152
>sp|P34737|RS15_PODAN 40S RIBOSOMAL PROTEIN S15 (S12) >gi|1078669|pir||A53793 ribosomal
protein S12, cytosolic - Podospora anserina
>gi|401841|emb|CAA80805.1| (Z23267) cytoplasmic
ribosomal protein S12 [Podospora anserina]
Length = 152
Score = 131 bits (326), Expect = 3e-30
Identities = 67/133 (50%), Positives = 96/133 (71%), Gaps = 4/133 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK-GKYN-K 61
++F YRG L+ L++++ +EL ++ AR RR + RGL L++K+R AK+ K N K
Sbjct: 20 RKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEK 79
Query: 62 P--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P ++TH RDMIV+PEM+G + +++GKEF VEIKPEM+GHYLGEF+ + K V+HG PG
Sbjct: 80 PDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPG 139
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 140 IGATHSSRFIPLK 152
>sp|P31674|RS15_ORYSA 40S RIBOSOMAL PROTEIN S15 >gi|7440527|pir||T03388 probable
ribosomal protein S15 - rice >gi|218131|dbj|BAA01746.1|
(D10962) unnamed protein product [Oryza sativa]
Length = 152
Score = 121 bits (301), Expect = 3e-27
Identities = 64/133 (48%), Positives = 91/133 (68%), Gaps = 6/133 (4%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKG----KY 59
+++ YRG LE L++MS ++L +L PAR RR +RGL + ++ +KG +
Sbjct: 22 RKYSYRGVDLE-LLDMSTDDLVQLFPARARRRFQRGLK-RKPMAHQEAAQGEKGCPCWRE 79
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
+P+RTH R+MI++PEM+G + V+NGK F VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 80 AEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 139
Query: 120 IGATRSSMFVAVK 132
IGAT SS F+ +K
Sbjct: 140 IGATHSSRFIPLK 152
>gi|6324533 40S ribosomal protein S15 (S21) (rp52) (RIG protein); Rps15p
[Saccharomyces cerevisiae]
>gi|266966|sp|Q01855|RS15_YEAST 40S RIBOSOMAL PROTEIN
S15 (S21) (YS21) (RP52) (RIG PROTEIN)
>gi|322958|pir||S24053 ribosomal protein S15.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|218478|dbj|BAA01983.1| (D11387) ribosomal protein
S21 [Saccharomyces cerevisiae]
>gi|218480|dbj|BAA01982.1| (D11386) ribosomal protein
S21 [Saccharomyces cerevisiae]
>gi|1419837|emb|CAA99042.1| (Z74782) ORF YOL040c
[Saccharomyces cerevisiae]
Length = 142
Score = 118 bits (292), Expect = 3e-26
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAK----KGKY 59
K YRG LE+L+ MS E+ KL PAR RR RG+T + ++K+R AK + +
Sbjct: 13 KTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEK 72
Query: 60 NKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPG 119
P+RTH R+MI++PEM+G + ++NGK F VEI+PEM+GHYLGEF+ T V+HG G
Sbjct: 73 PAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG 132
Query: 120 IGATR 124
+R
Sbjct: 133 ATTSR 137
>gb|AAB47433.1| (L34568) surface antigen [Cryptosporidium parvum]
Length = 123
Score = 117 bits (291), Expect = 4e-26
Identities = 61/123 (49%), Positives = 84/123 (67%), Gaps = 5/123 (4%)
Query: 15 QLMNMSLEELAKLLPARQRRSLKRG-LTPEQKKLLRKIRLAKK----GKYNKPIRTHCRD 69
+L+ M L+E+ +LLPAR+RR + RG L + K+R +K G+ +RTH R+
Sbjct: 1 KLLTMKLDEVVELLPARKRRKIARGCLNRRTAAFIAKLRKSKAECPMGEKPVAVRTHLRN 60
Query: 70 MIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFV 129
M++LPEMVG V+NGK +V VEIKPEMIG YLGEF+ T K V+HG PG+G+T SS F+
Sbjct: 61 MVILPEMVGSVAGVYNGKTYVTVEIKPEMIGMYLGEFSITYKPVRHGKPGVGSTSSSRFI 120
Query: 130 AVK 132
+K
Sbjct: 121 PLK 123
>dbj|BAB10549.1| (AB008265) 40S ribosomal protein S15-like protein [Arabidopsis
thaliana]
Length = 160
Score = 112 bits (278), Expect = 1e-24
Identities = 62/139 (44%), Positives = 89/139 (63%), Gaps = 10/139 (7%)
Query: 4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYN--- 60
K+F +RG+ ++ L+ MS +LAKL AR RR RGL + L++K+R AKK +
Sbjct: 22 KKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENK 81
Query: 61 -KP--IRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGA 117
KP ++TH R+MI++PEM+G + VHNGK+F + IKPEMIGHYL EF+ T K+V H
Sbjct: 82 MKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHR 141
Query: 118 PGIGA----TRSSMFVAVK 132
P I RS+ F+ ++
Sbjct: 142 PRICGCCCFRRSTRFIPLR 160
>emb|CAB63846.1| (AJ251916) ribosomal protein S15 [Pisum sativum]
Length = 87
Score = 102 bits (253), Expect = 1e-21
Identities = 50/87 (57%), Positives = 64/87 (73%)
Query: 46 KLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGE 105
KL + R A G+ +P+RTH R+MI++PEM+G I V+NGK F VEIKPEMIGHYL E
Sbjct: 1 KLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAE 60
Query: 106 FAPTRKRVQHGAPGIGATRSSMFVAVK 132
F+ + K V+HG PGIGAT SS F+ +K
Sbjct: 61 FSISYKPVKHGRPGIGATHSSRFIPLK 87
>sp|P51429|RS15_NAEGR 40S RIBOSOMAL PROTEIN S15 >gi|695385|gb|AAA62841.1| (L39935)
ribosomal protein S15 [Naegleria gruberi]
Length = 120
Score = 98.3 bits (241), Expect = 3e-20
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
Query: 17 MNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIR----LAKKGKYNKPIRTHCRDMIV 72
M M +EL L + RR + +G++ + K L+ K + A G+ ++TH RDMI+
Sbjct: 1 MAMENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMII 60
Query: 73 LPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132
LP M+G I V+ GK++V VEIKPEM+G L +F+ T + V+HG P IGAT SS FV +K
Sbjct: 61 LPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKPSIGATSSSGFVPLK 120
>sp|P44385|RS19_HAEIN 30S RIBOSOMAL PROTEIN S19 >gi|1075269|pir||I64092 ribosomal protein
S19 - Haemophilus influenzae (strain Rd KW20)
>gi|1573791|gb|AAC22440.1| (U32761) ribosomal protein
S19 (rpS19) [Haemophilus influenzae Rd]
>gi|1841326|dbj|BAA10951.1| (D64071) ribosomal protein
S19 [Actinobacillus actinomycetemcomitans]
Length = 91
Score = 79.6 bits (193), Expect = 1e-14
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ A + KPI+T R +++P M+GLTI VHNG++ VPV
Sbjct: 3 RSLKKGPFLDLH-LLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVY 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ EMIGH LGEFAPTR H A
Sbjct: 62 VSDEMIGHKLGEFAPTRTYRGHAA 85
>pir||B82059 ribosomal protein S19 VC2592 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9657179|gb|AAF95733.1| (AE004326)
ribosomal protein S19 [Vibrio cholerae]
Length = 92
Score = 78.4 bits (190), Expect = 3e-14
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ A + KPI+T R +++P M+GLTI VHNG++ VPV
Sbjct: 3 RSLKKGPFIDLH-LLKKVEKAVESGDKKPIKTWSRRSMIIPTMIGLTIAVHNGRQHVPVF 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ EMIGH LGEFAPTR H A
Sbjct: 62 VTDEMIGHKLGEFAPTRTYRGHAA 85
>sp|P02375|RS19_ECOLI 30S RIBOSOMAL PROTEIN S19 >gi|71022|pir||R3EC19 ribosomal protein
S19 [validated] - Escherichia coli
>gi|42830|emb|CAA26464.1| (X02613) ribosomal protein S19
(rpsS) (aa 1-273) [Escherichia coli]
>gi|606250|gb|AAA58113.1| (U18997) 30S ribosomal subunit
protein S19 [Escherichia coli]
>gi|1789712|gb|AAC76341.1| (AE000408) 30S ribosomal
subunit protein S19 [Escherichia coli K12]
Length = 92
Score = 77.3 bits (187), Expect = 7e-14
Identities = 41/84 (48%), Positives = 53/84 (62%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ A + KP+RT R + P M+GLTI VHNG++ VPV
Sbjct: 3 RSLKKGPFIDLH-LLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ EM+GH LGEFAPTR H A
Sbjct: 62 VTDEMVGHKLGEFAPTRTYRGHAA 85
>pir||C81268 30S ribosomal protein S19 Cj1703c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969118|emb|CAB73689.1|
(AL139079) 30S ribosomal protein S19 [Campylobacter
jejuni]
Length = 93
Score = 76.9 bits (186), Expect = 9e-14
Identities = 39/77 (50%), Positives = 51/77 (65%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + +++K+ AKK NKPI+T R + P+M+GLT VHNGK F+PV
Sbjct: 3 RSLKKGPFVDDH-VMKKVIAAKKANDNKPIKTWSRRSTITPDMIGLTFNVHNGKSFIPVY 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I IG+ LGEFAPTR
Sbjct: 62 ITENHIGYKLGEFAPTR 78
>pir||A83116 30S ribosomal protein S19 PA4259 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950476|gb|AAG07647.1|AE004841_25 (AE004841) 30S
ribosomal protein S19 [Pseudomonas aeruginosa]
Length = 91
Score = 76.9 bits (186), Expect = 9e-14
Identities = 41/84 (48%), Positives = 55/84 (64%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ +A + KPI+T R ++LP MVGLTI VHNG++ VPV
Sbjct: 3 RSLKKGPFIDLH-LLKKVEVAVEKNDRKPIKTWSRRSMILPHMVGLTIAVHNGRQHVPVL 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ +M+GH LGEFA TR H A
Sbjct: 62 VNEDMVGHKLGEFAATRTYRGHAA 85
>gi|6324365 protein of the small subunit of the mitochondrial ribosome; Rsm19p
[Saccharomyces cerevisiae]
>gi|1730677|sp|P53733|YN8L_YEAST PUTATIVE 40S RIBOSOMAL
PROTEIN YNR037C >gi|2133052|pir||S63368 probable
ribosomal protein S19, mitochondrial - yeast
(Saccharomyces cerevisiae) >gi|1302539|emb|CAA96317.1|
(Z71652) ORF YNR037c [Saccharomyces cerevisiae]
Length = 91
Score = 76.1 bits (184), Expect = 2e-13
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 62 PIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQH 115
PIRT+ R +LP+ VGL +HNGKE+VP+EI +M+GH LGEFAPTRKR +
Sbjct: 32 PIRTNARAATILPQFVGLKFQIHNGKEYVPIEISEDMVGHKLGEFAPTRKRFSY 85
>sp|Q9ZJR7|RS19_HELPJ 30S RIBOSOMAL PROTEIN S19 >gi|7440526|pir||C71835 ribosomal protein
S19 - Helicobacter pylori (strain J99)
>gi|4155812|gb|AAD06786.1| (AE001547) 30S RIBOSOMAL
PROTEIN S19 [Helicobacter pylori J99]
Length = 93
Score = 76.1 bits (184), Expect = 2e-13
Identities = 39/77 (50%), Positives = 52/77 (66%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS+K+G + L++K AK+GK N+PI+T R +LPEM+G T VHNG+ FVPV
Sbjct: 3 RSIKKGPFIDDH-LMKKTLKAKEGKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVFVPVY 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I +G+ LGEFAPTR
Sbjct: 62 ITENHVGYKLGEFAPTR 78
>sp|P56026|RS19_HELPY 30S RIBOSOMAL PROTEIN S19 >gi|7440517|pir||C64684 ribosomal protein
S19 - Helicobacter pylori (strain 26695)
>gi|2314477|gb|AAD08354.1| (AE000633) ribosomal protein
S19 (rps19) [Helicobacter pylori 26695]
Length = 93
Score = 75.7 bits (183), Expect = 2e-13
Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS+K+G + L++K AK+GK N+PI+T R +LPEM+G T VHNG+ F+PV
Sbjct: 3 RSIKKGPFIDDH-LMKKTLKAKEGKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVFIPVY 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I +G+ LGEFAPTR
Sbjct: 62 ITENHVGYKLGEFAPTR 78
>pir||D82915 ribosomal protein S19 UU235 [imported] - Ureaplasma urealyticum
>gi|6899205|gb|AAF30644.1|AE002122_13 (AE002122)
ribosomal protein S19 [Ureaplasma urealyticum]
Length = 88
Score = 73.7 bits (178), Expect = 8e-13
Identities = 39/82 (47%), Positives = 48/82 (57%), Gaps = 1/82 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ A KPI+T R + P VGLT VHNGK F+ V
Sbjct: 3 RSLKKGAYADPS-LLKKVEAANASVSKKPIKTWSRRSQIFPNFVGLTFEVHNGKTFLKVY 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQH 115
+ +MIGH LGEFAPTR H
Sbjct: 62 VTEDMIGHKLGEFAPTRNFKNH 83
>pir||C75534 ribosomal protein S19 - Deinococcus radiodurans (strain R1)
>gi|6457989|gb|AAF09896.1|AE001892_7 (AE001892)
ribosomal protein S19 [Deinococcus radiodurans]
Length = 95
Score = 73.4 bits (177), Expect = 1e-12
Identities = 40/84 (47%), Positives = 53/84 (62%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G E LL+K+ K + I+T R ++PEM+G TI V+NGK+ VPV
Sbjct: 3 RSLKKGPFVEDH-LLKKVDAQNDKKDKRVIKTWSRRSTIVPEMIGHTIAVYNGKQHVPVF 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ +MIGH LGEF+PTR HGA
Sbjct: 62 VNEQMIGHKLGEFSPTRTYRGHGA 85
>sp|P80381|RS19_THETH 30S RIBOSOMAL PROTEIN S19 >gi|10120582|pdb|1FKA|S Chain S,
Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution >gi|10835581|pdb|1FJF|S
Chain S, Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit >gi|10835603|pdb|1FJG|S Chain S,
Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
>gi|2578816|emb|CAA58878.1| (X84059) ribosomal protein
S19 [Thermus thermophilus]
Length = 93
Score = 73.0 bits (176), Expect = 1e-12
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G+ + L + + L KG+ + I+T R ++PEMVG TI V+NGK+ VPV
Sbjct: 3 RSLKKGVFVDDHLLEKVLELNAKGE-KRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHG 116
I M+GH LGEFAPTR HG
Sbjct: 62 ITENMVGHKLGEFAPTRTYRGHG 84
>pdb|1QKF|A Chain A, Solution Structure Of The Ribosomal Protein S19 From
Thermus Thermophilus >gi|5822310|pdb|1QKH|A Chain A,
Solution Structure Of The Ribosomal Protein S19 From
Thermus Thermophilus
Length = 92
Score = 73.0 bits (176), Expect = 1e-12
Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G+ + L + + L KG+ + I+T R ++PEMVG TI V+NGK+ VPV
Sbjct: 2 RSLKKGVFVDDHLLEKVLELNAKGE-KRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60
Query: 94 IKPEMIGHYLGEFAPTRKRVQHG 116
I M+GH LGEFAPTR HG
Sbjct: 61 ITENMVGHKLGEFAPTRTYRGHG 83
>sp|P47401|RS19_MYCGE 30S RIBOSOMAL PROTEIN S19 >gi|1361831|pir||B64217 ribosomal protein
S19 - Mycoplasma genitalium >gi|3844749|gb|AAC71373.1|
(U39696) ribosomal protein S19 (rpS19) [Mycoplasma
genitalium]
Length = 87
Score = 71.8 bits (173), Expect = 3e-12
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS K+G + L + I + K+ K KPI+T R + PE VG T VHNGK F+ V
Sbjct: 3 RSSKKGAFVDAHLLKKVIEMNKQAK-KKPIKTWSRRSTIFPEFVGNTFSVHNGKTFINVY 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ +M+GH LGEF+PTR QH A
Sbjct: 62 VTDDMVGHKLGEFSPTRNFKQHTA 85
>sp|Q9ZI46|RS19_AQUPY 30S RIBOSOMAL PROTEIN S19 >gi|4165869|gb|AAD08789.1| (AF040100)
ribosomal protein S19 [Aquifex pyrophilus]
Length = 219
Score = 71.4 bits (172), Expect = 4e-12
Identities = 34/65 (52%), Positives = 43/65 (65%)
Query: 46 KLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGE 105
KL +IR + K +RT+ R ++PE VG TI VHNGK F+PV I +M+GH LGE
Sbjct: 139 KLWMRIRKMNEAGERKVVRTYSRATTIIPEFVGHTIAVHNGKTFIPVYITQDMVGHKLGE 198
Query: 106 FAPTR 110
FAPTR
Sbjct: 199 FAPTR 203
>sp|P10132|RS19_MYCCA 30S RIBOSOMAL PROTEIN S19 >gi|71023|pir||R3YM19 ribosomal protein
S19 - Mycoplasma capricolum >gi|44213|emb|CAA29708.1|
(X06414) ribosomal protein S19 (AA 1-88) [Mycoplasma
capricolum]
Length = 88
Score = 71.0 bits (171), Expect = 5e-12
Identities = 39/83 (46%), Positives = 53/83 (62%), Gaps = 4/83 (4%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G ++ L +K+ AK G+ I+T R + PE +G T V+NGKEF+PV
Sbjct: 3 RSLKKGPFVDEN-LFKKVTSAKDGEV---IKTWSRRSTIFPEFIGKTFGVYNGKEFIPVY 58
Query: 94 IKPEMIGHYLGEFAPTRKRVQHG 116
I +M+G+ LGEFAPTRK HG
Sbjct: 59 ITEDMVGNKLGEFAPTRKFGGHG 81
>sp|Q9XD32|RS19_LEPIN 30S RIBOSOMAL PROTEIN S19 >gi|5163208|gb|AAD40587.1|AF115283_6
(AF115283) ribosomal protein S19 [Leptospira
interrogans]
Length = 93
Score = 71.0 bits (171), Expect = 5e-12
Identities = 36/77 (46%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS+K+G + L++KI KP +T R + P+MVG T+ VHNGK+F PV
Sbjct: 3 RSVKKGPFIDDH-LMKKITKLNSENQKKPFKTWSRRSTIFPDMVGHTVMVHNGKQFTPVY 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I MIGH LGEF+PTR
Sbjct: 62 INENMIGHKLGEFSPTR 78
>sp|P38520|RS19_THEMA 30S RIBOSOMAL PROTEIN S19 >gi|7440519|pir||H72249 ribosomal protein
S19 - Thermotoga maritima (strain MSB8)
>gi|4982060|gb|AAD36562.1|AE001798_27 (AE001798)
ribosomal protein S19 [Thermotoga maritima]
Length = 95
Score = 70.6 bits (170), Expect = 7e-12
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS K+G + +KLL KIR + K I+T R +++PEMVG TI V+NG + +PV
Sbjct: 3 RSRKKGPYVD-RKLLEKIRKLNETGEKKVIKTWSRASMIIPEMVGHTIAVYNGMKHIPVY 61
Query: 94 IKPEMIGHYLGEFAPTRK 111
I MIGH LGEFAPTR+
Sbjct: 62 ITENMIGHRLGEFAPTRR 79
>pir||H70300 ribosomal protein S19 - Aquifex aeolicus >gi|2982775|gb|AAC06401.1|
(AE000669) ribosomal protein S19 [Aquifex aeolicus]
Length = 186
Score = 70.2 bits (169), Expect = 9e-12
Identities = 35/65 (53%), Positives = 43/65 (65%)
Query: 46 KLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGE 105
KL +IR + K +RT+ R ++PE VG TI VHNGK FVPV I +M+GH LGE
Sbjct: 106 KLWVRIRKMNETGERKVVRTYSRATTIIPEFVGHTIAVHNGKTFVPVYITQDMVGHKLGE 165
Query: 106 FAPTR 110
FAPTR
Sbjct: 166 FAPTR 170
>sp|O83223|RS19_TREPA 30S RIBOSOMAL PROTEIN S19 >gi|7440508|pir||C71355 probable
ribosomal protein S19 (rpsS) - syphilis spirochete
>gi|3322457|gb|AAC65178.1| (AE001202) ribosomal protein
S19 (rpsS) [Treponema pallidum]
Length = 95
Score = 70.2 bits (169), Expect = 9e-12
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKG--KYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVP 91
RS+K+G ++K R + + K + K I+++ R ++PEMVG TI VHNGK ++P
Sbjct: 3 RSVKKGPFVDKKLYKRVVEMNKAANQRNKKVIKSYSRCSTIIPEMVGFTISVHNGKSWIP 62
Query: 92 VEIKPEMIGHYLGEFAPTR 110
V I E +GH LGEF+PTR
Sbjct: 63 VYITEEFVGHKLGEFSPTR 81
>sp|O66435|RS19_AQUAE 30S RIBOSOMAL PROTEIN S19
Length = 219
Score = 70.2 bits (169), Expect = 9e-12
Identities = 35/65 (53%), Positives = 43/65 (65%)
Query: 46 KLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGE 105
KL +IR + K +RT+ R ++PE VG TI VHNGK FVPV I +M+GH LGE
Sbjct: 139 KLWVRIRKMNETGERKVVRTYSRATTIIPEFVGHTIAVHNGKTFVPVYITQDMVGHKLGE 198
Query: 106 FAPTR 110
FAPTR
Sbjct: 199 FAPTR 203
>sp|P75576|RS19_MYCPN 30S RIBOSOMAL PROTEIN S19 >gi|2146629|pir||S73988 ribosomal protein
S19 - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674367|gb|AAB96310.1| (AE000061) ribosomal protein
S19~MPN169(new), 663(Himmelreich et al., 1996)
[Mycoplasma pneumoniae]
Length = 87
Score = 69.9 bits (168), Expect = 1e-11
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS K+G + LL+K+ K + +PI+T R + PE VG T VHNGK F+ V
Sbjct: 3 RSAKKGAFVDAH-LLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVHNGKTFINVY 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ +M+GH LGEF+PTR QH A
Sbjct: 62 VTDDMVGHKLGEFSPTRNFKQHTA 85
>sp|P57587|RS19_BUCAI 30S RIBOSOMAL PROTEIN S19 >gi|10039179|dbj|BAB13213.1| (AP001119)
30S ribosomal protein S19 [Buchnera sp. APS]
Length = 92
Score = 69.5 bits (167), Expect = 2e-11
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ + K KPI+T R + P MVGLTI +HNG+ +PV
Sbjct: 3 RSLKKGPFIDIS-LLKKVEKSVKINDKKPIKTWSRRSTIFPNMVGLTISIHNGRSHIPVF 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
+ EM+GH LGEF+ TR H A
Sbjct: 62 VTEEMVGHKLGEFSLTRTYRGHTA 85
>sp|P11256|RS19_YERPS 30S RIBOSOMAL PROTEIN S19 >gi|79205|pir||S04144 ribosomal protein
S19 - Yersinia pseudotuberculosis (fragment)
>gi|48649|emb|CAA32546.1| (X14363) ribosomal protein S19
(AA 1 - 74) [Yersinia pseudotuberculosis]
Length = 74
Score = 69.1 bits (166), Expect = 2e-11
Identities = 37/73 (50%), Positives = 47/73 (63%), Gaps = 1/73 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ A + KPIRT R V P M+GLTI VHNG++ VPV
Sbjct: 3 RSLKKGPFIDLH-LLKKVEKAVESGDKKPIRTWSRRSTVFPNMIGLTIAVHNGRQHVPVF 61
Query: 94 IKPEMIGHYLGEF 106
+ EM+GH LGEF
Sbjct: 62 VSDEMVGHKLGEF 74
>pir||D81231 30S ribosomal protein S19 NMB0146 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225364|gb|AAF40604.1| (AE002373) 30S ribosomal
protein S19 [Neisseria meningitidis MC58]
>gi|7378897|emb|CAB83440.1| (AL162752) 30S ribosomal
protein S19 [Neisseria meningitidis Z2491]
Length = 92
Score = 68.7 bits (165), Expect = 3e-11
Identities = 36/77 (46%), Positives = 49/77 (62%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + LL+K+ A+ +PI+T R +LP+ +GLTI VHNG+ VPV
Sbjct: 3 RSLKKGPYVDLH-LLKKVDAARASNDKRPIKTWSRRSTILPDFIGLTIAVHNGRTHVPVF 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I M+GH LGEF+ TR
Sbjct: 62 ISDNMVGHKLGEFSLTR 78
>prf||1403295A ribosomal protein S19 [Bacillus stearothermophilus]
Length = 91
Score = 68.3 bits (164), Expect = 3e-11
Identities = 36/77 (46%), Positives = 48/77 (61%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G ++ L++KI + + IRT R + P+ VG TI VHNG+ VPV
Sbjct: 2 RSLKKGPFSDEH-LMKKIEKLNETGQKQVIRTDSRRSTIFPQFVGRTIAVHNGRRHVPVY 60
Query: 94 IKPEMIGHYLGEFAPTR 110
I +M+GH LGEFAPTR
Sbjct: 61 ITEDMVGHKLGEFAPTR 77
>sp|P73316|RS19_SYNY3 30S RIBOSOMAL PROTEIN S19 >gi|7440514|pir||S77498 ribosomal protein
S19 - Synechocystis sp. (strain PCC 6803)
>gi|1652423|dbj|BAA17345.1| (D90905) 30S ribosomal
protein S19 [Synechocystis sp.]
Length = 92
Score = 68.3 bits (164), Expect = 3e-11
Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 34 RSLKRGLTPEQKKLLRKI-RLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPV 92
RSLK+G LLRKI +L KG + ++T R +LP+MVG TI VHNG++ VPV
Sbjct: 3 RSLKKGPFVAAS-LLRKIDKLNDKGD-KQVVKTWSRASTILPQMVGHTIAVHNGRQHVPV 60
Query: 93 EIKPEMIGHYLGEFAPTRKRVQH 115
+ +M+GH LGEFAPTR H
Sbjct: 61 FVSEQMVGHKLGEFAPTRTFRSH 83
>sp|P94271|RS19_BORBU 30S RIBOSOMAL PROTEIN S19 >gi|7440515|pir||A70160 ribosomal protein
S19 (rpsS) - Lyme disease spirochete
>gi|2688409|gb|AAC66860.1| (AE001152) ribosomal protein
S19 (rpsS) [Borrelia burgdorferi]
Length = 92
Score = 68.3 bits (164), Expect = 3e-11
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RS+K+G E K L +K+ + + I+T+ R ++PEMV LTI V+NGK F+P+
Sbjct: 3 RSIKKGPFIE-KSLYQKVLSSFGSEKRVVIKTYSRSSTIIPEMVSLTISVYNGKTFIPIY 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I +++GH LGEF+PTR
Sbjct: 62 ITEDLVGHKLGEFSPTR 78
>gb|AAF73629.1| (AE002173) ribosomal protein S19 [Chlamydophila pneumoniae AR39]
>gi|8979015|dbj|BAA98850.1| (AP002547) S19 ribosomal
protein [Chlamydophila pneumoniae J138]
Length = 88
Score = 67.5 bits (162), Expect = 6e-11
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSL++G + LL+K+R + PI+T R ++ PEM+G T VHNGK+F+ V
Sbjct: 3 RSLRKGPFVDHH-LLKKVRAMNIEEKKTPIKTWSRRSMITPEMIGHTFEVHNGKKFLTVF 61
Query: 94 IKPEMIGHYLGEFAPTR 110
+ M+GH LGEF+PTR
Sbjct: 62 VSETMVGHKLGEFSPTR 78
>sp|O24693|RS19_SYNP6 30S RIBOSOMAL PROTEIN S19 >gi|2446894|dbj|BAA22453.1| (AB000111)
30S ribosomal protein S19 [Synechococcus sp.]
Length = 91
Score = 67.5 bits (162), Expect = 6e-11
Identities = 36/77 (46%), Positives = 49/77 (62%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G L + +L KG + I+T R +LP+M+G TI VHNG++ VPV
Sbjct: 3 RSLKKGPFVADHLLRKVEKLNAKGD-KQVIKTWSRASTILPQMIGHTIAVHNGRQHVPVY 61
Query: 94 IKPEMIGHYLGEFAPTR 110
+ +M+GH LGEFAPTR
Sbjct: 62 VTEQMVGHKLGEFAPTR 78
>sp|Q9Z7R1|RS19_CHLPN 30S RIBOSOMAL PROTEIN S19 >gi|7440529|pir||E72055 S19 ribosomal
protein - Chlamydophila pneumoniae (strain CWL029)
>gi|4376941|gb|AAD18782.1| (AE001647) S19 Ribosomal
Protein [Chlamydophila pneumoniae CWL029]
Length = 88
Score = 67.5 bits (162), Expect = 6e-11
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSL++G + LL+K+R + PI+T R ++ PEM+G T VHNGK+F+ V
Sbjct: 3 RSLRKGPFVDHH-LLKKVRAMNIEEKKTPIKTWSRRSMITPEMIGHTFEVHNGKKFLTVF 61
Query: 94 IKPEMIGHYLGEFAPTR 110
+ M+GH LGEF+PTR
Sbjct: 62 VSETMVGHKLGEFSPTR 78
>gi|11466367 ribosomal protein S19 [Mesostigma viride]
>gi|7259510|gb|AAF43811.1|AF166114_23 (AF166114)
ribosomal protein S19 [Mesostigma viride]
Length = 93
Score = 67.5 bits (162), Expect = 6e-11
Identities = 37/77 (48%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G LL+KI K K I T R +LP M+G TI VHNG+E +P+
Sbjct: 3 RSLKKGPFVADH-LLKKIEFLNVKKEKKVITTWSRGSTILPIMIGHTIAVHNGREHLPIF 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I +M+GH LGEF+PTR
Sbjct: 62 ITDQMVGHKLGEFSPTR 78
>gi|11467341 ribosomal protein S19 [Cyanophora paradoxa]
>gi|133847|sp|P15761|RR19_CYAPA CYANELLE 30S RIBOSOMAL
PROTEIN S19 >gi|71031|pir||R3KT19 ribosomal protein S19
- Cyanophora paradoxa cyanelle >gi|11405|emb|CAA35538.1|
(X17498) S19 ribosomal protein (AA 1-92) [Cyanophora
paradoxa] >gi|1016142|gb|AAA81229.1| (U30821) ribosomal
protein S19 [Cyanophora paradoxa]
Length = 92
Score = 67.1 bits (161), Expect = 8e-11
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G LL+K+ L + I+T R +LP MVG TI VHNG++ +PV
Sbjct: 3 RSLKKGPFIAHH-LLKKVELLNTSGKTEVIKTWSRASTILPMMVGHTIAVHNGRQHLPVF 61
Query: 94 IKPEMIGHYLGEFAPTR 110
I +M+GH LGEFAPTR
Sbjct: 62 ITDQMVGHKLGEFAPTR 78
>sp|Q9ZCQ9|RS19_RICPR 30S RIBOSOMAL PROTEIN S19 >gi|7440518|pir||E71671 ribosomal protein
S19 - Rickettsia prowazekii >gi|3861195|emb|CAA15095.1|
(AJ235272) 30S RIBOSOMAL PROTEIN S19 (rpsS) [Rickettsia
prowazekii]
Length = 92
Score = 67.1 bits (161), Expect = 8e-11
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 47 LLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEF 106
L++K++ K ++ I+T R +LP VG T VHNG +F+PV I EM+G LGEF
Sbjct: 15 LIKKVQKLMKSGKSEMIKTWSRRSTILPIFVGFTFSVHNGNKFIPVYINEEMVGRKLGEF 74
Query: 107 APTRKRVQHGA 117
APTR HGA
Sbjct: 75 APTRTFHGHGA 85
>sp|Q9Z9L0|RS19_BACHD 30S RIBOSOMAL PROTEIN S19 >gi|11276639|pir||T44387 bosomal protein
S19 [imported] - Bacillus halodurans
>gi|4512408|dbj|BAA75275.1| (AB017508) rpsS homologue
(identity of 87% to B. subtilis ) [Bacillus halodurans]
>gi|10172750|dbj|BAB03857.1| (AP001507) ribosomal
protein S19 (BS19) [Bacillus halodurans]
Length = 92
Score = 67.1 bits (161), Expect = 8e-11
Identities = 36/84 (42%), Positives = 50/84 (58%), Gaps = 1/84 (1%)
Query: 34 RSLKRGLTPEQKKLLRKIRLAKKGKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVE 93
RSLK+G + L++KI + K ++T R + PE VG TI V++G++ VPV
Sbjct: 3 RSLKKGPFVDDH-LMKKIETLNESNDKKVVKTWSRRSTIFPEFVGHTIAVYDGRKHVPVY 61
Query: 94 IKPEMIGHYLGEFAPTRKRVQHGA 117
I +M+GH LGEFAPTR H A
Sbjct: 62 ISEDMVGHKLGEFAPTRTYKGHAA 85
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.139 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47250510
Number of Sequences: 2977
Number of extensions: 1839220
Number of successful extensions: 9931
Number of sequences better than 1.0e-10: 69
Number of HSP's better than 0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9845
Number of HSP's gapped (non-prelim): 69
length of query: 132
length of database: 189,106,746
effective HSP length: 53
effective length of query: 79
effective length of database: 157,386,935
effective search space: 12433567865
effective search space used: 12433567865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)