BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2127 (rps17P) DE:SSU ribosomal protein S17P (rps17P)
(116 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75146 ssu ribosomal protein s17p (rps17p) PAB2127 - Pyroco... 247 3e-65
sp|O59426|RS17_PYRHO 30S RIBOSOMAL PROTEIN S17P >gi|7440461|pir|... 247 5e-65
sp|P54036|RS17_METJA 30S RIBOSOMAL PROTEIN S17P >gi|2144766|pir|... 136 9e-32
sp|O26120|RS17_METTH 30S RIBOSOMAL PROTEIN S17P >gi|7440463|pir|... 134 4e-31
sp|P14042|RS17_METVA 30S RIBOSOMAL PROTEIN S17P >gi|71006|pir||R... 120 6e-27
gb|AAK41010.1| SSU ribosomal protein S17AB (rps17AB) [Sulfolobus... 116 7e-26
sp|Q9UX98|RS17_SULSO 30S RIBOSOMAL PROTEIN S17P >gi|6015767|emb|... 116 7e-26
sp|Q9YF81|RS17_AERPE 30S RIBOSOMAL PROTEIN S17P >gi|7440472|pir|... 113 8e-25
sp|O24786|RS17_HALHA 30S RIBOSOMAL PROTEIN S17 (HHAS17) >gi|1138... 112 2e-24
gi|11499500 SSU ribosomal protein S17P (rps17P) [Archaeoglobus f... 111 2e-24
sp|P12741|RS17_HALMA 30S RIBOSOMAL PROTEIN S17 (HMAS17) (HS14) >... 108 3e-23
sp|P42756|RS11_DUNTE 40S RIBOSOMAL PROTEIN S11 >gi|7440474|pir||... 99 2e-20
dbj|BAB10047.1| (AB005244) 40S ribosomal protein S11 [Arabidopsi... 98 3e-20
emb|CAC12386.1| (AL445067) probable ribosomal protein S17 [Therm... 98 3e-20
gb|AAF34771.1|AF227626_1 (AF227626) 40S ribosomal protein S11 [E... 98 4e-20
sp|P16181|R11A_ARATH 40S RIBOSOMAL PROTEIN S11-ALPHA >gi|81659|p... 98 4e-20
gb|AAA32866.1| (J05216) ribosomal protein S11 (probable start co... 98 4e-20
sp|P25460|RS11_MAIZE 40S RIBOSOMAL PROTEIN S11 >gi|82722|pir||S1... 97 6e-20
sp|P42733|R11B_ARATH 40S RIBOSOMAL PROTEIN S11-BETA >gi|166869|g... 97 6e-20
sp|O65569|R11G_ARATH 40S RIBOSOMAL PROTEIN S11-LIKE >gi|5708091|... 97 6e-20
pir||T18498 hypothetical protein C0775w - malaria parasite (Plas... 95 3e-19
emb|CAB11137.2| (Z98551) 40S Ribosomal protein S11 [Plasmodium f... 95 3e-19
sp|P41115|RS11_XENLA 40S RIBOSOMAL PROTEIN S11 >gi|1079315|pir||... 94 4e-19
pir||D35542 ribosomal protein S11 - soybean (fragment) >gi|17005... 94 5e-19
sp|P17093|RS11_SOYBN 40S RIBOSOMAL PROTEIN S11 >gi|454848|gb|AAC... 94 5e-19
pir||T07165 ribosomal protein S11 - Cyanophora paradoxa (fragmen... 93 9e-19
gb|AAD51368.1|AF177283_1 (AF177283) putative ribosomal protein S... 93 9e-19
dbj|BAA19165.1| (AB000704) ribosomal protein S11 homolog [Schizo... 92 2e-18
sp|P79013|RS11_SCHPO 40S RIBOSOMAL PROTEIN S11 >gi|7489965|pir||... 92 2e-18
gb|AAG22825.1|AF304162_1 (AF304162) 40S ribosomal protein S11 [S... 92 2e-18
pir||T22027 hypothetical protein F40F11.1 - Caenorhabditis elega... 92 2e-18
gi|4506681 ribosomal protein S11 [Homo sapiens] >gi|11424110|ref... 91 4e-18
dbj|BAA25142.1| (AB012087) 40S ribosomal protein S11 [Cyprinus c... 90 1e-17
emb|CAB95532.1| (AL359782) probable ribosomal protein s11 homolo... 89 2e-17
gb|AAF58552.1| (AE003823) CG8857 gene product [Drosophila melano... 88 3e-17
gb|AAG22824.1|AF304161_1 (AF304161) 40S ribosomal protein S11 [S... 88 3e-17
pir||A48583 ribosomal protein S11 homolog - Leishmania donovani 88 4e-17
gb|AAG33862.1|AF315552_1 (AF315552) ribosomal protein S11 [Aedes... 87 7e-17
emb|CAB46822.1| (AJ388520) Ribosomal protein [Canis familiaris] 86 2e-16
gb|AAC35458.1| (AF026127) RPYS18 [Rhizopus arrhizus] 85 2e-16
gi|6319522 Ribosomal protein S11B (S18B) (rp41B) (YS12); Rps11bp... 85 3e-16
emb|CAA86390.1| (Z46260) ribosomal protein S18 [Saccharomyces ce... 85 3e-16
emb|CAA84991.1| (Z35918) ORF YBR048w [Saccharomyces cerevisiae] 85 3e-16
gb|AAB63874.1| (U97382) 40S ribosomal protein S11 homolog [Schiz... 74 7e-13
sp|P52812|RS11_ANOGA 40S RIBOSOMAL PROTEIN S11 >gi|1220139|emb|C... 71 5e-12
>pir||G75146 ssu ribosomal protein s17p (rps17p) PAB2127 - Pyrococcus abyssi
(strain Orsay) >gi|5457764|emb|CAB49254.1| (AJ248284)
SSU ribosomal protein S17P (rps17P) [Pyrococcus abyssi]
Length = 116
Score = 247 bits (624), Expect = 3e-65
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MEKMVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYL 60
MEKMVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYL
Sbjct: 1 MEKMVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYL 60
Query: 61 KKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
KKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR
Sbjct: 61 KKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
>sp|O59426|RS17_PYRHO 30S RIBOSOMAL PROTEIN S17P >gi|7440461|pir||F71186 probable
ribosomal protein S17 - Pyrococcus horikoshii
>gi|3258202|dbj|BAA30885.1| (AP000007) 116aa long
hypothetical 30S ribosomal protein S17 [Pyrococcus
horikoshii]
Length = 116
Score = 247 bits (623), Expect = 5e-65
Identities = 115/116 (99%), Positives = 116/116 (99%)
Query: 1 MEKMVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYL 60
MEKMVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIV+SDKPRKTVTVERQYYHYL
Sbjct: 1 MEKMVRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYL 60
Query: 61 KKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
KKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR
Sbjct: 61 KKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
>sp|P54036|RS17_METJA 30S RIBOSOMAL PROTEIN S17P >gi|2144766|pir||A64358 ribosomal
protein S17 - Methanococcus jannaschii
>gi|1591167|gb|AAB98454.1| (U67497) SSU ribosomal
protein S17P (rpsQ) [Methanococcus jannaschii]
Length = 117
Score = 136 bits (339), Expect = 9e-32
Identities = 60/109 (55%), Positives = 83/109 (76%)
Query: 6 RDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYER 65
R+IG++++ P +CDD CP+HG+L + G+ F G+VVSDKP KTV ++R+ Y+KKYER
Sbjct: 4 RNIGIQVKAPEVECDDKNCPFHGNLPVRGQSFVGVVVSDKPHKTVIIKREVVKYIKKYER 63
Query: 66 YELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAEE 114
YE R +++ AHNPPCI+A+VGD V + E RP+SKTK FVVV L R +E
Sbjct: 64 YERRTTKLAAHNPPCIHARVGDIVRVMECRPISKTKAFVVVEKLGRIDE 112
>sp|O26120|RS17_METTH 30S RIBOSOMAL PROTEIN S17P >gi|7440463|pir||A69027 ribosomal
protein S17 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621040|gb|AAB84513.1| (AE000795)
ribosomal protein S11 (E.coli S17) [Methanobacterium
thermoautotrophicum]
Length = 106
Score = 134 bits (334), Expect = 4e-31
Identities = 59/101 (58%), Positives = 76/101 (74%)
Query: 8 IGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYE 67
+G+ + P KC DP CP+HG L + G++ EG VVSDK +TVTVER +Y +++KYERYE
Sbjct: 2 VGIDVPEPKSKCSDPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYE 61
Query: 68 LRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
R+S+I AH P CI+ +VGD V IAE RPLSKTK+FVVV V
Sbjct: 62 KRKSKIKAHKPDCIDVRVGDTVKIAECRPLSKTKNFVVVEV 102
>sp|P14042|RS17_METVA 30S RIBOSOMAL PROTEIN S17P >gi|71006|pir||R3MX17 ribosomal protein
S17 - Methanococcus vannielii >gi|44757|emb|CAA34689.1|
(X16720) rpS17 (AA 1-109) [Methanococcus vannielii]
Length = 109
Score = 120 bits (298), Expect = 6e-27
Identities = 52/107 (48%), Positives = 72/107 (66%)
Query: 7 DIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERY 66
+IG+ ++ P C+D CP+HG L + G++FEG+V DK T+ ++R+ Y+ KYERY
Sbjct: 3 NIGIDVKAPENVCEDVNCPFHGTLSVRGQIFEGVVSGDKGHNTIVIKREVTGYISKYERY 62
Query: 67 ELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAE 113
E R + + AHNPPCINAK GD V + E RP+SKTK FVV+ E E
Sbjct: 63 EKRTTSLVAHNPPCINAKTGDVVKVMECRPVSKTKSFVVIEKTENLE 109
>gb|AAK41010.1| SSU ribosomal protein S17AB (rps17AB) [Sulfolobus solfataricus]
Length = 114
Score = 116 bits (289), Expect = 7e-26
Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 3 KMVRDIGL-RIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
K V+D G+ I P + C+D CP+HG L++ G EG++V + K +ERQY +Y
Sbjct: 6 KTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDS 65
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVV 106
KY+RYE RRSRIHAH PPCIN + GD+V+I E RPLSK+ FVV+
Sbjct: 66 KYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVL 110
>sp|Q9UX98|RS17_SULSO 30S RIBOSOMAL PROTEIN S17P >gi|6015767|emb|CAB57594.1| (Y18930)
ribosomal protein S17 (HMAS17) [Sulfolobus solfataricus]
Length = 114
Score = 116 bits (289), Expect = 7e-26
Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 3 KMVRDIGL-RIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
K V+D G+ I P + C+D CP+HG L++ G EG++V + K +ERQY +Y
Sbjct: 6 KTVKDPGIPNITIPEKVCEDEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDS 65
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVV 106
KY+RYE RRSRIHAH PPCIN + GD+V+I E RPLSK+ FVV+
Sbjct: 66 KYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVL 110
>sp|Q9YF81|RS17_AERPE 30S RIBOSOMAL PROTEIN S17P >gi|7440472|pir||G72727 probable
ribosomal protein S17 APE0360 - Aeropyrum pernix
(strain K1) >gi|5103999|dbj|BAA79315.1| (AP000059) 120aa
long hypothetical 30S ribosomal protein S17 [Aeropyrum
pernix]
Length = 120
Score = 113 bits (280), Expect = 8e-25
Identities = 49/100 (49%), Positives = 65/100 (65%)
Query: 12 IQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRS 71
++PP + C DP CPWHG L++ G + EG+V + R+ V V+ Y +Y KKY RYE R
Sbjct: 21 VEPPEKVCSDPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSK 80
Query: 72 RIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLER 111
+IHAH P CI+ K GD V+I ET P+SKT F V+ V R
Sbjct: 81 KIHAHLPDCISVKEGDVVVIGETMPISKTVKFTVLGVKRR 120
>sp|O24786|RS17_HALHA 30S RIBOSOMAL PROTEIN S17 (HHAS17) >gi|11383600|pir||T43825
ribosomal protein S17 [validated] - Halobacterium
salinarum >gi|2425185|dbj|BAA22279.1| (AB006961)
ribosomal protein S17 [Halobacterium halobium]
>gi|10581168|gb|AAG19945.1| (AE005077) 30S ribosomal
protein S17P; Rps17p [Halobacterium sp. NRC-1]
Length = 109
Score = 112 bits (277), Expect = 2e-24
Identities = 54/103 (52%), Positives = 67/103 (64%)
Query: 8 IGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYE 67
IGL + P C D CP+HG+L + G+V EG V S KTV VER+Y ++ KY+RY
Sbjct: 3 IGLNVTEPEGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYM 62
Query: 68 LRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLE 110
RRSR+ AH P C + VGD V IAETRPLSKTK VVV + +
Sbjct: 63 KRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITD 105
>gi|11499500 SSU ribosomal protein S17P (rps17P) [Archaeoglobus fulgidus]
>gi|6226078|sp|O28363|RS17_ARCFU 30S RIBOSOMAL PROTEIN
S17P >gi|7440462|pir||C69489 SSU ribosomal protein S17P
(rps17P) homolog - Archaeoglobus fulgidus
>gi|2648627|gb|AAB89337.1| (AE000971) SSU ribosomal
protein S17P (rps17P) [Archaeoglobus fulgidus]
Length = 111
Score = 111 bits (276), Expect = 2e-24
Identities = 50/105 (47%), Positives = 72/105 (67%), Gaps = 1/105 (0%)
Query: 5 VRDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYE 64
+RDIG+ ++PP +C+D CP+HG L + G++ G VV KT +ER+ Y+ K+E
Sbjct: 1 MRDIGIDVKPPERECEDENCPFHGTLSVRGQLLRGKVVKVYG-KTAVIERELIRYVPKFE 59
Query: 65 RYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
RY +RS++HAHNP CI A+ GD V I E RP+SKTK FV++ V+
Sbjct: 60 RYMKKRSKLHAHNPRCIRARPGDIVTIGECRPISKTKSFVILEVV 104
>sp|P12741|RS17_HALMA 30S RIBOSOMAL PROTEIN S17 (HMAS17) (HS14) >gi|279643|pir||R3HS17
ribosomal protein S17 [validated] - Haloarcula
marismortui >gi|43613|emb|CAA39017.1| (X55311) ribosomal
protein HmaS17 [Haloarcula marismortui]
Length = 112
Score = 108 bits (266), Expect = 3e-23
Identities = 52/102 (50%), Positives = 65/102 (62%)
Query: 8 IGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYE 67
+GL +Q P E C D CP+HG L + G+ G V S KTV VER+Y + KY+R+
Sbjct: 3 LGLNVQEPEETCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKYDRFM 62
Query: 68 LRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
RRSR+ AH P C++ VGD V IAE RPLSKTK VVV V+
Sbjct: 63 KRRSRVPAHAPDCLDLAVGDTVTIAECRPLSKTKSHVVVGVV 104
>sp|P42756|RS11_DUNTE 40S RIBOSOMAL PROTEIN S11 >gi|7440474|pir||T10730 ribosomal protein
S11 - green alga (Dunaliella tertiolecta)
>gi|534959|emb|CAA46835.1| (X66036) ribosomal protein
S11 [Dunaliella tertiolecta]
Length = 157
Score = 99.1 bits (243), Expect = 2e-20
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 3 KMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYH 58
+ +++GL + P E D D KCP+ G++ I GR+ G+V S K +T+ V R Y H
Sbjct: 33 RFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLH 92
Query: 59 YLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERA 112
++ KY RYE R + I AH PC + GD V+I + RPLSKT F V+ V+ +A
Sbjct: 93 FIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQA 146
>dbj|BAB10047.1| (AB005244) 40S ribosomal protein S11 [Arabidopsis thaliana]
Length = 159
Score = 98.3 bits (241), Expect = 3e-20
Identities = 49/108 (45%), Positives = 65/108 (59%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
++IGL + P E D D KCP+ G + I GR+ G S K ++T+ V R Y H++K
Sbjct: 37 KNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH PC K GD V+I + RPLSKT F V+ V+
Sbjct: 97 KYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
>emb|CAC12386.1| (AL445067) probable ribosomal protein S17 [Thermoplasma
acidophilum]
Length = 109
Score = 98.3 bits (241), Expect = 3e-20
Identities = 46/101 (45%), Positives = 61/101 (59%)
Query: 6 RDIGLRIQPPAEKCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYER 65
R+IGL ++ P +C+DP CP+HG L + G+V G VVS K+ V R+Y Y+ KYER
Sbjct: 4 RNIGLDVKLPESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIPKYER 63
Query: 66 YELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVV 106
+ + H H P CI K GD V AE R L+KT FV+V
Sbjct: 64 KATKIKKYHVHVPDCIKIKPGDTVRFAECRKLAKTISFVIV 104
>gb|AAF34771.1|AF227626_1 (AF227626) 40S ribosomal protein S11 [Euphorbia esula]
Length = 159
Score = 97.9 bits (240), Expect = 4e-20
Identities = 49/108 (45%), Positives = 63/108 (57%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ IGL + P E D D KCP+ G + I GR+ G S K +T+ V R Y H++K
Sbjct: 37 KSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH PC K GD V+I + RPLSKT F V+ V+
Sbjct: 97 KYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
>sp|P16181|R11A_ARATH 40S RIBOSOMAL PROTEIN S11-ALPHA >gi|81659|pir||C35542 ribosomal
protein S11 - Arabidopsis thaliana
>gi|454808|gb|AAC14454.1| (L28828) ribosomal protein S11
[Arabidopsis thaliana] >gi|6522573|emb|CAB62017.1|
(AL132967) cytosolic ribosomal protein S11 [Arabidopsis
thaliana]
Length = 160
Score = 97.9 bits (240), Expect = 4e-20
Identities = 48/108 (44%), Positives = 65/108 (59%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
++IGL + P E D D KCP+ G + I GR+ G S K ++T+ V R Y H++K
Sbjct: 37 KNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH PC K GD ++I + RPLSKT F V+ V+
Sbjct: 97 KYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVI 144
>gb|AAA32866.1| (J05216) ribosomal protein S11 (probable start codon at bp 67)
[Arabidopsis thaliana]
Length = 182
Score = 97.9 bits (240), Expect = 4e-20
Identities = 48/108 (44%), Positives = 65/108 (59%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
++IGL + P E D D KCP+ G + I GR+ G S K ++T+ V R Y H++K
Sbjct: 59 KNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVK 118
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH PC K GD ++I + RPLSKT F V+ V+
Sbjct: 119 KYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVI 166
>sp|P25460|RS11_MAIZE 40S RIBOSOMAL PROTEIN S11 >gi|82722|pir||S16577 ribosomal protein
S11 - maize >gi|22470|emb|CAA39438.1| (X55967) ribosomal
protein S11 [Zea mays]
Length = 159
Score = 97.1 bits (238), Expect = 6e-20
Identities = 49/108 (45%), Positives = 63/108 (57%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++K
Sbjct: 37 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH PC K GD V+I + RPLSKT F VV V+
Sbjct: 97 KYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVI 144
>sp|P42733|R11B_ARATH 40S RIBOSOMAL PROTEIN S11-BETA >gi|166869|gb|AAA32867.1| (L07877)
ribosomal protein S11 [Arabidopsis thaliana]
Length = 159
Score = 97.1 bits (238), Expect = 6e-20
Identities = 49/108 (45%), Positives = 64/108 (58%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
++IGL + P E D D KCP+ G + I GR+ G S K ++T+ V R Y H++K
Sbjct: 37 KNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY RYE R S I AH PC K GD V+I + RPLSKT F V+ V+
Sbjct: 97 KYPRYEKRHSHIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
>sp|O65569|R11G_ARATH 40S RIBOSOMAL PROTEIN S11-LIKE >gi|5708091|emb|CAA18213.2|
(AL022198) ribosomal protein S11-like [Arabidopsis
thaliana] >gi|7269981|emb|CAB79798.1| (AL161577)
ribosomal protein S11-like [Arabidopsis thaliana]
Length = 159
Score = 97.1 bits (238), Expect = 6e-20
Identities = 49/108 (45%), Positives = 64/108 (58%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
++IGL + P E + D KCP+ G + I GR+ G S K ++T+ V R Y H++K
Sbjct: 37 KNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY RYE R S I AH PC K GDRV I + RPLSKT F V+ V+
Sbjct: 97 KYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVI 144
>pir||T18498 hypothetical protein C0775w - malaria parasite (Plasmodium
falciparum)
Length = 161
Score = 94.8 bits (232), Expect = 3e-19
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ +GL P E + D KCP+ G++ I GR+ +G+V+S+K ++T+ + R Y HY+K
Sbjct: 39 KKVGLGFATPKEAKEGVYVDKKCPFTGNVSIRGRILKGMVISNKMKRTIIIRRNYLHYVK 98
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
KY R+E R I H PC + K GD V + + RPLSKT F V+ V
Sbjct: 99 KYNRFEKRHKNIPCHCSPCFDVKEGDIVTVGQCRPLSKTVRFNVLHV 145
>emb|CAB11137.2| (Z98551) 40S Ribosomal protein S11 [Plasmodium falciparum]
Length = 161
Score = 94.8 bits (232), Expect = 3e-19
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ +GL P E + D KCP+ G++ I GR+ +G+V+S+K ++T+ + R Y HY+K
Sbjct: 39 KKVGLGFATPKEAKEGVYVDKKCPFTGNVSIRGRILKGMVISNKMKRTIIIRRNYLHYVK 98
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
KY R+E R I H PC + K GD V + + RPLSKT F V+ V
Sbjct: 99 KYNRFEKRHKNIPCHCSPCFDVKEGDIVTVGQCRPLSKTVRFNVLHV 145
>sp|P41115|RS11_XENLA 40S RIBOSOMAL PROTEIN S11 >gi|1079315|pir||JC2499 ribosomal protein
S11 - African clawed frog >gi|551286|emb|CAA55387.1|
(X78805) ribosomal protein S11 [Xenopus laevis]
Length = 158
Score = 94.4 bits (231), Expect = 4e-19
Identities = 45/121 (37%), Positives = 69/121 (56%), Gaps = 5/121 (4%)
Query: 1 MEKMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQY 56
+ + R +GL + P E D D KCP+ G++ I GR+ G+V K ++T+ + R Y
Sbjct: 33 LPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDY 92
Query: 57 YHYLKKYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEER 115
HY++KY R+E R + H PC + +VGD V + E RPLSKT F V+ V + A +
Sbjct: 93 LHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKAAGTK 152
Query: 116 R 116
+
Sbjct: 153 K 153
>pir||D35542 ribosomal protein S11 - soybean (fragment)
>gi|170054|gb|AAA34006.1| (M31024) ribosomal protein S11
[Glycine max]
Length = 141
Score = 94.0 bits (230), Expect = 5e-19
Identities = 47/108 (43%), Positives = 63/108 (57%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ IGL + P E + D KCP+ G++ I GR+ G S K +T+ V R Y H++K
Sbjct: 19 KSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIK 78
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH P K GD V+I + RPLSKT F V+ V+
Sbjct: 79 KYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 126
>sp|P17093|RS11_SOYBN 40S RIBOSOMAL PROTEIN S11 >gi|454848|gb|AAC14469.1| (L28831)
ribosomal protein S11 [Glycine max]
Length = 159
Score = 94.0 bits (230), Expect = 5e-19
Identities = 47/108 (43%), Positives = 63/108 (57%), Gaps = 4/108 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ IGL + P E + D KCP+ G++ I GR+ G S K +T+ V R Y H++K
Sbjct: 37 KSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIK 96
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
KY+RYE R S I AH P K GD V+I + RPLSKT F V+ V+
Sbjct: 97 KYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 144
>pir||T07165 ribosomal protein S11 - Cyanophora paradoxa (fragment)
>gi|3402191|emb|CAA06411.1| (AJ005170) 40S ribosomal
protein S11 [Cyanophora paradoxa]
Length = 164
Score = 93.2 bits (228), Expect = 9e-19
Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
R+IGL + P E + D KCP+ G++ I GR+ +G+V S K ++T+ V R Y H++
Sbjct: 40 RNIGLGFKTPREAIEGSYIDKKCPFTGNVSIRGRILQGVVQSTKMKRTLVVRRDYMHFIP 99
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERA 112
KY RYE R AH P GD V++ + RPLSKT F V+ V+ +A
Sbjct: 100 KYNRYEKRHKNFPAHCSPAFIVNPGDTVIVGQCRPLSKTVRFNVLKVIPKA 150
>gb|AAD51368.1|AF177283_1 (AF177283) putative ribosomal protein S11 [Physarum polycephalum]
Length = 158
Score = 93.2 bits (228), Expect = 9e-19
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 3 KMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVS-DKPRKTVTVERQYY 57
+ VR +GL + P + D KCP+ G++ I GR+ G+VVS K ++TV V R Y
Sbjct: 35 RYVRQVGLGYKTPKAALEGTFVDDKCPFTGNVSIRGRILRGVVVSAGKMKRTVVVRRNYL 94
Query: 58 HYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
HY++KY+RYE R + H P ++ K GD V + E RPLSKT F V+ V
Sbjct: 95 HYIQKYKRYEKRHTNFSVHCSPALDVKEGDTVTVGECRPLSKTVRFNVLKV 145
>dbj|BAA19165.1| (AB000704) ribosomal protein S11 homolog [Schizosaccharomyces
pombe]
Length = 139
Score = 92.4 bits (226), Expect = 2e-18
Identities = 45/112 (40%), Positives = 64/112 (56%), Gaps = 4/112 (3%)
Query: 6 RDIGLRIQPPAE----KCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+D+GL + PAE + D KCP+ G + I GR+ G VVS K +T+ + R+Y H++
Sbjct: 20 KDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIP 79
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAE 113
KY RYE R + AH P GD V + + RPLSKT F V+ V++ E
Sbjct: 80 KYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVVKHTE 131
>sp|P79013|RS11_SCHPO 40S RIBOSOMAL PROTEIN S11 >gi|7489965|pir||T38620 40s ribosomal
protein s11 - fission yeast (Schizosaccharomyces pombe)
>gi|7489966|pir||T37678 40s ribosomal protein s11 -
fission yeast (Schizosaccharomyces pombe)
>gi|2388954|emb|CAB11687.1| (Z98979) 40s ribosomal
protein s11. [Schizosaccharomyces pombe]
>gi|6138902|emb|CAB59691.1| (AL132675) 40s ribosomal
protein s11-2 [Schizosaccharomyces pombe]
Length = 152
Score = 92.4 bits (226), Expect = 2e-18
Identities = 45/112 (40%), Positives = 64/112 (56%), Gaps = 4/112 (3%)
Query: 6 RDIGLRIQPPAE----KCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+D+GL + PAE + D KCP+ G + I GR+ G VVS K +T+ + R+Y H++
Sbjct: 33 KDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIP 92
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERAE 113
KY RYE R + AH P GD V + + RPLSKT F V+ V++ E
Sbjct: 93 KYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRVVKHTE 144
>gb|AAG22825.1|AF304162_1 (AF304162) 40S ribosomal protein S11 [Stizostedion vitreum]
Length = 157
Score = 92.4 bits (226), Expect = 2e-18
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ +GL + P E D D KCP+ G++ I GR+ G+V K ++T+ + R Y HY++
Sbjct: 37 KSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIR 96
Query: 62 KYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
KY R+E R I H PC + VGD V + E RPLSKT F V+ V + A ++
Sbjct: 97 KYNRFEKRHKNISVHLSPCFRDVTVGDIVTVGECRPLSKTVRFNVLKVTKAAGAKK 152
>pir||T22027 hypothetical protein F40F11.1 - Caenorhabditis elegans
>gi|3877016|emb|CAA97792.1| (Z73426) Similarity to Human
40S ribosomal protein S11 (SW:RS11_HUMAN), contains
similarity to Pfam domain: PF00366 (Ribosomal protein
S17), Score=136.2, E-value=9.6e-40, N=1~cDNA EST
yk629c3.3 comes from this gene; cDNA EST yk629c3.5 comes
from this g>
Length = 155
Score = 92.1 bits (225), Expect = 2e-18
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 3 KMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYH 58
+ +R++GL + P + + D KCPW G++ I G + G+V+ +K +T+ V R Y H
Sbjct: 32 RYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRRDYLH 91
Query: 59 YLKKYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAV 108
Y+KKY RYE R + AH P + GD V I E RPLSKT F V+ V
Sbjct: 92 YIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142
>gi|4506681 ribosomal protein S11 [Homo sapiens] >gi|11424110|ref|XP_008923.1|
ribosomal protein S11 [Homo sapiens]
>gi|133723|sp|P04643|RS11_HUMAN 40S RIBOSOMAL PROTEIN
S11 >gi|71004|pir||R3HU11 ribosomal protein S11,
cytosolic - human >gi|71005|pir||R3RT11 ribosomal
protein S11, cytosolic [validated] - rat
>gi|36144|emb|CAA29834.1| (X06617) ribosomal protein S11
(AA 1 - 158) [Homo sapiens] >gi|206739|gb|AAA42076.1|
(K03250) ribosomal protein S11 [Rattus norvegicus]
>gi|1938406|gb|AAB52256.1| (U93864) ribosomal protein
S11 [Mus musculus] >gi|6552366|dbj|BAA88215.1|
(AB028893) ribosomal protein S11 [Homo sapiens]
>gi|6552368|dbj|BAA88216.1| (AB028894) ribosomal protein
S11 [Mus musculus]
Length = 158
Score = 91.3 bits (223), Expect = 4e-18
Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 1 MEKMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQY 56
+ + ++IGL + P E + D KCP+ G++ I GR+ G+V K ++T+ + R Y
Sbjct: 33 LPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDY 92
Query: 57 YHYLKKYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEER 115
HY++KY R+E R + H PC + ++GD V + E RPLSKT F V+ V + A +
Sbjct: 93 LHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK 152
Query: 116 R 116
+
Sbjct: 153 K 153
>dbj|BAA25142.1| (AB012087) 40S ribosomal protein S11 [Cyprinus carpio]
Length = 159
Score = 89.7 bits (219), Expect = 1e-17
Identities = 44/116 (37%), Positives = 66/116 (55%), Gaps = 5/116 (4%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
R++GL + P E D KCP+ G++ I GR+ G+V K ++T+ + R Y HY++
Sbjct: 39 RNVGLGFKTPREAIAGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIR 98
Query: 62 KYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
KY R+E R + H PC + VGD V + E RPLSKT F V+ V + A ++
Sbjct: 99 KYNRFEKRHKNMSVHLSPCFRDVTVGDIVTVGECRPLSKTVRFNVLKVTKAAGAKK 154
>emb|CAB95532.1| (AL359782) probable ribosomal protein s11 homolog. [Trypanosoma
brucei]
Length = 174
Score = 88.5 bits (216), Expect = 2e-17
Identities = 41/111 (36%), Positives = 65/111 (57%), Gaps = 4/111 (3%)
Query: 6 RDIGLRIQPPAE----KCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ IGL P K D KCP+ ++ I GR+ G+V S K R+++ + R Y H+++
Sbjct: 52 KKIGLGFATPKAAINGKYIDRKCPFTSNVSIRGRILRGVVHSTKMRRSIVIRRNYLHFIR 111
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERA 112
KY+RY+ R I H PC + K GD V++ + RPLSKT + V+ V+ ++
Sbjct: 112 KYQRYQKRHRNITVHCSPCFDPKPGDEVVVGQCRPLSKTIRYNVLQVVSKS 162
>gb|AAF58552.1| (AE003823) CG8857 gene product [Drosophila melanogaster]
Length = 155
Score = 88.2 bits (215), Expect = 3e-17
Identities = 44/108 (40%), Positives = 62/108 (56%), Gaps = 5/108 (4%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
RD+GL + P E D D KCPW G ++I GR+ G+V K ++T+ + R Y H+++
Sbjct: 35 RDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVR 94
Query: 62 KYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAV 108
KY R+E R + H P + + GD V I E RPLSKT F V+ V
Sbjct: 95 KYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKV 142
>gb|AAG22824.1|AF304161_1 (AF304161) 40S ribosomal protein S11 [Salmo salar]
Length = 161
Score = 88.2 bits (215), Expect = 3e-17
Identities = 43/116 (37%), Positives = 65/116 (55%), Gaps = 5/116 (4%)
Query: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ +GL + P E D D KCP+ G++ I GR+ G+V K ++T+ + R Y HY++
Sbjct: 41 KSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIR 100
Query: 62 KYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
KY R+E R + H P + VGD V + E RPLSKT F V+ V + A ++
Sbjct: 101 KYNRFEKRHKNMSVHLSPAFRDVSVGDIVTVGECRPLSKTVRFNVLKVTKAAGAKK 156
>pir||A48583 ribosomal protein S11 homolog - Leishmania donovani
Length = 141
Score = 87.8 bits (214), Expect = 4e-17
Identities = 42/111 (37%), Positives = 66/111 (58%), Gaps = 4/111 (3%)
Query: 6 RDIGLRIQPPAE----KCDDPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLK 61
+ IGL + PA+ K D KCP+ ++ I GR+ G+V S K +T+ + R Y H++K
Sbjct: 19 KKIGLGFKTPAKALNGKYIDRKCPFTSNVVIRGRILRGVVHSTKMHRTIIIRRNYLHFIK 78
Query: 62 KYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVLERA 112
KY+RY+ R + H P + K GD V+I + RPLSKT + V+ V+ ++
Sbjct: 79 KYQRYQKRHKSLAVHCSPAFDPKQGDEVVIGQCRPLSKTIRYNVLEVVSKS 129
>gb|AAG33862.1|AF315552_1 (AF315552) ribosomal protein S11 [Aedes aegypti]
Length = 152
Score = 87.0 bits (212), Expect = 7e-17
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 3 KMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYH 58
++ IGL + P E D KCP+ GH+ I GR+ G+V K ++T+ + R Y H
Sbjct: 29 RLHHSIGLGFKTPKEAIAGTYIDKKCPFTGHIAIRGRILTGVVRKMKMQRTIVIRRDYLH 88
Query: 59 YLKKYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
+++KY+R+E R + H PC + + GD V + E RPLSKT F V+ V + A ++
Sbjct: 89 FIRKYDRFEKRHRNLSVHLSPCFRDVEAGDIVTVGECRPLSKTVRFNVLKVSKLAGAKK 147
>emb|CAB46822.1| (AJ388520) Ribosomal protein [Canis familiaris]
Length = 110
Score = 85.8 bits (209), Expect = 2e-16
Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 21 DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPC 80
D KCP+ G++ I GR+ G+V K ++T+ + R Y HY++KY R+E R + H PC
Sbjct: 9 DKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPC 68
Query: 81 I-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEERR 116
+ +GD V + E RPLSKT F V+ V + A ++
Sbjct: 69 FRDVHIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKK 105
>gb|AAC35458.1| (AF026127) RPYS18 [Rhizopus arrhizus]
Length = 103
Score = 85.4 bits (208), Expect = 2e-16
Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 23 KCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCIN 82
KCP+ G + I GR+ G+VVS K ++T+ V R Y HY+ KY RYE R I AH P +
Sbjct: 2 KCPFVGEVNIQGRILTGVVVSTKMKRTLVVRRDYLHYIPKYNRYEKRHKNISAHVSPAFD 61
Query: 83 ---AKVGDRVLIAETRPLSKTKHFVVVAV 108
+VGD V I + RPLSKT F V+ V
Sbjct: 62 NQAIQVGDMVTIGQCRPLSKTVRFNVIKV 90
>gi|6319522 Ribosomal protein S11B (S18B) (rp41B) (YS12); Rps11bp
[Saccharomyces cerevisiae] >gi|6320228|ref|NP_010308.1|
Ribosomal protein S11A (S18A) (rp41A) (YS12); Rps11ap
[Saccharomyces cerevisiae]
>gi|464719|sp|P26781|RS11_YEAST 40S RIBOSOMAL PROTEIN
S11 (S18) (YS12) (RP41) >gi|626900|pir||S41784 ribosomal
protein S11.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|295653|gb|AAC37411.1| (L15408) ribosomal
protein S18 [Saccharomyces cerevisiae]
>gi|311132|gb|AAC37410.1| (L17004) ribosomal protein S18
[Saccharomyces cerevisiae] >gi|602085|emb|CAA84990.1|
(Z35917) ORF YBR048w [Saccharomyces cerevisiae]
>gi|642297|emb|CAA87804.1| (Z47814) Rps18ap
[Saccharomyces cerevisiae] >gi|1216233|emb|CAA65218.1|
(X95966) 40S ribosomal protein [Saccharomyces
cerevisiae] >gi|1431458|emb|CAA98846.1| (Z74321) ORF
YDR025w [Saccharomyces cerevisiae]
Length = 156
Score = 85.0 bits (207), Expect = 3e-16
Identities = 41/111 (36%), Positives = 60/111 (53%), Gaps = 4/111 (3%)
Query: 2 EKMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYY 57
++ ++ GL + P + D KCP+ G + I G++ G VVS K +T+ + R Y
Sbjct: 32 KRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYL 91
Query: 58 HYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
HY+ KY RYE R + H P +VGD V + + RP+SKT F VV V
Sbjct: 92 HYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV 142
>emb|CAA86390.1| (Z46260) ribosomal protein S18 [Saccharomyces cerevisiae]
Length = 147
Score = 85.0 bits (207), Expect = 3e-16
Identities = 41/111 (36%), Positives = 60/111 (53%), Gaps = 4/111 (3%)
Query: 2 EKMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYY 57
++ ++ GL + P + D KCP+ G + I G++ G VVS K +T+ + R Y
Sbjct: 23 KRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYL 82
Query: 58 HYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
HY+ KY RYE R + H P +VGD V + + RP+SKT F VV V
Sbjct: 83 HYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV 133
>emb|CAA84991.1| (Z35918) ORF YBR048w [Saccharomyces cerevisiae]
Length = 141
Score = 85.0 bits (207), Expect = 3e-16
Identities = 41/111 (36%), Positives = 60/111 (53%), Gaps = 4/111 (3%)
Query: 2 EKMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYY 57
++ ++ GL + P + D KCP+ G + I G++ G VVS K +T+ + R Y
Sbjct: 17 KRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYL 76
Query: 58 HYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAV 108
HY+ KY RYE R + H P +VGD V + + RP+SKT F VV V
Sbjct: 77 HYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKV 127
>gb|AAB63874.1| (U97382) 40S ribosomal protein S11 homolog [Schizosaccharomyces
pombe]
Length = 93
Score = 73.7 bits (178), Expect = 7e-13
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 9 GLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYE 64
GL + PAE D D KCP+ G + I GR+ G VVS K +T+ + R+Y H++ KY
Sbjct: 1 GLGFKTPAEAIDGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYN 60
Query: 65 RYELRRSRIHAHNPPCINAKVGDRVLIAE 93
RYE R + AH P GD V + +
Sbjct: 61 RYEKRHKNLAAHVSPAFRINEGDVVTVGQ 89
>sp|P52812|RS11_ANOGA 40S RIBOSOMAL PROTEIN S11 >gi|1220139|emb|CAA93817.1| (Z69977)
ribosomal protein RS11 [Anopheles gambiae]
Length = 151
Score = 71.0 bits (171), Expect = 5e-12
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 3 KMVRDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVT---VERQ 55
+M IGL + P E D KCP+ GH+ I GR+ G+V RK + + R
Sbjct: 30 RMHHSIGLGFKTPKEAITGTYIDKKCPFTGHISIRGRILTGVV-----RKCIVLLYIRRD 84
Query: 56 YYHYLKKYERYELRRSRIHAHNPPCI-NAKVGDRVLIAETRPLSKTKHFVVVAVLERAEE 114
Y +++KY+ +E R + H PC + + GD V + E RPLSKT F V+ + A
Sbjct: 85 YLQFIRKYDTFEKRNRNMRLHLSPCFRDVEAGDIVTLGECRPLSKTVRFNVLKESKMAGS 144
Query: 115 RR 116
++
Sbjct: 145 KK 146
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.140 0.433
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44167066
Number of Sequences: 2977
Number of extensions: 1601180
Number of successful extensions: 3411
Number of sequences better than 1.0e-10: 45
Number of HSP's better than 0.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3362
Number of HSP's gapped (non-prelim): 45
length of query: 116
length of database: 189,106,746
effective HSP length: 48
effective length of query: 68
effective length of database: 160,379,370
effective search space: 10905797160
effective search space used: 10905797160
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)