BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2131 (rps8E) DE:SSU ribosomal protein S8P (rps8E)
(130 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75146 ssu ribosomal protein s8p (rps8e) PAB2131 - Pyrococc... 263 8e-70
sp|O59432|RS8_PYRHO 30S RIBOSOMAL PROTEIN S8P >gi|7440252|pir||G... 254 4e-67
sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|2119073|pir||F... 208 3e-53
sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8P >gi|70917|pir||R3M... 185 2e-46
sp|O26126|RS8_METTH 30S RIBOSOMAL PROTEIN S8P >gi|7440253|pir||D... 171 4e-42
sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8P (HMAS8) (HS16) >gi... 152 1e-36
gi|11499494 SSU ribosomal protein S8P (rps8E) [Archaeoglobus ful... 146 7e-35
gi|6322271 Ribosomal protein S22A (S24A) (rp50) (YS22); Rps22ap ... 146 1e-34
gi|6323399 Ribosomal protein S22B (S24B) (rp50) (YS22); Rps22bp ... 145 2e-34
emb|CAC12380.1| (AL445067) probable 30S ribosomal protein S8 [Th... 145 2e-34
sp|P33953|RS22_KLUMA 40S RIBOSOMAL PROTEIN S22 (S15A) (YS24) >gi... 145 3e-34
gb|AAK41004.1| SSU ribosomal protein S8AB (rps8AB) [Sulfolobus s... 141 3e-33
sp|Q9UX92|RS8_SULSO 30S RIBOSOMAL PROTEIN S8P >gi|6015773|emb|CA... 141 3e-33
sp|Q9YF89|RS8_AERPE 30S RIBOSOMAL PROTEIN S8P >gi|7440259|pir||G... 139 1e-32
gi|11432121 ribosomal protein S15a [Homo sapiens] >gi|1173220|sp... 139 2e-32
gi|4506689 ribosomal protein S15a [Homo sapiens] >gi|1082767|pir... 138 4e-32
emb|CAB56626.1| (AJ249788) ribosomal protein 22 of the small sub... 136 8e-32
dbj|BAA89231.1| (AB018560) wrp15a [Citrullus lanatus] 136 8e-32
gb|AAF61072.1|AF220553_1 (AF220553) 40S ribosomal protein S15A [... 136 8e-32
sp|O14469|RS22_SCHPO 40S RIBOSOMAL PROTEIN S22 >gi|7489974|pir||... 136 1e-31
sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8) >gi|9982... 135 2e-31
sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|440824|gb|AA... 135 2e-31
sp|O05636|RS8_SULAC 30S RIBOSOMAL PROTEIN S8P >gi|2052261|emb|CA... 134 4e-31
pir||T49245 cytoplasmic ribosomal protein S15a-like - Arabidopsi... 134 5e-31
sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|422493|pir||... 133 9e-31
gb|AAB70989.1| (AF025460) contains similarity to Pfam domain PF0... 132 1e-30
emb|CAA42600.1| (X59984) r-protein BnS15a [Brassica napus] 132 2e-30
sp|P46792|RS22_AGABI 40S RIBOSOMAL PROTEIN S22 (S15A) >gi|895693... 131 3e-30
gb|AAF58746.1| (AE003828) CG12324 gene product [Drosophila melan... 131 3e-30
pir||T00569 ribosomal protein S15a, cytosolic - Arabidopsis thal... 127 5e-29
sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24) >gi|283751... 126 9e-29
pir||JC4713 ribosomal protein S15a.e - sea urchin (Paracentrotus... 125 2e-28
sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|116645... 124 5e-28
sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|881426... 123 8e-28
pir||S22051 ribosomal protein S15a.e - human >gi|36142|emb|CAA44... 120 5e-27
gb|AAG19951.1| (AE005077) 30S ribosomal protein S8P; Rps8p [Halo... 120 5e-27
pir||T18510 hypothetical protein C0735w - malaria parasite (Plas... 116 1e-25
emb|CAB79701.1| (AL161575) ribosomal protein S15a homolog [Arabi... 96 2e-19
gb|AAC62143.1| (AC005169) 40S ribosomal protein S15A [Arabidopsi... 89 2e-17
sp|P56209|RS8_BACST 30S RIBOSOMAL PROTEIN S8 (BS8) 81 5e-15
pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8 >gi|19... 79 2e-14
pir||G69699 ribosomal protein S8 - Bacillus subtilis >gi|1644197... 79 2e-14
sp|P12879|RS8_BACSU 30S RIBOSOMAL PROTEIN S8 (BS8) >gi|1044978|g... 78 3e-14
sp|Q9Z9K0|RS8_BACHD 30S RIBOSOMAL PROTEIN S8 >gi|11276562|pir||T... 75 3e-13
sp|Q9ZAE5|RS8_THEMA 30S RIBOSOMAL PROTEIN S8 >gi|7440263|pir||F7... 75 3e-13
>pir||A75146 ssu ribosomal protein s8p (rps8e) PAB2131 - Pyrococcus abyssi
(strain Orsay) >gi|5457758|emb|CAB49248.1| (AJ248284)
SSU ribosomal protein S8P (rps8E) [Pyrococcus abyssi]
Length = 130
Score = 263 bits (664), Expect = 8e-70
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV
Sbjct: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG
Sbjct: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
Query: 121 IGGRLIAYVY 130
IGGRLIAYVY
Sbjct: 121 IGGRLIAYVY 130
>sp|O59432|RS8_PYRHO 30S RIBOSOMAL PROTEIN S8P >gi|7440252|pir||G71185 probable
ribosomal protein S8 - Pyrococcus horikoshii
>gi|3258195|dbj|BAA30878.1| (AP000007) 130aa long
hypothetical 30S ribosomal protein S8 [Pyrococcus
horikoshii]
Length = 130
Score = 254 bits (641), Expect = 4e-67
Identities = 123/130 (94%), Positives = 129/130 (98%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
MTLLDPLANALSHITNSERVGKRE+YIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV
Sbjct: 1 MTLLDPLANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
YRVQLLG+INKAGAIKPRFPVKA +YE+WEKRFLPAFEFGILIVSTSQGVMSHKEAR++G
Sbjct: 61 YRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRG 120
Query: 121 IGGRLIAYVY 130
IGGRLIAYVY
Sbjct: 121 IGGRLIAYVY 130
>sp|P54041|RS8_METJA 30S RIBOSOMAL PROTEIN S8P >gi|2119073|pir||F64358 ribosomal protein
S8 - Methanococcus jannaschii >gi|1591172|gb|AAB98459.1|
(U67497) SSU ribosomal protein S8P (rpsH) [Methanococcus
jannaschii]
Length = 130
Score = 208 bits (523), Expect = 3e-53
Identities = 97/130 (74%), Positives = 120/130 (91%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M+L+DPLANAL+HI+N ERVGK+ VYIKPASKLIG VL+VMQ GYIGEFEFI+DGRAG+
Sbjct: 1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGI 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
++V+L+GKINK GAIKPRFPVK YE++EKR+LPA +FGILIVST+QGVMSH+EA+++G
Sbjct: 61 FKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRG 120
Query: 121 IGGRLIAYVY 130
+GGRL+AYVY
Sbjct: 121 LGGRLLAYVY 130
>sp|P14038|RS8_METVA 30S RIBOSOMAL PROTEIN S8P >gi|70917|pir||R3MX8 ribosomal protein S8
- Methanococcus vannielii >gi|44763|emb|CAA34695.1|
(X16720) rpS8 (AA 1-130) [Methanococcus vannielii]
Length = 130
Score = 185 bits (464), Expect = 2e-46
Identities = 84/130 (64%), Positives = 111/130 (84%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M+L+DPLANAL+H++N E VGK Y+KPASKLIG VL+VMQ GYIG FE+I+DG+AGV
Sbjct: 1 MSLMDPLANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGV 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
Y+V L+G+INK GA+KPR+ VK +++E++EKR+LPA FG+LIVST +G+M+H EAR G
Sbjct: 61 YKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAG 120
Query: 121 IGGRLIAYVY 130
+GGRLI+YVY
Sbjct: 121 VGGRLISYVY 130
>sp|O26126|RS8_METTH 30S RIBOSOMAL PROTEIN S8P >gi|7440253|pir||D69107 ribosomal protein
S8 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621046|gb|AAB84519.1| (AE000795) ribosomal
protein S15a (E.coli S8) [Methanobacterium
thermoautotrophicum]
Length = 133
Score = 171 bits (428), Expect = 4e-42
Identities = 82/130 (63%), Positives = 105/130 (80%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
+TL+DPLANAL++I N+E G + I PASKLIG VLR MQK GYIGEFE++DDGRAG
Sbjct: 4 VTLMDPLANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGK 63
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
+ V+L G IN G IKPR VK ++E++EKR+LPA FGI+IVST +G+M+HKEA+++G
Sbjct: 64 FIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRG 123
Query: 121 IGGRLIAYVY 130
IGGRL+AYVY
Sbjct: 124 IGGRLLAYVY 133
>sp|P12742|RS8_HALMA 30S RIBOSOMAL PROTEIN S8P (HMAS8) (HS16) >gi|81010|pir||S16537
ribosomal protein S8 [validated] - Haloarcula
marismortui >gi|48863|emb|CAA41286.1| (X58395) ribosomal
protein [Haloarcula marismortui]
>gi|228186|prf||1718307C ribosomal protein S8
[Haloarcula marismortui]
Length = 130
Score = 152 bits (381), Expect = 1e-36
Identities = 72/130 (55%), Positives = 94/130 (71%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
MT DP ANALS + N+E VG E + PAS IG VL V GYI F F+DDG+AG
Sbjct: 1 MTGNDPFANALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGE 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
+ V+L G IN+ G +KPR+ A ++E+WEKRFLPA ++G L+V+TS G+MSH EARE+G
Sbjct: 61 FEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQG 120
Query: 121 IGGRLIAYVY 130
+GG++IAYVY
Sbjct: 121 VGGQVIAYVY 130
>gi|11499494 SSU ribosomal protein S8P (rps8E) [Archaeoglobus fulgidus]
>gi|3914919|sp|O28369|RS8_ARCFU 30S RIBOSOMAL PROTEIN
S8P >gi|7440254|pir||E69488 SSU ribosomal protein S8P
(rps8E) homolog - Archaeoglobus fulgidus
>gi|2648631|gb|AAB89341.1| (AE000971) SSU ribosomal
protein S8P (rps8E) [Archaeoglobus fulgidus]
Length = 131
Score = 146 bits (366), Expect = 7e-35
Identities = 71/127 (55%), Positives = 98/127 (76%)
Query: 4 LDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRV 63
+D L+NA+ I N+E VG+++ IKPASKLIG VL+VM+ YGYI FE++++ R G + V
Sbjct: 5 VDTLSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIV 64
Query: 64 QLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGG 123
+L G IN GAI+PRF +YE +EKR+LPA +FGILIVST++GVMS K+AR++ +GG
Sbjct: 65 ELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGG 124
Query: 124 RLIAYVY 130
L+AYVY
Sbjct: 125 VLLAYVY 131
>gi|6322271 Ribosomal protein S22A (S24A) (rp50) (YS22); Rps22ap [Saccharomyces
cerevisiae] >gi|133884|sp|P04648|RS22_YEAST 40S
RIBOSOMAL PROTEIN S22 (S24) (YS22) (RP50) (YP58)
>gi|70916|pir||R4BY24 ribosomal protein S15a.e.c10,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|4407|emb|CAA25998.1| (X01962) ribosomal protein S24
[Saccharomyces cerevisiae] >gi|547605|emb|CAA54770.1|
(X77688) ribosomal protein S24 [Saccharomyces
cerevisiae] >gi|1008400|emb|CAA89485.1| (Z49465) ORF
YJL190c [Saccharomyces cerevisiae]
Length = 130
Score = 146 bits (364), Expect = 1e-34
Identities = 69/130 (53%), Positives = 96/130 (73%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
MT LA+AL+ I N+E+ GKR+V I+P+SK+I + L+VMQK+GYIGEFE+IDD R+G
Sbjct: 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
VQL G++NK G I PRF VK D E+W LPA +FG +I++TS G+M H+EAR K
Sbjct: 61 IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+ G+++ +VY
Sbjct: 121 VSGKILGFVY 130
>gi|6323399 Ribosomal protein S22B (S24B) (rp50) (YS22); Rps22bp [Saccharomyces
cerevisiae] >gi|1071974|pir||S51385 ribosomal protein
S15a.e.c12, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|609410|gb|AAB67567.1| (U19103) Rps24bp:
40S ribosomal protein S22 [Saccharomyces cerevisiae]
Length = 130
Score = 145 bits (362), Expect = 2e-34
Identities = 68/130 (52%), Positives = 96/130 (73%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
MT LA+AL+ I N+E+ GKR+V ++P+SK+I + L+VMQK+GYIGEFE+IDD R+G
Sbjct: 1 MTRSSVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
VQL G++NK G I PRF VK D E+W LPA +FG +I++TS G+M H+EAR K
Sbjct: 61 IVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+ G+++ +VY
Sbjct: 121 VSGKILGFVY 130
>emb|CAC12380.1| (AL445067) probable 30S ribosomal protein S8 [Thermoplasma
acidophilum]
Length = 129
Score = 145 bits (362), Expect = 2e-34
Identities = 69/126 (54%), Positives = 96/126 (75%)
Query: 5 DPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQ 64
D L + ++ I N+ R+GKRE+ +PA+KLIG+VL+VMQ Y YI FE ID+ R G +++
Sbjct: 4 DTLNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIV 63
Query: 65 LLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGR 124
L IN G IKPRFPVK + E++E R+LPA +FGILI++T++GVMS+ EAR+ GIGG+
Sbjct: 64 LNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGK 123
Query: 125 LIAYVY 130
L+AYVY
Sbjct: 124 LLAYVY 129
>sp|P33953|RS22_KLUMA 40S RIBOSOMAL PROTEIN S22 (S15A) (YS24) >gi|320167|pir||S30003
ribosomal protein S15a.e - yeast (Kluyveromyces
marxianus) >gi|263484|gb|AAB24900.1| (S53434) S24-1
[Kluyveromyces marxianus]
Length = 130
Score = 145 bits (361), Expect = 3e-34
Identities = 68/130 (52%), Positives = 95/130 (72%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
MT LA+AL+ I N+E+ GKR+V I+P+SK+I + L+VMQK+GYIGEFE+IDD R+G
Sbjct: 1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
VQL G++NK G I PRF VK D E+W LPA +FG +I++TS G+M H+EA K
Sbjct: 61 IVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKH 120
Query: 121 IGGRLIAYVY 130
+ G+++ +VY
Sbjct: 121 VSGKILGFVY 130
>gb|AAK41004.1| SSU ribosomal protein S8AB (rps8AB) [Sulfolobus solfataricus]
Length = 133
Score = 141 bits (352), Expect = 3e-33
Identities = 76/136 (55%), Positives = 94/136 (68%), Gaps = 9/136 (6%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++PLANAL+ I N+E ++ I PASKL+ VLRVMQK GY+GEFE+IDDGR G
Sbjct: 1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKAR------DYERWEKRFLPAFEFGILIVSTSQGVMSHK 114
VQLLG++NK G I PR+P+ R DY R R+LP+ E GI+IVSTS+GVMSHK
Sbjct: 61 ITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVR---RYLPSKEIGIIIVSTSKGVMSHK 117
Query: 115 EAREKGIGGRLIAYVY 130
EA IGG + YVY
Sbjct: 118 EAARLRIGGVALGYVY 133
>sp|Q9UX92|RS8_SULSO 30S RIBOSOMAL PROTEIN S8P >gi|6015773|emb|CAB57600.1| (Y18930)
ribosomal protein S8 (HMAS8) [Sulfolobus solfataricus]
Length = 133
Score = 141 bits (352), Expect = 3e-33
Identities = 76/136 (55%), Positives = 94/136 (68%), Gaps = 9/136 (6%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++PLANAL+ I N+E ++ I PASKL+ VLRVMQK GY+GEFE+IDDGR G
Sbjct: 1 MVFVNPLANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKAR------DYERWEKRFLPAFEFGILIVSTSQGVMSHK 114
VQLLG++NK G I PR+P+ R DY R R+LP+ E GI+IVSTS+GVMSHK
Sbjct: 61 ITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVR---RYLPSKEIGIIIVSTSKGVMSHK 117
Query: 115 EAREKGIGGRLIAYVY 130
EA IGG + YVY
Sbjct: 118 EAARLRIGGVALGYVY 133
>sp|Q9YF89|RS8_AERPE 30S RIBOSOMAL PROTEIN S8P >gi|7440259|pir||G72726 probable
ribosomal protein S8 APE0352 - Aeropyrum pernix (strain
K1) >gi|5103991|dbj|BAA79307.1| (AP000059) 135aa long
hypothetical 30S ribosomal protein S8 [Aeropyrum pernix]
Length = 135
Score = 139 bits (347), Expect = 1e-32
Identities = 70/133 (52%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M +LD LANA++ I N+E GK E I P+SKLI VLR+++K GYIG FE+IDDGR G
Sbjct: 3 MVMLDTLANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGK 62
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWE---KRFLPAFEFGILIVSTSQGVMSHKEAR 117
+RV+LLG+IN G +KPR PV R+ + +++L + + G+LI+ST QGVM+H+EA
Sbjct: 63 FRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREAL 122
Query: 118 EKGIGGRLIAYVY 130
++ IGG +IAYVY
Sbjct: 123 KRKIGGIVIAYVY 135
>gi|11432121 ribosomal protein S15a [Homo sapiens]
>gi|1173220|sp|P39027|RS1A_HUMAN 40S RIBOSOMAL PROTEIN
S15A >gi|627959|pir||JC2234 ribosomal protein S15a,
cytosolic [validated] - rat >gi|495273|emb|CAA54918.1|
(X77953) ribosomal protein S15a [Rattus norvegicus]
Length = 130
Score = 139 bits (346), Expect = 2e-32
Identities = 63/130 (48%), Positives = 91/130 (69%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ GKR+V I+P SK+I L VM K+GYIGEFE IDD RAG
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V+ +D E+W+ LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
GG+++ + +
Sbjct: 121 TGGKILGFFF 130
>gi|4506689 ribosomal protein S15a [Homo sapiens] >gi|1082767|pir||S52339
ribosomal protein S15a, cytosolic - human
>gi|666047|emb|CAA59127.1| (X84407) ribosomal protein
S15a [Homo sapiens]
Length = 130
Score = 138 bits (343), Expect = 4e-32
Identities = 62/130 (47%), Positives = 91/130 (69%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ GKR+V I+P SK+I L +M K+GYIGEFE IDD RAG
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTLMMKHGYIGEFEIIDDHRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V+ +D E+W+ LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
GG+++ + +
Sbjct: 121 TGGKILGFFF 130
>emb|CAB56626.1| (AJ249788) ribosomal protein 22 of the small subunit
[Xanthophyllomyces dendrorhous]
Length = 130
Score = 136 bits (340), Expect = 8e-32
Identities = 63/130 (48%), Positives = 91/130 (69%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L + L++I N+ER GKR+V I+P+SK++ L VMQ++GYIG FE +DD RAG
Sbjct: 1 MVRISVLNDCLNNIVNAERRGKRQVLIRPSSKVVVRFLSVMQQHGYIGAFEIVDDHRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
++L G++NK G I PRF V+ + E W LPA FG++I++TS G+M H+EAR K
Sbjct: 61 IVIELNGRLNKTGVISPRFNVQVDEIESWVNLLLPARSFGLIILTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+L+ YVY
Sbjct: 121 VGGKLLGYVY 130
>dbj|BAA89231.1| (AB018560) wrp15a [Citrullus lanatus]
Length = 130
Score = 136 bits (340), Expect = 8e-32
Identities = 62/130 (47%), Positives = 93/130 (70%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L +AL + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFEF+DD R+G
Sbjct: 1 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEFVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V+L G++NK G I PRF V ++ E W R LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 121 IGGRLIAYVY 130
+GG+++ + Y
Sbjct: 121 VGGKVLGFFY 130
>gb|AAF61072.1|AF220553_1 (AF220553) 40S ribosomal protein S15A [Paralichthys olivaceus]
Length = 130
Score = 136 bits (340), Expect = 8e-32
Identities = 62/130 (47%), Positives = 91/130 (69%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ GKR+V I+P SK+I L VM K+GYIGEFE IDD RAG
Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF ++ +D E+W+ LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVNLTGRLNKCGVISPRFDLQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
GG+++ + +
Sbjct: 121 TGGKILGFFF 130
>sp|O14469|RS22_SCHPO 40S RIBOSOMAL PROTEIN S22 >gi|7489974|pir||T38964 40s ribosomal
protein s15 or s22 - fission yeast (Schizosaccharomyces
pombe) >gi|7489975|pir||T38144 40s ribosomal protein
s15a - fission yeast (Schizosaccharomyces pombe)
>gi|11276561|pir||T43373 40s ribosomal protein s15 or
s22 - fission yeast (Schizosaccharomyces pombe)
>gi|2281972|emb|CAB10850.1| (Z98056) 40s ribosomal
protein s15 or s22 [Schizosaccharomyces pombe]
>gi|2414597|emb|CAB16574.1| (Z99295) 40s ribosomal
protein S15A/S22A [Schizosaccharomyces pombe]
>gi|3219307|dbj|BAA28848.1| (AB015353) ribosomal protein
S22 homolog [Schizosaccharomyces pombe]
Length = 130
Score = 136 bits (338), Expect = 1e-31
Identities = 62/124 (50%), Positives = 92/124 (74%)
Query: 7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLL 66
LA+ L++I N+ER G+R+V I+P+SK+I + L VMQK+GYI EF IDD R+G +QL
Sbjct: 7 LADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLN 66
Query: 67 GKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLI 126
G+INK G I PRF VK +D E+W + LP+ + G+++++TS+G+MSH EAR K GG+++
Sbjct: 67 GRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKIL 126
Query: 127 AYVY 130
+ Y
Sbjct: 127 GFFY 130
>sp|Q00332|RS1A_BRANA 40S RIBOSOMAL PROTEIN S15A (PPCB8) >gi|99825|pir||S20945 ribosomal
protein S15a - rape >gi|17863|emb|CAA42599.1| (X59983)
r-protein BnS15a [Brassica napus]
Length = 130
Score = 135 bits (336), Expect = 2e-31
Identities = 61/130 (46%), Positives = 93/130 (70%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L +AL + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD R+G
Sbjct: 1 MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V+L G++NK G I PRF V ++ E W R LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 121 IGGRLIAYVY 130
+GG+++ + Y
Sbjct: 121 VGGKVLGFFY 130
>sp|P42798|RS1A_ARATH 40S RIBOSOMAL PROTEIN S15A >gi|440824|gb|AAA61608.1| (L27461)
ribosomal protein S15 [Arabidopsis thaliana]
>gi|2150130|gb|AAB58750.1| (AF001412) cytoplasmic
ribosomal protein S15a [Arabidopsis thaliana]
>gi|8439890|gb|AAF75076.1|AC007583_12 (AC007583) Strong
similarity to 40S ribosomal protein S15A from
Arabidopsis thaliana gb|L27461. EST gb|R30315 comes
from this gene. >gi|9757906|dbj|BAB08353.1| (AB015475)
40S ribosomal protein S15A [Arabidopsis thaliana]
Length = 130
Score = 135 bits (336), Expect = 2e-31
Identities = 61/130 (46%), Positives = 93/130 (70%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L +AL + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD R+G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V+L G++NK G I PRF V ++ E W R LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 121 IGGRLIAYVY 130
+GG+++ + Y
Sbjct: 121 VGGKVLGFFY 130
>sp|O05636|RS8_SULAC 30S RIBOSOMAL PROTEIN S8P >gi|2052261|emb|CAA69092.1| (Y07778)
ribosomal protein S8 [Sulfolobus acidocaldarius]
Length = 133
Score = 134 bits (334), Expect = 4e-31
Identities = 70/133 (52%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++PLANAL+ + N+E ++ I PASKLI VLRVMQK GYIGEFE+IDDGRAG
Sbjct: 1 MPSINPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYER---WEKRFLPAFEFGILIVSTSQGVMSHKEAR 117
VQLLG+INK G I PR+P+ R + +++LP+ E GI+I+ST +GVMSH++
Sbjct: 61 IIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGI 120
Query: 118 EKGIGGRLIAYVY 130
+ IGG + YVY
Sbjct: 121 REKIGGVTLGYVY 133
>pir||T49245 cytoplasmic ribosomal protein S15a-like - Arabidopsis thaliana
>gi|7798992|emb|CAB90931.1| (AL355775) cytoplasmic
ribosomal protein S15a-like [Arabidopsis thaliana]
Length = 130
Score = 134 bits (333), Expect = 5e-31
Identities = 60/130 (46%), Positives = 92/130 (70%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L + L + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD R+G
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V+L G++NK G I PRF V ++ E W R LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
Query: 121 IGGRLIAYVY 130
+GG+++ + Y
Sbjct: 121 VGGKVLGFFY 130
>sp|P48149|RS1A_DROME 40S RIBOSOMAL PROTEIN S15A >gi|422493|pir||S33498 ribosomal protein
S15a, cytosolic - fruit fly (Drosophila melanogaster)
>gi|311606|emb|CAA79771.1| (Z21673) ribosomal protein
15a (40S subunit) [Drosophila melanogaster]
>gi|7292864|gb|AAF48256.1| (AE003492) CG2033 gene
product [alt 2] [Drosophila melanogaster]
>gi|7292865|gb|AAF48257.1| (AE003492) CG2033 gene
product [alt 1] [Drosophila melanogaster]
Length = 130
Score = 133 bits (331), Expect = 9e-31
Identities = 60/130 (46%), Positives = 90/130 (69%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ GKR+V ++P SK+I + L VM K+GYIGEFE +DD R+G
Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V D E+W LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+++ + +
Sbjct: 121 LGGKILGFFF 130
>gb|AAB70989.1| (AF025460) contains similarity to Pfam domain PF00410 (S8),
Score=169.7, E-value=1.9e-51, N=1 [Caenorhabditis
elegans]
Length = 130
Score = 132 bits (330), Expect = 1e-30
Identities = 62/130 (47%), Positives = 91/130 (69%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL+ I N+E+ GKR+V I+PASK+I L VM K+GYIGEFE +DD RAG
Sbjct: 1 MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NKA I PR ++ D E++ LP+ +FG LI++TS G+M H+EAR K
Sbjct: 61 IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+++ + +
Sbjct: 121 LGGKILGFFF 130
>emb|CAA42600.1| (X59984) r-protein BnS15a [Brassica napus]
Length = 130
Score = 132 bits (328), Expect = 2e-30
Identities = 59/130 (45%), Positives = 93/130 (71%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L +A+ + N+E+ GKR+V I+P+SK+I + L VMQK+GYIGEFE++DD R+G
Sbjct: 1 MVRISVLNDAVKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V+ G++NK+G I PRF V ++ E W R LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVESNGRLNKSGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120
Query: 121 IGGRLIAYVY 130
+GG+++ + Y
Sbjct: 121 VGGKVLGFFY 130
>sp|P46792|RS22_AGABI 40S RIBOSOMAL PROTEIN S22 (S15A) >gi|895693|emb|CAA55942.1|
(X79405) ribosomal protein S15a [Agaricus bisporus]
>gi|1580937|prf||2116270A ribosomal protein S15a
[Agaricus bisporus]
Length = 130
Score = 131 bits (326), Expect = 3e-30
Identities = 61/130 (46%), Positives = 88/130 (66%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L + L I N+ R GKR+V ++P+SK++ + L VMQ++GYIGEFE IDD R G
Sbjct: 1 MVRISVLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
VQL G++NK G I PRF V+ E+W LP+ GI++++TS G++ H+EAR K
Sbjct: 61 IIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKN 120
Query: 121 IGGRLIAYVY 130
+GG+L+ YVY
Sbjct: 121 VGGKLLGYVY 130
>gb|AAF58746.1| (AE003828) CG12324 gene product [Drosophila melanogaster]
Length = 130
Score = 131 bits (326), Expect = 3e-30
Identities = 59/130 (45%), Positives = 89/130 (68%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ GKR+V ++P SK+I + L VM K+GYIGEFE ++D RAG
Sbjct: 1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF D E+W LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+++ + +
Sbjct: 121 LGGKILGFFF 130
>pir||T00569 ribosomal protein S15a, cytosolic - Arabidopsis thaliana
>gi|3355488|gb|AAC27850.1| (AC004218) 40S ribosomal
protein S15A [Arabidopsis thaliana]
Length = 136
Score = 127 bits (316), Expect = 5e-29
Identities = 54/124 (43%), Positives = 90/124 (72%)
Query: 7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLL 66
L + L ++N+E+ GKR+V I+P+SK+I + L VMQK+GYI EFE++DD R+G V+L
Sbjct: 13 LNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELN 72
Query: 67 GKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLI 126
G++N G I PR+ + ++ E W + LP+ +FG ++++TS G+M H+EAR+K +GG+++
Sbjct: 73 GRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVL 132
Query: 127 AYVY 130
+ Y
Sbjct: 133 GFFY 136
>sp|P33095|RS1A_STRPU 40S RIBOSOMAL PROTEIN S15A (S24) >gi|283751|pir||A43907 ribosomal
protein S15a.e - sea urchin (Strongylocentrotus
purpuratus) >gi|241027|gb|AAB20674.1| (S72597)
SpS24=ribosomal protein S24 [Strongylocentrotus
purpuratus=sea urchins, Peptide, 130 aa]
Length = 130
Score = 126 bits (314), Expect = 9e-29
Identities = 58/130 (44%), Positives = 87/130 (66%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ KR+V I+P SK+ + L VM K+GYIGEFE +DD R G
Sbjct: 1 MVRMNVLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V + E+W LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+++ + +
Sbjct: 121 VGGKILGFFF 130
>pir||JC4713 ribosomal protein S15a.e - sea urchin (Paracentrotus lividus)
Length = 130
Score = 125 bits (311), Expect = 2e-28
Identities = 59/130 (45%), Positives = 86/130 (65%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA AL I N+E+ KR+V I+P SK+ + L VM K+GYIGEFE +DD R G
Sbjct: 1 MVRMNVLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMMKHGYIGEFEVVDDHRGGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V D E+W LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+++ + +
Sbjct: 121 VGGKILGFFF 130
>sp|P50891|RS1A_PARLI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|1166457|emb|CAA64564.1|
(X95268) ribosomal protein S24 [Paracentrotus lividus]
Length = 130
Score = 124 bits (308), Expect = 5e-28
Identities = 59/130 (45%), Positives = 86/130 (65%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA AL I N+E+ KR+V I+P SK+ + L VM K+GYIGEFE +DD R G
Sbjct: 1 MVRMNVLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V D E+W LP+ +FG ++++TS G+M H+EAR K
Sbjct: 61 IIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
+GG+++ + +
Sbjct: 121 VGGKILGFFF 130
>sp|P46793|RS1A_DICDI 40S RIBOSOMAL PROTEIN S15A (S24) >gi|881426|gb|AAA70102.1| (U27539)
40S ribosomal protein S24 [Dictyostelium discoideum]
Length = 130
Score = 123 bits (306), Expect = 8e-28
Identities = 57/130 (43%), Positives = 85/130 (64%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + L + L I N+ER GKR+V ++P+SK+I + L VM K YIGEFE +DD R+G
Sbjct: 1 MVRISVLNDCLYSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
+ L+G+INK G I PRF V + E+W LP+ +FG ++++TS G+M H EA+ +
Sbjct: 61 IVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRH 120
Query: 121 IGGRLIAYVY 130
GG+L+ + Y
Sbjct: 121 TGGKLLGFFY 130
>pir||S22051 ribosomal protein S15a.e - human >gi|36142|emb|CAA44568.1| (X62691)
ribosomal protein homologous to yeast S24 [Homo
sapiens]
Length = 129
Score = 120 bits (299), Expect = 5e-27
Identities = 58/130 (44%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M ++ LA+AL I N+E+ GKR + VL VM K+GYIGEFE IDD RAG
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRRCLLGRLQSH-RPVLTVMMKHGYIGEFEIIDDHRAGK 59
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V L G++NK G I PRF V+ +D E+W+ LP+ +FG ++++TS G+M H+EAR K
Sbjct: 60 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH 119
Query: 121 IGGRLIAYVY 130
GG+++ + +
Sbjct: 120 TGGKILGFFF 129
>gb|AAG19951.1| (AE005077) 30S ribosomal protein S8P; Rps8p [Halobacterium sp.
NRC-1]
Length = 98
Score = 120 bits (299), Expect = 5e-27
Identities = 54/98 (55%), Positives = 74/98 (75%)
Query: 33 LIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKR 92
++G VL V GYI FEF+D+G+AG + V+L G IN+ G + PR+ V A +E+WEKR
Sbjct: 1 MVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKR 60
Query: 93 FLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130
+LPA ++G L+V+TS G+MSH EARE GIGG++IAYVY
Sbjct: 61 YLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 98
>pir||T18510 hypothetical protein C0735w - malaria parasite (Plasmodium
falciparum) >gi|3758866|emb|CAB11151.1| (Z98551) 40S
Ribosomal protein S15A [Plasmodium falciparum]
Length = 130
Score = 116 bits (288), Expect = 1e-25
Identities = 57/130 (43%), Positives = 85/130 (64%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + LA+ L I N+E+ G+R+V I+P+SK++ + L+ MQK GYIG FE +DD R+G
Sbjct: 1 MVRMSVLADCLKTINNAEKRGRRQVLIRPSSKVVIKFLQYMQKKGYIGSFEIVDDHRSGK 60
Query: 61 YRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKG 120
V LLG+INK I PR+ VK + E+ LP+ FG LI++T G+M H+EAR K
Sbjct: 61 IVVNLLGRINKCAVISPRYDVKLDEIEKIITSILPSRLFGHLILTTPYGIMDHEEARRKH 120
Query: 121 IGGRLIAYVY 130
GG+++ + +
Sbjct: 121 TGGKVLGFFF 130
>emb|CAB79701.1| (AL161575) ribosomal protein S15a homolog [Arabidopsis thaliana]
Length = 129
Score = 96.0 bits (235), Expect = 2e-19
Identities = 44/124 (35%), Positives = 78/124 (62%)
Query: 7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLL 66
L +AL I N+ER GK V +KP S ++ LR+M++ GYI F+ D R G V L
Sbjct: 6 LNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQ 65
Query: 67 GKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLI 126
G++N A+ R V+A++ E++ +R LP ++G ++++T G++ H+EA ++ +GG+++
Sbjct: 66 GRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVL 125
Query: 127 AYVY 130
+ Y
Sbjct: 126 GFFY 129
>gb|AAC62143.1| (AC005169) 40S ribosomal protein S15A [Arabidopsis thaliana]
Length = 129
Score = 88.9 bits (217), Expect = 2e-17
Identities = 41/124 (33%), Positives = 76/124 (61%)
Query: 7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLL 66
L +AL I N+E+ GK V +KP S ++ L++M++ GYI F+ D R G V L
Sbjct: 6 LNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQ 65
Query: 67 GKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLI 126
G++N A+ R VKA + ++ +R LP ++G ++++T G++ H+EA ++ +GG+++
Sbjct: 66 GRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVL 125
Query: 127 AYVY 130
+ +
Sbjct: 126 GFFH 129
>sp|P56209|RS8_BACST 30S RIBOSOMAL PROTEIN S8 (BS8)
Length = 131
Score = 81.1 bits (197), Expect = 5e-15
Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 21/140 (15%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + DP+A+ L+ I N+ V ++ + PASK+ E+ ++++ G+I ++E+I+D + G+
Sbjct: 1 MVMTDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGI 59
Query: 61 YRVQL-----------LGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQG 109
R+ L L +I+K G R VKA + R GI I+STSQG
Sbjct: 60 LRIFLKYGPNERVITGLKRISKPGL---RVYVKAHEVPRVLNGL------GIAILSTSQG 110
Query: 110 VMSHKEAREKGIGGRLIAYV 129
V++ KEAR+KG GG +IAYV
Sbjct: 111 VLTDKEARQKGTGGEIIAYV 130
>pdb|1SEI|A Chain A, Structure Of 30s Ribosomal Protein S8
>gi|1942033|pdb|1SEI|B Chain B, Structure Of 30s
Ribosomal Protein S8 >gi|243179|gb|AAB21090.1| ribosomal
protein S8 [Bacillus stearothermophilus, Peptide, 130
aa]
Length = 130
Score = 79.2 bits (192), Expect = 2e-14
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 21/138 (15%)
Query: 3 LLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYR 62
+ DP+A+ L+ I N+ V ++ + PASK+ E+ ++++ G+I ++E+I+D + G+ R
Sbjct: 2 MTDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILR 60
Query: 63 VQL-----------LGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVM 111
+ L L +I+K G R VKA + R GI I+STSQGV+
Sbjct: 61 IFLKYGPNERVITGLKRISKPGL---RVYVKAHEVPRVLNGL------GIAILSTSQGVL 111
Query: 112 SHKEAREKGIGGRLIAYV 129
+ KEAR+KG GG +IAYV
Sbjct: 112 TDKEARQKGTGGEIIAYV 129
>pir||G69699 ribosomal protein S8 - Bacillus subtilis
>gi|1644197|dbj|BAA10980.1| (D64125) ribosomal protein
S8 [Bacillus subtilis] >gi|2632397|emb|CAB11906.1|
(Z99104) ribosomal protein S8 (BS8) [Bacillus subtilis]
Length = 132
Score = 78.8 bits (191), Expect = 2e-14
Identities = 52/137 (37%), Positives = 77/137 (55%), Gaps = 12/137 (8%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + DP+A+ L+ I N+ V ++ I PASKL E+ ++++ G+I + EF++D + G+
Sbjct: 1 MVMTDPIADMLTRIRNANMVRHEKLEI-PASKLKREIPEILKREGFIRDVEFVEDSKQGI 59
Query: 61 YRVQLLGKINKAGAI-------KPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSH 113
RV L N I KP V A+ E R L GI I+STSQGV++
Sbjct: 60 IRVSLKYGQNNERVITGLKRISKPGLRVYAKSNE--VPRVLNGL--GIAIISTSQGVLTD 115
Query: 114 KEAREKGIGGRLIAYVY 130
KEAR K GG ++AYV+
Sbjct: 116 KEARAKQAGGEVLAYVW 132
>sp|P12879|RS8_BACSU 30S RIBOSOMAL PROTEIN S8 (BS8) >gi|1044978|gb|AAB06813.1| (L47971)
ribosomal protein S8 [Bacillus subtilis]
Length = 132
Score = 78.4 bits (190), Expect = 3e-14
Identities = 52/137 (37%), Positives = 77/137 (55%), Gaps = 12/137 (8%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + DP+A+ L+ I N+ V ++ I PASKL E+ ++++ G+I + EF++D + G+
Sbjct: 1 MVMTDPIADMLTRIRNANMVRHEKLEI-PASKLKREIAEILKREGFIRDVEFVEDSKQGI 59
Query: 61 YRVQLLGKINKAGAI-------KPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSH 113
RV L N I KP V A+ E R L GI I+STSQGV++
Sbjct: 60 IRVFLKYGQNNERVITGLKRISKPGLRVYAKSNE--VPRVLNGL--GIAIISTSQGVLTD 115
Query: 114 KEAREKGIGGRLIAYVY 130
KEAR K GG ++AYV+
Sbjct: 116 KEARAKQAGGEVLAYVW 132
>sp|Q9Z9K0|RS8_BACHD 30S RIBOSOMAL PROTEIN S8 >gi|11276562|pir||T44397 ribosomal protein
S8 [imported] - Bacillus halodurans
>gi|4512418|dbj|BAA75285.1| (AB017508) rpsH homologue
(identity of 82% to B. subtilis ) [Bacillus halodurans]
>gi|10172760|dbj|BAB03867.1| (AP001507) ribosomal
protein S8 (BS8) [Bacillus halodurans]
Length = 132
Score = 75.3 bits (182), Expect = 3e-13
Identities = 48/142 (33%), Positives = 81/142 (56%), Gaps = 22/142 (15%)
Query: 1 MTLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGV 60
M + DP+++ L+ I N+ V ++ + PASK+ E+ ++++ G+I ++E+I+D + GV
Sbjct: 1 MVMTDPISDMLTRIRNANTVRHEKLEL-PASKIKKEIAEILKREGFIRDYEYIEDSKQGV 59
Query: 61 YRVQL------------LGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQ 108
R+ L L +I+K G R KA + R GI IVSTS+
Sbjct: 60 IRIFLKYGSSNERVITGLKRISKPGL---RVYAKAGELPR------VLGGLGIAIVSTSK 110
Query: 109 GVMSHKEAREKGIGGRLIAYVY 130
GVM+ KEAR++ +GG ++AYV+
Sbjct: 111 GVMTDKEARQQQVGGEVLAYVW 132
>sp|Q9ZAE5|RS8_THEMA 30S RIBOSOMAL PROTEIN S8 >gi|7440263|pir||F72248 ribosomal protein
S8 - Thermotoga maritima (strain MSB8)
>gi|4982050|gb|AAD36552.1|AE001798_17 (AE001798)
ribosomal protein S8 [Thermotoga maritima]
Length = 134
Score = 75.3 bits (182), Expect = 3e-13
Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 5 DPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQ 64
DP+A+ L+ I N+ V K I PAS L ++ ++++ G+I ++++I+DG+ G+ RV
Sbjct: 4 DPIADMLTRIRNANMVFKEYTDI-PASNLKKKICEILKREGFIADYKYIEDGKQGILRVY 62
Query: 65 LL---GKINKAGAIKPRFPVKARDYERW-EKRFLPAFE--FGILIVSTSQGVMSHKEARE 118
L G+ N+ I V + +K +P + GI I++TS+GV++ KEAR+
Sbjct: 63 LKYKGGRKNRERVIHGIVRVSHAGRRIYVDKDHIPKVKNGLGIAILTTSKGVLTDKEARQ 122
Query: 119 KGIGGRLIAYVY 130
G+GG +IAYV+
Sbjct: 123 LGVGGEVIAYVW 134
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45393975
Number of Sequences: 2977
Number of extensions: 1659869
Number of successful extensions: 3689
Number of sequences better than 1.0e-10: 45
Number of HSP's better than 0.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3639
Number of HSP's gapped (non-prelim): 45
length of query: 130
length of database: 189,106,746
effective HSP length: 51
effective length of query: 79
effective length of database: 158,583,909
effective search space: 12528128811
effective search space used: 12528128811
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)