BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2128 (rpl24P) DE:LSU ribosomal protein L24P (rpl24P)
(121 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75146 lsu ribosomal protein l24p (rpl24p) PAB2128 - Pyroco... 246 8e-65
sp|O59429|RL24_PYRHO 50S RIBOSOMAL PROTEIN L24P >gi|7441027|pir|... 234 3e-61
sp|Q9YF83|RL24_AERPE 50S RIBOSOMAL PROTEIN L24P >gi|7441031|pir|... 178 2e-44
sp|O26122|RL24_METTH 50S RIBOSOMAL PROTEIN L24P >gi|7441028|pir|... 176 7e-44
sp|P54038|RL24_METJA 50S RIBOSOMAL PROTEIN L24P >gi|2119143|pir|... 153 8e-37
gi|11499498 LSU ribosomal protein L24P (rpl24P) [Archaeoglobus f... 140 5e-33
sp|P14034|RL24_METVA 50S RIBOSOMAL PROTEIN L24P >gi|71313|pir||R... 131 3e-30
gi|4506621 ribosomal protein L26 [Homo sapiens] >gi|6677777|ref|... 118 2e-26
gb|AAA60279.1| (L07287) ribosomal protein L26 [Homo sapiens] 118 2e-26
gi|11440636 ribosomal protein L26 homolog [Homo sapiens] 118 2e-26
pir||T18476 hypothetical protein C0535w - malaria parasite (Plas... 118 2e-26
gi|7705813 ribosomal protein L26 homolog [Homo sapiens] >gi|5106... 118 2e-26
gb|AAF49215.1| (AE003519) CG6846 gene product [Drosophila melano... 116 7e-26
sp|P12749|RL26_RAT 60S RIBOSOMAL PROTEIN L26 >gi|71312|pir||R5RT... 115 1e-25
sp|P47832|RL26_CHICK 60S RIBOSOMAL PROTEIN L26 >gi|505327|gb|AAA... 115 2e-25
sp|P10972|RL24_HALMA 50S RIBOSOMAL PROTEIN L24P (HMAL24) (HL16) ... 114 4e-25
pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Sub... 114 4e-25
gb|AAK41008.1| LSU ribosomal protein L24AB (rpl24AB) [Sulfolobus... 111 2e-24
sp|Q9UX95|RL24_SULSO 50S RIBOSOMAL PROTEIN L24P >gi|6015770|emb|... 111 2e-24
prf||1501256A ribosomal protein L16 [Haloarcula marismortui] 108 2e-23
dbj|BAB08459.1| (AB013390) 60S ribosomal protein L26 [Arabidopsi... 105 2e-22
sp|Q19869|RL26_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L26 >gi|7500... 102 2e-21
sp|P78946|RL26_SCHPO 60S RIBOSOMAL PROTEIN L26 >gi|1236272|dbj|B... 101 3e-21
gb|AAC64166.1| (AF093540) ribosomal protein L26 [Zea mays] 101 4e-21
pir||T46057 60S RIBOSOMAL PROTEIN-like - Arabidopsis thaliana >g... 101 4e-21
gb|AAG19947.1| (AE005077) 50S ribosomal protein L24P; Rpl24p [Ha... 101 4e-21
gi|6323376 Ribosomal protein L26A (L33A) (YL33); Rpl26ap [Saccha... 95 3e-19
gi|6321471 Ribosomal protein L26B (L33B) (YL33); Rpl26bp [Saccha... 94 4e-19
sp|P53221|R262_YEAST 60S RIBOSOMAL PROTEIN L26-B (YL33) 94 4e-19
sp|Q39411|RL26_BRARA 60S RIBOSOMAL PROTEIN L26 >gi|2160300|dbj|B... 90 6e-18
pir||T21490 hypothetical protein F28C6.7b - Caenorhabditis elega... 89 2e-17
sp|P51414|RL26_ARATH 60S RIBOSOMAL PROTEIN L26 75 3e-13
sp|O05633|RL24_SULAC 50S RIBOSOMAL PROTEIN L24P >gi|2052257|emb|... 67 9e-11
>pir||E75146 lsu ribosomal protein l24p (rpl24p) PAB2128 - Pyrococcus abyssi
(strain Orsay) >gi|5457762|emb|CAB49252.1| (AJ248284)
LSU ribosomal protein L24P (rpl24P) [Pyrococcus abyssi]
Length = 121
Score = 246 bits (621), Expect = 8e-65
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MRLNSKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFK 60
MRLNSKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFK
Sbjct: 1 MRLNSKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFK 60
Query: 61 GHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
GHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA
Sbjct: 61 GHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
Query: 121 G 121
G
Sbjct: 121 G 121
>sp|O59429|RL24_PYRHO 50S RIBOSOMAL PROTEIN L24P >gi|7441027|pir||C71186 probable
ribosomal protein L24 - Pyrococcus horikoshii
>gi|3258199|dbj|BAA30882.1| (AP000007) 124aa long
hypothetical 50S ribosomal protein L24 [Pyrococcus
horikoshii]
Length = 124
Score = 234 bits (591), Expect = 3e-61
Identities = 112/121 (92%), Positives = 119/121 (97%)
Query: 1 MRLNSKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFK 60
M++NSKQPRKQRKFLYNAPLH+RQKMM+APLSKELREKYK+RNLPVRVGDKVRIMRGDFK
Sbjct: 4 MKMNSKQPRKQRKFLYNAPLHVRQKMMSAPLSKELREKYKVRNLPVRVGDKVRIMRGDFK 63
Query: 61 GHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
G+EGKVVEVDLKRYRIYVEG TLRK NGTEVFYPIHPSNVMIIELNLDDE+RKKIIERRA
Sbjct: 64 GYEGKVVEVDLKRYRIYVEGVTLRKVNGTEVFYPIHPSNVMIIELNLDDEKRKKIIERRA 123
Query: 121 G 121
G
Sbjct: 124 G 124
>sp|Q9YF83|RL24_AERPE 50S RIBOSOMAL PROTEIN L24P >gi|7441031|pir||E72727 probable
ribosomal protein L24 APE0358 - Aeropyrum pernix
(strain K1) >gi|5103997|dbj|BAA79313.1| (AP000059) 132aa
long hypothetical 50S ribosomal protein L24 [Aeropyrum
pernix]
Length = 132
Score = 178 bits (447), Expect = 2e-44
Identities = 84/116 (72%), Positives = 101/116 (86%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S+QPRKQR+ LY APLH RQK+++A LS ELREKY +R+LPVR GDKVR+MRGDFKGHEG
Sbjct: 7 SRQPRKQRRALYRAPLHARQKLVSATLSPELREKYGVRSLPVRKGDKVRVMRGDFKGHEG 66
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
KVV+VDL+R RIY++G T+ K +GT VF PIHPSNVMI+EL+L DE RKK+IERRA
Sbjct: 67 KVVKVDLRRLRIYIDGVTVTKADGTPVFRPIHPSNVMIVELDLSDEYRKKMIERRA 122
>sp|O26122|RL24_METTH 50S RIBOSOMAL PROTEIN L24P >gi|7441028|pir||C69053 ribosomal
protein L24 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621042|gb|AAB84515.1| (AE000795)
ribosomal protein L26 (E.coli L24) [Methanobacterium
thermoautotrophicum]
Length = 117
Score = 176 bits (442), Expect = 7e-44
Identities = 79/115 (68%), Positives = 103/115 (88%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
SKQPRKQRK++Y APLH R+KMM+A LS+ELRE+Y R+LP+R GDKV I+RGDF+GHEG
Sbjct: 2 SKQPRKQRKYIYEAPLHARRKMMSANLSRELREEYGRRSLPLRKGDKVEILRGDFRGHEG 61
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERR 119
KV +VDLKRYR+YVEGAT++K +GT V++P+HPSN+ I++LNLDDE+R KI+ER+
Sbjct: 62 KVEKVDLKRYRVYVEGATIQKVDGTTVYFPLHPSNLRIVDLNLDDEKRIKILERK 116
>sp|P54038|RL24_METJA 50S RIBOSOMAL PROTEIN L24P >gi|2119143|pir||C64358 ribosomal
protein L24 - Methanococcus jannaschii
>gi|1591169|gb|AAB98456.1| (U67497) LSU ribosomal
protein L24P (rplX) [Methanococcus jannaschii]
Length = 120
Score = 153 bits (382), Expect = 8e-37
Identities = 78/113 (69%), Positives = 93/113 (82%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
SKQPRKQRK L+NAPLHLR+K+M+A LSKEL+EK +PVR GD VRIMRGDFKG EG
Sbjct: 6 SKQPRKQRKALFNAPLHLRRKVMSAMLSKELKEKLGKNAIPVRKGDVVRIMRGDFKGLEG 65
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIE 117
+V++VDLKRYRIYVEGA ++ +G EV YPIHPSNVMII+L DE+R K I+
Sbjct: 66 EVIKVDLKRYRIYVEGANNKRQDGREVPYPIHPSNVMIIKLYDKDEKRFKHIK 118
>gi|11499498 LSU ribosomal protein L24P (rpl24P) [Archaeoglobus fulgidus]
>gi|3914715|sp|O28365|RL24_ARCFU 50S RIBOSOMAL PROTEIN
L24P >gi|7441029|pir||A69489 LSU ribosomal protein L24P
(rpl24P) homolog - Archaeoglobus fulgidus
>gi|2648629|gb|AAB89339.1| (AE000971) LSU ribosomal
protein L24P (rpl24P) [Archaeoglobus fulgidus]
Length = 120
Score = 140 bits (350), Expect = 5e-33
Identities = 73/115 (63%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 5 SKQPRKQRKFLYN-APLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE 63
SKQPRKQR++LY A LH R K++ A LSK+LR+KY R + VR GDKVRIMRG F GHE
Sbjct: 6 SKQPRKQRRWLYKTAKLHERHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHE 65
Query: 64 GKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIER 118
G+V+EVD+KR RI V+G T+ K +GTEV PIHPSNVMI + DE RKKI+ER
Sbjct: 66 GRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMITDFGEVDEVRKKILER 120
>sp|P14034|RL24_METVA 50S RIBOSOMAL PROTEIN L24P >gi|71313|pir||R5MX24 ribosomal protein
L24 - Methanococcus vannielii >gi|44759|emb|CAA34691.1|
(X16720) rpL24 (AA 1-119) [Methanococcus vannielii]
Length = 119
Score = 131 bits (326), Expect = 3e-30
Identities = 65/111 (58%), Positives = 81/111 (72%)
Query: 4 NSKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE 63
NSKQPRKQRK LYNAPLHLR +M+A LSK L+EKY LPV+ GD V+++RG FKG E
Sbjct: 5 NSKQPRKQRKALYNAPLHLRNSVMSAMLSKALKEKYGKNALPVKKGDTVKVLRGSFKGIE 64
Query: 64 GKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKK 114
G+V +V+ Y+I VEG +K +G E YPIHPSNVMI ++ DE+R K
Sbjct: 65 GEVSKVNYSGYKIIVEGVVNKKQDGKETPYPIHPSNVMITKMEDSDEKRFK 115
>gi|4506621 ribosomal protein L26 [Homo sapiens] >gi|6677777|ref|NP_033106.1|
ribosomal protein L26 [Mus musculus]
>gi|11426751|ref|XP_008492.1| ribosomal protein L26
[Homo sapiens] >gi|400990|sp|Q02877|RL26_HUMAN 60S
RIBOSOMAL PROTEIN L26 >gi|423068|pir||S33713 ribosomal
protein L26, cytosolic - human >gi|1071990|pir||S48864
ribosomal protein L26 - mouse >gi|36115|emb|CAA49189.1|
(X69392) ribosomal protein L26 [Homo sapiens]
>gi|565624|emb|CAA56716.1| (X80699) L26 [Mus musculus]
Length = 145
Score = 118 bits (294), Expect = 2e-26
Identities = 59/112 (52%), Positives = 83/112 (73%), Gaps = 2/112 (1%)
Query: 10 KQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE-GKVVE 68
K RK +NAP H+R+K+M++PLSKELR+KY +R++P+R D+V+++RG +KG + GKVV+
Sbjct: 13 KNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQ 72
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V K+Y IY+E K NGT V IHPS V+I L LD + RKKI+ER+A
Sbjct: 73 VYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD-RKKILERKA 123
>gb|AAA60279.1| (L07287) ribosomal protein L26 [Homo sapiens]
Length = 145
Score = 118 bits (294), Expect = 2e-26
Identities = 59/112 (52%), Positives = 83/112 (73%), Gaps = 2/112 (1%)
Query: 10 KQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE-GKVVE 68
K RK +NAP H+R+K+M++PLSKELR+KY +R++P+R D+V+++RG +KG + GKVV+
Sbjct: 13 KNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQ 72
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V K+Y IY+E K NGT V IHPS V+I L LD + RKKI+ER+A
Sbjct: 73 VYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD-RKKILERKA 123
>gi|11440636 ribosomal protein L26 homolog [Homo sapiens]
Length = 145
Score = 118 bits (294), Expect = 2e-26
Identities = 58/112 (51%), Positives = 83/112 (73%), Gaps = 2/112 (1%)
Query: 10 KQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE-GKVVE 68
K RK +NAP H+R+K+M++PLSKELR+KY +R++P+R D+V+++RG +KG + GKV++
Sbjct: 13 KNRKRYFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVIQ 72
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V K+Y IY+E K NGT V IHPS V+I L LD + RKKI+ER+A
Sbjct: 73 VYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD-RKKILERKA 123
>pir||T18476 hypothetical protein C0535w - malaria parasite (Plasmodium
falciparum) >gi|3764026|emb|CAA15619.1| (AL008970)
putative 60S Ribosomal protein L26 [Plasmodium
falciparum]
Length = 126
Score = 118 bits (293), Expect = 2e-26
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S RK RK + AP LR+K+M++ LSKELR KYK R+LPVR D+V I RG G EG
Sbjct: 8 SSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREG 67
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
KVV+++ KRY+IYVE T K NG F IHPSNV++ +L + D+ RKKI++R+A
Sbjct: 68 KVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKV-DKNRKKILDRKA 122
>gi|7705813 ribosomal protein L26 homolog [Homo sapiens]
>gi|5106791|gb|AAD39846.1| (AF083248) ribosomal protein
L26 homolog [Homo sapiens]
Length = 145
Score = 118 bits (293), Expect = 2e-26
Identities = 59/112 (52%), Positives = 83/112 (73%), Gaps = 2/112 (1%)
Query: 10 KQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE-GKVVE 68
K RK +NAP H+R+K+M++PLSKELR+KY +R++P+R D+V+++RG +KG + GKVV+
Sbjct: 13 KNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQ 72
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V K+Y IY+E K NGT V IHPS V+I L LD + RKKI+ER+A
Sbjct: 73 VYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD-RKKILERKA 123
>gb|AAF49215.1| (AE003519) CG6846 gene product [Drosophila melanogaster]
Length = 149
Score = 116 bits (289), Expect = 7e-26
Identities = 57/116 (49%), Positives = 84/116 (72%), Gaps = 2/116 (1%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE- 63
S RK RK + AP H+R+++M+APLSKELR+KY +R++P+R D+V+++RG FKG++
Sbjct: 8 SSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRGHFKGNQV 67
Query: 64 GKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERR 119
GKVV+ K++ +YVE NGT V+ IHPS V+I++L LD + RK I+ERR
Sbjct: 68 GKVVQAYRKKFVVYVEKIQRENANGTNVYVGIHPSKVLIVKLKLDKD-RKAILERR 122
>sp|P12749|RL26_RAT 60S RIBOSOMAL PROTEIN L26 >gi|71312|pir||R5RT26 ribosomal protein
L26, cytosolic [validated] - rat
>gi|57692|emb|CAA32801.1| (X14671) rpl 26 (AA 1-145)
[Rattus rattus] >gi|226411|prf||1511091A ribosomal
protein L26 [Rattus norvegicus]
Length = 145
Score = 115 bits (286), Expect = 1e-25
Identities = 58/112 (51%), Positives = 82/112 (72%), Gaps = 2/112 (1%)
Query: 10 KQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE-GKVVE 68
K RK +NAP H+R+K+M++PLSKELR+KY +R++P+R D+V+++RG +KG + GKVV+
Sbjct: 13 KNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQ 72
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V K+Y IY+E K NGT V I PS V+I L LD + RKKI+ER+A
Sbjct: 73 VYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKD-RKKILERKA 123
>sp|P47832|RL26_CHICK 60S RIBOSOMAL PROTEIN L26 >gi|505327|gb|AAA48934.1| (L34018)
ribosomal protein L26 [Gallus gallus]
Length = 128
Score = 115 bits (285), Expect = 2e-25
Identities = 56/106 (52%), Positives = 80/106 (74%), Gaps = 2/106 (1%)
Query: 16 YNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHE-GKVVEVDLKRY 74
+NAP H+R+K+M++PLSKELR+KY +R++P+R D+V+++RG +KG + GKVV+V K+Y
Sbjct: 2 FNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKY 61
Query: 75 RIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
IY+E K NGT V IHPS V+I L LD + RKKI+ER+A
Sbjct: 62 VIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD-RKKILERKA 106
>sp|P10972|RL24_HALMA 50S RIBOSOMAL PROTEIN L24P (HMAL24) (HL16) (HL15)
>gi|71314|pir||R5HS24 ribosomal protein L24 [validated]
- Haloarcula marismortui >gi|43615|emb|CAA39019.1|
(X55311) ribosomal protein HmaL24 [Haloarcula
marismortui]
Length = 120
Score = 114 bits (282), Expect = 4e-25
Identities = 58/113 (51%), Positives = 77/113 (67%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
SKQP KQRK APLH R K + A LS +LRE+Y RN+ V GD V ++RGDF G EG
Sbjct: 2 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEG 61
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIE 117
+V+ VDL + I+VE TL KT+G EV P+ SNV + +L+L+DE+R+ +E
Sbjct: 62 EVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLE 114
>pdb|1FFK|Q Chain Q, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 119
Score = 114 bits (282), Expect = 4e-25
Identities = 58/113 (51%), Positives = 77/113 (67%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
SKQP KQRK APLH R K + A LS +LRE+Y RN+ V GD V ++RGDF G EG
Sbjct: 1 SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEG 60
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIE 117
+V+ VDL + I+VE TL KT+G EV P+ SNV + +L+L+DE+R+ +E
Sbjct: 61 EVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLE 113
>gb|AAK41008.1| LSU ribosomal protein L24AB (rpl24AB) [Sulfolobus solfataricus]
Length = 119
Score = 111 bits (276), Expect = 2e-24
Identities = 55/114 (48%), Positives = 78/114 (68%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S +P KQRK LY PLH R+K++ A +S ++ +Y I+ + VR GD VR+MRG G EG
Sbjct: 3 SLKPSKQRKLLYTLPLHQRKKLLVAKVSDDIASQYGIKRIRVRKGDTVRVMRGGNSGKEG 62
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIER 118
KVVEV+ K R+ +EG T +K +GT V+ IH S VMI +L+L D RR++ +E+
Sbjct: 63 KVVEVNTKTGRLAIEGITRKKVDGTPVYVWIHASKVMITKLDLSDPRRREKLEK 116
>sp|Q9UX95|RL24_SULSO 50S RIBOSOMAL PROTEIN L24P >gi|6015770|emb|CAB57597.1| (Y18930)
ribosomal protein L24 (HMAL24) [Sulfolobus solfataricus]
Length = 119
Score = 111 bits (276), Expect = 2e-24
Identities = 55/114 (48%), Positives = 78/114 (68%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S +P KQRK LY PLH R+K++ A +S ++ +Y I+ + VR GD VR+MRG G EG
Sbjct: 3 SLKPSKQRKLLYTLPLHQRKKLLVAKVSDDIASQYGIKRIRVRKGDTVRVMRGGNSGKEG 62
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIER 118
KVVEV+ K R+ +EG T +K +GT V+ IH S VMI +L+L D RR++ +E+
Sbjct: 63 KVVEVNTKTGRLAIEGITRKKVDGTPVYVWIHASKVMITKLDLSDPRRREKLEK 116
>prf||1501256A ribosomal protein L16 [Haloarcula marismortui]
Length = 118
Score = 108 bits (268), Expect = 2e-23
Identities = 57/113 (50%), Positives = 77/113 (67%), Gaps = 1/113 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
SKQP KQRK APLH R+K + LS +LRE+Y RN+ V GD V ++RGDF G EG
Sbjct: 1 SKQPDKQRKSQRRAPLHERRKQVRT-LSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEG 59
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIE 117
+V+ VDL + I+VE TL KT+G EV P+ SNV + +L+L+DE+R+ +E
Sbjct: 60 EVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLE 112
>dbj|BAB08459.1| (AB013390) 60S ribosomal protein L26 [Arabidopsis thaliana]
Length = 146
Score = 105 bits (259), Expect = 2e-22
Identities = 51/116 (43%), Positives = 82/116 (69%), Gaps = 1/116 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S RK RK + AP +R+ +M++PLSK+LR K+ +R++P+R D+V+++RG FKG EG
Sbjct: 8 SSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREG 67
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
KV++V +++ I++E T K NG+ V ++ SNVMI +L LD + RK ++ER+A
Sbjct: 68 KVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKD-RKSLLERKA 122
>sp|Q19869|RL26_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L26 >gi|7500062|pir||T21486
hypothetical protein F28C6.7a - Caenorhabditis elegans
>gi|3876357|emb|CAA92674.1| (Z68315) Similarity to Human
ribosomal protein L26 (SW:RL26_HUMAN), contains
similarity to Pfam domain: PF00467 (KOW motif),
Score=86.2, E-value=2.1e-22, N=1~cDNA EST yk633a7.3
comes from this gene; cDNA EST yk633a7.5 comes from this
gene~cDNA EST yk67>
Length = 142
Score = 102 bits (251), Expect = 2e-21
Identities = 52/116 (44%), Positives = 77/116 (65%), Gaps = 1/116 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S K RK +NAP H R+++M+APL+KELR K+ IR +P+R D+V +MRG KG+ G
Sbjct: 8 SSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTG 67
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
+V+ K++ I+++ T K NG+ V IHPS V I +L LD +RR ++ER+A
Sbjct: 68 RVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRR-ALVERKA 122
>sp|P78946|RL26_SCHPO 60S RIBOSOMAL PROTEIN L26 >gi|1236272|dbj|BAA12196.1| (D83993)
putative ribosomal protein L26, most similer to pir:
S51347 (68.6% identity in 121 aa overlap)
[Schizosaccharomyces pombe] >gi|9955815|emb|CAC05512.1|
(AL391603) 60s ribosomal protein l26
[Schizosaccharomyces pombe]
Length = 126
Score = 101 bits (249), Expect = 3e-21
Identities = 53/113 (46%), Positives = 75/113 (65%), Gaps = 1/113 (0%)
Query: 9 RKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVE 68
RKQRK + AP +R+ +M+APLSKELRE+YKIR+LPVR D++ ++RG KG EGK+
Sbjct: 12 RKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGREGKITS 71
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRAG 121
V K++ + +E T K NG I S V+I +L+LD + RK +I R+ G
Sbjct: 72 VYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKD-RKDLIVRKGG 123
>gb|AAC64166.1| (AF093540) ribosomal protein L26 [Zea mays]
Length = 121
Score = 101 bits (248), Expect = 4e-21
Identities = 49/104 (47%), Positives = 73/104 (70%)
Query: 9 RKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVE 68
RK RK + AP +R+ +M+A LS ELR KY +R++P+R D+V+++RG +KG EGKVV+
Sbjct: 12 RKCRKAHFTAPSSVRRVLMSAGLSTELRHKYNVRSIPIRKDDEVQVVRGTYKGREGKVVQ 71
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERR 112
V +R+ I+VE T K NG+ V IHPS V++ +L LD +R+
Sbjct: 72 VYRRRWVIHVERITREKVNGSTVNVGIHPSKVIVTKLKLDKDRK 115
>pir||T46057 60S RIBOSOMAL PROTEIN-like - Arabidopsis thaliana
>gi|6723436|emb|CAB66929.1| (AL132965) 60S RIBOSOMAL
PROTEIN-like [Arabidopsis thaliana]
Length = 146
Score = 101 bits (248), Expect = 4e-21
Identities = 51/112 (45%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 9 RKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVE 68
RK RK + A R+ +M++PLS +LR+KY +R++P+R D+V+I+RG +KG EGKVV+
Sbjct: 12 RKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQ 71
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V +++ I++E T K NGT V I PS V+I +L LD + RK ++ER+A
Sbjct: 72 VYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKD-RKSLLERKA 122
>gb|AAG19947.1| (AE005077) 50S ribosomal protein L24P; Rpl24p [Halobacterium sp.
NRC-1]
Length = 118
Score = 101 bits (248), Expect = 4e-21
Identities = 50/113 (44%), Positives = 73/113 (64%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S+QP KQR A LH +Q + A LS+ELRE+Y RN+ V VGD V +MRGD G +G
Sbjct: 2 SEQPHKQRTRTKRASLHEKQDQVRATLSEELREEYGQRNVRVNVGDTVEVMRGDDAGEDG 61
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIE 117
+V +VDL+ ++VEG T+ +G E P+ SN+ + +L+LDD+ R + +E
Sbjct: 62 EVTDVDLRDAEVFVEGVTVEAADGEETPRPVESSNLRVTDLDLDDDMRVERLE 114
>gi|6323376 Ribosomal protein L26A (L33A) (YL33); Rpl26ap [Saccharomyces
cerevisiae] >gi|1710574|sp|P05743|R261_YEAST 60S
RIBOSOMAL PROTEIN L26-A (YL33) >gi|1071991|pir||S51347
ribosomal protein L26.e.A, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|609383|gb|AAB67254.1|
(U19028) Ylr344wp [Saccharomyces cerevisiae]
Length = 127
Score = 94.8 bits (232), Expect = 3e-19
Identities = 49/117 (41%), Positives = 74/117 (62%), Gaps = 1/117 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S RK RK + AP R+ +++APLSKELR +Y I+ LP+R D+V ++RG KG EG
Sbjct: 9 SSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEG 68
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRAG 121
K+ V ++ + V+ T K NG V +HPS ++I +L+LD + RK +I+R+ G
Sbjct: 69 KISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKD-RKALIQRKGG 124
>gi|6321471 Ribosomal protein L26B (L33B) (YL33); Rpl26bp [Saccharomyces
cerevisiae] >gi|2119142|pir||S64325 ribosomal protein
L26.e.B, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|1360155|emb|CAA97022.1| (Z72819) ORF YGR034w
[Saccharomyces cerevisiae]
Length = 129
Score = 94.4 bits (231), Expect = 4e-19
Identities = 49/117 (41%), Positives = 74/117 (62%), Gaps = 1/117 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S RK RK + AP R+ +++APLSKELR +Y I+ LP+R D+V ++RG KG EG
Sbjct: 11 SSDRRKARKAYFTAPSSERRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEG 70
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRAG 121
K+ V ++ + V+ T K NG V +HPS ++I +L+LD + RK +I+R+ G
Sbjct: 71 KISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKD-RKALIQRKGG 126
>sp|P53221|R262_YEAST 60S RIBOSOMAL PROTEIN L26-B (YL33)
Length = 127
Score = 94.4 bits (231), Expect = 4e-19
Identities = 49/117 (41%), Positives = 74/117 (62%), Gaps = 1/117 (0%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S RK RK + AP R+ +++APLSKELR +Y I+ LP+R D+V ++RG KG EG
Sbjct: 9 SSDRRKARKAYFTAPSSERRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEG 68
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRAG 121
K+ V ++ + V+ T K NG V +HPS ++I +L+LD + RK +I+R+ G
Sbjct: 69 KISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKD-RKALIQRKGG 124
>sp|Q39411|RL26_BRARA 60S RIBOSOMAL PROTEIN L26 >gi|2160300|dbj|BAA18941.1| (D78495)
ribosomal protein [Brassica rapa]
Length = 146
Score = 90.5 bits (221), Expect = 6e-18
Identities = 45/112 (40%), Positives = 74/112 (65%), Gaps = 1/112 (0%)
Query: 9 RKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVE 68
R+ RK + A R+ M++PLS +LR+KY +R++P+R D+ +I+RG +KG EGK+ +
Sbjct: 12 RRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQ 71
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERRKKIIERRA 120
V ++ I++E T K NGT V + P+ V+I +L LD + RK ++ER+A
Sbjct: 72 VYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKD-RKSLLERKA 122
>pir||T21490 hypothetical protein F28C6.7b - Caenorhabditis elegans
>gi|3876361|emb|CAA92678.1| (Z68315) contains similarity
to Pfam domain: PF00467 (KOW motif), Score=79.6,
E-value=2.1e-20, N=1~cDNA EST yk82g12.3 comes from this
gene~cDNA EST yk82g12.5 comes from this gene~cDNA EST
yk559a1.3 comes from this gene [Caenorhabditis elegans]
Length = 106
Score = 88.9 bits (217), Expect = 2e-17
Identities = 43/99 (43%), Positives = 64/99 (64%)
Query: 5 SKQPRKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEG 64
S K RK +NAP H R+++M+APL+KELR K+ IR +P+R D+V +MRG KG+ G
Sbjct: 8 SSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGNTG 67
Query: 65 KVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMII 103
+V+ K++ I+++ T K NG+ V IHPS V +
Sbjct: 68 RVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVRFV 106
>sp|P51414|RL26_ARATH 60S RIBOSOMAL PROTEIN L26
Length = 87
Score = 74.9 bits (181), Expect = 3e-13
Identities = 37/87 (42%), Positives = 58/87 (66%)
Query: 9 RKQRKFLYNAPLHLRQKMMAAPLSKELREKYKIRNLPVRVGDKVRIMRGDFKGHEGKVVE 68
RK RK + A R+ + ++PLS +L +KY +R++P+R D+V+I+RG KG EGKVV+
Sbjct: 1 RKNRKAHFTAXSSERRVIXSSPLSTDLXQKYXVRSIPIRKDDEVQIVRGTSKGREGKVVQ 60
Query: 69 VDLKRYRIYVEGATLRKTNGTEVFYPI 95
V +++ I++E T K NGT V + I
Sbjct: 61 VYRRKWVIHIERITREKVNGTPVTFGI 87
>sp|O05633|RL24_SULAC 50S RIBOSOMAL PROTEIN L24P >gi|2052257|emb|CAA69088.1| (Y07778)
ribosomal protein L24 [Sulfolobus acidocaldarius]
Length = 84
Score = 66.7 bits (160), Expect = 9e-11
Identities = 32/67 (47%), Positives = 46/67 (67%)
Query: 53 RIMRGDFKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLDDERR 112
++MRG G+EGKVVEVD KR R+ +EG T +K +GT V+ +H S V+I +L+ D+ R
Sbjct: 1 KLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIITKLDTGDKER 60
Query: 113 KKIIERR 119
IER+
Sbjct: 61 MDAIERK 67
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43583174
Number of Sequences: 2977
Number of extensions: 1676887
Number of successful extensions: 3651
Number of sequences better than 1.0e-10: 33
Number of HSP's better than 0.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3602
Number of HSP's gapped (non-prelim): 34
length of query: 121
length of database: 189,106,746
effective HSP length: 53
effective length of query: 68
effective length of database: 157,386,935
effective search space: 10702311580
effective search space used: 10702311580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)