BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2126 (PAB2126) DE:Hypothetical protein
(127 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75146 hypothetical protein PAB2126 - Pyrococcus abyssi (st... 271 3e-72
sp|O59425|YH71_PYRHO HYPOTHETICAL PROTEIN PH1771 >gi|7450639|pir... 231 3e-60
sp|O26119|Y011_METTH HYPOTHETICAL PROTEIN MTH11 >gi|7450638|pir|... 87 9e-17
sp|Q57903|Y464_METJA HYPOTHETICAL PROTEIN MJ0464 >gi|2128011|pir... 85 3e-16
sp|P14022|YRP2_METVA HYPOTHETICAL 11.6 KDA PROTEIN IN RS17 5'REG... 73 1e-12
>pir||H75146 hypothetical protein PAB2126 - Pyrococcus abyssi (strain Orsay)
>gi|5457765|emb|CAB49255.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 127
Score = 271 bits (685), Expect = 3e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MRRNGKERKDRTSGGSQRPYQEIVGRTWIFRGSHRGRVTKRNIIWHELIGLKVRVVNSMH 60
MRRNGKERKDRTSGGSQRPYQEIVGRTWIFRGSHRGRVTKRNIIWHELIGLKVRVVNSMH
Sbjct: 1 MRRNGKERKDRTSGGSQRPYQEIVGRTWIFRGSHRGRVTKRNIIWHELIGLKVRVVNSMH 60
Query: 61 PGFVGIEGYVVDETRNMLVIVGDKVWKVPKDVCIFEFETEDGAKIKIPGERLVGRPEMRL 120
PGFVGIEGYVVDETRNMLVIVGDKVWKVPKDVCIFEFETEDGAKIKIPGERLVGRPEMRL
Sbjct: 61 PGFVGIEGYVVDETRNMLVIVGDKVWKVPKDVCIFEFETEDGAKIKIPGERLVGRPEMRL 120
Query: 121 KKRWRKW 127
KKRWRKW
Sbjct: 121 KKRWRKW 127
>sp|O59425|YH71_PYRHO HYPOTHETICAL PROTEIN PH1771 >gi|7450639|pir||G71186 hypothetical
protein PH1771 - Pyrococcus horikoshii
>gi|3258203|dbj|BAA30886.1| (AP000007) 127aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 127
Score = 231 bits (582), Expect = 3e-60
Identities = 103/127 (81%), Positives = 115/127 (90%)
Query: 1 MRRNGKERKDRTSGGSQRPYQEIVGRTWIFRGSHRGRVTKRNIIWHELIGLKVRVVNSMH 60
MRRN KERK+R + SQ YQEI+GRTWIFRG+HRGRVT+RNIIWHELIGL+VR+V S H
Sbjct: 1 MRRNSKERKNRATRRSQGSYQEIIGRTWIFRGAHRGRVTRRNIIWHELIGLRVRIVGSTH 60
Query: 61 PGFVGIEGYVVDETRNMLVIVGDKVWKVPKDVCIFEFETEDGAKIKIPGERLVGRPEMRL 120
P FVGIEGYV+DETRNMLVI GD++WKVPKDVCIFEFE +DG KIKIPGERLVGRPEMRL
Sbjct: 61 PAFVGIEGYVIDETRNMLVIAGDRIWKVPKDVCIFEFEADDGTKIKIPGERLVGRPEMRL 120
Query: 121 KKRWRKW 127
KKRW+KW
Sbjct: 121 KKRWKKW 127
>sp|O26119|Y011_METTH HYPOTHETICAL PROTEIN MTH11 >gi|7450638|pir||B69013 conserved
hypothetical protein MTH11 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621039|gb|AAB84512.1| (AE000795) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 93
Score = 87.0 bits (212), Expect = 9e-17
Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 38 VTKRNIIWHELIGLKVRVVNSMHPGFVGIEGYVVDETRNMLVIVGD--KVWKVPKDVCIF 95
+T RNI HELIGL VR+ S+H GI G VVDETRN L I D + VPK + +F
Sbjct: 2 ITPRNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVF 61
Query: 96 EFETEDGAKIKIPGERLVGRPEMRLKKRWRK 126
F T G ++I G LV RPE R+KK++RK
Sbjct: 62 HFRTPQGELVEIDGRALVARPEERIKKKFRK 92
>sp|Q57903|Y464_METJA HYPOTHETICAL PROTEIN MJ0464 >gi|2128011|pir||H64357 conserved
hypothetical protein MJ0464 - Methanococcus jannaschii
>gi|1591166|gb|AAB98453.1| (U67497) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 95
Score = 85.0 bits (207), Expect = 3e-16
Identities = 43/88 (48%), Positives = 61/88 (68%), Gaps = 3/88 (3%)
Query: 38 VTKRNIIWHELIGLKVRVVNSMHPGFVGIEGYVVDETRNMLVIVGD--KVWKVPKDVCIF 95
+T NI+ HELIGLKV +V + + +GI+G VVDETRN LVI + + +PKD+ +F
Sbjct: 2 ITPHNILRHELIGLKVEIVEAKNKAMIGIKGKVVDETRNTLVIEKEDGREVVIPKDIAVF 61
Query: 96 EFETEDGAKIKIPGERLVGRPEMRLKKR 123
F+ + G K+K+ G L+GRPE RLKK+
Sbjct: 62 LFQLK-GCKVKVDGRLLIGRPEERLKKK 88
>sp|P14022|YRP2_METVA HYPOTHETICAL 11.6 KDA PROTEIN IN RS17 5'REGION (ORF B)
>gi|80970|pir||S05612 hypothetical protein B -
Methanococcus vannielii >gi|44756|emb|CAA34688.1|
(X16720) ORF b [Methanococcus vannielii]
Length = 99
Score = 73.0 bits (176), Expect = 1e-12
Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 41 RNIIWHELIGLKVRVVNSMHPGFVGIEGYVVDETRNMLVIV--GDKVWKVPKDVCIFEFE 98
+NI+ HEL+GL + +VNS + +G V++ETRNMLVI K VPK++ IF FE
Sbjct: 5 QNILRHELVGLNLEIVNSTDKRLISTKGRVINETRNMLVIEKNNGKEITVPKEISIFRFE 64
Query: 99 TED---GAKIKIPGERLVGRPEMRLKKR 123
D K+ I G L+GRPE RLK++
Sbjct: 65 FSDLDTPKKVDIDGRLLIGRPEDRLKRK 92
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.455
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53484512
Number of Sequences: 2977
Number of extensions: 2141566
Number of successful extensions: 3273
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3267
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 189,106,746
effective HSP length: 46
effective length of query: 81
effective length of database: 161,576,344
effective search space: 13087683864
effective search space used: 13087683864
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)