BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2130 (rpl5P) DE:LSU ribosomal protein L5P (rpl5P)
(188 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75146 lsu ribosomal protein l5p (rpl5p) PAB2130 - Pyrococc... 382 e-105
sp|O59431|RL5_PYRHO 50S RIBOSOMAL PROTEIN L5P >gi|7440674|pir||A... 367 e-101
sp|Q9YF87|RL5_AERPE 50S RIBOSOMAL PROTEIN L5P >gi|7440677|pir||A... 220 6e-57
gb|AAK41006.1| LSU ribosomal protein L5AB (rpl5AB) [Sulfolobus s... 215 3e-55
sp|Q9UX93|RL5_SULSO 50S RIBOSOMAL PROTEIN L5P >gi|6015772|emb|CA... 215 3e-55
sp|P54040|RL5_METJA 50S RIBOSOMAL PROTEIN L5P >gi|2119107|pir||E... 215 3e-55
sp|O26124|RL5_METTH 50S RIBOSOMAL PROTEIN L5P >gi|7440673|pir||E... 207 8e-53
sp|P41202|RL5_SULAC 50S RIBOSOMAL PROTEIN L5P >gi|243187|gb|AAB2... 205 2e-52
sp|P14029|RL5_METVA 50S RIBOSOMAL PROTEIN L5P >gi|71105|pir||R5M... 194 6e-49
gi|11499496 LSU ribosomal protein L5P (rpl5P) [Archaeoglobus ful... 180 1e-44
gb|AAG19949.1| (AE005077) 50S ribosomal protein L5P; Rpl5p [Halo... 172 2e-42
gi|6321522 60S ribosomal protein L11B (L16B) (rp39B) (YL22); Rpl... 170 8e-42
gi|6325359 Ribosomal protein L11A (L16A) (rp39A) (YL22); Rpl11ap... 170 8e-42
emb|CAA25515.1| (X01029) ribosomal protein L16 [Saccharomyces pa... 169 2e-41
pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Sub... 162 2e-39
sp|P14124|RL5_HALMA 50S RIBOSOMAL PROTEIN L5P (HMAL5) (HL13) >gi... 162 2e-39
sp|Q10157|RL11_SCHPO 60S RIBOSOMAL PROTEIN L11 >gi|7490009|pir||... 160 9e-39
gb|AAF57560.1| (AE003796) RpL11 gene product [Drosophila melanog... 158 4e-38
sp|P39026|RL11_HUMAN 60S RIBOSOMAL PROTEIN L11 >gi|71106|pir||R5... 158 5e-38
emb|CAC12883.1| (AJ295006) ribosomal protein L11-like [Nicotiana... 157 8e-38
dbj|BAA92964.1| (AP001551) ESTs D15590(C0900),D48950(S15542),D22... 156 1e-37
gb|AAF13719.1|AF201080_1 (AF201080) ribosomal protein L11 [Schiz... 156 2e-37
gi|4506595 ribosomal protein L11 [Homo sapiens] >gi|631361|pir||... 155 2e-37
gi|11423082 ribosomal protein L11 [Homo sapiens] 155 4e-37
sp|P42795|R111_ARATH 60S RIBOSOMAL PROTEIN L11A (L16A) >gi|62493... 155 4e-37
sp|P50881|RL11_CHLRE 60S RIBOSOMAL PROTEIN L11 >gi|7440679|pir||... 154 5e-37
sp|P46287|RL11_MEDSA 60S RIBOSOMAL PROTEIN L11 (L5) >gi|541961|p... 154 7e-37
sp|P42796|R112_ARATH 60S RIBOSOMAL PROTEIN L11B (L16B) >gi|74406... 153 9e-37
pir||T49153 ribosomal protein L11-like - Arabidopsis thaliana >g... 153 9e-37
sp|P46222|RL11_DROME 60S RIBOSOMAL PROTEIN L11 >gi|2119109|pir||... 153 2e-36
emb|CAB40967.1| (AJ238271) ribosomal protein L11 [Oryzias latipes] 153 2e-36
sp|P42794|RL11_ARATH 60S RIBOSOMAL PROTEIN L11 (L16) >gi|629552|... 152 3e-36
pir||T29860 hypothetical protein F07D10.1 - Caenorhabditis elega... 151 6e-36
sp|Q94300|RL11_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L11 >gi|7508... 148 3e-35
sp|P42922|RL11_LEICH 60S RIBOSOMAL PROTEIN L11 >gi|559581|gb|AAC... 148 5e-35
sp|Q56231|RL5_THEAC 50S RIBOSOMAL PROTEIN L5P >gi|7484228|pir||T... 148 5e-35
sp|P24119|RL11_TETTH 60S RIBOSOMAL PROTEIN L11 (L21) >gi|84358|p... 147 7e-35
sp|P48157|RL11_LEIMA 60S RIBOSOMAL PROTEIN L11 >gi|577833|gb|AAC... 147 9e-35
sp|O22540|RL11_ORYSA 60S RIBOSOMAL PROTEIN L11 >gi|7440682|pir||... 146 1e-34
sp|Q29205|RL11_PIG 60S RIBOSOMAL PROTEIN L11 146 1e-34
gb|AAD21733.1| (AC006931) 60S ribosomal protein L11B [Arabidopsi... 146 2e-34
dbj|BAA12249.1| (D84173) ribosomal protein L11 [Paramecium cauda... 144 8e-34
gb|AAG13293.1|AF266173_1 (AF266173) 60S ribosomal protein L11 [G... 139 3e-32
sp|Q94793|RL11_TOXCA 60S RIBOSOMAL PROTEIN L11 >gi|1498473|gb|AA... 100 2e-20
pir||A83115 50S ribosomal protein L5 PA4251 [imported] - Pseudom... 96 2e-19
sp|P46178|RL5_BUCAK 50S RIBOSOMAL PROTEIN L5 >gi|632227|pir||JC2... 96 4e-19
sp|P02389|RL5_ECOLI 50S RIBOSOMAL PROTEIN L5 >gi|7428671|pir||R5... 95 5e-19
sp|P44346|RL5_HAEIN 50S RIBOSOMAL PROTEIN L5 >gi|1075256|pir||H6... 95 5e-19
sp|O67568|RL5_AQUAE 50S RIBOSOMAL PROTEIN L5 >gi|7440663|pir||G7... 93 2e-18
sp|Q9Z9K2|RL5_BACHD 50S RIBOSOMAL PROTEIN L5 >gi|11276701|pir||T... 92 3e-18
pir||B82058 ribosomal protein L5 VC2584 [imported] - Vibrio chol... 92 5e-18
sp|P12877|RL5_BACSU 50S RIBOSOMAL PROTEIN L5 (BL6) >gi|71099|pir... 91 7e-18
sp|P10136|RL5_MYCCA 50S RIBOSOMAL PROTEIN L5 >gi|71101|pir||R5YM... 91 7e-18
gb|AAD08795.1| (AF040101) ribosomal protein L5 [Aquifex pyrophilus] 89 3e-17
sp|Q9ZI40|RL5_AQUPY 50S RIBOSOMAL PROTEIN L5 89 3e-17
sp|P08895|RL5_BACST 50S RIBOSOMAL PROTEIN L5 >gi|71100|pir||R5BS... 89 4e-17
sp|P57579|RL5_BUCAI 50S RIBOSOMAL PROTEIN L5 >gi|10039171|dbj|BA... 89 4e-17
sp|O51443|RL5_BORBU 50S RIBOSOMAL PROTEIN L5 >gi|7440667|pir||A7... 87 1e-16
gi|11466362 ribosomal protein L5 [Mesostigma viride] >gi|7259505... 86 2e-16
sp|O52344|RL5_MYCGA 50S RIBOSOMAL PROTEIN L5 >gi|2766515|gb|AAB9... 86 3e-16
sp|P38517|RL5_THEMA 50S RIBOSOMAL PROTEIN L5 >gi|7440672|pir||H7... 85 7e-16
pir||D82718 50S ribosomal protein L5 XF1164 [imported] - Xylella... 85 7e-16
emb|CAA79789.1| (Z21677) ribosomal protein L5 [Thermotoga maritima] 84 1e-15
pir||S77490 ribosomal protein L5 - Synechocystis sp. (strain PCC... 83 2e-15
sp|P73308|RL5_SYNY3 50S RIBOSOMAL PROTEIN L5 83 2e-15
pir||C75535 ribosomal protein L5 - Deinococcus radiodurans (stra... 83 2e-15
pir||D81232 50S ribosomal protein L5 NMB0154 [imported] - Neisse... 83 2e-15
pir||C82004 50S ribosomal protein L5 NMA0117 [imported] - Neisse... 83 2e-15
pir||S40200 ribosomal protein L5 - Thermotoga maritima 83 2e-15
sp|P24315|RL5_THETH 50S RIBOSOMAL PROTEIN L5 >gi|94726|pir||S154... 82 3e-15
sp|P41201|RL5_THEFL 50S RIBOSOMAL PROTEIN L5 >gi|243183|gb|AAB21... 82 3e-15
pir||C81267 50S ribosomal protein L5 Cj1695c [imported] - Campyl... 81 1e-14
sp|P16168|RL11_DICDI 60S RIBOSOMAL PROTEIN L11 (L5) (VEGETATIVE ... 80 2e-14
pir||D82916 ribosomal protein L5 UU243 [imported] - Ureaplasma u... 80 2e-14
emb|CAA34548.1| (X16548) ribosomal protein L5 (AA 1-181) [Cyanop... 78 5e-14
gi|11467335 ribosomal protein L5 [Cyanophora paradoxa] >gi|13506... 78 7e-14
sp|Q50306|RL5_MYCPN 50S RIBOSOMAL PROTEIN L5 >gi|2127651|pir||S6... 78 7e-14
gi|11466515 ribosomal protein L5 [Reclinomonas americana] >gi|39... 78 7e-14
pir||T01713 ribosomal protein L5, organellar - Arabidopsis thali... 77 2e-13
sp|Q9ZCR7|RL5_RICPR 50S RIBOSOMAL PROTEIN L5 >gi|7440671|pir||E7... 77 2e-13
sp|O24701|RL5_SYNP6 50S RIBOSOMAL PROTEIN L5 >gi|2446902|dbj|BAA... 76 2e-13
gi|11465768 50S ribosomal protein L5 [Porphyra purpurea] >gi|171... 76 3e-13
sp|Q9XD24|RL5_LEPIN 50S RIBOSOMAL PROTEIN L5 >gi|5163216|gb|AAD4... 76 3e-13
gi|11467729 ribosomal protein L5 [Guillardia theta] >gi|3914663|... 75 5e-13
sp|P95064|RL5_MYCTU 50S RIBOSOMAL PROTEIN L5 >gi|7440662|pir||G7... 75 8e-13
sp|P47409|RL5_MYCGE 50S RIBOSOMAL PROTEIN L5 >gi|1361818|pir||A6... 74 1e-12
sp|Q9ZJS4|RL5_HELPJ 50S RIBOSOMAL PROTEIN L5 >gi|7440680|pir||C7... 74 1e-12
emb|CAB82082.1| (AL161803) 50S ribosomal protein L5 [Streptomyce... 74 1e-12
gb|AAC64970.1| (AF095708) 50S ribosomal protein L5 [Oryza sativa] 74 1e-12
sp|O83231|RL5_TREPA 50S RIBOSOMAL PROTEIN L5 >gi|7440661|pir||C7... 73 2e-12
gb|AAF64313.1|AF250923_1 (AF250923) plastid ribosomal protein PR... 73 2e-12
sp|P33098|RL5_MICLU 50S RIBOSOMAL PROTEIN L5 >gi|322075|pir||S29... 73 2e-12
sp|P56033|RL5_HELPY 50S RIBOSOMAL PROTEIN L5 >gi|7440666|pir||C6... 73 2e-12
gi|11467771 ribosomal protein L5 [Nephroselmis olivacea] >gi|588... 73 2e-12
gi|11467013 50S ribosomal protein L5 [Euglena gracilis] >gi|1329... 72 4e-12
gi|11465434 unknown; 50S ribosomal protein L5 [Cyanidium caldari... 72 4e-12
sp|O32995|RL5_MYCLE 50S RIBOSOMAL PROTEIN L5 >gi|11276702|pir||T... 71 7e-12
sp|P14757|RK5_ASTLO CHLOROPLAST 50S RIBOSOMAL PROTEIN L5 >gi|711... 69 3e-11
gi|7524925 50S ribosomal protein L5 [Chlorella vulgaris] >gi|302... 69 3e-11
gi|11467458 50S ribosomal protein L5 [Odontella sinensis] >gi|13... 68 8e-11
>pir||C75146 lsu ribosomal protein l5p (rpl5p) PAB2130 - Pyrococcus abyssi
(strain Orsay) >gi|5457760|emb|CAB49250.1| (AJ248284)
LSU ribosomal protein L5P (rpl5P) [Pyrococcus abyssi]
Length = 188
Score = 382 bits (971), Expect = e-105
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MAITIPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRK 60
MAITIPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRK
Sbjct: 1 MAITIPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRK 60
Query: 61 AKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEH 120
AKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEH
Sbjct: 61 AKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEH 120
Query: 121 INIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFG 180
INIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFG
Sbjct: 121 INIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFG 180
Query: 181 VEIVEEEG 188
VEIVEEEG
Sbjct: 181 VEIVEEEG 188
>sp|O59431|RL5_PYRHO 50S RIBOSOMAL PROTEIN L5P >gi|7440674|pir||A71186 probable
ribosomal protein L5 - Pyrococcus horikoshii
>gi|3258197|dbj|BAA30880.1| (AP000007) 188aa long
hypothetical 50S ribosomal protein L5 [Pyrococcus
horikoshii]
Length = 188
Score = 367 bits (931), Expect = e-101
Identities = 177/188 (94%), Positives = 186/188 (98%)
Query: 1 MAITIPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRK 60
M ++IPNREEILADWEAHPMR+PRI+KVTINIGVGESGERLTKAEIML+RLTGQKPIRRK
Sbjct: 1 MPVSIPNREEILADWEAHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRK 60
Query: 61 AKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEH 120
AKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVD +LKASSFDEHGNVCFGI+EH
Sbjct: 61 AKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEH 120
Query: 121 INIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFG 180
INIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRA+IPTRHKLTKEEGM+YMMEEFG
Sbjct: 121 INIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEFG 180
Query: 181 VEIVEEEG 188
VEIVEEEG
Sbjct: 181 VEIVEEEG 188
>sp|Q9YF87|RL5_AERPE 50S RIBOSOMAL PROTEIN L5P >gi|7440677|pir||A72727 probable
ribosomal protein L5 APE0354 - Aeropyrum pernix (strain
K1) >gi|5103993|dbj|BAA79309.1| (AP000059) 194aa long
hypothetical 50S ribosomal protein L5 [Aeropyrum pernix]
Length = 194
Score = 220 bits (556), Expect = 6e-57
Identities = 108/176 (61%), Positives = 136/176 (76%), Gaps = 1/176 (0%)
Query: 10 EILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFG 69
EIL +W+ PMR+PRI KVT+NI +G+SGERL +A +LE LTGQKP+ RKAK+T R FG
Sbjct: 19 EILDEWKRSPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFG 78
Query: 70 IRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYD 129
+R+GE IAV VTLRG KA LKR L AV +R+K SS DEHGNV FGI+EHI IPGV+YD
Sbjct: 79 VRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYD 138
Query: 130 PEIGIFGMDVCVTLERPGFR-VARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIV 184
P +GI GMDV +T++RPG R V RR+++R IP RH++T+EE MV + + FGV V
Sbjct: 139 PRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETMVLLNQLFGVTFV 194
>gb|AAK41006.1| LSU ribosomal protein L5AB (rpl5AB) [Sulfolobus solfataricus]
Length = 182
Score = 215 bits (542), Expect = 3e-55
Identities = 99/168 (58%), Positives = 134/168 (78%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMRK ++ KVT+NIG+GESG+RL KA +L+ LTG KP+ +KKT R+FGIR+G+ I
Sbjct: 14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIG 73
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
VKVTLRG +A E L+++L A+ RLK SSFD++GNV FGI EH+ +PG YDPEIGIFGM
Sbjct: 74 VKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGM 133
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
D+ +TLER G+R++RR+RK+AKIP RH++TKEE M ++ F V++VE
Sbjct: 134 DIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLRNNFNVQLVE 181
>sp|Q9UX93|RL5_SULSO 50S RIBOSOMAL PROTEIN L5P >gi|6015772|emb|CAB57599.1| (Y18930)
ribosomal protein L5 (HMAL5) [Sulfolobus solfataricus]
Length = 182
Score = 215 bits (542), Expect = 3e-55
Identities = 99/168 (58%), Positives = 134/168 (78%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMRK ++ KVT+NIG+GESG+RL KA +L+ LTG KP+ +KKT R+FGIR+G+ I
Sbjct: 14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIG 73
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
VKVTLRG +A E L+++L A+ RLK SSFD++GNV FGI EH+ +PG YDPEIGIFGM
Sbjct: 74 VKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGM 133
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
D+ +TLER G+R++RR+RK+AKIP RH++TKEE M ++ F V++VE
Sbjct: 134 DIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLRNNFNVQLVE 181
>sp|P54040|RL5_METJA 50S RIBOSOMAL PROTEIN L5P >gi|2119107|pir||E64358 ribosomal protein
L5 - Methanococcus jannaschii >gi|1591171|gb|AAB98458.1|
(U67497) LSU ribosomal protein L5P (rplE) [Methanococcus
jannaschii]
Length = 190
Score = 215 bits (542), Expect = 3e-55
Identities = 109/180 (60%), Positives = 133/180 (73%), Gaps = 7/180 (3%)
Query: 15 WEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGE 74
W+ +PM KPRIEKV +N GVGESG+RLTK ++E LTGQKPIR +AK+TN FGIR+
Sbjct: 7 WQKNPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKL 66
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDN---RLKASSFDEHGNVCFGIDEHINIPGVEYDPE 131
PI +KVTLRG KA E LK A +L SFD++GN FGI EHI+ PG +YDP
Sbjct: 67 PIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPM 126
Query: 132 IGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEI----VEEE 187
IGIFGMDVCVTLERPGFRV RRKR RAKIP RH+LT+EE + ++ + FGV++ +EEE
Sbjct: 127 IGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEE 186
>sp|O26124|RL5_METTH 50S RIBOSOMAL PROTEIN L5P >gi|7440673|pir||E69080 ribosomal protein
L5 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621044|gb|AAB84517.1| (AE000795) ribosomal
protein L11 (E.coli L5) [Methanobacterium
thermoautotrophicum]
Length = 168
Score = 207 bits (521), Expect = 8e-53
Identities = 96/167 (57%), Positives = 133/167 (79%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PM + RI KVT+NIGVGE GE+L +AE +LE ++GQKP+R +K TN +FGIR+ +PIA
Sbjct: 2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIA 61
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
KVTLRG +A ++LK L + NRLKAS FDE+GNV GIDEHI+IPG++YDPEIGIFGM
Sbjct: 62 CKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGM 121
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIV 184
++ VT E+PG R+ RR+ +R K+P +H++++EE + +M E+F V+IV
Sbjct: 122 NLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQVKIV 168
>sp|P41202|RL5_SULAC 50S RIBOSOMAL PROTEIN L5P >gi|243187|gb|AAB21095.1| (S77838)
ribosomal protein L5 [Sulfolobus acidocaldarius,
Peptide, 178 aa] >gi|2052259|emb|CAA69090.1| (Y07778)
ribosomal protein L5 [Sulfolobus acidocaldarius]
Length = 178
Score = 205 bits (517), Expect = 2e-52
Identities = 99/166 (59%), Positives = 126/166 (75%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
MR+ ++KVT+NIGVGESGERL KA +++ LTG KP+ K +K+ R+FG+R+G PI VK
Sbjct: 12 MRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVK 71
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDV 139
TLR A E LK++L AV+ RLK SSFD +GNV FGI EH+ IPG YDPEIGIFGMDV
Sbjct: 72 ATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDV 131
Query: 140 CVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
+TL RPG+R +RKRK+A IP RH++TKEE + +M E F V I+E
Sbjct: 132 AITLVRPGYRTMKRKRKKASIPRRHRVTKEEAINFMKENFNVTILE 177
>sp|P14029|RL5_METVA 50S RIBOSOMAL PROTEIN L5P >gi|71105|pir||R5MX5 ribosomal protein L5
- Methanococcus vannielii >gi|44761|emb|CAA34693.1|
(X16720) rpL5 (AA 1-181) [Methanococcus vannielii]
Length = 181
Score = 194 bits (488), Expect = 6e-49
Identities = 94/175 (53%), Positives = 123/175 (69%), Gaps = 3/175 (1%)
Query: 15 WEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGE 74
WE PM+KPRI+KVT+N GVGE+G+RLT ++E LTGQ P+R AK+TN FGIR+
Sbjct: 7 WEKEPMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKL 66
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVD---NRLKASSFDEHGNVCFGIDEHINIPGVEYDPE 131
PI +KVTLRG A E L+ A L ASSFD+ GN FG+ EHI+ PG +YDP
Sbjct: 67 PIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPT 126
Query: 132 IGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVEE 186
+GI+GMD+CVT E+PG+RV RK KR+ IP +H + KEE + Y+ ++FG E+V E
Sbjct: 127 VGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKFGAEVVME 181
>gi|11499496 LSU ribosomal protein L5P (rpl5P) [Archaeoglobus fulgidus]
>gi|3914744|sp|O28367|RL5_ARCFU 50S RIBOSOMAL PROTEIN
L5P >gi|7440675|pir||G69488 LSU ribosomal protein L5P
(rpl5P) homolog - Archaeoglobus fulgidus
>gi|2648645|gb|AAB89357.1| (AE000971) LSU ribosomal
protein L5P (rpl5P) [Archaeoglobus fulgidus]
Length = 178
Score = 180 bits (451), Expect = 1e-44
Identities = 96/168 (57%), Positives = 122/168 (72%), Gaps = 3/168 (1%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR+ ++KV INIGVGESGER KA +LE L QKP AK T ++FGIR+GE I
Sbjct: 14 NPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIG 73
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
+KVTLRG KA + LK L +NRL S E G FGI EHI++PGV+YDP++GIFGM
Sbjct: 74 IKVTLRGEKALKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGIFGM 132
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
DVCV+L+R G+RVARR+RK+AKI T H++TKE+ + +E GV IVE
Sbjct: 133 DVCVSLKRRGYRVARRRRKKAKIATSHRVTKED-TIRWLESLGV-IVE 178
>gb|AAG19949.1| (AE005077) 50S ribosomal protein L5P; Rpl5p [Halobacterium sp.
NRC-1]
Length = 175
Score = 172 bits (432), Expect = 2e-42
Identities = 83/168 (49%), Positives = 113/168 (66%), Gaps = 2/168 (1%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
H MR+PRIEKV +++GVG+ G L AE +LE +TGQ+ +R KAK +FG+R+G+PI
Sbjct: 10 HEMREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIG 69
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
KVTLR A + L+R L A D L FD GNV FGI+EH + P EYDP IGI+GM
Sbjct: 70 AKVTLRDDTAVDFLERALPAAD--LDRRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGM 127
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
DV V L RPG+RVA+R + +IP+ H+L E+ + +++ F VE+ E
Sbjct: 128 DVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFDVEVNE 175
>gi|6321522 60S ribosomal protein L11B (L16B) (rp39B) (YL22); Rpl11bp
[Saccharomyces cerevisiae] >gi|71107|pir||R5BY16
ribosomal protein L11.e.B, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|1323123|emb|CAA97087.1|
(Z72870) ORF YGR085c [Saccharomyces cerevisiae]
Length = 174
Score = 170 bits (427), Expect = 8e-42
Identities = 84/169 (49%), Positives = 121/169 (70%), Gaps = 1/169 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR +IEK+ +NI VGESG+RLT+A +LE+L+GQ P++ KA+ T R FGIRR E IA
Sbjct: 7 NPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIA 66
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V VT+RGPKA E+L+R L + +L+ +F GN FGIDEHI++ G++YDP IGIFGM
Sbjct: 67 VHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDL-GIKYDPSIGIFGM 125
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVEE 186
D V + RPG RV RRKR + + HK TKE+ + + +++ +++++
Sbjct: 126 DFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174
>gi|6325359 Ribosomal protein L11A (L16A) (rp39A) (YL22); Rpl11ap
[Saccharomyces cerevisiae]
>gi|132951|sp|P06380|RL11_YEAST 60S RIBOSOMAL PROTEIN
L11 (L16) (YL16) (39A) (RP39) >gi|2119108|pir||S59767
ribosomal protein L11.e.A, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|914973|gb|AAB68072.1|
(U32445) 60S ribosomal protein L16 (Swiss Prot.
accession number P06380) [Saccharomyces cerevisiae]
Length = 174
Score = 170 bits (427), Expect = 8e-42
Identities = 84/169 (49%), Positives = 121/169 (70%), Gaps = 1/169 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR +IEK+ +NI VGESG+RLT+A +LE+L+GQ P++ KA+ T R FGIRR E IA
Sbjct: 7 NPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIA 66
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V VT+RGPKA E+L+R L + +L+ +F GN FGIDEHI++ G++YDP IGIFGM
Sbjct: 67 VHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDL-GIKYDPSIGIFGM 125
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVEE 186
D V + RPG RV RRKR + + HK TKE+ + + +++ +++++
Sbjct: 126 DFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174
>emb|CAA25515.1| (X01029) ribosomal protein L16 [Saccharomyces pastorianus]
Length = 174
Score = 169 bits (424), Expect = 2e-41
Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR +IEK+ +NI VG+SG+RLT+A +LE+L+GQ P++ KA+ T R FGIRR E IA
Sbjct: 7 NPMRDLKIEKLVLNISVGQSGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIA 66
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V VT+RGPKA E+L+R L + +L+ +F GN FGIDEHI++ G++YDP IGIFGM
Sbjct: 67 VHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDL-GIKYDPSIGIFGM 125
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVEE 186
D V + RPG RV RRKR + + HK TKE+ + + +++ +++++
Sbjct: 126 DFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174
>pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 176
Score = 162 bits (406), Expect = 2e-39
Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
H MR+PRIEKV +++G+G G L AE +L +TGQ P+R KAK+T +F IR G+PI
Sbjct: 11 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIG 70
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
KVTLR A E L+ L + L S FD+ GN FG++EH P EYDP IGI+G+
Sbjct: 71 AKVTLRDEMAEEFLQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGL 128
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
DV V L RPG+RVA+R + IPT+H+L + + ++ + VE+ E
Sbjct: 129 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEVSE 176
>sp|P14124|RL5_HALMA 50S RIBOSOMAL PROTEIN L5P (HMAL5) (HL13) >gi|71104|pir||R5HSL5
ribosomal protein L5 [validated] - Haloarcula
marismortui >gi|48861|emb|CAA41284.1| (X58395) ribosomal
protein [Haloarcula marismortui]
>gi|228184|prf||1718307A ribosomal protein L5
[Haloarcula marismortui]
Length = 177
Score = 162 bits (406), Expect = 2e-39
Identities = 78/168 (46%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
H MR+PRIEKV +++G+G G L AE +L +TGQ P+R KAK+T +F IR G+PI
Sbjct: 12 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIG 71
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
KVTLR A E L+ L + L S FD+ GN FG++EH P EYDP IGI+G+
Sbjct: 72 AKVTLRDEMAEEFLQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGL 129
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIVE 185
DV V L RPG+RVA+R + IPT+H+L + + ++ + VE+ E
Sbjct: 130 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEVSE 177
>sp|Q10157|RL11_SCHPO 60S RIBOSOMAL PROTEIN L11 >gi|7490009|pir||T38395 ribosomal protein
L11 - fission yeast (Schizosaccharomyces pombe)
>gi|7490010|pir||T39733 60s ribosomal protein L11 -
fission yeast (Schizosaccharomyces pombe)
>gi|1177354|emb|CAA93230.1| (Z69240) 60s ribosomal
protein L11 [Schizosaccharomyces pombe]
>gi|3299810|dbj|BAA31552.1| (AB016005) ribosomal protein
L11 homolog [Schizosaccharomyces pombe]
>gi|5738531|emb|CAB52808.1| (AL109846) 60s ribosomal
protein L11 [Schizosaccharomyces pombe]
Length = 174
Score = 160 bits (401), Expect = 9e-39
Identities = 80/173 (46%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Query: 12 LADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIR 71
+A+ +PM++ RI K+ +NI +GESG+RLT+A +LE+L+GQ P+ KA+ T R FGIR
Sbjct: 1 MAEKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIR 60
Query: 72 RGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPE 131
R E IA VT+RGPKA E+L+R L + LK +F GN FGI EHI++ G++YDP
Sbjct: 61 RNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDL-GIKYDPS 119
Query: 132 IGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIV 184
IGI+GMD V ++RPG RVARRK +R ++ HK+ E+ + + +++ ++
Sbjct: 120 IGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172
>gb|AAF57560.1| (AE003796) RpL11 gene product [Drosophila melanogaster]
Length = 184
Score = 158 bits (396), Expect = 4e-38
Identities = 82/171 (47%), Positives = 115/171 (66%), Gaps = 1/171 (0%)
Query: 9 EEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDF 68
++I D +PMR I K+ +NI VGESG+RLT+A +LE+LTGQ+P+ KA+ T R F
Sbjct: 6 KKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSF 65
Query: 69 GIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEY 128
GIRR E IAV T+RG KA E+L+R L + L+ +F GN FGI EHI++ G++Y
Sbjct: 66 GIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDL-GIKY 124
Query: 129 DPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
DP IGI+G+D V L RPG+ V RKRK + +H+LTKE+ M + +++
Sbjct: 125 DPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKY 175
>sp|P39026|RL11_HUMAN 60S RIBOSOMAL PROTEIN L11 >gi|71106|pir||R5RT11 ribosomal protein
L11, cytosolic [validated] - rat
>gi|57678|emb|CAA44072.1| (X62146) ribosomal protein L11
[Rattus rattus] >gi|3115334|gb|AAC15856.1| (L05092)
ribosomal protein L11 [Homo sapiens]
Length = 178
Score = 158 bits (395), Expect = 5e-38
Identities = 79/162 (48%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR+ RI K+ +NI VGESG+RLT+A +LE+LTGQ P+ KA+ T R FGIRR E IA
Sbjct: 10 NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V T+RG KA E+L++ L + L+ ++F + GN FGI EHI++ G++YDP IGI+G+
Sbjct: 70 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGL 128
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
D V L RPGF +A +KR+ I +H+++KEE M + +++
Sbjct: 129 DFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKY 170
>emb|CAC12883.1| (AJ295006) ribosomal protein L11-like [Nicotiana tabacum]
Length = 181
Score = 157 bits (393), Expect = 8e-38
Identities = 77/163 (47%), Positives = 116/163 (70%), Gaps = 1/163 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
++PMR+ +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E I
Sbjct: 8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
A VT+RG KA ++L+ L + L +F E G FGI EHI++ G++YDP GI+G
Sbjct: 68 ACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDL-GIKYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
MD V LERPG+RVARR+R ++++ +H++TKE+ M + ++
Sbjct: 127 MDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKY 169
>dbj|BAA92964.1| (AP001551) ESTs D15590(C0900),D48950(S15542),D22684(C0900)
correspond to a region of the predicted gene.; Similar
to Arabidopsis thaliana 60S ribosomal protein L11A
(L16A). (P42795) [Oryza sativa]
Length = 182
Score = 156 bits (391), Expect = 1e-37
Identities = 77/164 (46%), Positives = 116/164 (69%), Gaps = 1/164 (0%)
Query: 16 EAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEP 75
+A+PMR+ +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E
Sbjct: 7 QANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEK 66
Query: 76 IAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIF 135
IA VT+RG KA ++L+ L + L +F E G FGI EHI++ G++YDP GI+
Sbjct: 67 IACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDL-GIKYDPSTGIY 125
Query: 136 GMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
GMD V LER G+RVARR+R ++++ +H++TKE+ M + ++
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKY 169
>gb|AAF13719.1|AF201080_1 (AF201080) ribosomal protein L11 [Schizosaccharomyces pombe]
Length = 166
Score = 156 bits (390), Expect = 2e-37
Identities = 78/165 (47%), Positives = 114/165 (68%), Gaps = 1/165 (0%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
M++ RI K+ +NI +GESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E IA
Sbjct: 1 MKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACH 60
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDV 139
VT+RGPKA E+L+R L + LK +F GN FGI EHI++ G++YDP IGI+GMD
Sbjct: 61 VTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDL-GIKYDPSIGIYGMDF 119
Query: 140 CVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIV 184
V ++RPG RVARRK +R ++ HK+ E+ + + +++ ++
Sbjct: 120 YVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 164
>gi|4506595 ribosomal protein L11 [Homo sapiens] >gi|631361|pir||S45049
ribosomal protein L11, cytosolic - human
>gi|495126|emb|CAA55816.1| (X79234) ribosomal protein
L11 [Homo sapiens]
Length = 178
Score = 155 bits (389), Expect = 2e-37
Identities = 79/162 (48%), Positives = 113/162 (68%), Gaps = 1/162 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR+ RI K+ +NI VGESG RLT+A +LE+LTGQ P+ KA+ T R FGIRR E IA
Sbjct: 10 NPMRELRIRKLCLNICVGESGGRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V +RG KA E+L++ L + L+ ++F + GN FGI EHI++ G+EYDP IGI+G+
Sbjct: 70 VHCAVRGAKAEEILEKGLKVRELELRKNNFSDTGNFGFGIQEHIDL-GIEYDPSIGIYGL 128
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
D V L RPGF +A +KR+ I +H+++KEE M + +++
Sbjct: 129 DFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKY 170
>gi|11423082 ribosomal protein L11 [Homo sapiens]
Length = 167
Score = 155 bits (387), Expect = 4e-37
Identities = 78/160 (48%), Positives = 113/160 (69%), Gaps = 1/160 (0%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
MR+ RI K+ +NI VGESG+RLT+A +LE+LTGQ P+ KA+ T R FGIRR E IAV
Sbjct: 1 MRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVH 60
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDV 139
T+RG KA E+L++ L + L+ ++F + GN FGI EHI++ G++YDP IGI+G+D
Sbjct: 61 CTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGLDF 119
Query: 140 CVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
V L RPGF +A +KR+ I +H+++KEE M + +++
Sbjct: 120 YVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKY 159
>sp|P42795|R111_ARATH 60S RIBOSOMAL PROTEIN L11A (L16A) >gi|624938|emb|CAA57395.1|
(X81799) ribosomal protein L16 [Arabidopsis thaliana]
Length = 182
Score = 155 bits (387), Expect = 4e-37
Identities = 76/163 (46%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
++PMR +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E I
Sbjct: 8 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
A VT+RG KA ++L+ L + L +F + G FGI EHI++ G+ YDP GI+G
Sbjct: 68 ACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIRYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
MD V LERPG+RVARR+R +A++ +H++TK++ M + ++
Sbjct: 127 MDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKY 169
>sp|P50881|RL11_CHLRE 60S RIBOSOMAL PROTEIN L11 >gi|7440679|pir||T08155 ribosomal protein
L11 - Chlamydomonas reinhardtii
>gi|1167826|emb|CAA64625.1| (X95313) 60S ribosomal
protein L11 [Chlamydomonas reinhardtii]
Length = 170
Score = 154 bits (386), Expect = 5e-37
Identities = 78/160 (48%), Positives = 112/160 (69%), Gaps = 1/160 (0%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
MR+ RI K+ +NI V ESG+RL KA +LE+LT Q P+ +A+ T R F IRR E I+
Sbjct: 1 MREIRISKLVLNIAVAESGDRLQKAAKVLEQLTSQVPVYGRARFTVRSFAIRRNEKISCY 60
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDV 139
VT+RG KAY+++KR LA + L +F + GN FGI EHI++ G++YDP GI+GMD
Sbjct: 61 VTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDL-GLKYDPSTGIYGMDF 119
Query: 140 CVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
V LER G+RVARR++++A + +HK+TKE+ + + +EF
Sbjct: 120 YVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEF 159
>sp|P46287|RL11_MEDSA 60S RIBOSOMAL PROTEIN L11 (L5) >gi|541961|pir||S42497 ribosomal
protein L11.e - alfalfa >gi|1076504|pir||S51819
ribosomal protein L11, cytosolic - alfalfa
>gi|463252|emb|CAA55090.1| (X78284) RL5 ribosomal
protein [Medicago sativa]
Length = 181
Score = 154 bits (385), Expect = 7e-37
Identities = 75/163 (46%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
++PMR+ +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E I
Sbjct: 8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
A VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+G
Sbjct: 68 ACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
MD V LERPG+RV RR+R +A++ +H++TK++ M + ++
Sbjct: 127 MDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKY 169
>sp|P42796|R112_ARATH 60S RIBOSOMAL PROTEIN L11B (L16B) >gi|7440684|pir||T04865 ribosomal
protein L11, cytosolic - Arabidopsis thaliana
>gi|550547|emb|CAA57396.1| (X81800) ribosomal protein
L16 [Arabidopsis thaliana] >gi|4539392|emb|CAB37458.1|
(AL035526) ribosomal protein L11, cytosolic [Arabidopsis
thaliana] >gi|7268667|emb|CAB78875.1| (AL161549)
ribosomal protein L11, cytosolic [Arabidopsis thaliana]
Length = 184
Score = 153 bits (384), Expect = 9e-37
Identities = 75/163 (46%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
++PMR +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E I
Sbjct: 10 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKI 69
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
A VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+G
Sbjct: 70 ACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYG 128
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
MD V LERPG+RVARR+R + ++ +H++TK++ M + ++
Sbjct: 129 MDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKY 171
>pir||T49153 ribosomal protein L11-like - Arabidopsis thaliana
>gi|7630065|emb|CAB88287.1| (AL353032) ribosomal protein
L11-like [Arabidopsis thaliana]
>gi|9758681|dbj|BAB09220.1| (AB012245) ribosomal protein
L11-like [Arabidopsis thaliana]
Length = 182
Score = 153 bits (384), Expect = 9e-37
Identities = 75/163 (46%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
++PMR +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E I
Sbjct: 8 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
A VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+G
Sbjct: 68 ACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
MD V LERPG+RVARR+R + ++ +H++TK++ M + ++
Sbjct: 127 MDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKY 169
>sp|P46222|RL11_DROME 60S RIBOSOMAL PROTEIN L11 >gi|2119109|pir||S60245 ribosomal protein
L11.e, cytosolic - fruit fly (Drosophila melanogaster)
>gi|558485|gb|AAC46585.1| (U15643) ribosomal protein
DL11 [Drosophila melanogaster] >gi|1095222|prf||2108277A
ribosomal protein L11 [Drosophila melanogaster]
Length = 184
Score = 153 bits (382), Expect = 2e-36
Identities = 80/171 (46%), Positives = 112/171 (64%), Gaps = 1/171 (0%)
Query: 9 EEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDF 68
++I D P I K+ +NI VGESG+RLT+A +LE+LTGQ+P+ KA+ T R F
Sbjct: 6 KKIKRDPAQEPDEDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSF 65
Query: 69 GIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEY 128
GIRR E IAV T+RG KA E+L+R L + L+ +F GN FGI EHI++ G++Y
Sbjct: 66 GIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDL-GIKY 124
Query: 129 DPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
DP IGI+G+D V L RPG+ V RKRK + +H+LTKE+ M + +++
Sbjct: 125 DPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKY 175
>emb|CAB40967.1| (AJ238271) ribosomal protein L11 [Oryzias latipes]
Length = 177
Score = 153 bits (382), Expect = 2e-36
Identities = 77/162 (47%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PM++ RI K+ +NI VGESG+RLT+A +LE+LTGQ P+ KA+ T R FGIRR E IA
Sbjct: 9 NPMKELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V T+RG KA E+L++ L + L+ ++F + GN FGI EHI++ G++YDP IGI+G+
Sbjct: 69 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGL 127
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
D V L R GF +A +KR++++I R ++ +EEGM + +++
Sbjct: 128 DFYVVLGRTGFSIADKKRQKSRIGFRLRIRQEEGMRWFQQKY 169
>sp|P42794|RL11_ARATH 60S RIBOSOMAL PROTEIN L11 (L16) >gi|629552|pir||S49033 ribosomal
protein L11, cytosolic - Arabidopsis thaliana
>gi|550544|emb|CAA57394.1| (X81798) ribosomal protein
L16 [Arabidopsis thaliana]
Length = 182
Score = 152 bits (380), Expect = 3e-36
Identities = 74/163 (45%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
++PMR +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E I
Sbjct: 8 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
A VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+G
Sbjct: 68 ACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
M+ V LERPG+RVARR+R + ++ +H++TK++ M + ++
Sbjct: 127 MEFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKY 169
>pir||T29860 hypothetical protein F07D10.1 - Caenorhabditis elegans
>gi|1125808|gb|AAA83599.1| (U42845) coded for by C.
elegans cDNA yk63a8.5; coded for by C. elegans cDNA
yk83a12.5; coded for by C. elegans cDNA yk74b10.5; coded
for by C. elegans cDNA yk64a6.5; coded for by C. elegans
cDNA yk108g8.5; coded for by C. elegans cDNA yk90b10.5;
coded>
Length = 196
Score = 151 bits (377), Expect = 6e-36
Identities = 77/175 (44%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 5 IPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKT 64
I + EI + MR+ +I+K+ +NI VGESG+RLT+A +LE+LTGQ P+ KA+ T
Sbjct: 4 IEKQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYT 63
Query: 65 NRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIP 124
R FGIRR E IAV T+RGPKA E+L++ L + L +F + GN FG+ EHI++
Sbjct: 64 VRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDL- 122
Query: 125 GVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
G++YDP IGI+GMD V L+R G R+A+R+R ++ H++ +EE + + +++
Sbjct: 123 GIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKY 177
>sp|Q94300|RL11_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L11 >gi|7508232|pir||T30978
hypothetical protein T22F3.4 - Caenorhabditis elegans
>gi|1658341|gb|AAB18306.1| (U64844) Contains similarity
to Pfam domain: PF00673 (L5_C), Score=194.1,
E-value=7.3e-55, N=1 [Caenorhabditis elegans]
Length = 196
Score = 148 bits (371), Expect = 3e-35
Identities = 76/160 (47%), Positives = 111/160 (68%), Gaps = 1/160 (0%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
MR+ +I+K+ +NI VGESG+RLT+A +LE+LTGQ P+ KA+ T R FGIRR E IAV
Sbjct: 19 MRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVH 78
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDV 139
T+RGPKA E+L++ L + L +F + GN FG+ EHI++ G++YDP IGI+GMD
Sbjct: 79 CTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDL-GIKYDPGIGIYGMDF 137
Query: 140 CVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
V L R G RV++R+R +I H++ KEE + + +++
Sbjct: 138 YVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKY 177
>sp|P42922|RL11_LEICH 60S RIBOSOMAL PROTEIN L11 >gi|559581|gb|AAC46921.1| (U16018)
ribosomal protein L-11 [Leishmania chagasi]
Length = 188
Score = 148 bits (369), Expect = 5e-35
Identities = 79/156 (50%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
A+PMR+ ++K+ INI VGESG+RLT+A +LE+L Q P+ +A+ T R FGIRR E I
Sbjct: 8 ANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
AV T+RG KA E+L++ L + LK+ +F + G+ FGIDEHI++ G++YDP GI+G
Sbjct: 68 AVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDL-GIKYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGM 172
MD V L R G RVA RKRK +++ H +TKEE M
Sbjct: 127 MDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAM 162
>sp|Q56231|RL5_THEAC 50S RIBOSOMAL PROTEIN L5P >gi|7484228|pir||T37468 ribosomal protein
L5 - Thermoplasma acidophilum >gi|1373336|gb|AAB02245.1|
(U57643) ribosomal protein L5 [Thermoplasma acidophilum]
>gi|10640604|emb|CAC12382.1| (AL445067) 50S RIBOSOMAL
PROTEIN L5 [Thermoplasma acidophilum]
Length = 170
Score = 148 bits (369), Expect = 5e-35
Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 1/168 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PM + I+KV +NIGVG++G+RLTKA +LE LTG K AKK+ RDF IR+ PI
Sbjct: 2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIG 61
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
VKVTLR A E L++ D ++ SFD+HGN FGI ++ + G++YDP+IGIFGM
Sbjct: 62 VKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGM 121
Query: 138 DVCVTL-ERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGVEIV 184
DV + R G+R+ RR+ IP ++ KEE ++ + F V +V
Sbjct: 122 DVAIVFRRRGGYRIERRRIGSKTIPNSIRVRKEEAQDFLQKNFKVTVV 169
>sp|P24119|RL11_TETTH 60S RIBOSOMAL PROTEIN L11 (L21) >gi|84358|pir||JU0456 ribosomal
protein L11.e - Tetrahymena thermophila
>gi|1333641|gb|AAB00917.1| (M37892) ribosomal protein
L21 [Tetrahymena thermophila]
Length = 172
Score = 147 bits (368), Expect = 7e-35
Identities = 77/168 (45%), Positives = 112/168 (65%), Gaps = 1/168 (0%)
Query: 12 LADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIR 71
+ D + + MR+ +I K+ IN VGESG++LTKA +L+ L+GQ+P+ +A+ T R FGI+
Sbjct: 1 MTDKKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIK 60
Query: 72 RGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPE 131
R E +AV VT+RG KA ++L R L + L+ +F GN FGI EHI++ G++YDP
Sbjct: 61 RNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDL-GMKYDPS 119
Query: 132 IGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
GIFGMD V LERPG RVARR+R +++ ++KEE + + EF
Sbjct: 120 TGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFKTEF 167
>sp|P48157|RL11_LEIMA 60S RIBOSOMAL PROTEIN L11 >gi|577833|gb|AAC46922.1| (U16999)
ribosomal protein [Leishmania major]
>gi|6165399|emb|CAB59873.1| (AL132764) 60S ribosomal
protein L11 [Leishmania major]
Length = 188
Score = 147 bits (367), Expect = 9e-35
Identities = 79/156 (50%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
A+PMR+ ++K+ INI VGESG+RLT+A +LE+L Q P+ +A+ T R FGIRR E I
Sbjct: 8 ANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKI 67
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFG 136
AV T+RG KA E+L++ L + LK+ +F + G+ FGIDEHI++ G++YDP GI+G
Sbjct: 68 AVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDL-GIKYDPSTGIYG 126
Query: 137 MDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGM 172
MD V L R G RVA RKRK +++ H +TKEE M
Sbjct: 127 MDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAM 162
>sp|O22540|RL11_ORYSA 60S RIBOSOMAL PROTEIN L11 >gi|7440682|pir||T02091 ribosomal protein
L11 - rice >gi|2570507|gb|AAB82139.1| (AF022736)
ribosomal protein [Oryza sativa]
Length = 182
Score = 146 bits (366), Expect = 1e-34
Identities = 74/164 (45%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 16 EAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEP 75
+++PMR +++K+ +NI VGESG+RLT+A +LE+L GQ P+ KA+ T R FGIRR E
Sbjct: 7 QSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLIGQSPVFSKARYTVRSFGIRRNEK 66
Query: 76 IAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIF 135
IA VT+RG KA ++L+ L + L S E G FGI EHI++ G++ DP G +
Sbjct: 67 IACYVTVRGEKAMQLLESGLKVKECELLRRSCSETGCFGFGIQEHIDL-GIQCDPSTGFY 125
Query: 136 GMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
GMD V LER G+RVARR+R ++++ +H++TKE+ M + ++
Sbjct: 126 GMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKY 169
>sp|Q29205|RL11_PIG 60S RIBOSOMAL PROTEIN L11
Length = 166
Score = 146 bits (366), Expect = 1e-34
Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PMR+ RI K+ +NI VGESG+RLT+ +LE+LTGQ P+ KA+ T R FGIRR E IA
Sbjct: 10 NPMRELRIRKLCLNICVGESGDRLTRXAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V T+RG KA E+L++ L + L+ ++F + GN FGI EHI++ G++YDP IGI+G+
Sbjct: 70 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGL 128
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKE 169
V L RPGF +A +KR+ I +H+ +KE
Sbjct: 129 XFYVVLGRPGFSIAGKKRRXGFIGAKHRXSKE 160
>gb|AAD21733.1| (AC006931) 60S ribosomal protein L11B [Arabidopsis thaliana]
Length = 182
Score = 146 bits (364), Expect = 2e-34
Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 11/170 (6%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAE----------IMLERLTGQKPIRRKAKKTNRDFG 69
MR +++K+ +NI VGESG+RLT+A ++LE+L+GQ P+ KA+ T R FG
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVPPVFYPFSVVLEQLSGQTPVFSKARYTVRSFG 60
Query: 70 IRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYD 129
IRR E IA VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YD
Sbjct: 61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYD 119
Query: 130 PEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
P GI+GMD V LERPG+RVARR+R +A++ +H++TK++ M + ++
Sbjct: 120 PSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKY 169
>dbj|BAA12249.1| (D84173) ribosomal protein L11 [Paramecium caudatum]
Length = 166
Score = 144 bits (359), Expect = 8e-34
Identities = 80/163 (49%), Positives = 107/163 (65%), Gaps = 3/163 (1%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
MRK RIEK+ ++I GESG++LTKA +LE LTGQKP+ KA+ T R FGIRR E I+V
Sbjct: 1 MRKIRIEKLMVHICAGESGDKLTKAAKVLEDLTGQKPVFGKARYTVRSFGIRRNEKISVY 60
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDV 139
T+RG +A ++L R L + LK +F + GN GI EHI++ G++YDP GIFGMD
Sbjct: 61 CTIRGDQARDILVRGLRVKEMELKKRNFSDSGNFGLGIQEHIDL-GLKYDPYTGIFGMDF 119
Query: 140 CVTLERPGFRVARRKRKRAKIPTRHKL--TKEEGMVYMMEEFG 180
V L RPG RVA RK + +++ T+ K KE G + + FG
Sbjct: 120 YVALSRPGLRVAERKSRNSRLGTKPKSHPKKEAGWIGPTQTFG 162
>gb|AAG13293.1|AF266173_1 (AF266173) 60S ribosomal protein L11 [Gillichthys mirabilis]
Length = 177
Score = 139 bits (346), Expect = 3e-32
Identities = 75/164 (45%), Positives = 106/164 (63%), Gaps = 1/164 (0%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIA 77
+PM++ RI K+ +NI VGESG+RLT+A +LE+LTGQ P+ KA+ T R FGIRR E IA
Sbjct: 10 NPMKELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIA 69
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGM 137
V T+RG KA E+L++ L + L+ ++F + GN FGI EHI++ G++YDP IGI+G+
Sbjct: 70 VHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGL 128
Query: 138 DVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEFGV 181
D V L RPGF +A + A T K+ + E G+
Sbjct: 129 DFYVVLGRPGFSIADKNGNEAASATGTASAKKNLCLVPAEIHGI 172
>sp|Q94793|RL11_TOXCA 60S RIBOSOMAL PROTEIN L11 >gi|1498473|gb|AAB07369.1| (U63521) 60S
ribosomal protein [Toxocara canis]
Length = 125
Score = 99.8 bits (245), Expect = 2e-20
Identities = 53/119 (44%), Positives = 77/119 (64%)
Query: 5 IPNREEILADWEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKT 64
+ + EI + MR+ +I+K+ +NI VGE G+RLT+A +LE+LTGQ P+ KA+ T
Sbjct: 4 VEKQTEIREKKARNVMRELKIQKLCLNICVGEFGDRLTRAAKVLEQLTGQTPVFSKARYT 63
Query: 65 NRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINI 123
R FGIRR E IAV T+RGPKA E+L++ L + L +F + GN G+ EHI++
Sbjct: 64 VRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGLGVQEHIDL 122
>pir||A83115 50S ribosomal protein L5 PA4251 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950468|gb|AAG07639.1|AE004841_17
(AE004841) 50S ribosomal protein L5 [Pseudomonas
aeruginosa]
Length = 179
Score = 96.3 bits (236), Expect = 2e-19
Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 9/157 (5%)
Query: 17 AHPMRKPRIEKVTINIGVGES-GER--LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRG 73
A+ M PR+ K+T+N+G+GE+ G++ + A LE++TGQKP+ A+K+ F IR G
Sbjct: 23 ANVMEVPRVTKITLNMGLGEAVGDKKIIENAVADLEKITGQKPVVTYARKSIAGFKIREG 82
Query: 74 EPIAVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVE 127
PI VKVTLR + YE L RLL+ R L A SFD GN G+ E I P ++
Sbjct: 83 WPIGVKVTLRSDRMYEFLDRLLSISLPRVRDFRGLNAKSFDGRGNYSMGVKEQIIFPEID 142
Query: 128 YDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRH 164
YD + G+D+ +T R + K P R+
Sbjct: 143 YDKIDALRGLDITLTTTARTDDEGRALLRAFKFPFRN 179
>sp|P46178|RL5_BUCAK 50S RIBOSOMAL PROTEIN L5 >gi|632227|pir||JC2278 ribosomal protein
L5 - pea aphid symbiont bacterium
>gi|710617|dbj|BAA06587.1| (D31786) ribosomal protein L5
[Acyrthosiphon kondoi endosymbiont]
Length = 179
Score = 95.6 bits (234), Expect = 4e-19
Identities = 53/132 (40%), Positives = 78/132 (58%), Gaps = 9/132 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ PR+EK+T+N+GVGE+ + L A L ++GQKP+ KA+K+ F IR+G PI
Sbjct: 26 MQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + +E +RL++ R L A SFD GN G+ E I P ++YD
Sbjct: 86 GCKVTLRGERMWEFFERLISIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDK 145
Query: 131 EIGIFGMDVCVT 142
+ G+D+ +T
Sbjct: 146 VDRVRGLDITIT 157
>sp|P02389|RL5_ECOLI 50S RIBOSOMAL PROTEIN L5 >gi|7428671|pir||R5EC5 ribosomal protein
L5 [validated] - Escherichia coli
>gi|42981|emb|CAA25717.1| (X01563) L5 (rp1E) (aa 1-179)
[Escherichia coli] >gi|606242|gb|AAA58105.1| (U18997)
50S ribosomal subunit protein L5 [Escherichia coli]
>gi|1789704|gb|AAC76333.1| (AE000408) 50S ribosomal
subunit protein L5 [Escherichia coli K12]
Length = 179
Score = 95.2 bits (233), Expect = 5e-19
Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ PR+EK+T+N+GVGE+ + L A L ++GQKP+ KA+K+ F IR+G PI
Sbjct: 26 MQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + +E +RL+ R L A SFD GN G+ E I P ++YD
Sbjct: 86 GCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDK 145
Query: 131 EIGIFGMDVCVT 142
+ G+D+ +T
Sbjct: 146 VDRVRGLDITIT 157
>sp|P44346|RL5_HAEIN 50S RIBOSOMAL PROTEIN L5 >gi|1075256|pir||H64093 ribosomal protein
L5 - Haemophilus influenzae (strain Rd KW20)
>gi|1573800|gb|AAC22448.1| (U32762) ribosomal protein L5
(rpL5) [Haemophilus influenzae Rd]
Length = 179
Score = 95.2 bits (233), Expect = 5e-19
Identities = 54/132 (40%), Positives = 77/132 (57%), Gaps = 9/132 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ PRIEK+T+N+GVGE+ + L A L ++GQKP+ KA+K+ F IR+G PI
Sbjct: 26 MQVPRIEKITLNMGVGEALTDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + +E +RL+ R L A SFD GN G+ E I P ++YD
Sbjct: 86 GCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDK 145
Query: 131 EIGIFGMDVCVT 142
+ G+D+ +T
Sbjct: 146 VDRVRGLDITIT 157
>sp|O67568|RL5_AQUAE 50S RIBOSOMAL PROTEIN L5 >gi|7440663|pir||G70442 ribosomal protein
L5 - Aquifex aeolicus >gi|2983983|gb|AAC07529.1|
(AE000749) ribosomal protein L05 [Aquifex aeolicus]
Length = 188
Score = 92.8 bits (227), Expect = 2e-18
Identities = 50/132 (37%), Positives = 79/132 (58%), Gaps = 9/132 (6%)
Query: 19 PMRKPRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGEP 75
PM+ PR++K+ +N+GVGE+ + + + E +E L TGQ+P+ +A+K+ F +R+G P
Sbjct: 33 PMQIPRLQKIVVNMGVGEAVQDIRQLERAVEDLRAITGQQPVITRARKSEAGFKLRKGMP 92
Query: 76 IAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYD 129
I KVTLR + ++ L +L++ R+K SFD GN FGI E I P ++YD
Sbjct: 93 IGCKVTLRKERMWDFLDKLISVALPRVKDFKGLSPRSFDGRGNYAFGIAEQIVFPEIDYD 152
Query: 130 PEIGIFGMDVCV 141
I GMD+ +
Sbjct: 153 KVDRIRGMDIII 164
>sp|Q9Z9K2|RL5_BACHD 50S RIBOSOMAL PROTEIN L5 >gi|11276701|pir||T44395 ribosomal protein
L5 [imported] - Bacillus halodurans
>gi|4512416|dbj|BAA75283.1| (AB017508) rplE homologue
(identity of 86% to B. subtilis ) [Bacillus halodurans]
>gi|10172758|dbj|BAB03865.1| (AP001507) ribosomal
protein L5 (BL6) [Bacillus halodurans]
Length = 179
Score = 92.4 bits (226), Expect = 3e-18
Identities = 51/131 (38%), Positives = 75/131 (56%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M P++EK+ +N+GVG++ + L KA L +TGQKPI KAKK+ F +R G PI
Sbjct: 26 MAVPKLEKIVVNMGVGDAVQNAKALDKAVEELTEITGQKPIITKAKKSIAGFKLREGMPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + YE L +L++ R++ +FD GN G+ E + P ++YD
Sbjct: 86 GAKVTLRGERMYEFLDKLISVSLPRVRDFRGISKKAFDGRGNYTLGVKEQLIFPEIDYDK 145
Query: 131 EIGIFGMDVCV 141
+ GMDV +
Sbjct: 146 VDKVRGMDVVI 156
>pir||B82058 ribosomal protein L5 VC2584 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657171|gb|AAF95725.1| (AE004326)
ribosomal protein L5 [Vibrio cholerae]
Length = 179
Score = 91.7 bits (224), Expect = 5e-18
Identities = 51/132 (38%), Positives = 78/132 (58%), Gaps = 9/132 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ PRIEK+T+N+GVGE+ + L A + ++GQKP+ KA+K+ F IR G PI
Sbjct: 26 MQVPRIEKITLNMGVGEAINDKKLLENAASDMAIISGQKPLITKARKSVAGFKIREGYPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + ++ L+RL++ R++ SFD GN G+ E I P ++YD
Sbjct: 86 GCKVTLRGERMWDFLERLISIALPRVRDFRGVNGKSFDGRGNYSMGVREQIIFPEIDYDK 145
Query: 131 EIGIFGMDVCVT 142
+ G+D+ +T
Sbjct: 146 VDRVRGLDITIT 157
>sp|P12877|RL5_BACSU 50S RIBOSOMAL PROTEIN L5 (BL6) >gi|71099|pir||R5BS5 ribosomal
protein L5 - Bacillus subtilis >gi|40152|emb|CAA33703.1|
(X15664) L5 protein (AA 1-179) [Bacillus subtilis]
>gi|1044976|gb|AAB06811.1| (L47971) ribosomal protein L5
[Bacillus subtilis] >gi|2632395|emb|CAB11904.1| (Z99104)
ribosomal protein L5 (BL6) [Bacillus subtilis]
Length = 179
Score = 91.3 bits (223), Expect = 7e-18
Identities = 49/131 (37%), Positives = 75/131 (56%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P+IEK+ IN+GVG++ + + +E LT GQKP+ +AKK+ F +R G PI
Sbjct: 26 MQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + Y+ L +L++ R++ SFD GN GI E + P ++YD
Sbjct: 86 GAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDK 145
Query: 131 EIGIFGMDVCV 141
+ GMD+ +
Sbjct: 146 VTKVRGMDIVI 156
>sp|P10136|RL5_MYCCA 50S RIBOSOMAL PROTEIN L5 >gi|71101|pir||R5YM5C ribosomal protein L5
- Mycoplasma capricolum >gi|44221|emb|CAA29716.1|
(X06414) ribosomal protein L5 (AA 1-180) [Mycoplasma
capricolum]
Length = 180
Score = 91.3 bits (223), Expect = 7e-18
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESG---ERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P+I+K+ IN+G+G++ ++L A LE+L+GQKPI KAKK+ F +R G I
Sbjct: 27 MQVPKIQKIVINMGIGDATTDPKKLDAAIFELEKLSGQKPIVTKAKKSLAVFKLREGMAI 86
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG K Y+ L +L+ R++ +SFD GN GI E I P V++D
Sbjct: 87 GAKVTLRGKKMYDFLDKLINVALPRVRDFRGVSKTSFDGFGNFYTGIKEQIIFPEVDHDK 146
Query: 131 EIGIFGMDVCV 141
I + GMD+ +
Sbjct: 147 VIRLRGMDITI 157
>gb|AAD08795.1| (AF040101) ribosomal protein L5 [Aquifex pyrophilus]
Length = 203
Score = 89.3 bits (218), Expect = 3e-17
Identities = 49/133 (36%), Positives = 78/133 (57%), Gaps = 9/133 (6%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGE 74
+PM+ PR+ K+ +N+GVGE+ + + + E +E L TGQ+P+ +A+K+ F +R+G
Sbjct: 32 NPMQVPRLVKIVVNMGVGEAVQDIKQLERAVEDLRAITGQQPMITRARKSKAGFKLRKGM 91
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEY 128
PI KVTLR ++ L ++++ R+K SFD GN FGI E I P ++Y
Sbjct: 92 PIGCKVTLRNHTMWDFLDKVISVALPRVKDFKGLNPRSFDGRGNYAFGIAEQIVFPEIDY 151
Query: 129 DPEIGIFGMDVCV 141
D I GMD+ +
Sbjct: 152 DKVDRIRGMDIII 164
>sp|Q9ZI40|RL5_AQUPY 50S RIBOSOMAL PROTEIN L5
Length = 188
Score = 89.3 bits (218), Expect = 3e-17
Identities = 49/133 (36%), Positives = 78/133 (57%), Gaps = 9/133 (6%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGE 74
+PM+ PR+ K+ +N+GVGE+ + + + E +E L TGQ+P+ +A+K+ F +R+G
Sbjct: 32 NPMQVPRLVKIVVNMGVGEAVQDIKQLERAVEDLRAITGQQPMITRARKSKAGFKLRKGM 91
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEY 128
PI KVTLR ++ L ++++ R+K SFD GN FGI E I P ++Y
Sbjct: 92 PIGCKVTLRNHTMWDFLDKVISVALPRVKDFKGLNPRSFDGRGNYAFGIAEQIVFPEIDY 151
Query: 129 DPEIGIFGMDVCV 141
D I GMD+ +
Sbjct: 152 DKVDRIRGMDIII 164
>sp|P08895|RL5_BACST 50S RIBOSOMAL PROTEIN L5 >gi|71100|pir||R5BS5F ribosomal protein L5
- Bacillus stearothermophilus
Length = 179
Score = 88.9 bits (217), Expect = 4e-17
Identities = 48/131 (36%), Positives = 76/131 (57%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P+IEK+ IN+GVG++ + + +E LT GQ+P+ +AKK+ F +R+G PI
Sbjct: 26 MQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + YE L +L++ R++ +FD GN GI E + P ++YD
Sbjct: 86 GAKVTLRGERMYEFLDKLISVSLPRVRDFRGVSKKAFDGRGNYTLGIKEQLIFPEIDYDK 145
Query: 131 EIGIFGMDVCV 141
+ GMD+ +
Sbjct: 146 VNKVRGMDIVI 156
>sp|P57579|RL5_BUCAI 50S RIBOSOMAL PROTEIN L5 >gi|10039171|dbj|BAB13205.1| (AP001119)
50S ribosomal protein L5 [Buchnera sp. APS]
Length = 179
Score = 88.9 bits (217), Expect = 4e-17
Identities = 55/153 (35%), Positives = 79/153 (50%), Gaps = 9/153 (5%)
Query: 20 MRKPRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P+I+K+T+N+GVG + L A + L ++GQKP+ KA+K+ F IR+G PI
Sbjct: 26 MQVPKIDKITLNMGVGGAASDKKILDNAILDLTAISGQKPLITKARKSVAGFKIRQGYPI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG K + +RL+ R L + SFD GN GI E I P ++YD
Sbjct: 86 GCKVTLRGQKKWHFFERLIIIAVPRIRDFRGLSSHSFDGQGNYSLGIREQIIFPEIDYDK 145
Query: 131 EIGIFGMDVCVTLERPGFRVARRKRKRAKIPTR 163
+ G+D+ +T AR P R
Sbjct: 146 IDRVRGLDITITTTAKSNHEARLLLSAFNFPFR 178
>sp|O51443|RL5_BORBU 50S RIBOSOMAL PROTEIN L5 >gi|7440667|pir||A70161 ribosomal protein
L5 (rplE) - Lyme disease spirochete
>gi|2688401|gb|AAC66852.1| (AE001152) ribosomal protein
L5 (rplE) [Borrelia burgdorferi]
Length = 182
Score = 87.0 bits (212), Expect = 1e-16
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P++EK+ I++GVGE+ L A + L ++TGQK ++ KAKK F IR+G+ I
Sbjct: 29 MQVPKLEKIVISVGVGEAVRNKKLLDSAVLELAQITGQKAVKTKAKKAIAGFKIRQGQEI 88
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG YE L +L+ R+K +FD +GN FGI E I ++YD
Sbjct: 89 GAKVTLRGNAMYEFLYKLIHLALPRVKDFRGINGDAFDGNGNYSFGITEQIIFSEIDYDK 148
Query: 131 EIGIFGMDVCV 141
I G+++ +
Sbjct: 149 IERISGLNITI 159
>gi|11466362 ribosomal protein L5 [Mesostigma viride]
>gi|7259505|gb|AAF43806.1|AF166114_18 (AF166114)
ribosomal protein L5 [Mesostigma viride]
Length = 184
Score = 86.2 bits (210), Expect = 2e-16
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGE 74
+P + PRI+K+ IN G+ E+ + E ++ L+ GQK + +AKK F IR G
Sbjct: 25 NPHQIPRIKKIVINCGLSEASQNSKSLESAMKELSIIAGQKGVITRAKKAIAGFKIREGL 84
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEY 128
PI + +TLRG Y L RL+ R++ + SFD HGN G+ E + P ++Y
Sbjct: 85 PIGICITLRGDSMYAFLDRLINLALPRIRDFQGVSSKSFDGHGNYNLGLKEQLMFPEIDY 144
Query: 129 DPEIGIFGMDVCV 141
D I GMD+C+
Sbjct: 145 DQIDKIRGMDICI 157
>sp|O52344|RL5_MYCGA 50S RIBOSOMAL PROTEIN L5 >gi|2766515|gb|AAB95399.1| (AF036708)
ribosomal protein L5 [Mycoplasma gallisepticum]
Length = 185
Score = 85.8 bits (209), Expect = 3e-16
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P+IEK+ IN+GVG++ + L A+ L+ ++GQKP+ KA +N F IR+G+ I
Sbjct: 25 MQVPKIEKIVINMGVGDATKDAKLLELAQAELQAISGQKPVITKAHSSNASFKIRQGQAI 84
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG K + L++L+ R L +FD GN GI E I P + YD
Sbjct: 85 GCKVTLRGEKMWNFLEKLINIALPRVRDFRGLSNRAFDARGNYTLGIKEQIIFPEIIYDN 144
Query: 131 EIGIFGMDVCVTL 143
I G DV + +
Sbjct: 145 VKKIRGFDVTLVI 157
>sp|P38517|RL5_THEMA 50S RIBOSOMAL PROTEIN L5 >gi|7440672|pir||H72248 ribosomal protein
L5 - Thermotoga maritima (strain MSB8)
>gi|4982052|gb|AAD36554.1|AE001798_19 (AE001798)
ribosomal protein L5 [Thermotoga maritima]
Length = 184
Score = 84.7 bits (206), Expect = 7e-16
Identities = 53/140 (37%), Positives = 76/140 (53%), Gaps = 9/140 (6%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIM---LERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ K+ IN+G+GE E L ++TGQKPI +A+K+ +F IR+G PI +K
Sbjct: 33 PKLVKIVINMGIGEGSRNYDLIERHANELAKITGQKPIVTRARKSISNFKIRKGMPIGLK 92
Query: 80 VTLRGPKAYEMLKRLLAAV-----DNR-LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + Y L +L+ V D R L +SFD GN FG+ E + P + D
Sbjct: 93 VTLRGARMYNFLYKLINIVLPKVRDFRGLDPNSFDGRGNYSFGLSEQLVFPELNPDEVRR 152
Query: 134 IFGMDVCVTLERPGFRVARR 153
I GMD+ + + ARR
Sbjct: 153 IQGMDITIVTTAKTDQEARR 172
>pir||D82718 50S ribosomal protein L5 XF1164 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106128|gb|AAF83974.1|AE003950_24
(AE003950) 50S ribosomal protein L5 [Xylella fastidiosa]
Length = 179
Score = 84.7 bits (206), Expect = 7e-16
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 17 AHPMRKPRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRG 73
++PM PR+ K+T+N+GVGE+ L A + +++GQ+PI K++ + F IR G
Sbjct: 23 SNPMAVPRLVKITLNMGVGEAATNKKVLENAVADMAKISGQRPIVTKSRISVASFKIRNG 82
Query: 74 EPIAVKVTLRGPKAYEMLKRLL-----AAVDNR-LKASSFDEHGNVCFGIDEHINIPGVE 127
PI K TLR K YE L RL+ D R + SFD GN G+ E + P ++
Sbjct: 83 WPIGCKTTLRRSKMYEFLDRLINISLPCVRDFRGIPPRSFDGRGNFNMGVKEQVVFPEID 142
Query: 128 YDPEIGIFGMDVCVT 142
+D I GMD+ +T
Sbjct: 143 FDAVDAIRGMDIAIT 157
>emb|CAA79789.1| (Z21677) ribosomal protein L5 [Thermotoga maritima]
Length = 184
Score = 83.9 bits (204), Expect = 1e-15
Identities = 50/128 (39%), Positives = 73/128 (56%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIM---LERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ K+ IN+G+GE E L ++TGQKPI +A+K+ +F IR+G PI +K
Sbjct: 33 PKLVKIVINMGIGEGSRNYDLIERHANELAKITGQKPIVTRARKSISNFKIRKGMPIGLK 92
Query: 80 VTLRGPKAYEMLKRLLAAV-----DNR-LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + Y L +L+ V D R L +SFD GN FG+ E + P ++ D
Sbjct: 93 VTLRGARMYSFLYKLINIVLPKVRDFRGLDPNSFDGRGNYSFGLSEQLVFPELDPDEVRR 152
Query: 134 IFGMDVCV 141
I GMD+ +
Sbjct: 153 IQGMDITI 160
>pir||S77490 ribosomal protein L5 - Synechocystis sp. (strain PCC 6803)
>gi|1652415|dbj|BAA17337.1| (D90905) 50S ribosomal
protein L5 [Synechocystis sp.]
Length = 200
Score = 83.5 bits (203), Expect = 2e-15
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ KVT+N G+GE+ + E L L TGQKP+ +A+K F IR G P+ V
Sbjct: 50 PKLTKVTVNRGLGEASQNAKALESSLTELATITGQKPVVTRARKAIAGFKIREGMPVGVM 109
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLR + Y L RL+ R++ +SFD GN GI E + P ++YD
Sbjct: 110 VTLRSERMYAFLDRLINLALPRIRDFRGISPNSFDGRGNYSLGIREQLIFPEIDYDTIDQ 169
Query: 134 IFGMDVCVTLERPGFRVARRKRKRAKIPTR 163
I GMDV + R K +P R
Sbjct: 170 IRGMDVSIITSAQTDEEGRALLKALGMPFR 199
>sp|P73308|RL5_SYNY3 50S RIBOSOMAL PROTEIN L5
Length = 180
Score = 83.5 bits (203), Expect = 2e-15
Identities = 53/150 (35%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ KVT+N G+GE+ + E L L TGQKP+ +A+K F IR G P+ V
Sbjct: 30 PKLTKVTVNRGLGEASQNAKALESSLTELATITGQKPVVTRARKAIAGFKIREGMPVGVM 89
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLR + Y L RL+ R++ +SFD GN GI E + P ++YD
Sbjct: 90 VTLRSERMYAFLDRLINLALPRIRDFRGISPNSFDGRGNYSLGIREQLIFPEIDYDTIDQ 149
Query: 134 IFGMDVCVTLERPGFRVARRKRKRAKIPTR 163
I GMDV + R K +P R
Sbjct: 150 IRGMDVSIITSAQTDEEGRALLKALGMPFR 179
>pir||C75535 ribosomal protein L5 - Deinococcus radiodurans (strain R1)
>gi|6457997|gb|AAF09904.1|AE001892_15 (AE001892)
ribosomal protein L5 [Deinococcus radiodurans]
Length = 180
Score = 83.5 bits (203), Expect = 2e-15
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 20 MRKPRIEKVTINIGVGESGE---RLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M PRIEK+ +N G+G S E + KA L +T QKPI KAKK+ +F +R+G P+
Sbjct: 26 MAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPV 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
+KVTLRG + Y L++L+ R++ ++FD GN GI E + P + YD
Sbjct: 86 GIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDM 145
Query: 131 EIGIFGMDVCVTLERPGFRVARRKRKRAKIPTR 163
GMD+ + AR + +P R
Sbjct: 146 VDKTRGMDITIVTTAKTDEEARALLQSMGLPFR 178
>pir||D81232 50S ribosomal protein L5 NMB0154 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225372|gb|AAF40612.1| (AE002373) 50S ribosomal
protein L5 [Neisseria meningitidis MC58]
Length = 179
Score = 83.5 bits (203), Expect = 2e-15
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M PRIEK+T+N+GVGE+ + + A LE++ GQKP+ A+K+ F IR P+
Sbjct: 26 MEVPRIEKITLNMGVGEAVADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPV 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLR + +E L RL+ R++ SFD GN G+ E I P +EYD
Sbjct: 86 GCKVTLRRDQMFEFLDRLITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDK 145
Query: 131 EIGIFGMDVCVT 142
+ G+++ +T
Sbjct: 146 IDALRGLNITIT 157
>pir||C82004 50S ribosomal protein L5 NMA0117 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7378889|emb|CAB83432.1| (AL162752) 50S ribosomal
protein L5 [Neisseria meningitidis Z2491]
Length = 179
Score = 83.5 bits (203), Expect = 2e-15
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M PRIEK+T+N+GVGE+ + + A LE++ GQKP+ A+K+ F IR P+
Sbjct: 26 MEVPRIEKITLNMGVGEAIADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPV 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLR + +E L RL+ R++ SFD GN G+ E I P +EYD
Sbjct: 86 GCKVTLRRDQMFEFLDRLITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDK 145
Query: 131 EIGIFGMDVCVT 142
+ G+++ +T
Sbjct: 146 IDALRGLNITIT 157
>pir||S40200 ribosomal protein L5 - Thermotoga maritima
Length = 184
Score = 83.1 bits (202), Expect = 2e-15
Identities = 50/128 (39%), Positives = 73/128 (56%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIM---LERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ K+ IN+G+GE E L ++TGQKPI +A+K+ +F IR+G PI +K
Sbjct: 33 PKLVKIVINMGIGEGSRNYDLIERHANELAKITGQKPIVTRARKSISNFKIRKGMPIGLK 92
Query: 80 VTLRGPKAYEMLKRLLAAV-----DNR-LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + Y L +L+ V D R L +SFD GN FG+ E + P ++ D
Sbjct: 93 VTLRGARMYSFLYKLINIVLPKVRDFRGLDPNSFDGRGNYSFGLSEQLVFPELDPDEVRR 152
Query: 134 IFGMDVCV 141
I GMD+ +
Sbjct: 153 IQGMDMTI 160
>sp|P24315|RL5_THETH 50S RIBOSOMAL PROTEIN L5 >gi|94726|pir||S15439 ribosomal protein L5
- Thermus aquaticus >gi|48106|emb|CAA39896.1| (X56552)
ribosomal protein L5 [Thermus aquaticus]
>gi|243185|gb|AAB21094.1| (S77828) ribosomal protein L5
[Thermus aquaticus, Peptide, 182 aa]
Length = 182
Score = 82.3 bits (200), Expect = 3e-15
Identities = 51/128 (39%), Positives = 72/128 (55%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
PR+EKV IN G+GE+ E L KA L + GQKP +AKK+ +F +R+G PI ++
Sbjct: 32 PRLEKVVINQGLGEAKEDARILEKASKELALIAGQKPAITRAKKSISNFKLRKGMPIGLR 91
Query: 80 VTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + + L++LL+ R L +SFD GN G+ E + P + YD
Sbjct: 92 VTLRGDRMWIFLEKLLSVALPRIRDFRGLNPNSFDGRGNYNLGLKEQLIFPEITYDMVDV 151
Query: 134 IFGMDVCV 141
GMD+ V
Sbjct: 152 PRGMDIAV 159
>sp|P41201|RL5_THEFL 50S RIBOSOMAL PROTEIN L5 >gi|243183|gb|AAB21093.1| (S77826)
ribosomal protein L5 [Thermus flavus, Peptide, 182 aa]
[Thermus aquaticus flavus]
Length = 182
Score = 82.3 bits (200), Expect = 3e-15
Identities = 51/128 (39%), Positives = 72/128 (55%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
PR+EKV IN G+GE+ E L KA L +TGQKP +AKK+ +F +R+G PI ++
Sbjct: 32 PRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLR 91
Query: 80 VTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLR + + L++LL R L +SFD GN G+ E + P + YD
Sbjct: 92 VTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDA 151
Query: 134 IFGMDVCV 141
+ GMD+ V
Sbjct: 152 LRGMDIAV 159
>pir||C81267 50S ribosomal protein L5 Cj1695c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969110|emb|CAB73681.1|
(AL139079) 50S ribosomal protein L5 [Campylobacter
jejuni]
Length = 181
Score = 80.8 bits (196), Expect = 1e-14
Identities = 50/153 (32%), Positives = 75/153 (48%), Gaps = 9/153 (5%)
Query: 18 HPMRKPRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGE 74
+PM P IEKV I++G GE + L + + GQK + KAKK+ F +R G
Sbjct: 24 NPMLIPVIEKVVISVGAGELAKDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGF 83
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEY 128
P+ V VTLR Y L +L++ R+K FD GN FG+DE + P VEY
Sbjct: 84 PVGVMVTLRKENMYAFLDKLISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEY 143
Query: 129 DPEIGIFGMDVCVTLERPGFRVARRKRKRAKIP 161
D + GM++ + + A++ + +P
Sbjct: 144 DKILRTHGMNISIVTTAQNDKQAQKLLELIGVP 176
>sp|P16168|RL11_DICDI 60S RIBOSOMAL PROTEIN L11 (L5) (VEGETATIVE SPECIFIC PROTEIN V18)
>gi|84141|pir||S07562 ribosomal protein L11.e - slime
mold (Dictyostelium discoideum) (fragment)
>gi|295738|emb|CAA33442.1| (X15382) V18 [Dictyostelium
discoideum]
Length = 79
Score = 80.0 bits (194), Expect = 2e-14
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
MR RIEK+ +NI VGESG+RL +A +LE+LTGQ P+ KA+ T R F IRR E IA
Sbjct: 1 MRGLRIEKLVLNICVGESGDRLVRAAKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAH 60
Query: 80 VTLRGPKAYEMLK 92
VT+RG KA E+L+
Sbjct: 61 VTVRGEKAAEILE 73
>pir||D82916 ribosomal protein L5 UU243 [imported] - Ureaplasma urealyticum
>gi|6899213|gb|AAF30652.1|AE002122_21 (AE002122)
ribosomal protein L5 [Ureaplasma urealyticum]
Length = 184
Score = 79.6 bits (193), Expect = 2e-14
Identities = 49/129 (37%), Positives = 68/129 (51%), Gaps = 9/129 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P+IEKV IN G+G + + L A L +TGQ+P+ KAKK+ F +R G+ I
Sbjct: 26 MQIPKIEKVVINAGIGNAVADKKHLEAAISELTLITGQRPVETKAKKSIATFKLRAGQSI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + + ++ L R++ +SFD GN GI E I P V YD
Sbjct: 86 GAKVTLRGDRMWAFIETLFNIALPRVRDFKGISNNSFDNQGNYTLGIKEQIIFPQVVYDD 145
Query: 131 EIGIFGMDV 139
+ G DV
Sbjct: 146 VKSVRGFDV 154
>emb|CAA34548.1| (X16548) ribosomal protein L5 (AA 1-181) [Cyanophora paradoxa]
Length = 181
Score = 78.4 bits (190), Expect = 5e-14
Identities = 47/128 (36%), Positives = 72/128 (55%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGE--RLTKAEIM-LERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P+++K+T+N G+GE+ + ++ +A + + +TGQK I +AKK F +R+ PI V
Sbjct: 30 PKLKKITVNRGLGEAAQNAKILEASVKEITEITGQKAIVTRAKKAIAGFKLRQDMPIGVM 89
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG Y L RL+ R++ A SFD GN G+ E + P V+YD
Sbjct: 90 VTLRGDYMYAFLDRLINLSLPRIRDFRGITAKSFDGRGNYNLGLKEQLIFPEVDYDSIEQ 149
Query: 134 IFGMDVCV 141
I GMD+ +
Sbjct: 150 IRGMDISI 157
>gi|11467335 ribosomal protein L5 [Cyanophora paradoxa]
>gi|1350652|sp|P14807|RK5_CYAPA CYANELLE 50S RIBOSOMAL
PROTEIN L5 >gi|7428672|pir||R5KT5 ribosomal protein L5 -
Cyanophora paradoxa cyanelle >gi|336651|gb|AAA63625.1|
(M30487) ribosomal protein l5 [Cyanophora paradoxa]
>gi|1016136|gb|AAA81223.1| (U30821) ribosomal protein L5
[Cyanophora paradoxa]
Length = 181
Score = 78.0 bits (189), Expect = 7e-14
Identities = 47/128 (36%), Positives = 72/128 (55%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGE--RLTKAEIM-LERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P+++K+T+N G+GE+ + ++ +A + + +TGQK I +AKK F +R+ PI V
Sbjct: 30 PKLKKITVNRGLGEAAQNAKILEASVKEITEITGQKAIVTRAKKAIAGFKLRQDMPIGVM 89
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG Y L RL+ R++ A SFD GN G+ E + P V+YD
Sbjct: 90 VTLRGDYMYAFLDRLINLSLPRIRDFRGITAKSFDGRGNYNLGLKEQLIFPEVDYDGIEQ 149
Query: 134 IFGMDVCV 141
I GMD+ +
Sbjct: 150 IRGMDISI 157
>sp|Q50306|RL5_MYCPN 50S RIBOSOMAL PROTEIN L5 >gi|2127651|pir||S62829 ribosomal protein
L5 - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|2146616|pir||S73980 ribosomal protein L5 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1215711|gb|AAC43704.1| (U34795) RplE [Mycoplasma
pneumoniae] >gi|1674359|gb|AAB96302.1| (AE000061)
ribosomal protein L5 [Mycoplasma pneumoniae]
Length = 180
Score = 78.0 bits (189), Expect = 7e-14
Identities = 49/129 (37%), Positives = 68/129 (51%), Gaps = 9/129 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ PR+EK+ IN+GVG++ + L A L ++GQKP+ KAK + +R G+ I
Sbjct: 26 MQVPRLEKIVINMGVGDAIRDSKFLESALNELHLISGQKPVATKAKNAISTYKLRAGQLI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLRG + + L++L+ R L SFD GN GI E I P + YD
Sbjct: 86 GCKVTLRGERMWAFLEKLIYVALPRVRDFRGLSLKSFDGRGNYTIGIKEQIIFPEIVYDD 145
Query: 131 EIGIFGMDV 139
I G DV
Sbjct: 146 IKRIRGFDV 154
>gi|11466515 ribosomal protein L5 [Reclinomonas americana]
>gi|3914786|sp|O21252|RM05_RECAM MITOCHONDRIAL 60S
RIBOSOMAL PROTEIN L5 >gi|7440668|pir||S78146 ribosomal
protein L5 - Reclinomonas americana (ATCC 50394)
mitochondrion >gi|2258345|gb|AAD11879.1| (AF007261)
ribosomal protein L5 [Reclinomonas americana]
Length = 182
Score = 78.0 bits (189), Expect = 7e-14
Identities = 45/135 (33%), Positives = 80/135 (58%), Gaps = 11/135 (8%)
Query: 18 HPMRKPRIEKVTINIGVGESG---ERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGE 74
+P P+I+K+ +N+GV E+ +++ ++LE +TGQK I KAKK+ +F IR+G
Sbjct: 24 NPHMVPKIDKIIVNMGVKEAASDKKQILAPLLILELITGQKAIVTKAKKSISNFKIRKGF 83
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGV-- 126
PI V VTLRG YE L +L+ V +++ +S +++G++ GI + + P +
Sbjct: 84 PIGVSVTLRGNNMYEFLSKLITLVLPKIRDFKGVPFTSINKYGHLAIGIKDLLVFPEIES 143
Query: 127 EYDPEIGIFGMDVCV 141
EYD ++G ++ +
Sbjct: 144 EYDKFNRVYGANIVI 158
>pir||T01713 ribosomal protein L5, organellar - Arabidopsis thaliana
>gi|2191128|gb|AAB61015.1| (AF007269) belongs to the L5P
family of ribosomal proteins [Arabidopsis thaliana]
>gi|7267628|emb|CAB80940.1| (AL161491) putative L5
ribosomal protein [Arabidopsis thaliana]
Length = 262
Score = 76.9 bits (186), Expect = 2e-13
Identities = 42/129 (32%), Positives = 69/129 (52%), Gaps = 9/129 (6%)
Query: 23 PRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P+++K+ +N G+G++ + L A + +TGQKPI+ +A+ + F IR +P+ +
Sbjct: 84 PKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIA 143
Query: 80 VTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG Y L RL+ R + SSFD +GN G+ + P + +D
Sbjct: 144 VTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRFDAVGK 203
Query: 134 IFGMDVCVT 142
GMDVC++
Sbjct: 204 TRGMDVCIS 212
>sp|Q9ZCR7|RL5_RICPR 50S RIBOSOMAL PROTEIN L5 >gi|7440671|pir||E71670 ribosomal protein
L5 - Rickettsia prowazekii >gi|3861187|emb|CAA15087.1|
(AJ235272) 50S RIBOSOMAL PROTEIN L5 (rplE) [Rickettsia
prowazekii]
Length = 179
Score = 76.9 bits (186), Expect = 2e-13
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P+I+K+ IN+GVGE+ + + A L ++GQKP+ A+K+ F +R I K
Sbjct: 29 PKIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCK 88
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLKA------SSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLR + Y+ L+RL+ R+K SFD GN FG+ E I P + YD
Sbjct: 89 VTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDT 148
Query: 134 IFGMDVCV 141
I GMD+ +
Sbjct: 149 IRGMDITI 156
>sp|O24701|RL5_SYNP6 50S RIBOSOMAL PROTEIN L5 >gi|2446902|dbj|BAA22461.1| (AB000111) 50S
ribosomal protein L5 [Synechococcus sp.]
Length = 179
Score = 76.5 bits (185), Expect = 2e-13
Identities = 49/150 (32%), Positives = 71/150 (46%), Gaps = 9/150 (6%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLE---RLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ KVTIN G+GE + E L ++ GQKP+ +AKK F IR G P+ +
Sbjct: 28 PKVVKVTINRGLGEGAQNAKALESSLAEIAKIAGQKPVVTRAKKAIAGFKIRAGMPVGLM 87
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + L+RL+ R++ SFD GN G+ E + P + YD
Sbjct: 88 VTLRGDRRDAFLERLINLSLPRIRDFRGISPRSFDGRGNYTLGLREQLIFPEITYDSIDQ 147
Query: 134 IFGMDVCVTLERPGFRVARRKRKRAKIPTR 163
I GMD+ + R + +P R
Sbjct: 148 IRGMDITIVTSANSDEEGRALLRELGMPFR 177
>gi|11465768 50S ribosomal protein L5 [Porphyra purpurea]
>gi|1710476|sp|P51302|RK5_PORPU CHLOROPLAST 50S
RIBOSOMAL PROTEIN L5 >gi|2147066|pir||S73223 ribosomal
protein L5, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276768|gb|AAC08188.1| (U38804) 50S
ribosomal protein L5 [Porphyra purpurea]
Length = 181
Score = 75.7 bits (183), Expect = 3e-13
Identities = 46/128 (35%), Positives = 67/128 (51%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGEPIAVK 79
PR K+TIN G+GE+ + E ++ LT GQKPI +AKK+ F IR PI +
Sbjct: 30 PRFTKITINRGLGEASQNAKALESSIQELTLITGQKPIVTRAKKSIAGFKIREEVPIGIV 89
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
V LR K Y L++L+ R++ SFD GN G+ E + P ++YD
Sbjct: 90 VHLRKDKMYSFLEKLINLTLPRIRDFRGISPKSFDGKGNYNLGLREQLIFPEIDYDNIDQ 149
Query: 134 IFGMDVCV 141
I G+D+ +
Sbjct: 150 IRGLDISI 157
>sp|Q9XD24|RL5_LEPIN 50S RIBOSOMAL PROTEIN L5 >gi|5163216|gb|AAD40595.1|AF115283_14
(AF115283) ribosomal protein L5 [Leptospira interrogans]
Length = 182
Score = 75.7 bits (183), Expect = 3e-13
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 20 MRKPRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ PR+EK+ +N+G+GE+ E +E L TGQ+P++ KAKK+ F IR G +
Sbjct: 27 MQVPRLEKIVLNVGMGEAHTNPKALEAAVEELALITGQRPVKTKAKKSIAGFKIREGMSL 86
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
VTLRG YE L RL+ R++ FD GN I E + P ++ D
Sbjct: 87 GCMVTLRGDYMYEFLDRLVNVALPRVRDFKGVSEKGFDGRGNYNMSIKEQVIFPEIKVDK 146
Query: 131 EIGIFGMDV 139
++G+++
Sbjct: 147 INTLYGINM 155
>gi|11467729 ribosomal protein L5 [Guillardia theta]
>gi|3914663|sp|O46906|RK5_GUITH CHLOROPLAST 50S
RIBOSOMAL PROTEIN L5 >gi|3603054|gb|AAC35715.1|
(AF041468) ribosomal protein L5 [Guillardia theta]
Length = 181
Score = 75.3 bits (182), Expect = 5e-13
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 24 RIEKVTINIGVGESGE--RLTKAEIM-LERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKV 80
+I K+T+N G+GE+ + ++ +A I E ++GQ P+ KA+K+ F IR G P+ + V
Sbjct: 31 KITKITLNRGLGEASKNNKILEASIKEFELISGQHPLINKARKSVAGFKIREGMPVGISV 90
Query: 81 TLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIGI 134
TLR Y L++L+ R++ SFD GN GI E + P +EYD +
Sbjct: 91 TLRKKLMYTFLEKLIHLSLPRIRDFRGVSVKSFDGRGNYNLGIKEQLIFPEIEYDQVDQV 150
Query: 135 FGMDVCVT 142
G+D+ +T
Sbjct: 151 RGLDISIT 158
>sp|P95064|RL5_MYCTU 50S RIBOSOMAL PROTEIN L5 >gi|7440662|pir||G70643 probable ribosomal
protein L5 - Mycobacterium tuberculosis (strain H37RV)
>gi|1806184|emb|CAB06440.1| (Z84395) rplE [Mycobacterium
tuberculosis]
Length = 187
Score = 74.5 bits (180), Expect = 8e-13
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESG---ERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P + KV +N+GVGE+ + + A L +TGQKP R+A+K+ F +R G P+
Sbjct: 33 MQIPTVTKVVVNMGVGEAARDAKLINGAVNDLALITGQKPEVRRARKSIAQFKLREGMPV 92
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
V+VTLRG + +E L RL + R L FD GN FG+ E V+ D
Sbjct: 93 GVRVTLRGDRMWEFLDRLTSIALPRIRDFRGLSPKQFDGVGNYTFGLAEQAVFHEVDVDK 152
Query: 131 EIGIFGMDVCV 141
+ GMD+ V
Sbjct: 153 IDRVRGMDINV 163
>sp|P47409|RL5_MYCGE 50S RIBOSOMAL PROTEIN L5 >gi|1361818|pir||A64218 ribosomal protein
L5 - Mycoplasma genitalium >gi|3844757|gb|AAC71381.1|
(U39696) ribosomal protein L5 (rpL5) [Mycoplasma
genitalium]
Length = 180
Score = 74.1 bits (179), Expect = 1e-12
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P++ K+ +N+GVG++ + L A L +TGQKP+ KAK + +R G+ I
Sbjct: 26 MQVPKLTKIVVNMGVGDAIRDNKFLESALNELHLITGQKPVATKAKNAISTYKLRAGQLI 85
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
KVTLR K + L++L+ R L SFD GN GI E I P + YD
Sbjct: 86 GCKVTLRNKKMWSFLEKLIYIALPRVRDFRGLSLRSFDGKGNYTIGIKEQIIFPEIVYDD 145
Query: 131 EIGIFGMDVCV 141
I G D+ +
Sbjct: 146 IKRIRGFDITI 156
>sp|Q9ZJS4|RL5_HELPJ 50S RIBOSOMAL PROTEIN L5 >gi|7440680|pir||C71834 ribosomal protein
L5 - Helicobacter pylori (strain J99)
>gi|4155819|gb|AAD06793.1| (AE001547) 50S RIBOSOMAL
PROTEIN L5 [Helicobacter pylori J99]
Length = 181
Score = 74.1 bits (179), Expect = 1e-12
Identities = 43/131 (32%), Positives = 70/131 (52%), Gaps = 9/131 (6%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGE 74
+PM P++EK+ I++G G + + + + + ++ GQK + KAKK+ F IR G
Sbjct: 24 NPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLVAGQKAVITKAKKSVAGFKIREGM 83
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEY 128
+ KVTLR + Y L++L+ R+K + FD GN FGI+E + P V Y
Sbjct: 84 AVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRNGFDGRGNYTFGINEQLIFPEVVY 143
Query: 129 DPEIGIFGMDV 139
D + GM++
Sbjct: 144 DDIMVSHGMNI 154
>emb|CAB82082.1| (AL161803) 50S ribosomal protein L5 [Streptomyces coelicolor A3(2)]
Length = 185
Score = 74.1 bits (179), Expect = 1e-12
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESGE--RLTKAEIM-LERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P + K+ +N+GVG++ +L + I L +TGQKP KA+K+ F +R G+PI
Sbjct: 31 MQIPGLVKIVVNMGVGDAARDSKLIEGAIRDLTTITGQKPAVTKARKSIAQFKLREGQPI 90
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
VTLRG + +E L R L+ R L FD GN FG+ E + ++ D
Sbjct: 91 GAHVTLRGDRMWEFLDRTLSLALPRIRDFRGLSPKQFDGRGNYTFGLTEQVMFHEIDQDK 150
Query: 131 EIGIFGMDVCV 141
GMD+ V
Sbjct: 151 IDRTRGMDITV 161
>gb|AAC64970.1| (AF095708) 50S ribosomal protein L5 [Oryza sativa]
Length = 280
Score = 73.7 bits (178), Expect = 1e-12
Identities = 47/128 (36%), Positives = 67/128 (51%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVG-ESGER--LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++EK+ +N G+G E+G L A L +TGQ P++ KAKK+ F IR G I +
Sbjct: 104 PKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGNTIGIA 163
Query: 80 VTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + L RL+ R + +SFD HGN G+ + P + Y+
Sbjct: 164 VTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRDQGVFPEIPYEVGGK 223
Query: 134 IFGMDVCV 141
GMDVC+
Sbjct: 224 KNGMDVCI 231
>sp|O83231|RL5_TREPA 50S RIBOSOMAL PROTEIN L5 >gi|7440661|pir||C71356 probable ribosomal
protein L5 (rplE) - syphilis spirochete
>gi|3322465|gb|AAC65186.1| (AE001202) ribosomal protein
L5 (rplE) [Treponema pallidum]
Length = 185
Score = 73.4 bits (177), Expect = 2e-12
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 9/153 (5%)
Query: 20 MRKPRIEKVTINIGVGES--GERLTKAEIM-LERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P++ K+ +++G+GE+ +L A + L ++GQ ++ +A+K+ +F +R G I
Sbjct: 32 MQVPKLLKIVLSMGLGEALANRKLLDASVADLGVISGQHAVKTRARKSIANFKLREGNEI 91
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDP 130
V VTLR + YE L RL+ R+K FD HGN GI E I P +++D
Sbjct: 92 GVMVTLRRSRMYEFLHRLINVALPRVKDFRGVSPXGFDGHGNYSMGITEQIIFPEIDFDK 151
Query: 131 EIGIFGMDVCVTLERPGFRVARRKRKRAKIPTR 163
I G++V V + AR + +P R
Sbjct: 152 IERISGLNVNVVTSAQTDQEARTLLTKLGMPFR 184
>gb|AAF64313.1|AF250923_1 (AF250923) plastid ribosomal protein PRPL5 [Spinacia oleracea]
Length = 207
Score = 73.4 bits (177), Expect = 2e-12
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P++ K+ +N G+G++ + + + L TGQ+P++ KAK + F +R G + +
Sbjct: 31 PKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIA 90
Query: 80 VTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDPEI- 132
VTLRG Y L RL+ R + +SFD HGN G E P E PEI
Sbjct: 91 VTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFP--EIKPEIV 148
Query: 133 -GIFGMDVCVT 142
GMDVC+T
Sbjct: 149 GKARGMDVCIT 159
>sp|P33098|RL5_MICLU 50S RIBOSOMAL PROTEIN L5 >gi|322075|pir||S29884 Ribosomal protein
L5 - Micrococcus luteus >gi|44428|emb|CAA35560.1|
(X17524) L5 protein [Micrococcus luteus]
Length = 191
Score = 73.0 bits (176), Expect = 2e-12
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P + KV +N+GVGE+ + + A L +TGQKP+ KA+K+ F +R G PI
Sbjct: 36 MQVPGLVKVVVNMGVGEAAKDSKIIDDAVTDLTAITGQKPMITKARKSIAQFKLREGMPI 95
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
TLRG + +E L RL+ R L FD +GN FG+ E ++ D
Sbjct: 96 GTHATLRGDRMWEFLDRLVTLPLPRIRDFRGLSDRQFDGNGNYTFGLSEQTVFHEIDQDK 155
Query: 131 EIGIFGMDVCV 141
+ GMD+ V
Sbjct: 156 IDRVRGMDITV 166
>sp|P56033|RL5_HELPY 50S RIBOSOMAL PROTEIN L5 >gi|7440666|pir||C64683 ribosomal protein
L5 - Helicobacter pylori (strain 26695)
>gi|2314470|gb|AAD08347.1| (AE000633) ribosomal protein
L5 (rpl5) [Helicobacter pylori 26695]
Length = 181
Score = 73.0 bits (176), Expect = 2e-12
Identities = 43/131 (32%), Positives = 70/131 (52%), Gaps = 9/131 (6%)
Query: 18 HPMRKPRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGE 74
+PM P++EK+ I++G G + + + + + ++ GQK + KAKK+ F IR G
Sbjct: 24 NPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLIAGQKAVITKAKKSVAGFKIREGM 83
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEY 128
+ KVTLR + Y L++L+ R+K + FD GN FGI+E + P V Y
Sbjct: 84 AVGAKVTLRNKRMYNFLEKLIVISLPRVKDFRGISRNGFDGCGNYTFGINEQLIFPEVVY 143
Query: 129 DPEIGIFGMDV 139
D + GM++
Sbjct: 144 DDIMVSHGMNI 154
>gi|11467771 ribosomal protein L5 [Nephroselmis olivacea]
>gi|5880700|gb|AAD54793.1|AF137379_16 (AF137379)
ribosomal protein L5 [Nephroselmis olivacea]
Length = 184
Score = 73.0 bits (176), Expect = 2e-12
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLERLT---GQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P I+K+ IN G+G++ + + L+ LT GQ+ + ++K+ F IR+ P+ +
Sbjct: 30 PSIKKIVINRGLGDASQNAKLLDGSLQELTTIAGQRGVITRSKQAIAAFKIRQDMPVGIS 89
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG + Y L RL+ R++ SFD GN G++E + P + YD
Sbjct: 90 VTLRGERMYAFLDRLINLALPRIRDFQGMSTKSFDGQGNYSLGLNEQLMFPEINYDAIDQ 149
Query: 134 IFGMDVCV----TLERPGF 148
+ GMD+ + T +R GF
Sbjct: 150 MRGMDISIITSATEDREGF 168
>gi|11467013 50S ribosomal protein L5 [Euglena gracilis]
>gi|132994|sp|P21510|RK5_EUGGR CHLOROPLAST 50S RIBOSOMAL
PROTEIN L5 >gi|279646|pir||R5EG5 ribosomal protein L5 -
Euglena gracilis chloroplast >gi|14374|emb|CAA77924.1|
(Z11874) ribosomal protein L5 [Euglena gracilis]
>gi|415763|emb|CAA50107.1| (X70810) 50S ribosomal
protein L5 [Euglena gracilis]
Length = 179
Score = 72.2 bits (174), Expect = 4e-12
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 21 RKPRIEKVTINIGVGESGERLTKAEIMLERL---TGQKPIRRKAKKTNRDFGIRRGEPIA 77
R P+++K+ IN G ES + E++L L +GQKPI KAKK +F ++ P+
Sbjct: 27 RVPKLKKIVINRGFDESCQNSKILEVLLNELEIISGQKPIISKAKKAIANFKLKEKMPVG 86
Query: 78 VKVTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPE 131
+ +TLR K Y L RL+ R++ + FD GN FG+ E P + +D
Sbjct: 87 MFLTLRSEKMYSFLDRLINLSLPRIRDFQGINKNCFDGSGNFSFGLSEQSMFPEINFDKM 146
Query: 132 IGIFGMDVCV 141
I + G+++ +
Sbjct: 147 IKVQGLNITI 156
>gi|11465434 unknown; 50S ribosomal protein L5 [Cyanidium caldarium]
>gi|6466337|gb|AAF12919.1|AF022186_41 (AF022186)
unknown; 50S ribosomal protein L5 [Cyanidium caldarium]
Length = 182
Score = 72.2 bits (174), Expect = 4e-12
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Query: 23 PRIEKVTINIGVGESGERLTK------AEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
P++ K+T+N G+G ++ K +++ML +TGQKP K+KK+ F +R G +
Sbjct: 31 PKLTKITLNRGLGTLYQQSPKVFESSVSDLML--ITGQKPRFNKSKKSIAGFKLREGTVV 88
Query: 77 AVKVTLRGPKAYEMLKRLL-----AAVDNR-LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
+ VTLR K Y L++L+ AA D R L +FD GN GI EH P +++D
Sbjct: 89 GLSVTLRRKKMYAFLEKLIHFSLPAARDFRGLSTKNFDGLGNYNLGIKEHAIFPEIDFDK 148
Query: 131 EIGIFGMDVCV 141
+G+++C+
Sbjct: 149 IDHSYGLNICI 159
>sp|O32995|RL5_MYCLE 50S RIBOSOMAL PROTEIN L5 >gi|11276702|pir||T45378 ribosomal protein
L5 [imported] - Mycobacterium leprae
>gi|2344846|emb|CAB11448.1| (Z98756) ribosomal protein
L5 [Mycobacterium leprae]
Length = 187
Score = 71.4 bits (172), Expect = 7e-12
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 20 MRKPRIEKVTINIGVGESG---ERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPI 76
M+ P + KV +N+GVG++ + + A L +TGQKP RKA+K+ F +R G PI
Sbjct: 33 MQIPTVVKVVVNMGVGDAARDAKLINGAVSDLALITGQKPEVRKARKSIAQFKLREGMPI 92
Query: 77 AVKVTLRGPKAYEMLKRLLAAVDNR------LKASSFDEHGNVCFGIDEHINIPGVEYDP 130
V+VTLR + +E L RL + R L FD GN FG+ E ++ D
Sbjct: 93 GVRVTLRDDRMWEFLDRLTSIALPRIRDFRGLSPKQFDGVGNYTFGLAEQSVFHEIDVDK 152
Query: 131 EIGIFGMDVCV 141
+ GMD+ V
Sbjct: 153 IDRVRGMDINV 163
>sp|P14757|RK5_ASTLO CHLOROPLAST 50S RIBOSOMAL PROTEIN L5 >gi|71103|pir||R5IT5 ribosomal
protein L5 - euglenid (Astasia longa) plastid
>gi|11196|emb|CAA32554.1| (X14384) ribosomal protein L5
(AA 1 - 179) [Astasia longa] >gi|16008|emb|CAA34138.1|
(X16004) ribosomal protein L5 [Astasia longa]
>gi|414856|emb|CAA53309.1| (X75651) 50s ribosomal
protein L5 [Astasia longa]
Length = 179
Score = 69.5 bits (167), Expect = 3e-11
Identities = 44/128 (34%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGES---GERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P+I KV I+ G GES + L + L+ ++GQKPI K+K + +F +++G PI +
Sbjct: 29 PKINKVVISRGFGESCNSSKILESLLVELKNISGQKPILCKSKNSISNFKVKKGMPIGMF 88
Query: 80 VTLRGPKAYEMLKRLL------AAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTL G K Y L RL+ N L FD GN G+ E P +EY +
Sbjct: 89 VTLHGDKMYSFLDRLINLSFPRMRDFNGLNIKGFDGFGNYNVGLSEQSIFPEIEYSSILK 148
Query: 134 IFGMDVCV 141
GM++ +
Sbjct: 149 NKGMNITI 156
>gi|7524925 50S ribosomal protein L5 [Chlorella vulgaris]
>gi|3024534|sp|P56362|RK5_CHLVU CHLOROPLAST 50S
RIBOSOMAL PROTEIN L5 >gi|7440678|pir||T07355 ribosomal
protein L5 - Chlorella vulgaris chloroplast
>gi|2224519|dbj|BAA58003.1| (AB001684) 50S ribosomal
protein L5 [Chlorella vulgaris]
Length = 180
Score = 69.5 bits (167), Expect = 3e-11
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 23 PRIEKVTINIGVGESGERLTKAEIMLER---LTGQKPIRRKAKKTNRDFGIRRGEPIAVK 79
P+++K+ IN G+G++ + E + +T Q+ + ++KK F +R P+ +
Sbjct: 30 PKLDKIVINRGLGDASQNAKVLESCSKEQSIITRQQGVVTRSKKAIASFKLREKMPVGLV 89
Query: 80 VTLRGPKAYEMLKRLLAAVDNRLK------ASSFDEHGNVCFGIDEHINIPGVEYDPEIG 133
VTLRG K Y L RL+ R++ SFD GN G++E + P ++YD
Sbjct: 90 VTLRGDKMYAFLDRLINLALPRIRDFQGVSRKSFDGRGNYSLGLEEQLMFPEIDYDKIDQ 149
Query: 134 IFGMDVCV 141
I GMDV +
Sbjct: 150 IRGMDVSI 157
>gi|11467458 50S ribosomal protein L5 [Odontella sinensis]
>gi|1350653|sp|P49547|RK5_ODOSI CHLOROPLAST 50S
RIBOSOMAL PROTEIN L5 >gi|7440664|pir||S78263 ribosomal
protein L5, chloroplast - Odontella sinensis chloroplast
>gi|1185153|emb|CAA91636.1| (Z67753) 50S ribosomal
protein L5 [Odontella sinensis]
Length = 238
Score = 67.9 bits (163), Expect = 8e-11
Identities = 43/121 (35%), Positives = 63/121 (51%), Gaps = 9/121 (7%)
Query: 18 HPMRKPRIEKVTINIGVGESGER---LTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGE 74
+P P+++K+ IN G+G + + L K+ +TGQKPI +AKK F IR
Sbjct: 42 NPHTIPKLQKIQINRGLGLAAQNTNILKKSINEFTAITGQKPIITRAKKAIAGFKIRENM 101
Query: 75 PIAVKVTLRGPKAYEMLKRLLAAV-----DNR-LKASSFDEHGNVCFGIDEHINIPGVEY 128
+ + VTLRG K Y L +L+ D R L SFD+ GN G+ E + P ++Y
Sbjct: 102 ELGLTVTLRGSKMYSFLTKLIFFTFAQIRDFRGLSVRSFDKAGNYTLGLKEQLIFPEIDY 161
Query: 129 D 129
D
Sbjct: 162 D 162
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69276849
Number of Sequences: 2977
Number of extensions: 2775753
Number of successful extensions: 5558
Number of sequences better than 1.0e-10: 100
Number of HSP's better than 0.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 5369
Number of HSP's gapped (non-prelim): 100
length of query: 188
length of database: 189,106,746
effective HSP length: 54
effective length of query: 134
effective length of database: 156,788,448
effective search space: 21009652032
effective search space used: 21009652032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)