BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2125 (rps3P) DE:SSU ribosomal protein S3P (rps3P)
(210 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75147 ssu ribosomal protein s3p (rps3p) PAB2125 - Pyrococc... 410 e-114
sp|O59424|RS3_PYRHO 30S RIBOSOMAL PROTEIN S3P >gi|7440097|pir||A... 404 e-112
sp|P54034|RS3_METJA 30S RIBOSOMAL PROTEIN S3P >gi|2129268|pir||E... 229 1e-59
sp|O26116|RS3_METTH 30S RIBOSOMAL PROTEIN S3P >gi|7440099|pir||F... 219 3e-56
gi|11499503 SSU ribosomal protein S3P (rps3P) [Archaeoglobus ful... 212 4e-54
sp|P20281|RS3_HALMA 30S RIBOSOMAL PROTEIN S3P (HMAS3) (HS1) >gi|... 211 6e-54
pir||T43822 ribosomal protein S3 [validated] - Halobacterium sal... 205 3e-52
sp|P15009|RS3_HALHA 30S RIBOSOMAL PROTEIN S3P (HS4) (HHAS3) >gi|... 203 2e-51
gb|AAK41012.1| SSU ribosomal protein S3AB (rps3AB) [Sulfolobus s... 196 2e-49
sp|Q9UXA0|RS3_SULSO 30S RIBOSOMAL PROTEIN S3P >gi|6015765|emb|CA... 196 2e-49
emb|CAC12389.1| (AL445067) probable 30S ribosomal protein S3 [Th... 170 1e-41
sp|Q9YF78|RS3_AERPE 30S RIBOSOMAL PROTEIN S3P >gi|7440101|pir||B... 167 8e-41
sp|Q06559|RS3_DROME 40S RIBOSOMAL PROTEIN S3 >gi|422496|pir||S35... 139 2e-32
sp|P47835|RS3B_XENLA 40S RIBOSOMAL PROTEIN S3B (S1B) >gi|2119058... 139 2e-32
pir||S32728 ribosomal protein S3 - fruit fly (Drosophila melanog... 138 5e-32
sp|P02350|RS3A_XENLA 40S RIBOSOMAL PROTEIN S3A (S1A) >gi|70851|p... 138 5e-32
gi|6755372 ribosomal protein S3 [Mus musculus] >gi|1173253|sp|P1... 138 7e-32
gi|11437285 ribosomal protein S3 [Homo sapiens] >gi|417719|sp|P2... 138 7e-32
pir||R3RT3 ribosomal protein S3, cytosolic [validated] - rat 137 9e-32
sp|P48152|RS3_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3 >gi|744010... 137 9e-32
gb|AAB19349.2| (S42658) S3 ribosomal protein [Homo sapiens] 137 9e-32
gi|4506721 ribosomal protein S3 [Homo sapiens] >gi|32532|emb|CAA... 137 1e-31
sp|P79891|RS3_AMBME 40S RIBOSOMAL PROTEIN S3 >gi|1836060|gb|AAB4... 136 2e-31
pir||T45927 ribosomal protein S3a homolog - Arabidopsis thaliana... 134 8e-31
sp|P48153|RS3_MANSE 40S RIBOSOMAL PROTEIN S3 >gi|527680|gb|AAB05... 133 2e-30
sp|O60128|RS3_SCHPO 40S RIBOSOMAL PROTEIN S3 >gi|7489988|pir||T3... 132 2e-30
gb|AAD24852.1|AC007071_24 (AC007071) 40S ribosomal protein; cont... 132 3e-30
dbj|BAB08712.1| (AB015477) 40S ribosomal protein S3 [Arabidopsis... 131 5e-30
gb|AAA35010.1| (L31405) ribosomal protein S3 [Saccharomyces cere... 129 3e-29
gi|6324151 Ribosomal protein S3 (rp13) (YS3); Rps3p [Saccharomyc... 127 8e-29
gb|AAB36959.1| (U78756) RpgG [Dictyostelium discoideum] 116 2e-25
gb|AAF16402.1| (AF207603) ribosomal protein RPS3 [Musca domestica] 115 3e-25
pir||E75534 ribosomal protein S3 - Deinococcus radiodurans (stra... 104 8e-22
pdb|1FJF|C Chain C, Structure Of The Thermus Thermophilus 30s Ri... 102 3e-21
sp|Q9ZJR9|RS3_HELPJ 30S RIBOSOMAL PROTEIN S3 >gi|7440136|pir||A7... 96 3e-19
sp|P44372|RS3_HAEIN 30S RIBOSOMAL PROTEIN S3 >gi|1075272|pir||B6... 92 4e-18
sp|P56010|RS3_HELPY 30S RIBOSOMAL PROTEIN S3 >gi|7440130|pir||A6... 92 4e-18
sp|P55827|RS3_ACTAC 30S RIBOSOMAL PROTEIN S3 >gi|1841328|dbj|BAA... 92 6e-18
pir||A81665 ribosomal protein S3 TC0809 [imported] - Chlamydia m... 91 8e-18
pir||G83115 30S ribosomal protein S3 PA4257 [imported] - Pseudom... 91 1e-17
sp|Q9ZI44|RS3_AQUPY 30S RIBOSOMAL PROTEIN S3 >gi|4165871|gb|AAD0... 90 2e-17
prf||1404256A ribosomal protein HS4 [Halobacterium halobium] 89 3e-17
sp|O84527|RS3_CHLTR 30S RIBOSOMAL PROTEIN S3 >gi|7440124|pir||H7... 89 5e-17
gb|AAC36521.1| (U89414) ribosomal protein S3 [Mus musculus] 87 1e-16
sp|Q9Z7R3|RS3_CHLPN 30S RIBOSOMAL PROTEIN S3 >gi|7440137|pir||C7... 87 1e-16
pir||F81611 ribosomal protein S3 CP0106 [imported] - Chlamydophi... 87 1e-16
sp|P46172|RS3_BUCAK 30S RIBOSOMAL PROTEIN S3 >gi|632235|pir||PC2... 86 3e-16
sp|P02352|RS3_ECOLI 30S RIBOSOMAL PROTEIN S3 >gi|70862|pir||R3EC... 86 3e-16
pir||F81231 30S ribosomal protein S3 NMB0148 [imported] - Neisse... 86 3e-16
emb|CAB82076.1| (AL161803) 30S ribosomal protein S3 [Streptomyce... 85 6e-16
sp|Q9Z9K8|RS3_BACHD 30S RIBOSOMAL PROTEIN S3 >gi|11275286|pir||T... 85 8e-16
emb|CAB92940.1| (AJ290932) putative 40S ribosomal protein S3 [Pl... 85 8e-16
sp|O52338|RS3_MYCGA 30S RIBOSOMAL PROTEIN S3 >gi|2766509|gb|AAB9... 84 1e-15
pir||H82058 ribosomal protein S3 VC2590 [imported] - Vibrio chol... 83 2e-15
sp|P57585|RS3_BUCAI 30S RIBOSOMAL PROTEIN S3 >gi|10039177|dbj|BA... 83 2e-15
sp|P23309|RS3_BACST 30S RIBOSOMAL PROTEIN S3 (BS2) >gi|80223|pir... 83 3e-15
sp|O66437|RS3_AQUAE 30S RIBOSOMAL PROTEIN S3 >gi|7440127|pir||B7... 82 4e-15
gb|AAF82383.1|AF281313_1 (AF281313) ribosomal protein S3; RPS3 [... 82 7e-15
sp|P73314|RS3_SYNY3 30S RIBOSOMAL PROTEIN S3 >gi|7440129|pir||S7... 81 9e-15
pir||F82717 30S ribosomal protein S3 XF1158 [imported] - Xylella... 80 2e-14
sp|Q9WW37|RS3_STRPN 30S RIBOSOMAL PROTEIN S3 >gi|4927746|gb|AAD3... 80 2e-14
pir||A81268 30S ribosomal protein S3 Cj1701c [imported] - Campyl... 80 3e-14
sp|O06048|RS3_MYCBO 30S RIBOSOMAL PROTEIN S3 >gi|2113872|emb|CAA... 78 1e-13
sp|P95055|RS3_MYCTU 30S RIBOSOMAL PROTEIN S3 >gi|7440123|pir||F7... 78 1e-13
gi|11467339 ribosomal protein S3 [Cyanophora paradoxa] >gi|13392... 77 1e-13
gb|AAD27643.1|AF133129_1 (AF133129) ribosomal protein S3 [Merion... 77 1e-13
gb|AAC45962.1| (U43929) S3 [Bacillus subtilis] 77 2e-13
sp|P46772|RS3_THEMA 30S RIBOSOMAL PROTEIN S3 >gi|625510|pir||S40... 76 2e-13
sp|O83225|RS3_TREPA 30S RIBOSOMAL PROTEIN S3 >gi|7440126|pir||E7... 76 4e-13
sp|P21465|RS3_BACSU 30S RIBOSOMAL PROTEIN S3 (BS3) (BS2) >gi|744... 75 5e-13
sp|O32987|RS3_MYCLE 30S RIBOSOMAL PROTEIN S3 >gi|11275287|pir||T... 75 5e-13
sp|P41205|RS3_MYCPN 30S RIBOSOMAL PROTEIN S3 >gi|2146632|pir||S7... 74 1e-12
sp|P47403|RS3_MYCGE 30S RIBOSOMAL PROTEIN S3 >gi|1361833|pir||D6... 73 3e-12
sp|O31161|RS3_SPICI 30S RIBOSOMAL PROTEIN S3 >gi|2623862|gb|AAC3... 73 3e-12
gi|11467723 ribosomal protein S3 [Guillardia theta] >gi|3914822|... 73 3e-12
sp|P94273|RS3_BORBU 30S RIBOSOMAL PROTEIN S3 >gi|7440133|pir||C7... 72 4e-12
sp|Q9ZCR1|RS3_RICPR 30S RIBOSOMAL PROTEIN S3 >gi|7440131|pir||C7... 72 6e-12
sp|P41118|RS3_ACHSP 30S RIBOSOMAL PROTEIN S3 >gi|2148027|pir||I3... 71 8e-12
gi|11466365 ribosomal protein S3 [Mesostigma viride] >gi|7259508... 71 8e-12
gi|11465774 30S ribosomal protein S3 [Porphyra purpurea] >gi|171... 71 1e-11
sp|Q9XD30|RS3_LEPIN 30S RIBOSOMAL PROTEIN S3 >gi|5163210|gb|AAD4... 70 2e-11
>pir||C75147 ssu ribosomal protein s3p (rps3p) PAB2125 - Pyrococcus abyssi
(strain Orsay) >gi|5457768|emb|CAB49258.1| (AJ248284)
SSU ribosomal protein S3P (rps3P) [Pyrococcus abyssi]
Length = 210
Score = 410 bits (1042), Expect = e-114
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR
Sbjct: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI
Sbjct: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV
Sbjct: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 181 AIMPPDARLPDEIEIIEKPVEEEVSSNEAE 210
AIMPPDARLPDEIEIIEKPVEEEVSSNEAE
Sbjct: 181 AIMPPDARLPDEIEIIEKPVEEEVSSNEAE 210
>sp|O59424|RS3_PYRHO 30S RIBOSOMAL PROTEIN S3P >gi|7440097|pir||A71187 probable
ribosomal protein S3 - Pyrococcus horikoshii
>gi|3258205|dbj|BAA30888.1| (AP000007) 210aa long
hypothetical 30S ribosomal protein S3 [Pyrococcus
horikoshii]
Length = 210
Score = 404 bits (1026), Expect = e-112
Identities = 204/210 (97%), Positives = 209/210 (99%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR
Sbjct: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAY+AMRAI
Sbjct: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAI 120
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
M+NGARGVEIR+SGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV
Sbjct: 121 MNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
Query: 181 AIMPPDARLPDEIEIIEKPVEEEVSSNEAE 210
AIMPPDARLPDEIEI+EKP EEEVS+NEAE
Sbjct: 181 AIMPPDARLPDEIEIVEKPAEEEVSTNEAE 210
>sp|P54034|RS3_METJA 30S RIBOSOMAL PROTEIN S3P >gi|2129268|pir||E64357 ribosomal protein
S3 - Methanococcus jannaschii >gi|1591163|gb|AAB98450.1|
(U67497) SSU ribosomal protein S3P (rpsC) [Methanococcus
jannaschii]
Length = 208
Score = 229 bits (579), Expect = 1e-59
Identities = 117/206 (56%), Positives = 152/206 (72%), Gaps = 5/206 (2%)
Query: 3 IERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRI 62
IER F++E VK +LIDE+ +KEL +AGY DI+KTP+GTK+II+A PG+VIGR G RI
Sbjct: 2 IERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRI 61
Query: 63 RELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
RELT L ++FG+E PQIDV+ ++NP L+A+V A ++AQ+LERG+HFRR + A+R +M+
Sbjct: 62 RELTETLAKEFGVEKPQIDVKPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMN 121
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
GA+GV + ISGKLTGERA++ +F GY+ G PAE LV KG A A K GVIGV V I
Sbjct: 122 AGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKI 181
Query: 183 MPPDARLPDEIEI-----IEKPVEEE 203
M PD LPDEI I ++ VEEE
Sbjct: 182 MRPDVLLPDEIIIKEDAEVKHVVEEE 207
>sp|O26116|RS3_METTH 30S RIBOSOMAL PROTEIN S3P >gi|7440099|pir||F69206 ribosomal protein
S3 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621055|gb|AAB84528.1| (AE000795) ribosomal
protein S3 (E.coli S3) [Methanobacterium
thermoautotrophicum]
Length = 258
Score = 219 bits (551), Expect = 3e-56
Identities = 106/211 (50%), Positives = 148/211 (69%), Gaps = 5/211 (2%)
Query: 3 IERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRI 62
IE+ F+ E ++ IDE+LEKEL RAGYGG+D++ TP+GT V+++A PG VIGRGG+ +
Sbjct: 2 IEKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTV 61
Query: 63 RELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
R +T+ L+ +F LENPQ++V+E+ P LN K+ A +IA L+RG+HFRR AY MR IM+
Sbjct: 62 RAITQKLKNKFDLENPQVEVKEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMA 121
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
GA+GVE+ ISGK+ G R+ + +F GY+ K G P+ V +G+A LK GV+GV V I
Sbjct: 122 AGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRI 181
Query: 183 MPPDARLPDEIEI-----IEKPVEEEVSSNE 208
MPPD LPD++EI E P EE ++E
Sbjct: 182 MPPDVVLPDKVEIEDPRVTETPAEEASEASE 212
>gi|11499503 SSU ribosomal protein S3P (rps3P) [Archaeoglobus fulgidus]
>gi|6094176|sp|O28360|RS3_ARCFU 30S RIBOSOMAL PROTEIN
S3P >gi|7440098|pir||F69489 SSU ribosomal protein S3P
(rps3P) homolog - Archaeoglobus fulgidus
>gi|2648625|gb|AAB89335.1| (AE000971) SSU ribosomal
protein S3P (rps3P) [Archaeoglobus fulgidus]
Length = 229
Score = 212 bits (533), Expect = 4e-54
Identities = 101/201 (50%), Positives = 146/201 (72%), Gaps = 1/201 (0%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MA+ER F++E +K++++ E+++ E+R AG+GG+DI +TPLGT+V +F PG VIG+GGR
Sbjct: 1 MAVERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGR 60
Query: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
RI+ LT L + FG+ENPQ+ V E++ P NA++ A +A+ALERG +FRRA Y + I
Sbjct: 61 RIKALTEKL-KDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRI 119
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
M GA+G EI ISGKL ERA++ +F G + G+PAE++V KG+ A+ KLGV+GV V
Sbjct: 120 MEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSV 179
Query: 181 AIMPPDARLPDEIEIIEKPVE 201
I+PPD LPDE E+ + +E
Sbjct: 180 RIIPPDVTLPDEFEVKDVNIE 200
>sp|P20281|RS3_HALMA 30S RIBOSOMAL PROTEIN S3P (HMAS3) (HS1) >gi|70852|pir||R3HS3S
ribosomal protein S3 [validated] - Haloarcula
marismortui >gi|148807|gb|AAA86865.1| (J05222) ribosomal
protein S3 [Haloarcula marismortui]
Length = 304
Score = 211 bits (531), Expect = 6e-54
Identities = 103/211 (48%), Positives = 149/211 (69%), Gaps = 1/211 (0%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MA E+ FI + ++ IDEF +EL RAGYGG+D+ KTP+GT++++ A PG VIG+GG+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
IR++T LE +F L++PQ+DVQE+ P LNA++ A R+A ALERG +FR+A + + I
Sbjct: 61 NIRKITTELEDRFNLDDPQVDVQEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRI 120
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
M +GA G EI +SGK+TG R++ +F +GY+ G PAE +V G A++KLG IGV+V
Sbjct: 121 MESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRV 180
Query: 181 AIMPPDARLPDEIEIIEK-PVEEEVSSNEAE 210
I+PP+A LPD+ EI E VE+ V+ + E
Sbjct: 181 KIIPPNAELPDDFEIYEDVDVEDYVADTDGE 211
>pir||T43822 ribosomal protein S3 [validated] - Halobacterium salinarum
>gi|2425182|dbj|BAA22276.1| (AB006961) ribosomal protein
S3 [Halobacterium halobium] >gi|10581165|gb|AAG19942.1|
(AE005077) 30S ribosomal protein S3P; Rps3p
[Halobacterium sp. NRC-1]
Length = 302
Score = 205 bits (516), Expect = 3e-52
Identities = 102/210 (48%), Positives = 145/210 (68%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MA E FI + ++ IDEF +EL RAGYGG+++ TP+G ++++ A PG VIG+GG+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
IR++T LE +F LE+PQIDVQE++ P LNA++ A R+A ALERG +FR+A + + I
Sbjct: 61 NIRKITTQLEERFDLEDPQIDVQEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRI 120
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
M +GA G EI +SGK+TG R + +F +GY+ G PAE +V G A++KLG IGV V
Sbjct: 121 MESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNV 180
Query: 181 AIMPPDARLPDEIEIIEKPVEEEVSSNEAE 210
I+PP+A LPD+ EI E E++ +EAE
Sbjct: 181 KIIPPNAELPDDFEIQEDADIEDLVVDEAE 210
>sp|P15009|RS3_HALHA 30S RIBOSOMAL PROTEIN S3P (HS4) (HHAS3) >gi|81068|pir||S11598
ribosomal protein S3 - Halobacterium halobium
Length = 302
Score = 203 bits (510), Expect = 2e-51
Identities = 101/210 (48%), Positives = 144/210 (68%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MA E FI + ++ IDEF +EL RAGYG +++ TP+G ++++ A PG VIG+GG+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGSMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 61 RIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
IR++T LE +F LE+PQIDVQE++ P LNA++ A R+A ALERG +FR+A + + I
Sbjct: 61 NIRKITTQLEERFDLEDPQIDVQEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRI 120
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
M +GA G EI +SGK+TG R + +F +GY+ G PAE +V G A++KLG IGV V
Sbjct: 121 MESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNV 180
Query: 181 AIMPPDARLPDEIEIIEKPVEEEVSSNEAE 210
I+PP+A LPD+ EI E E++ +EAE
Sbjct: 181 KIIPPNAELPDDFEIQEDADIEDLVVDEAE 210
>gb|AAK41012.1| SSU ribosomal protein S3AB (rps3AB) [Sulfolobus solfataricus]
Length = 229
Score = 196 bits (493), Expect = 2e-49
Identities = 99/204 (48%), Positives = 143/204 (69%), Gaps = 2/204 (0%)
Query: 3 IERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRI 62
I+RYF+ +++ ++ IDE+L K+ A Y G+++ KTP+GT+VII+A P +IGRGGR I
Sbjct: 4 IKRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNI 63
Query: 63 RELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
++L +I E+ FGLENPQI + ++NP LNA+V A R+A ALE+G HFRRAA+ +MR IM+
Sbjct: 64 KQLAQIFEKVFGLENPQITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMN 123
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
GA G EI ISGKLT ERA+ + +G + K G E ++ + A A+LK G+ GV+V I
Sbjct: 124 AGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVI 183
Query: 183 MPPDARLPDEIEIIEKP-VEEEVS 205
P ++ D+I + E P V +EVS
Sbjct: 184 TKP-LKIEDKINLKESPSVPQEVS 206
>sp|Q9UXA0|RS3_SULSO 30S RIBOSOMAL PROTEIN S3P >gi|6015765|emb|CAB57592.1| (Y18930)
ribosomal protein S3 (HMAS3) [Sulfolobus solfataricus]
Length = 229
Score = 196 bits (493), Expect = 2e-49
Identities = 99/204 (48%), Positives = 143/204 (69%), Gaps = 2/204 (0%)
Query: 3 IERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRI 62
I+RYF+ +++ ++ IDE+L K+ A Y G+++ KTP+GT+VII+A P +IGRGGR I
Sbjct: 4 IKRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNI 63
Query: 63 RELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
++L +I E+ FGLENPQI + ++NP LNA+V A R+A ALE+G HFRRAA+ +MR IM+
Sbjct: 64 KQLAQIFEKVFGLENPQITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMN 123
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
GA G EI ISGKLT ERA+ + +G + K G E ++ + A A+LK G+ GV+V I
Sbjct: 124 AGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVI 183
Query: 183 MPPDARLPDEIEIIEKP-VEEEVS 205
P ++ D+I + E P V +EVS
Sbjct: 184 TKP-LKIEDKINLKESPSVPQEVS 206
>emb|CAC12389.1| (AL445067) probable 30S ribosomal protein S3 [Thermoplasma
acidophilum]
Length = 225
Score = 170 bits (426), Expect = 1e-41
Identities = 83/203 (40%), Positives = 133/203 (64%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
ER FI EAVK +L+ E++ KE AG+G + +K+TP GT + ++ PG VIGR G +++
Sbjct: 3 ERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQ 62
Query: 64 ELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSN 123
++T LE+++G+E PQI+V+++K+P LN V A +IA +LE+G +R+A ++ +
Sbjct: 63 QMTDTLEKKYGIETPQIEVKDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQA 122
Query: 124 GARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183
GA+GV I+ISGK++GERA+ +F G + G P + G++ A LK+G++GV V I+
Sbjct: 123 GAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKIL 182
Query: 184 PPDARLPDEIEIIEKPVEEEVSS 206
P+ +LPD I EEV +
Sbjct: 183 NPEYKLPDVFSIENITGGEEVGT 205
>sp|Q9YF78|RS3_AERPE 30S RIBOSOMAL PROTEIN S3P >gi|7440101|pir||B72728 probable
ribosomal protein S3 APE0363 - Aeropyrum pernix (strain
K1) >gi|5104002|dbj|BAA79318.1| (AP000059) 246aa long
hypothetical 30S ribosomal protein S3 [Aeropyrum pernix]
Length = 246
Score = 167 bits (419), Expect = 8e-41
Identities = 92/209 (44%), Positives = 133/209 (63%), Gaps = 2/209 (0%)
Query: 3 IERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRI 62
+ ++F+ + + IDE+L + AGY + + +T LGT + I+A P +IGR G I
Sbjct: 5 VVKHFLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATI 64
Query: 63 RELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
R L + + FGL NP+I V++ +NP L+A+VQA RIA+++ERGIHFRR A+AA+ IMS
Sbjct: 65 RRLQEVFQTVFGLPNPRIRVEQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMS 124
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
NGA GVEI ISGKLT ERA+ +F G + K G+ + LV + A A L GVIGV V I
Sbjct: 125 NGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVII 184
Query: 183 MPPDARLPDEIEI-IEKPVEEEVSSNEAE 210
+ P + D + I E+ V++ V + +E
Sbjct: 185 VKP-GKPGDHVRIKSEEEVKDVVDAIRSE 212
>sp|Q06559|RS3_DROME 40S RIBOSOMAL PROTEIN S3 >gi|422496|pir||S35620 ribosomal protein
S3.e, cytosolic - fruit fly (Drosophila melanogaster)
>gi|290275|gb|AAA28875.1| (L13690) ribosomal protein
S3/AP endonuclease DNA repair protein [Drosophila
melanogaster] >gi|7300992|gb|AAF56129.1| (AE003743) RpS3
gene product [Drosophila melanogaster]
Length = 246
Score = 139 bits (348), Expect = 2e-32
Identities = 76/212 (35%), Positives = 123/212 (57%), Gaps = 12/212 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIR
Sbjct: 10 KRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIR 69
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F E +I++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 70 ELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIM 129
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 130 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 189
Query: 182 IM---------PPDARLPDEIEIIEKPVEEEV 204
+M P LPD + ++E P EE++
Sbjct: 190 VMLPYDPKNKIGPKKPLPDNVSVVE-PKEEKI 220
>sp|P47835|RS3B_XENLA 40S RIBOSOMAL PROTEIN S3B (S1B) >gi|2119058|pir||I51635 ribosomal
protein S1 - African clawed frog
>gi|587600|emb|CAA84291.1| (Z34530) ribosomal protein S1
[Xenopus laevis] >gi|587602|emb|CAA84290.1| (Z34529)
ribosomal protein [Xenopus laevis]
Length = 246
Score = 139 bits (347), Expect = 2e-32
Identities = 78/215 (36%), Positives = 123/215 (56%), Gaps = 12/215 (5%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
M+ +R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GR
Sbjct: 5 MSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGR 64
Query: 61 RIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMR 118
RIRELT +++++FG +++ +++ L A QA + L G+ RRA Y +R
Sbjct: 65 RIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 119 AIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGV 178
IM +GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGI 184
Query: 179 KVAIM---------PPDARLPDEIEIIEKPVEEEV 204
KV IM P LPD + I+E P +E V
Sbjct: 185 KVKIMLPWDPSGKIGPKKPLPDHVSIVE-PKDEIV 218
>pir||S32728 ribosomal protein S3 - fruit fly (Drosophila melanogaster)
>gi|296094|emb|CAA51425.1| (X72921) ribosomal protein S3
[Drosophila melanogaster]
Length = 246
Score = 138 bits (344), Expect = 5e-32
Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 12/212 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP GT++II A V+ GRRIR
Sbjct: 10 KRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGRRIR 69
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F E +I++ +++ L A QA + L + RRA Y +R IM
Sbjct: 70 ELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGELAVRRACYGVLRYIM 129
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 130 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVK 189
Query: 182 IM---------PPDARLPDEIEIIEKPVEEEV 204
+M P LPD + ++E P EE++
Sbjct: 190 VMLPYDPKNKIGPKKPLPDNVSVVE-PKEEKI 220
>sp|P02350|RS3A_XENLA 40S RIBOSOMAL PROTEIN S3A (S1A) >gi|70851|pir||R3XL3A ribosomal
protein S3a - African clawed frog
>gi|65091|emb|CAA40592.1| (X57322) ribosomal protein S1a
[Xenopus laevis]
Length = 246
Score = 138 bits (344), Expect = 5e-32
Identities = 77/212 (36%), Positives = 121/212 (56%), Gaps = 12/212 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIR
Sbjct: 8 KRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 68 ELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIEKPVEEEV 204
IM P LPD + I+E P +E V
Sbjct: 188 IMLPWDPSGKIGPKKPLPDHVSIVE-PKDEIV 218
>gi|6755372 ribosomal protein S3 [Mus musculus] >gi|1173253|sp|P17073|RS3_MOUSE
40S RIBOSOMAL PROTEIN S3 >gi|543317|pir||S41170
ribosomal protein S3, cytosolic - mouse
>gi|57728|emb|CAA35916.1| (X51536) ribosomal protein S3
(AA 1-243) [Rattus rattus] >gi|439522|emb|CAA54167.1|
(X76772) ribosomal protein S3 [Mus musculus]
Length = 243
Score = 138 bits (343), Expect = 7e-32
Identities = 74/205 (36%), Positives = 117/205 (56%), Gaps = 11/205 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIR
Sbjct: 8 KRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 68 ELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIE 197
IM P LPD + I+E
Sbjct: 188 IMLPWDPSGKIGPKKPLPDHVSIVE 212
>gi|11437285 ribosomal protein S3 [Homo sapiens] >gi|417719|sp|P23396|RS3_HUMAN
40S RIBOSOMAL PROTEIN S3 >gi|2144763|pir||R3HUS3
ribosomal protein S3, cytosolic - human
>gi|555941|gb|AAB60336.1| (U14990) ribosomal protein S3
[Homo sapiens] >gi|555943|gb|AAB60337.1| (U14991)
ribosomal protein S3 [Homo sapiens]
>gi|555945|gb|AAB60338.1| (U14992) ribosomal protein S3
[Homo sapiens]
Length = 243
Score = 138 bits (343), Expect = 7e-32
Identities = 74/205 (36%), Positives = 117/205 (56%), Gaps = 11/205 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIR
Sbjct: 8 KRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 68 ELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIE 197
IM P LPD + I+E
Sbjct: 188 IMLPWDPTGKIGPKKPLPDHVSIVE 212
>pir||R3RT3 ribosomal protein S3, cytosolic [validated] - rat
Length = 243
Score = 137 bits (342), Expect = 9e-32
Identities = 74/204 (36%), Positives = 116/204 (56%), Gaps = 11/204 (5%)
Query: 5 RYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRE 64
R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIRE
Sbjct: 9 RKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRE 68
Query: 65 LTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
LT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 69 LTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV I
Sbjct: 129 SGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKI 188
Query: 183 M---------PPDARLPDEIEIIE 197
M P LPD + I+E
Sbjct: 189 MLPWDPSGKIGPKKPLPDHVSIVE 212
>sp|P48152|RS3_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3 >gi|7440100|pir||T15579
hypothetical protein C23G10.3 - Caenorhabditis elegans
>gi|9802859|gb|AAF99870.1| (U39851) Contains similarity
to Pfam domain: PF00189 (S3_C), Score=99.7,
E-value=4.7e-31, N=1 [Caenorhabditis elegans]
Length = 247
Score = 137 bits (342), Expect = 9e-32
Identities = 77/203 (37%), Positives = 118/203 (57%), Gaps = 13/203 (6%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
++ FL KEL GY G++++ TP +VII A V+G GRRI+ELT +++++FG E
Sbjct: 23 LNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFE 82
Query: 77 NPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISG 134
+++ +++ N L A Q + L G+ RRA Y +R IM +GA+GVE+ +SG
Sbjct: 83 EGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSG 142
Query: 135 KLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM-PPDAR----- 188
KL G+RAK+++F G + G+P + + L+ GVIG+KV IM P D R
Sbjct: 143 KLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGP 202
Query: 189 ---LPDEIEIIEKPVEEEVSSNE 208
LPD ++I+E +EEV E
Sbjct: 203 RNALPDHVQIVEP--QEEVLPKE 223
>gb|AAB19349.2| (S42658) S3 ribosomal protein [Homo sapiens]
Length = 243
Score = 137 bits (342), Expect = 9e-32
Identities = 74/204 (36%), Positives = 116/204 (56%), Gaps = 11/204 (5%)
Query: 5 RYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRE 64
R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIRE
Sbjct: 9 RKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRE 68
Query: 65 LTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
LT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 69 LTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
Query: 123 NGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV I
Sbjct: 129 SGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKI 188
Query: 183 M---------PPDARLPDEIEIIE 197
M P LPD + I+E
Sbjct: 189 MLPWDPTGKIGPKKPLPDHVSIVE 212
>gi|4506721 ribosomal protein S3 [Homo sapiens] >gi|32532|emb|CAA39248.1|
(X55715) ribosomal protein s3 [Homo sapiens]
Length = 243
Score = 137 bits (341), Expect = 1e-31
Identities = 74/205 (36%), Positives = 117/205 (56%), Gaps = 11/205 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIR
Sbjct: 8 KRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 68 ELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAECLRYKLLGGLAVRRACYGVLRFIM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIE 197
IM P LPD + I+E
Sbjct: 188 IMLPWDPTGKIGPKKPLPDHVSIVE 212
>sp|P79891|RS3_AMBME 40S RIBOSOMAL PROTEIN S3 >gi|1836060|gb|AAB46849.1| (S83098)
ribosomal protein S3 [Ambystoma mexicanum=Mexican
axolotls, embryos, Peptide, 253 aa]
Length = 253
Score = 136 bits (340), Expect = 2e-31
Identities = 73/205 (35%), Positives = 117/205 (56%), Gaps = 11/205 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + + + ++EFL +EL GY G++++ TP T++II A V+G GRRIR
Sbjct: 8 KRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++FG +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 68 ELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+G++G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+KV
Sbjct: 128 ESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIE 197
IM P LPD + I+E
Sbjct: 188 IMLAWDPSGKIGPKKPLPDHVSIVE 212
>pir||T45927 ribosomal protein S3a homolog - Arabidopsis thaliana
>gi|7630007|emb|CAB88349.1| (AL132960) ribosomal protein
S3a homolog [Arabidopsis thaliana]
Length = 249
Score = 134 bits (334), Expect = 8e-31
Identities = 75/211 (35%), Positives = 120/211 (56%), Gaps = 12/211 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 8 KRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFG--LENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F +++ ++ +++ N L A QA + L G+ RRA Y +R +M
Sbjct: 68 ELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL RAKS++F GY+ G P + + LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIEKPVEEE 203
+M P LPD + II P EEE
Sbjct: 188 VMLDWDPKGISGPKTPLPD-VVIIHSPKEEE 217
>sp|P48153|RS3_MANSE 40S RIBOSOMAL PROTEIN S3 >gi|527680|gb|AAB05575.1| (U12708)
ribosomal protein S3 [Manduca sexta]
Length = 243
Score = 133 bits (331), Expect = 2e-30
Identities = 69/184 (37%), Positives = 111/184 (59%), Gaps = 2/184 (1%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + V + ++EFL +EL GY G++++ TP +++II A V+G GRRIR
Sbjct: 9 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIR 68
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F + +++ +++ L A QA + L G+ RRA Y +R IM
Sbjct: 69 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 128
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GARG E+ +SGKL G+RAKS++F G + G+P V+ LL+ GV+G+KV
Sbjct: 129 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 188
Query: 182 IMPP 185
IM P
Sbjct: 189 IMLP 192
>sp|O60128|RS3_SCHPO 40S RIBOSOMAL PROTEIN S3 >gi|7489988|pir||T39606 40s ribosomal
protein s3 - fission yeast (Schizosaccharomyces pombe)
>gi|3133108|emb|CAA19033.1| (AL023554) 40s ribosomal
protein s3. [Schizosaccharomyces pombe]
Length = 249
Score = 132 bits (330), Expect = 2e-30
Identities = 73/210 (34%), Positives = 120/210 (56%), Gaps = 8/210 (3%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + V ++EF +EL GY G +++ TP +++II A + V+G GRRIR
Sbjct: 10 KRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIR 69
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F +++ ++++N L A Q + L G+ RRAAY +R +M
Sbjct: 70 ELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVM 129
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
GA+G E+ ISGKL RAKS++F G++ G PA + LL+ GV+GVKV
Sbjct: 130 EAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVK 189
Query: 182 IMPPDAR------LPDEIEIIEKPVEEEVS 205
IM P+ + LPD + +++ EE ++
Sbjct: 190 IMLPEPKTRQKKSLPDIVVVLDPKEEEPIT 219
>gb|AAD24852.1|AC007071_24 (AC007071) 40S ribosomal protein; contains C-terminal domain
[Arabidopsis thaliana]
Length = 250
Score = 132 bits (329), Expect = 3e-30
Identities = 76/218 (34%), Positives = 123/218 (55%), Gaps = 12/218 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 8 KRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFG--LENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F +++ ++ +++ N L A QA + L G+ RRA Y +R +M
Sbjct: 68 ELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL RAKS++F GY+ G P + + LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVK 187
Query: 182 IM---------PPDARLPDEIEIIEKPVEEEVSSNEAE 210
IM P LPD + II P ++ V S A+
Sbjct: 188 IMLDWDPTGKSGPKTPLPD-VVIIHAPKDDVVYSAPAQ 224
>dbj|BAB08712.1| (AB015477) 40S ribosomal protein S3 [Arabidopsis thaliana]
Length = 248
Score = 131 bits (327), Expect = 5e-30
Identities = 75/212 (35%), Positives = 119/212 (55%), Gaps = 12/212 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 8 KRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIR 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F +++ +++ N L A QA + L G+ RRA Y +R +M
Sbjct: 68 ELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL RAKS++F GY+ G P + + LL+ GV+G+KV
Sbjct: 128 ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVK 187
Query: 182 IM---------PPDARLPDEIEIIEKPVEEEV 204
IM P LPD + II P E++V
Sbjct: 188 IMLDWDPKGKQGPMTPLPD-VVIIHTPKEDDV 218
>gb|AAA35010.1| (L31405) ribosomal protein S3 [Saccharomyces cerevisiae]
Length = 240
Score = 129 bits (320), Expect = 3e-29
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R + + V ++EF +EL GY G++++ TP T+VII A V+G GRRI
Sbjct: 8 KRKLVADGVNYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRIN 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F I + + +++ L+A QA + L G+ RRAAY +R +M
Sbjct: 68 ELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL RAK+++F G+L G P + L++ GV+G+KV
Sbjct: 128 ESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVK 187
Query: 182 IMPPDAR-------LPDEIEIIEKPVEEE 203
IM A+ LPD + IIE P EEE
Sbjct: 188 IMRDPAKSRTGPKALPDAVTIIE-PKEEE 215
>gi|6324151 Ribosomal protein S3 (rp13) (YS3); Rps3p [Saccharomyces cerevisiae]
>gi|1173255|sp|P05750|RS3_YEAST 40S RIBOSOMAL PROTEIN S3
(YS3) (RP13) >gi|626906|pir||S48510 ribosomal protein
S3.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|457164|dbj|BAA04973.1| (D25285) ribosomal protein
YS3 [Saccharomyces cerevisiae]
>gi|1302158|emb|CAA96070.1| (Z71454) ORF YNL178w
[Saccharomyces cerevisiae] >gi|1463121|gb|AAC49380.1|
(U34347) ribosomal protein S3 [Saccharomyces cerevisiae]
Length = 240
Score = 127 bits (317), Expect = 8e-29
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
+R + + V ++EF +EL GY G++++ TP T+VII A V+G GRRI
Sbjct: 8 KRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRIN 67
Query: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
ELT +++++F I + + +++ L+A QA + L G+ RRAAY +R +M
Sbjct: 68 ELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVM 127
Query: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181
+GA+G E+ +SGKL RAK+++F G+L G P + L++ GV+G+KV
Sbjct: 128 ESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVK 187
Query: 182 IMPPDAR-------LPDEIEIIEKPVEEE 203
IM A+ LPD + IIE P EEE
Sbjct: 188 IMRDPAKSRTGPKALPDAVTIIE-PKEEE 215
>gb|AAB36959.1| (U78756) RpgG [Dictyostelium discoideum]
Length = 218
Score = 116 bits (288), Expect = 2e-25
Identities = 65/185 (35%), Positives = 108/185 (58%), Gaps = 3/185 (1%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRR-AGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRI 62
+R F+ + V ++E +E + GY G+++K +P T++II A+ V+G RRI
Sbjct: 10 KRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRI 69
Query: 63 RELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAI 120
+EL +++++F + + + ++I N L A QA + L G+ R+A YA + I
Sbjct: 70 QELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQI 129
Query: 121 MSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKV 180
M+ GA+G E+ +SGKL +RAKS++F GY+ K G P++ + LL+ G +GVKV
Sbjct: 130 MTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKV 189
Query: 181 AIMPP 185
AIM P
Sbjct: 190 AIMLP 194
>gb|AAF16402.1| (AF207603) ribosomal protein RPS3 [Musca domestica]
Length = 165
Score = 115 bits (286), Expect = 3e-25
Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 32 GLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPY 89
G++++ TP T++II A V+G GRRIRELT +++++F E +I++ +++
Sbjct: 3 GVEVRVTPARTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFSFEPGRIELYAEKVATRG 62
Query: 90 LNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQG 149
L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL G+RAKS++F G
Sbjct: 63 LCAIAQAESLRYKLTGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDG 122
Query: 150 YLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPP 185
+ G+P V LL+ GV+G+KV IM P
Sbjct: 123 LMIHSGDPCNDYVETATRHVLLRQGVLGIKVKIMLP 158
>pir||E75534 ribosomal protein S3 - Deinococcus radiodurans (strain R1)
>gi|6457991|gb|AAF09898.1|AE001892_9 (AE001892)
ribosomal protein S3 [Deinococcus radiodurans]
Length = 249
Score = 104 bits (257), Expect = 8e-22
Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 9/170 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
I + + K+L AG ++I++ VII AA PG VIG+GG I+EL +ER
Sbjct: 39 IRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERLVSAG 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
++V EI NP ++A + A+RIA+ +ER FRRA A + +M +GARGV++ +SG+L
Sbjct: 99 TVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILSGRL 158
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G E+A++ + +G + P TL + G A A G++G+KV +
Sbjct: 159 GGAEQARTEKVLEGRV-----PLHTLRADIDYGTALARTTYGILGIKVLV 203
>pdb|1FJF|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit >gi|10835587|pdb|1FJG|C Chain C, Structure Of
The Thermus Thermophilus 30s Ribosomal Subunit In
Complex With The Antibiotics Streptomycin, Spectinomycin
And Paromomycin
Length = 239
Score = 102 bits (252), Expect = 3e-21
Identities = 66/175 (37%), Positives = 101/175 (57%), Gaps = 10/175 (5%)
Query: 12 VKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILER 71
+++ I LEKEL AG +DI++ V + A PG VIGRGG RIR L L +
Sbjct: 34 LEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAK 93
Query: 72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
G +N ++VQE++NP L+A + A R+A+ +ER RRA A++ +M +GA+G ++
Sbjct: 94 LTG-KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVI 152
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+SG++ G E+A++ QG + P TL + G+A A GV+GVK I
Sbjct: 153 VSGRIGGAEQARTEWAAQGRV-----PLHTLRANIDYGFALARTTYGVLGVKAYI 202
>sp|Q9ZJR9|RS3_HELPJ 30S RIBOSOMAL PROTEIN S3 >gi|7440136|pir||A71835 ribosomal protein
S3 - Helicobacter pylori (strain J99)
>gi|4155825|gb|AAD06799.1| (AE001547) 30S RIBOSOMAL
PROTEIN S3 [Helicobacter pylori J99]
Length = 234
Score = 96.0 bits (235), Expect = 3e-19
Identities = 64/198 (32%), Positives = 111/198 (55%), Gaps = 18/198 (9%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
I +FL+KEL AG + I++ +V + AA PG +IG+ G I ++ L+ E
Sbjct: 39 IRKFLKKELYYAGVSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKE 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
I+++E+K P +A++ A +A LE+ + FRRA M+A + +GA+G+++R+SG+L
Sbjct: 99 -VSINIKEVKRPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETLVSK---GYAQALLKLGVIGVKVAIMPPDARLPDE 192
G E A++ + +G + P TL +K G+A+A+ G+IGVKV I +
Sbjct: 158 AGAEIARTEWYMEGRV-----PLHTLRAKIDYGFAEAMTVYGIIGVKVWIF--------K 204
Query: 193 IEIIEKPVEEEVSSNEAE 210
E+++K ++ E E
Sbjct: 205 GEVLQKGIQFEKKEEAKE 222
>sp|P44372|RS3_HAEIN 30S RIBOSOMAL PROTEIN S3 >gi|1075272|pir||B64093 ribosomal protein
S3 - Haemophilus influenzae (strain Rd KW20)
>gi|1573793|gb|AAC22442.1| (U32761) ribosomal protein S3
(rpS3) [Haemophilus influenzae Rd]
Length = 235
Score = 92.4 bits (226), Expect = 4e-18
Identities = 62/170 (36%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ +FL KEL A + I++ +V I A PG VIG+ G + +L + + G+
Sbjct: 39 VRKFLNKELASASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGVP 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
QI++ E+K P L+AK+ A IA LER + FRRA A+++ M GA+G+++ +SG+L
Sbjct: 99 -AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G E A+S + +G + P TL + A+A GVIGVKV I
Sbjct: 158 GGAEIARSEWYREGRV-----PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>sp|P56010|RS3_HELPY 30S RIBOSOMAL PROTEIN S3 >gi|7440130|pir||A64684 ribosomal protein
S3 - Helicobacter pylori (strain 26695)
>gi|2314475|gb|AAD08352.1| (AE000633) ribosomal protein
S3 (rps3) [Helicobacter pylori 26695]
Length = 234
Score = 92.4 bits (226), Expect = 4e-18
Identities = 63/198 (31%), Positives = 111/198 (55%), Gaps = 18/198 (9%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
I +FL+KEL AG + I++ +V + AA PG +IG+ G I ++ L+ E
Sbjct: 39 IRKFLKKELYYAGVSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKDGLKTLIKKE 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
I+++E+K+P +A++ A +A LE+ + FRRA M+A + +GA+G+++ +SG+L
Sbjct: 99 -VSINIKEVKHPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALKSGAKGIKVCVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETLVSK---GYAQALLKLGVIGVKVAIMPPDARLPDE 192
G E A++ + +G + P TL +K G+A+A+ G+IGVKV I +
Sbjct: 158 AGAEIARTEWYMEGRV-----PLHTLRAKIDYGFAEAMTVYGIIGVKVWIF--------K 204
Query: 193 IEIIEKPVEEEVSSNEAE 210
E+++K ++ E E
Sbjct: 205 GEVLQKGIQFEKKEEAKE 222
>sp|P55827|RS3_ACTAC 30S RIBOSOMAL PROTEIN S3 >gi|1841328|dbj|BAA10953.1| (D64071)
ribosomal protein S3 [Actinobacillus
actinomycetemcomitans]
Length = 235
Score = 91.7 bits (224), Expect = 6e-18
Identities = 62/170 (36%), Positives = 94/170 (54%), Gaps = 10/170 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ +FL KEL A + I++ +V I A PG VIG+ G + +L + + G+
Sbjct: 39 VRQFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVP 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
QI++ E+K P L+AK+ A IA LER + FRRA A++ M GA+G+++ +SG+L
Sbjct: 99 -AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G E A+S + +G + P TL + A+A GVIGVKV I
Sbjct: 158 GGAEIARSEWYREGRV-----PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>pir||A81665 ribosomal protein S3 TC0809 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190837|gb|AAF39612.1| (AE002347)
ribosomal protein S3 [Chlamydia muridarum]
Length = 224
Score = 91.3 bits (223), Expect = 8e-18
Identities = 60/175 (34%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 12 VKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILER 71
++++ I EFL+K+ G G +K+ +V I A PG VIG+ G + L L++
Sbjct: 34 IEDVRIREFLKKKPSCQGAAGFVVKRMSGKIEVTIHTARPGLVIGKKGAEVESLKAELKK 93
Query: 72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
G ++ +++ E+K P LNA++ A IA+ +ER + FRRA A++++M GA GV+++
Sbjct: 94 LTG-KDVWVEIAEVKRPELNAQLVADGIAKQIERRVSFRRAMKKALQSVMDAGALGVKVQ 152
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+SG+L G E A+S + G + P TL + A A G+IG+KV I
Sbjct: 153 VSGRLAGAEIARSEWYKNGRV-----PLHTLRADIDYATASAETTYGIIGIKVWI 202
>pir||G83115 30S ribosomal protein S3 PA4257 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950474|gb|AAG07645.1|AE004841_23
(AE004841) 30S ribosomal protein S3 [Pseudomonas
aeruginosa]
Length = 228
Score = 90.9 bits (222), Expect = 1e-17
Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 10/173 (5%)
Query: 14 EMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQF 73
++ + E+L+ +L+ A +DI + ++ I A PG VIG+ G + +L + L +Q
Sbjct: 36 DLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQM 95
Query: 74 GLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRIS 133
G+ I+++EI+ P L+A + A +AQ LER + FRRA A++ M GA+G++I++S
Sbjct: 96 GVP-VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVS 154
Query: 134 GKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G+L G E A++ + +G + P TL + +A GVIGVKV I
Sbjct: 155 GRLGGAEIARTEWYREGRV-----PLHTLRADIDYATYEAHTTYGVIGVKVWI 202
>sp|Q9ZI44|RS3_AQUPY 30S RIBOSOMAL PROTEIN S3 >gi|4165871|gb|AAD08791.1| (AF040100)
ribosomal protein S3 [Aquifex pyrophilus]
Length = 231
Score = 89.7 bits (219), Expect = 2e-17
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 10/202 (4%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I +++K + AG ++I++ ++ I A P VIGR G+ + L + +ER
Sbjct: 35 EDLKIKNYIKKRYKVAGVSKVEIERIVDKVRIKIHTAKPAIVIGRRGQEVDRLKKTIERM 94
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
+ I V E+K P L+A++ A IA +ER + RRA A+ + G +GV++++
Sbjct: 95 LPGKEISISVLEVKVPELDAQLVAEDIALQIERRVSHRRAMKRAIDNALKAGQKGVKVQV 154
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPDAR 188
G++ G RA+ F G + P +TL + G+A A K G++ VKV I D
Sbjct: 155 KGRIGGAARARKEWFLVGRM-----PLQTLRADIDYGFATAYTKYGILSVKVWIYKGDVL 209
Query: 189 LPDEIEIIEKPVEEEVSSNEAE 210
+ EI++K +EEE+ E
Sbjct: 210 KGGKEEILKK-IEEEIKQAAKE 230
>prf||1404256A ribosomal protein HS4 [Halobacterium halobium]
Length = 83
Score = 89.3 bits (218), Expect = 3e-17
Identities = 41/83 (49%), Positives = 59/83 (70%)
Query: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
MA E FI + ++ IDEF +EL RAGYG +++ TP+G ++++ A PG VIG+GG+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGSMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 61 RIRELTRILERQFGLENPQIDVQ 83
IR++T LE +F LE+PQIDVQ
Sbjct: 61 NIRKITTQLEERFDLEDPQIDVQ 83
>sp|O84527|RS3_CHLTR 30S RIBOSOMAL PROTEIN S3 >gi|7440124|pir||H71506 probable S3
ribosomal protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328959|gb|AAC68123.1| (AE001323) S3
Ribosomal Protein [Chlamydia trachomatis]
Length = 224
Score = 88.5 bits (216), Expect = 5e-17
Identities = 59/175 (33%), Positives = 98/175 (55%), Gaps = 10/175 (5%)
Query: 12 VKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILER 71
++++ I EFL+K+ G G +K+ +V I A PG VIG+ G + L L++
Sbjct: 34 IEDVKIREFLKKKPSCQGAAGFVVKRMSGKIEVTIHTARPGLVIGKKGAEVESLKAELKK 93
Query: 72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
++ +++ E+K P LNA++ A IA+ +ER + FRRA A++++M GA GV+++
Sbjct: 94 LTD-KDVWVEIAEVKRPELNAQLVADGIAKQIERRVSFRRAMKKALQSVMDAGALGVKVQ 152
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+SG+L G E A+S + G + P TL + A A G+IG+KV I
Sbjct: 153 VSGRLAGAEIARSEWYKNGRV-----PLHTLRADIDYATASAETTYGIIGIKVWI 202
>gb|AAC36521.1| (U89414) ribosomal protein S3 [Mus musculus]
Length = 123
Score = 87.4 bits (213), Expect = 1e-16
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 62 IRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRA 119
IRELT +++++FG +++ +++ L A QA + L G+ RRA Y +R
Sbjct: 1 IRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 60
Query: 120 IMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVK 179
IM +GA+G E+ +SGKL G+RAKS++F G + G+P V LL+ GV+G+K
Sbjct: 61 IMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIK 120
Query: 180 VAI 182
V I
Sbjct: 121 VKI 123
>sp|Q9Z7R3|RS3_CHLPN 30S RIBOSOMAL PROTEIN S3 >gi|7440137|pir||C72055 S3 ribosomal
protein - Chlamydophila pneumoniae (strain CWL029)
>gi|4376939|gb|AAD18780.1| (AE001647) S3 Ribosomal
Protein [Chlamydophila pneumoniae CWL029]
Length = 223
Score = 87.4 bits (213), Expect = 1e-16
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query: 12 VKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILER 71
++++ I +FL K+ G G +++ +V I A PG VIG+ G + L L
Sbjct: 34 IEDVRIRQFLRKKPSCQGAAGFVVRRMSGKIEVTIQTARPGLVIGKKGAEVDLLKEELRA 93
Query: 72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
G E +++ EIK P LNAK+ A IA+ +ER + FRRA AM+++M GA GV+I+
Sbjct: 94 LTGKE-VWLEIAEIKRPELNAKLVADNIARQIERRVSFRRAMKKAMQSVMDAGAVGVKIQ 152
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+SG+L G E A+S + G + P TL + A A G+IG+KV I
Sbjct: 153 VSGRLAGAEIARSEWYKNGRV-----PLHTLRADIDYATACAETTYGIIGIKVWI 202
>pir||F81611 ribosomal protein S3 CP0106 [imported] - Chlamydophila pneumoniae
(strain AR39) >gi|7189040|gb|AAF37989.1| (AE002173)
ribosomal protein S3 [Chlamydophila pneumoniae AR39]
>gi|8979013|dbj|BAA98848.1| (AP002547) S3 ribosomal
protein [Chlamydophila pneumoniae J138]
Length = 223
Score = 87.4 bits (213), Expect = 1e-16
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Query: 12 VKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILER 71
++++ I +FL K+ G G +++ +V I A PG VIG+ G + L L
Sbjct: 34 IEDVRIRQFLRKKPSCQGAAGFVVRRMSGKIEVTIQTARPGLVIGKKGAEVDLLKEELRA 93
Query: 72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
G E +++ EIK P LNAK+ A IA+ +ER + FRRA AM+++M GA GV+I+
Sbjct: 94 LTGKE-VWLEIAEIKRPELNAKLVADNIARQIERRVSFRRAMKKAMQSVMDAGAVGVKIQ 152
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+SG+L G E A+S + G + P TL + A A G+IG+KV I
Sbjct: 153 VSGRLAGAEIARSEWYKNGRV-----PLHTLRADIDYATACAETTYGIIGIKVWI 202
>sp|P46172|RS3_BUCAK 30S RIBOSOMAL PROTEIN S3 >gi|632235|pir||PC2191 ribosomal protein
S3 - pea aphid symbiont bacterium (fragment)
>gi|710611|dbj|BAA06581.1| (D31786) ribosomal protein S3
[Acyrthosiphon kondoi endosymbiont]
Length = 205
Score = 86.2 bits (210), Expect = 3e-16
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ +FL KEL +A + I++ +V I A PG VIG+ G + +L +++ G+
Sbjct: 12 VRQFLAKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVP 71
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
QI++ E++ P L+AK+ A I LER + FRRA A++ M GA+G+++ +SG+L
Sbjct: 72 -AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVDVSGRL 130
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G E A++ + +G + P TL + ++A GVIGVKV I
Sbjct: 131 GGAEIARTEWYREGRV-----PLHTLRADIDYNTSEAHTTYGVIGVKVWI 175
>sp|P02352|RS3_ECOLI 30S RIBOSOMAL PROTEIN S3 >gi|70862|pir||R3EC3 ribosomal protein S3
[validated] - Escherichia coli >gi|42832|emb|CAA26466.1|
(X02613) ribosomal protein S3 (rpsC) (aa 1-233)
[Escherichia coli] >gi|606248|gb|AAA58111.1| (U18997)
30S ribosomal subunit protein S3 [Escherichia coli]
>gi|1789710|gb|AAC76339.1| (AE000408) 30S ribosomal
subunit protein S3 [Escherichia coli K12]
Length = 233
Score = 85.8 bits (209), Expect = 3e-16
Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ ++L KEL +A + I++ +V I A PG VIG+ G + +L +++ G+
Sbjct: 39 VRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVP 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
QI++ E++ P L+AK+ A I LER + FRRA A++ M GA+G+++ +SG+L
Sbjct: 99 -AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G E A++ + +G + P TL + ++A GVIGVKV I
Sbjct: 158 GGAEIARTEWYREGRV-----PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>pir||F81231 30S ribosomal protein S3 NMB0148 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225366|gb|AAF40606.1| (AE002373) 30S ribosomal
protein S3 [Neisseria meningitidis MC58]
>gi|7378895|emb|CAB83438.1| (AL162752) 30S ribosomal
protein S3 [Neisseria meningitidis Z2491]
Length = 230
Score = 85.8 bits (209), Expect = 3e-16
Identities = 57/168 (33%), Positives = 95/168 (55%), Gaps = 10/168 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ +L ++L A G + I++ ++ I +A PG VIG+ G I L R L+ G+
Sbjct: 39 VRNYLRQKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVP 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
++++EI+ P L+A++ A IAQ LE+ + FRRA AM+ M +GA+G++I SG+L
Sbjct: 99 -VHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKV 180
G + A+S + +G + P TL V ++A GV+G+KV
Sbjct: 158 NGADIARSEWYREGRV-----PLHTLRANVDYATSEAHTTYGVLGLKV 200
>emb|CAB82076.1| (AL161803) 30S ribosomal protein S3 [Streptomyces coelicolor A3(2)]
Length = 277
Score = 85.0 bits (207), Expect = 6e-16
Identities = 60/184 (32%), Positives = 96/184 (51%), Gaps = 9/184 (4%)
Query: 9 REAVKE-MLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTR 67
++ VKE + I L + RAG ++I++T +V I A PG VIGR G ++
Sbjct: 29 KDYVKEDVAIRRMLTSGMERAGISKVEIERTRDRVRVDIHTARPGIVIGRRGAEADKIRG 88
Query: 68 ILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARG 127
LE+ G + Q+++ E+K+P +A++ A +A+ L + FRRA +M+ M GA+G
Sbjct: 89 QLEKLTG-KQVQLNILEVKSPETDAQLVAQAVAEQLSSRVSFRRAMRKSMQGTMKAGAKG 147
Query: 128 VEIRISGKLTGERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMP 184
++I+ G+L G FY+ + P TL V G+ +A G IGVKV I
Sbjct: 148 IKIQCGGRLGGAEMSRSEFYR----EGRVPLHTLRANVDYGFFEAKTTFGRIGVKVWIYK 203
Query: 185 PDAR 188
D +
Sbjct: 204 GDVK 207
>sp|Q9Z9K8|RS3_BACHD 30S RIBOSOMAL PROTEIN S3 >gi|11275286|pir||T44389 ribosomal protein
S3 [imported] - Bacillus halodurans
>gi|4512410|dbj|BAA75277.1| (AB017508) rpsC homologue
(identity of 87% to B. subtilis ) [Bacillus halodurans]
>gi|10172752|dbj|BAB03859.1| (AP001507) ribosomal
protein S3 (BS3) [Bacillus halodurans]
Length = 219
Score = 84.7 bits (206), Expect = 8e-16
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 10/174 (5%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I E++E L+ A ++I++ + I A PG VIG+GG + L + L
Sbjct: 34 EDIKIREYIENRLKDASVSKIEIERAANRVNITISTAKPGMVIGKGGSEVEALRKALNEL 93
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
G + I++ E+K L+AK+ A IA+ LE I FRRA A++ M GA+G++ ++
Sbjct: 94 TG-KRVHINIFEVKQADLDAKLVAENIARQLENRISFRRAMKQAIQRTMRAGAQGIKTQV 152
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
SG+L G + A++ + +G + P TL + G A+A G +GVK+ I
Sbjct: 153 SGRLGGADIARAEHYSEGTV-----PLHTLRADIDYGTAEADTTYGKLGVKIWI 201
>emb|CAB92940.1| (AJ290932) putative 40S ribosomal protein S3 [Plasmodium
falciparum]
Length = 110
Score = 84.7 bits (206), Expect = 8e-16
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 105 RGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSK 164
+G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GYL G P++ V+
Sbjct: 1 KGLAVRRACYGVLRHIMESGAKGCEVIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNT 60
Query: 165 GYAQALLKLGVIGVKVAIMPPDA---------RLPDEIEIIE 197
A LK GV+G+KV IM P A LPD I ++E
Sbjct: 61 ATRSAQLKQGVLGIKVKIMLPTAIDTRTGLTSILPDNISVLE 102
>sp|O52338|RS3_MYCGA 30S RIBOSOMAL PROTEIN S3 >gi|2766509|gb|AAB95393.1| (AF036708)
ribosomal protein S3 [Mycoplasma gallisepticum]
Length = 263
Score = 84.3 bits (205), Expect = 1e-15
Identities = 51/173 (29%), Positives = 92/173 (52%), Gaps = 4/173 (2%)
Query: 12 VKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILER 71
V++ I +L K+ A +DI++T +V I+A+ PG ++G+ I+ + + +
Sbjct: 35 VQDEKIRNYLFKKFHSAFISNVDIERTQTSIRVFIYASQPGIILGKEAANIKVILLAINK 94
Query: 72 QFGLE-NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEI 130
G +DV E+ NP L+AK+ A +A A+E R A A++ ++ GA+G+++
Sbjct: 95 IVGRHIKVDVDVLEVGNPSLSAKIVARELADAIENRTPLRTAMRQALKRVLKAGAKGIKV 154
Query: 131 RISGKLTG-ERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAI 182
+SG+L G E A+ + +G + + T + +A + GVIGVKV I
Sbjct: 155 LVSGRLNGVEIARDKMYIEGNVTL--STLRTDIDYALEEAQMSYGVIGVKVWI 205
>pir||H82058 ribosomal protein S3 VC2590 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657177|gb|AAF95731.1| (AE004326)
ribosomal protein S3 [Vibrio cholerae]
Length = 233
Score = 83.1 bits (202), Expect = 2e-15
Identities = 57/170 (33%), Positives = 92/170 (53%), Gaps = 10/170 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ ++L KEL A + I++ +V I A PG VIG+ G + +L + + G+
Sbjct: 39 VRQYLSKELANASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVP 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
QI++ E++ P L+ ++ A IA LER + FRRA A++ M GA+G+++ +SG+L
Sbjct: 99 -AQINIAEVRKPELDGQLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
G E A+S + +G + P TL + + A GVIGVKV I
Sbjct: 158 GGAEIARSEWYREGRV-----PLHTLRADIDYATSSAHTTYGVIGVKVWI 202
>sp|P57585|RS3_BUCAI 30S RIBOSOMAL PROTEIN S3 >gi|10039177|dbj|BAB13211.1| (AP001119)
30S ribosomal protein S3 [Buchnera sp. APS]
Length = 233
Score = 83.1 bits (202), Expect = 2e-15
Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 11/188 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
+ +FL K L +A + I++ +V I+ A PG VIG+ G + +L + + G+
Sbjct: 39 VRQFLMKTLEKASISRIIIERPAKSIRVTIYTARPGIVIGKKGEDVEKLRISIAKITGVP 98
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
QI++ E++ P L+AK+ + I LER + FRRA +++ M GA+G+++ +SG+L
Sbjct: 99 -VQINISEVRKPELDAKLVSDSITSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPDARLPDE 192
G E A+ + +G + P TL + ++A GVIGVKV I + E
Sbjct: 158 GGAEIARREWYREGRV-----PLHTLRANIDYSISEAHTTYGVIGVKVWIFKGEILGGME 212
Query: 193 -IEIIEKP 199
+E ++KP
Sbjct: 213 TVERLDKP 220
>sp|P23309|RS3_BACST 30S RIBOSOMAL PROTEIN S3 (BS2) >gi|80223|pir||S10613 ribosomal
protein S3 - Bacillus stearothermophilus
>gi|580921|emb|CAA38740.1| (X54994) ribosomal protein S3
[Bacillus stearothermophilus]
Length = 218
Score = 82.7 bits (201), Expect = 3e-15
Identities = 59/174 (33%), Positives = 92/174 (51%), Gaps = 10/174 (5%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I E++ K L+ A ++I++ V I A PG VIG+GG + L + L +
Sbjct: 34 EDLKIREYINKRLQDAAVSRVEIERAANRVNVTIHTAKPGMVIGKGGSEVEALRKALTQL 93
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
G + I++ EIK P L+AK+ A IA+ LE + FRRA A++ M G +GV+ +
Sbjct: 94 TG-KREHINIVEIKKPDLDAKLVAENIARQLENRVSFRRAQKQAIQRAMRPGRKGVKTMV 152
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+L G E A+S + +G + P TL + A+A G IGVKV I
Sbjct: 153 VRRLGGAEIARSEHYSEGTV-----PLHTLRADIDYATAEADTTYGKIGVKVWI 201
>sp|O66437|RS3_AQUAE 30S RIBOSOMAL PROTEIN S3 >gi|7440127|pir||B70301 ribosomal protein
S03 - Aquifex aeolicus >gi|2982772|gb|AAC06398.1|
(AE000669) ribosomal protein S03 [Aquifex aeolicus]
Length = 212
Score = 82.3 bits (200), Expect = 4e-15
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 9/178 (5%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I ++++ + AG ++I++ +V I A P VIGR G+ + L + LE+
Sbjct: 35 EDLKIKNYIKERYKVAGVSKVEIERIVDKVRVKIHTARPAIVIGRRGQEVENLKKTLEKM 94
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
+ I V E++ P L+A++ A IA +ER + RRA A+ + GA+GV++++
Sbjct: 95 LPGKEITISVVEVRVPELDAQLVAQDIATQIERRVSHRRAMKRAIDNALKAGAKGVKVQV 154
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPD 186
G++ G E A+ F G + P +TL + G+A A K G++ VKV I D
Sbjct: 155 KGRIGGAELARKEWFLVGRM-----PLQTLRADIDYGFATAYTKYGILSVKVWIYKGD 207
>gb|AAF82383.1|AF281313_1 (AF281313) ribosomal protein S3; RPS3 [Homo sapiens]
Length = 158
Score = 81.5 bits (198), Expect = 7e-15
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 90 LNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQG 149
L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL G+RAKS++F G
Sbjct: 11 LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDG 70
Query: 150 YLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIIE 197
+ G+P V LL+ GV+G+KV IM P LPD + I+E
Sbjct: 71 LMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVE 127
>sp|P73314|RS3_SYNY3 30S RIBOSOMAL PROTEIN S3 >gi|7440129|pir||S77496 ribosomal protein
S3 - Synechocystis sp. (strain PCC 6803)
>gi|1652421|dbj|BAA17343.1| (D90905) 30S ribosomal
protein S3 [Synechocystis sp.]
Length = 240
Score = 81.1 bits (197), Expect = 9e-15
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
I +++EK L AG + I++ ++ I A PG V+GRGG I +L L++ G
Sbjct: 39 IRQYIEKTLNNAGISDIRIERKAEQIELGIHTARPGVVVGRGGSGIEQLREGLQKLLGSA 98
Query: 77 NP-QIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGK 135
+++V E+ N +A + A I Q LER + FRR A++ +G++I++SG+
Sbjct: 99 RQIRVNVIEVPNADADAALMAEYIGQQLERRVSFRRVVRQALQRAERAEVKGIKIQVSGR 158
Query: 136 LTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPDARLPD 191
L G E A++ +G + P TL + Y AL G++G+KV I +
Sbjct: 159 LNGAEIARTEWVREGRV-----PLHTLRADIDYAYRTALTTYGILGIKVWIFKGEVIPGQ 213
Query: 192 EIEIIEKPVEEEVSSNEAE 210
E I+ P + S +
Sbjct: 214 EAAIVAPPSQPRRKSRRQQ 232
>pir||F82717 30S ribosomal protein S3 XF1158 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106122|gb|AAF83968.1|AE003950_18
(AE003950) 30S ribosomal protein S3 [Xylella fastidiosa]
Length = 239
Score = 80.4 bits (195), Expect = 2e-14
Identities = 58/177 (32%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 14 EMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQF 73
++ + + L K++ +AG + I++ V + A PG VIG+ G I L + +
Sbjct: 36 DLKVRQVLRKKMSQAGISKILIERPSNTACVSMHVARPGVVIGKRGEDIEMLRKQVSDIM 95
Query: 74 GLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRIS 133
G+ + I+V E++ P L+A++ A +AQ LER I FRRA ++ M GA G++I ++
Sbjct: 96 GV-SVHINVIEVRKPELDAQLVAESVAQQLERRIMFRRAMKRSVGNAMRLGALGIKISVA 154
Query: 134 GKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPD 186
G+L G E A+S + +G + P +TL + G+++A GV GVKV I D
Sbjct: 155 GRLNGAEIARSEWYREGRV-----PLQTLRADIGYGFSEAHTNYGVTGVKVLIYHGD 206
>sp|Q9WW37|RS3_STRPN 30S RIBOSOMAL PROTEIN S3 >gi|4927746|gb|AAD33262.1|AF126059_3
(AF126059) RpS3 [Streptococcus pneumoniae]
>gi|4927755|gb|AAD33271.1| (AF126060) RpS3
[Streptococcus pneumoniae] >gi|4927764|gb|AAD33280.1|
(AF126061) RpS3 [Streptococcus pneumoniae]
Length = 208
Score = 80.0 bits (194), Expect = 2e-14
Identities = 55/174 (31%), Positives = 95/174 (53%), Gaps = 10/174 (5%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I +F++KEL A ++I++ V + A PG VIG+GG + L L +
Sbjct: 25 EDLAIRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNKL 84
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
G + I++ EIK P L+A + IA+ LE+ + FRRA A++ M GA+G++ ++
Sbjct: 85 TG-KQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQV 143
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
SG+L G + A++ + +G + P TL + + +A G +GVKV I
Sbjct: 144 SGRLNGADIARAEGYSEGTV-----PLHTLRADIDYAWEEADTTYGKLGVKVWI 192
>pir||A81268 30S ribosomal protein S3 Cj1701c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969116|emb|CAB73687.1|
(AL139079) 30S ribosomal protein S3 [Campylobacter
jejuni]
Length = 233
Score = 79.6 bits (193), Expect = 3e-14
Identities = 58/197 (29%), Positives = 105/197 (52%), Gaps = 18/197 (9%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
I FL+++L AG + +++T +V + AA PG +IG+ G + L + L+ G +
Sbjct: 39 IRAFLKRKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIG-K 97
Query: 77 NPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKL 136
+ I+++E + +A++ A +A LE+ I FRRA ++ GA+G+++ +SG+L
Sbjct: 98 DVNINIKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRL 157
Query: 137 TG-ERAKSVRFYQGYLAKVGNPAETLVSK---GYAQALLKLGVIGVKVAIMPPDARLPDE 192
G E A++ + +G + P TL +K G+A+A G IGVKV I +
Sbjct: 158 GGAEMARTEWYLEGRV-----PLHTLRAKIDYGFAEARTTYGNIGVKVWIF--------K 204
Query: 193 IEIIEKPVEEEVSSNEA 209
E++ K ++ E + A
Sbjct: 205 GEVLHKGMQPEKTEESA 221
>sp|O06048|RS3_MYCBO 30S RIBOSOMAL PROTEIN S3 >gi|2113872|emb|CAA73678.1| (Y13228) rpsC
[Mycobacterium bovis BCG]
Length = 274
Score = 77.6 bits (188), Expect = 1e-13
Identities = 60/182 (32%), Positives = 90/182 (48%), Gaps = 10/182 (5%)
Query: 10 EAVKE-MLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRI 68
E VKE + I L L RAG ++I++T +V I A PG VIGR G +
Sbjct: 30 EYVKEDVAIRRLLSSGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRAD 89
Query: 69 LERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSN-GARG 127
LE+ G + Q+++ E+KNP A++ A +A+ L + FRRA A+++ M +G
Sbjct: 90 LEKLTG-KQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKG 148
Query: 128 VEIRISGKLTGERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMP 184
+ ++ SG+L G FY+ + P TL + G +A G IGVKV I
Sbjct: 149 IRVQCSGRLGGAEMNRSEFYR----EGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYK 204
Query: 185 PD 186
D
Sbjct: 205 GD 206
>sp|P95055|RS3_MYCTU 30S RIBOSOMAL PROTEIN S3 >gi|7440123|pir||F70642 probable ribosomal
protein S3 rpsC - Mycobacterium tuberculosis (strain
H37RV) >gi|1806175|emb|CAB06470.1| (Z84395) rpsC
[Mycobacterium tuberculosis]
Length = 274
Score = 77.6 bits (188), Expect = 1e-13
Identities = 60/182 (32%), Positives = 90/182 (48%), Gaps = 10/182 (5%)
Query: 10 EAVKE-MLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRI 68
E VKE + I L L RAG ++I++T +V I A PG VIGR G +
Sbjct: 30 EYVKEDVAIRRLLSSGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRAD 89
Query: 69 LERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSN-GARG 127
LE+ G + Q+++ E+KNP A++ A +A+ L + FRRA A+++ M +G
Sbjct: 90 LEKLTG-KQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKG 148
Query: 128 VEIRISGKLTGERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMP 184
+ ++ SG+L G FY+ + P TL + G +A G IGVKV I
Sbjct: 149 IRVQCSGRLGGAEMSRSEFYR----EGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYK 204
Query: 185 PD 186
D
Sbjct: 205 GD 206
>gi|11467339 ribosomal protein S3 [Cyanophora paradoxa]
>gi|133926|sp|P23401|RR3_CYAPA CYANELLE 30S RIBOSOMAL
PROTEIN S3 >gi|70868|pir||R3KT3 ribosomal protein S3,
cyanelle - Cyanophora paradoxa cyanelle
>gi|336647|gb|AAA63621.1| (M30487) ribosomal protein s3
[Cyanophora paradoxa] >gi|1016140|gb|AAA81227.1|
(U30821) ribosomal protein S3 [Cyanophora paradoxa]
Length = 219
Score = 77.3 bits (187), Expect = 1e-13
Identities = 62/190 (32%), Positives = 96/190 (49%), Gaps = 10/190 (5%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
++ LI +++EK L AG + I++ ++ + A PG V+GRGGR I L + L+
Sbjct: 35 EDHLIRQYIEKNLSNAGIAQIYIQRKADRIELELRTARPGVVVGRGGRGIEVLRKGLKDL 94
Query: 73 FGLENP-QIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
G + +I+V E+K A + I Q LER + FRR A+ G G++I+
Sbjct: 95 LGEQKQIRINVIEVKQIDAEAALIGEFITQQLERRVAFRRIVRKAITRAQRRGIEGIKIQ 154
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPDA 187
ISG+L G E A+S +G + P +TL + Y +A GV+GVKV I +
Sbjct: 155 ISGRLNGAEIARSEWSREGRV-----PLQTLRAEIDYSYKRAQTIYGVLGVKVWIFKGEV 209
Query: 188 RLPDEIEIIE 197
+ EI E
Sbjct: 210 IPGNPTEISE 219
>gb|AAD27643.1|AF133129_1 (AF133129) ribosomal protein S3 [Meriones unguiculatus]
Length = 128
Score = 77.3 bits (187), Expect = 1e-13
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 110 RRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQA 169
RRA Y +R IM +GA+G E+ +SGKL G+RAKS++F G + G+P V
Sbjct: 1 RRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHV 60
Query: 170 LLKLGVIGVKVAIM---------PPDARLPDEIEIIE 197
LL+ GV+G+KV IM P LPD + I+E
Sbjct: 61 LLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVE 97
>gb|AAC45962.1| (U43929) S3 [Bacillus subtilis]
Length = 218
Score = 76.9 bits (186), Expect = 2e-13
Identities = 55/174 (31%), Positives = 91/174 (51%), Gaps = 10/174 (5%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I E++ K L A ++I++ + I A PG VIG+GG + L + L
Sbjct: 34 EDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSL 93
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
G + I++ EIK L+A++ A IA+ LE + FRRA ++ M GA+GV+ +
Sbjct: 94 TG-KRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMV 152
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
SG+L G + A+S + +G + P TL + ++A G +GVKV I
Sbjct: 153 SGRLGGADIARSEYYSEGTV-----PLHTLRADIDYATSEADTTYGKLGVKVWI 201
>sp|P46772|RS3_THEMA 30S RIBOSOMAL PROTEIN S3 >gi|625510|pir||S40194 ribosomal protein
S3 - Thermotoga maritima (strain MSB8)
>gi|581804|emb|CAA79783.1| (Z21677) ribosomal protein S3
[Thermotoga maritima]
>gi|4982058|gb|AAD36560.1|AE001798_25 (AE001798)
ribosomal protein S3 [Thermotoga maritima]
Length = 209
Score = 76.5 bits (185), Expect = 2e-13
Identities = 55/190 (28%), Positives = 97/190 (50%), Gaps = 10/190 (5%)
Query: 5 RYFIREAVKEMLIDE-----FLEKELRRAGYGGLDIKKTPLGT-KVIIFAANPGYVIGRG 58
++F + KE L+++ ++ + AG + +++ + + A PG +IGR
Sbjct: 21 KWFNEKNYKEWLLEDEEIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRK 80
Query: 59 GRRIRELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMR 118
G I L LER+F I+++EIK P L+A++ A IA +E+ ++ A A+
Sbjct: 81 GSEITSLREELERKFN-RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIM 139
Query: 119 AIMSNGARGVEIRISGKLTG-ERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIG 177
M GA+G+++ ++G+L G E A+ + +G L + ++ G A A K G IG
Sbjct: 140 NAMRKGAQGIKVMVAGRLGGAEIARREWYLRGRLPL--QKIKAIIDYGTATAWTKYGTIG 197
Query: 178 VKVAIMPPDA 187
+KV I DA
Sbjct: 198 IKVWIYKGDA 207
>sp|O83225|RS3_TREPA 30S RIBOSOMAL PROTEIN S3 >gi|7440126|pir||E71355 probable ribosomal
protein S3 (rpsC) - syphilis spirochete
>gi|3322459|gb|AAC65180.1| (AE001202) ribosomal protein
S3 (rpsC) [Treponema pallidum]
Length = 247
Score = 75.7 bits (183), Expect = 4e-13
Identities = 53/161 (32%), Positives = 84/161 (51%), Gaps = 10/161 (6%)
Query: 24 ELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDVQ 83
E + A ++I + P V++ A PG VIG G I ++ ++++ + QI V+
Sbjct: 48 ECKNADIAEVEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN-KKVQIKVK 106
Query: 84 EIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTG-ERAK 142
EIK LNA + A +A+ L + FR+ A M +GA+GV+IR+SG+L G E ++
Sbjct: 107 EIKRMELNAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSR 166
Query: 143 SVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKV 180
+ +G P TL + G+A+A G IGVKV
Sbjct: 167 TEEIKEG-----RTPLHTLRADIDYGFAEAHTTYGSIGVKV 202
>sp|P21465|RS3_BACSU 30S RIBOSOMAL PROTEIN S3 (BS3) (BS2) >gi|7440122|pir||B69699
ribosomal protein S3 (rpsC) - Bacillus subtilis
>gi|786159|dbj|BAA08837.1| (D50302) Ribosomal Protein S3
[Bacillus subtilis] >gi|2632389|emb|CAB11898.1| (Z99104)
ribosomal protein S3 (BS3) [Bacillus subtilis]
Length = 218
Score = 75.3 bits (182), Expect = 5e-13
Identities = 53/173 (30%), Positives = 87/173 (49%), Gaps = 8/173 (4%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I E++ K L A ++I++ + I A PG VIG+GG + L + L
Sbjct: 34 EDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSL 93
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
G + I++ EIK L+A++ A IA+ LE + FRRA ++ M GA+GV+ +
Sbjct: 94 TG-KRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMV 152
Query: 133 SGKLTGERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
SG+L G +Y ++ P TL + ++A G +GVKV I
Sbjct: 153 SGRLGGADIARPEYY----SEGTVPLHTLRADIDYATSEADTTYGKLGVKVWI 201
>sp|O32987|RS3_MYCLE 30S RIBOSOMAL PROTEIN S3 >gi|11275287|pir||T45370 ribosomal protein
S3 [imported] - Mycobacterium leprae
>gi|2344838|emb|CAB11440.1| (Z98756) ribosomal protein
S3 [Mycobacterium leprae]
Length = 281
Score = 75.3 bits (182), Expect = 5e-13
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 10/182 (5%)
Query: 10 EAVKE-MLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRI 68
E VKE + I L L RAG ++I++T +V I A PG VIGR G +
Sbjct: 30 EYVKEDVAIRRLLSTGLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRAD 89
Query: 69 LERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSN-GARG 127
LE+ + Q+++ E+KNP A++ A +A+ L + FRRA A+++ M +G
Sbjct: 90 LEK-LTCKQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKG 148
Query: 128 VEIRISGKLTGERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMP 184
+ ++ SG+L G FY+ + P TL + G +A G IGVKV I
Sbjct: 149 IRVQCSGRLGGAEMSRSEFYR----EGRVPLHTLRADIDYGLHEAKTTFGRIGVKVWIYK 204
Query: 185 PD 186
D
Sbjct: 205 GD 206
>sp|P41205|RS3_MYCPN 30S RIBOSOMAL PROTEIN S3 >gi|2146632|pir||S73986 ribosomal protein
S3 - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674365|gb|AAB96308.1| (AE000061) ribosomal protein
S3 [Mycoplasma pneumoniae]
Length = 273
Score = 73.7 bits (178), Expect = 1e-12
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 26 RRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFG-LENPQIDVQE 84
R A ++I++T V ++AA P ++IG + I+++T+ +++ G N + + E
Sbjct: 49 RNAQVSNVEIERTQATVDVFVYAAQPAFLIGSENKNIQKITKQIKQIIGRTTNLDLTINE 108
Query: 85 IKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTG-ERAKS 143
I +P L+A++ A +A A+E + R A ++ ++ GA G+++ +SG+L G E A+
Sbjct: 109 IGSPMLSARIIARDLANAIEARVPLRTAMRQSLIKVLKAGANGIKVLVSGRLNGAEIARD 168
Query: 144 VRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+ +G + P TL + +A GVIGVKV I
Sbjct: 169 KMYIEGNM-----PLSTLRADIDYALEKAQTTYGVIGVKVWI 205
>sp|P47403|RS3_MYCGE 30S RIBOSOMAL PROTEIN S3 >gi|1361833|pir||D64217 ribosomal protein
S3 - Mycoplasma genitalium >gi|3844751|gb|AAC71375.1|
(U39696) ribosomal protein S3 (rpS3) [Mycoplasma
genitalium]
Length = 268
Score = 73.0 bits (176), Expect = 3e-12
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 26 RRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE-NPQIDVQE 84
R A ++I++T V ++AA P +IG + I+++T++++ G + + + E
Sbjct: 49 RNAQVSNVEIERTQTTVDVYVYAAQPALLIGSENKNIQKITKMIQIIVGRKIKLDLTINE 108
Query: 85 IKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTG-ERAKS 143
I +P L++++ A IA A+E + R A A+ ++ GA G+++ +SG+L G E A+
Sbjct: 109 IGSPMLSSRIIARDIANAIENRVPLRSAMRQALTKVLKAGANGIKVLVSGRLNGAEIARD 168
Query: 144 VRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
+ +G + P TL + + +A G+IGVKV I
Sbjct: 169 KMYIEGNM-----PLSTLRADIDYAFEKAKTTYGIIGVKVWI 205
>sp|O31161|RS3_SPICI 30S RIBOSOMAL PROTEIN S3 >gi|2623862|gb|AAC35870.1| (AF031160)
ribosomal protein S3 [Spiroplasma citri]
Length = 252
Score = 72.6 bits (175), Expect = 3e-12
Identities = 55/187 (29%), Positives = 99/187 (52%), Gaps = 11/187 (5%)
Query: 2 AIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRR 61
A ++ +++ +++ I + L KEL+ A ++I++T + I A G V+G+ G+
Sbjct: 24 AEKQEYVKWLHQDIKIRKALMKELKGASVSKIEIERTKKEIVIFIRTARVGVVLGQEGKN 83
Query: 62 IRELTRILERQFGLENPQ--IDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRA 119
I +L +++ G + I+V EIKNP +A++ A IA+ + FR A++
Sbjct: 84 IAKLVKLVHITIGDRKMEVKINVVEIKNPDTDAQLVANTIAEQIVNRASFRSVQKLAIKK 143
Query: 120 IMSNGARGVEIRISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGV 175
M GA+G++ +SG+L G + A++ + +G + P TL + A+AL G
Sbjct: 144 AMKAGAQGIKTSVSGRLGGVDMARTEGYTKGTV-----PLATLRSDIDFALAEALTTYGQ 198
Query: 176 IGVKVAI 182
IGVKV I
Sbjct: 199 IGVKVWI 205
>gi|11467723 ribosomal protein S3 [Guillardia theta]
>gi|3914822|sp|O46900|RR3_GUITH CHLOROPLAST 30S
RIBOSOMAL PROTEIN S3 >gi|3603048|gb|AAC35709.1|
(AF041468) ribosomal protein S3 [Guillardia theta]
Length = 216
Score = 72.6 bits (175), Expect = 3e-12
Identities = 48/176 (27%), Positives = 93/176 (52%), Gaps = 16/176 (9%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR----ELTRI 68
++ I ++ +EL AG ++I + +V ++ + PG ++GR G I ++ R+
Sbjct: 35 QDFKIRSYINRELEAAGISKIEISRNANQLEVSVYTSRPGIIVGRSGLGIEKIKTDILRL 94
Query: 69 LERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGV 128
L++ + +I+V E+ NP +A + IAQ LE+ + FRRA A++ +G+
Sbjct: 95 LKQDISI---RINVIELTNPDADANLIGEFIAQQLEKRVAFRRATRQAIQKAQRANVQGI 151
Query: 129 EIRISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKV 180
++++SG+L G E A+S +G + P +TL + +A G++G+KV
Sbjct: 152 KVQVSGRLNGAEIARSEWVREGRV-----PLQTLRANIDYATKEAHTTYGILGIKV 202
>sp|P94273|RS3_BORBU 30S RIBOSOMAL PROTEIN S3 >gi|7440133|pir||C70160 ribosomal protein
S3 (rpsC) - Lyme disease spirochete
>gi|2688407|gb|AAC66858.1| (AE001152) ribosomal protein
S3 (rpsC) [Borrelia burgdorferi]
Length = 293
Score = 72.2 bits (174), Expect = 4e-12
Identities = 46/150 (30%), Positives = 83/150 (54%), Gaps = 10/150 (6%)
Query: 35 IKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDVQEIKNPYLNAKV 94
I+ P V+I PG VIG G + ++ ++L ++ + I ++E+K P L+A++
Sbjct: 60 IRNNPQKVTVVIVTPRPGSVIGLKGSNLEKIGQLLTKKIS-KKISIKIKEVKRPELDAQI 118
Query: 95 QAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTG-ERAKSVRFYQGYLAK 153
A IA+ +E +R+ +++ M GA+G++I+I+G+L G E A+S +G +
Sbjct: 119 IANGIAKQVENRASYRKVLKSSLSTSMLKGAQGLKIKIAGRLGGAEIARSFEVKEGRV-- 176
Query: 154 VGNPAETL---VSKGYAQALLKLGVIGVKV 180
P TL + G+++A G+IGVKV
Sbjct: 177 ---PLHTLRANIDYGFSEAQTTYGIIGVKV 203
>sp|Q9ZCR1|RS3_RICPR 30S RIBOSOMAL PROTEIN S3 >gi|7440131|pir||C71671 ribosomal protein
S3 - Rickettsia prowazekii >gi|3861193|emb|CAA15093.1|
(AJ235272) 30S RIBOSOMAL PROTEIN S3 (rpsC) [Rickettsia
prowazekii]
Length = 217
Score = 71.8 bits (173), Expect = 6e-12
Identities = 51/184 (27%), Positives = 96/184 (51%), Gaps = 10/184 (5%)
Query: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVI-IFAANPGYVIGRGGRRI 62
E+++ ++++ I + + K +A + I++ + +I I A P +IG+ G I
Sbjct: 27 EKHYKTLFIQDLKIRDLINKWFNQAQISRVLIERPSNKSIIININAKKPNIIIGKNGTEI 86
Query: 63 RELTRILERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMS 122
+L + +E L+ I++ E++ ++A + A IA LE+ + FR+A A++A
Sbjct: 87 DKLKKAIENMTFLKEVYINIHEVRKFNIDAAIVAQTIAAQLEKRVSFRKAMKTAIQASFK 146
Query: 123 NGARGVEIRISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGV 178
G +G+ + SG+L G E A++ + +G + P TL + A+A+ GVIGV
Sbjct: 147 QGGQGIRVSCSGRLGGAEIARTEWYIEGRM-----PLHTLRADIDYSTAEAITTYGVIGV 201
Query: 179 KVAI 182
KV I
Sbjct: 202 KVWI 205
>sp|P41118|RS3_ACHSP 30S RIBOSOMAL PROTEIN S3 >gi|2148027|pir||I39515 ribosomal protein
S3 - Acholeplasma sp >gi|456688|gb|AAB88907.1| (L22467)
ribosomal protein S3 [Acholeplasma palmae]
Length = 248
Score = 71.4 bits (172), Expect = 8e-12
Identities = 59/197 (29%), Positives = 97/197 (48%), Gaps = 22/197 (11%)
Query: 17 IDEFLEKELRRAGYGGLDIK----KTPLGTKVIIFAANPGYVIGRGG----RRIRELTRI 68
I ++L K ++AG ++I+ K KV ++ A PG VIGR G + + EL +
Sbjct: 39 IRKYLNKVYKKAGVSQIEIERLKGKAKDRIKVTLYTAKPGIVIGRDGETRNKAVSELEYL 98
Query: 69 LERQFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGV 128
+++ +V E+K P A++ A +A+ LE FRR A++ + +GA+GV
Sbjct: 99 TKKEI-----VFNVVEVKRPEKVAELVAQNMAEQLENRASFRRVQKIAIQRALKSGAKGV 153
Query: 129 EIRISGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMP 184
+ +SG+L G E A+S + +G + P TL V A+A GV+G+KV +
Sbjct: 154 KTLVSGRLGGAEMARSEGYSEGRV-----PLHTLRADVDYATAEAHTTYGVLGIKVWVFH 208
Query: 185 PDARLPDEIEIIEKPVE 201
+ I KP E
Sbjct: 209 GEVLPGQTILDTRKPFE 225
>gi|11466365 ribosomal protein S3 [Mesostigma viride]
>gi|7259508|gb|AAF43809.1|AF166114_21 (AF166114)
ribosomal protein S3 [Mesostigma viride]
Length = 213
Score = 71.4 bits (172), Expect = 8e-12
Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 10/171 (5%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLE 76
I ++L +L AG +DI++ ++ I+ A PG V+GR G+ I L R L+ + +
Sbjct: 39 IRKYLNAKLANAGVARIDIQRKADQVEIEIYTARPGLVVGRTGKGIENLIRDLQDKLRNK 98
Query: 77 NP-QIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGK 135
+I + ++ P L + + IAQ L+ FRRA A++ G +G++I+++G+
Sbjct: 99 RKFRITITYLQEPDLESTLIGEFIAQRLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGR 158
Query: 136 LTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAI 182
L G E A+S +G + P +TL + + QA G+IG+KV I
Sbjct: 159 LNGAEIARSEWVREGRV-----PLQTLRADIDYSHCQAKTIYGIIGIKVWI 204
>gi|11465774 30S ribosomal protein S3 [Porphyra purpurea]
>gi|1710704|sp|P51308|RR3_PORPU CHLOROPLAST 30S
RIBOSOMAL PROTEIN S3 >gi|2147034|pir||S73229 ribosomal
protein S3, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276774|gb|AAC08194.1| (U38804) 30S
ribosomal protein S3 [Porphyra purpurea]
Length = 230
Score = 70.6 bits (170), Expect = 1e-11
Identities = 59/197 (29%), Positives = 99/197 (49%), Gaps = 17/197 (8%)
Query: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIREL----TRILERQ 72
I F+ +L A ++I + +V+I A PG V+G+ G I L T IL+
Sbjct: 39 IRSFIHGKLSNASIAKIEINRKADQVEVLIATARPGIVLGKSGAGIESLRNSLTLILDPN 98
Query: 73 FGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRI 132
+ +++V EI +P A + A I Q LE+ + FRRA A++ +GV+I++
Sbjct: 99 ---KQIRVNVVEISDPDSEATLVAEFITQQLEKRVAFRRAVRQAVQRAQRANTQGVKIQV 155
Query: 133 SGKLTG-ERAKSVRFYQGYLAKVGNPAETL---VSKGYAQALLKLGVIGVKVAIMPPDAR 188
SG+L G E A+S +G + P +TL + + QA GV+GVKV + +
Sbjct: 156 SGRLNGAEIARSEWVREGRV-----PLQTLRADIDYCHRQAHTTYGVLGVKVWLFKGEL- 209
Query: 189 LPDEIEIIEKPVEEEVS 205
LPD + P +++++
Sbjct: 210 LPDSKVVELAPSQDQIN 226
>sp|Q9XD30|RS3_LEPIN 30S RIBOSOMAL PROTEIN S3 >gi|5163210|gb|AAD40589.1|AF115283_8
(AF115283) ribosomal protein S3 [Leptospira interrogans]
Length = 225
Score = 70.2 bits (169), Expect = 2e-11
Identities = 53/173 (30%), Positives = 87/173 (49%), Gaps = 12/173 (6%)
Query: 13 KEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQ 72
+++ I +F++ AG + I++ P V + A PG VIG+ G I + +IL+
Sbjct: 34 EDIKIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTM 93
Query: 73 FGLENP-QIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIR 131
+ P +++ E+K P A+ A IA +E+ FRR +R M G G++I
Sbjct: 94 --TDKPVNLNIIEVKKPETVAQCIAESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKIL 151
Query: 132 ISGKLTG-ERAKSVRFYQGYLAKVGNPAETLVSK---GYAQALLKLGVIGVKV 180
ISG+L G + A+ + +G + P TL +K G+ +A G IGVKV
Sbjct: 152 ISGRLNGADMARRENYKEGRI-----PLHTLRAKIDLGFKEAKTTFGQIGVKV 199
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72320853
Number of Sequences: 2977
Number of extensions: 2806545
Number of successful extensions: 7263
Number of sequences better than 1.0e-10: 81
Number of HSP's better than 0.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 7147
Number of HSP's gapped (non-prelim): 83
length of query: 210
length of database: 189,106,746
effective HSP length: 57
effective length of query: 153
effective length of database: 154,992,987
effective search space: 23713927011
effective search space used: 23713927011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)