BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2132 (rpl6P) DE:LSU ribosomal protein L6P (rpl6P)
(184 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75145 lsu ribosomal protein l6p (rpl6p) PAB2132 - Pyrococc... 372 e-102
sp|O59433|RL6_PYRHO 50S RIBOSOMAL PROTEIN L6P >gi|7440685|pir||F... 357 4e-98
sp|P54042|RL6_METJA 50S RIBOSOMAL PROTEIN L6P >gi|2119111|pir||G... 233 8e-61
sp|P14030|RL6_METVA 50S RIBOSOMAL PROTEIN L6P >gi|71110|pir||R5M... 214 5e-55
sp|O26127|RL6_METTH 50S RIBOSOMAL PROTEIN L6P >gi|7440686|pir||E... 197 9e-50
sp|Q9YF91|RL6_AERPE 50S RIBOSOMAL PROTEIN L6P >gi|7440699|pir||E... 194 4e-49
gi|11499493 LSU ribosomal protein L6P (rpl6P) [Archaeoglobus ful... 190 7e-48
sp|O05637|RL6_SULAC 50S RIBOSOMAL PROTEIN L6P >gi|2052262|emb|CA... 186 2e-46
gb|AAK41003.1| LSU ribosomal protein L6AB (rpl6AB) [Sulfolobus s... 185 4e-46
sp|Q9UX91|RL6_SULSO 50S RIBOSOMAL PROTEIN L6P >gi|6015774|emb|CA... 185 4e-46
sp|P14135|RL6_HALMA 50S RIBOSOMAL PROTEIN L6P (HMAL6) (HL10) >gi... 175 2e-43
pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Sub... 175 2e-43
gb|AAG19952.1| (AE005077) 50S ribosomal protein L6P; Rpl6p [Halo... 168 5e-41
emb|CAC12379.1| (AL445067) probable 50S ribosomal protein L6 [Th... 146 2e-34
gi|4506665 ribosomal protein L9 [Homo sapiens] >gi|2136121|pir||... 142 3e-33
gi|11432067 similar to ribosomal protein L9 (H. sapiens) [Homo s... 141 7e-33
gb|AAF70508.1|AF260271_1 (AF260271) 60S ribosomal protein L9 [Mu... 139 3e-32
sp|P17077|RL9_RAT 60S RIBOSOMAL PROTEIN L9 >gi|71108|pir||R5RT9 ... 138 6e-32
sp|O74905|RL9B_SCHPO 60S RIBOSOMAL PROTEIN L9-B >gi|7490051|pir|... 134 5e-31
sp|P51410|RL9_MOUSE 60S RIBOSOMAL PROTEIN L9 >gi|687604|gb|AAA85... 132 3e-30
gb|AAA85685.1| (U17331) ribosomal protein L9, mutant [Mus musculus] 131 8e-30
sp|Q10232|RL9A_SCHPO 60S RIBOSOMAL PROTEIN L9-A >gi|7490050|pir|... 129 2e-29
gb|AAF53049.1| (AE003630) RpL9 gene product [alt 1] [Drosophila ... 126 2e-28
sp|P50882|RL9_DROME 60S RIBOSOMAL PROTEIN L9 >gi|2119112|pir||JC... 125 3e-28
emb|CAA08792.1| (AJ009693) ribosomal protein L9 [Podocoryne carnea] 123 1e-27
pir||T04180 ribosomal protein L9.F7L13.30, cytosolic - Arabidops... 123 2e-27
gb|AAF97345.1|AC021045_2 (AC021045) Putative 60S ribosomal prote... 122 2e-27
sp|P49210|RL9_ORYSA 60S RIBOSOMAL PROTEIN L9 >gi|7440702|pir||T0... 121 5e-27
sp|P30707|RL9_PEA 60S RIBOSOMAL PROTEIN L9 (GIBBERELLIN-REGULATE... 118 6e-26
gi|6324262 Ribosomal protein L9B (L8B) (rp24) (YL11); Rpl9bp [Sa... 118 6e-26
gi|6321291 Ribosomal protein L9A (L8A) (rp24) (YL11); Rpl9ap [Sa... 117 7e-26
emb|CAA65987.2| (X97322) ribosomal protein L9 [Pisum sativum] 115 3e-25
sp|P49209|RL9_ARATH 60S RIBOSOMAL PROTEIN L9 >gi|2129720|pir||S7... 113 1e-24
emb|CAC04009.1| (AL391394) probable ribosomal protein L9 [Leishm... 113 2e-24
gb|AAD26563.1|AF124243_1 (AF124243) ribosomal protein homolog [C... 107 8e-23
gb|AAF53048.1| (AE003630) RpL9 gene product [alt 2] [Drosophila ... 103 2e-21
gb|AAG27917.1|AC027035_16 (AC027035) ribosomal protein L9, 5' pa... 96 3e-19
sp|P33099|RL6_MICLU 50S RIBOSOMAL PROTEIN L6 >gi|322076|pir||S29... 92 3e-18
sp|O02376|RL9_HAECO 60S RIBOSOMAL PROTEIN L9 >gi|2181210|emb|CAA... 90 1e-17
pir||R5BS0F ribosomal protein L6 - Bacillus stearothermophilus >... 86 3e-16
sp|P02391|RL6_BACST 50S RIBOSOMAL PROTEIN L6 (BL10) 86 3e-16
gb|AAA22700.1| (M57622) ribosomal protein L6 [Bacillus stearothe... 86 3e-16
pdb|1EG0|J Chain J, Fitting Of Components With Known Structure I... 86 3e-16
pdb|487D|J Chain J, Seven Ribosomal Proteins Fitted To A Cryo-El... 85 5e-16
sp|Q9ZAE4|RL6_THEMA 50S RIBOSOMAL PROTEIN L6 >gi|7440704|pir||E7... 84 9e-16
emb|CAA79792.1| (Z21677) ribosomal protein L6 [Thermotoga maritima] 82 6e-15
sp|Q9Z9J9|RL6_BACHD 50S RIBOSOMAL PROTEIN L6 >gi|11276711|pir||T... 82 6e-15
sp|Q9ZI38|RL6_AQUPY 50S RIBOSOMAL PROTEIN L6 >gi|4165879|gb|AAD0... 81 8e-15
sp|P95067|RL6_MYCTU 50S RIBOSOMAL PROTEIN L6 >gi|7440689|pir||B7... 78 5e-14
sp|O67565|RL6_AQUAE 50S RIBOSOMAL PROTEIN L6 >gi|7440697|pir||D7... 78 5e-14
emb|CAB82085.1| (AL161803) 50S ribosomal protein L6 [Streptomyce... 77 1e-13
sp|P46786|RL6_STRCO 50S RIBOSOMAL PROTEIN L6 >gi|1076076|pir||S5... 76 3e-13
pir||F83114 50S ribosomal protein L6 PA4248 [imported] - Pseudom... 75 6e-13
sp|O51446|RL6_BORBU 50S RIBOSOMAL PROTEIN L6 >gi|7440696|pir||D7... 75 8e-13
sp|P73306|RL6_SYNY3 50S RIBOSOMAL PROTEIN L6 >gi|7440691|pir||S7... 74 1e-12
sp|O32998|RL6_MYCLE 50S RIBOSOMAL PROTEIN L6 >gi|11276712|pir||T... 73 2e-12
sp|P46898|RL6_BACSU 50S RIBOSOMAL PROTEIN L6 (BL10) >gi|7440688|... 71 9e-12
sp|P24316|RL6_THETH 50S RIBOSOMAL PROTEIN L6 >gi|1514660|emb|CAA... 71 9e-12
sp|P25056|RL6_CHLTR 50S RIBOSOMAL PROTEIN L6 >gi|3328951|gb|AAC6... 71 1e-11
sp|P46181|RL6_BUCAK 50S RIBOSOMAL PROTEIN L6 >gi|632228|pir||JC2... 70 1e-11
sp|O24703|RL6_SYNP6 50S RIBOSOMAL PROTEIN L6 >gi|2446904|dbj|BAA... 70 2e-11
pir||A37315 ribosomal protein L6 - Chlamydia trachomatis >gi|144... 69 3e-11
pir||H82713 50S ribosomal protein L6 XF1167 [imported] - Xylella... 69 3e-11
pir||G82057 ribosomal protein L6 VC2581 [imported] - Vibrio chol... 69 3e-11
sp|Q9XD21|RL6_LEPIN RIBOSOMAL PROTEIN L6 >gi|5163219|gb|AAD40598... 69 4e-11
dbj|BAA97125.1| (AB045221) lectin-like protein LA2-20 [Lactobaci... 69 4e-11
sp|P04448|RL6_MYCCA 50S RIBOSOMAL PROTEIN L6 >gi|71115|pir||R5YM... 68 6e-11
pir||A81664 ribosomal protein L6 TC0801 [imported] - Chlamydia m... 68 6e-11
sp|P44347|RL6_HAEIN 50S RIBOSOMAL PROTEIN L6 >gi|1075257|pir||B6... 68 7e-11
sp|Q50303|RL6_MYCPN 50S RIBOSOMAL PROTEIN L6 >gi|2127652|pir||S6... 68 1e-10
pir||G81232 50S ribosomal protein L6 NMB0157 [imported] - Neisse... 68 1e-10
>pir||H75145 lsu ribosomal protein l6p (rpl6p) PAB2132 - Pyrococcus abyssi
(strain Orsay) >gi|5457757|emb|CAB49247.1| (AJ248284)
LSU ribosomal protein L6P (rpl6P) [Pyrococcus abyssi]
Length = 184
Score = 372 bits (946), Expect = e-102
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP 60
MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP
Sbjct: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP 60
Query: 61 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR
Sbjct: 61 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
Query: 121 RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK
Sbjct: 121 RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
Query: 181 PITF 184
PITF
Sbjct: 181 PITF 184
>sp|O59433|RL6_PYRHO 50S RIBOSOMAL PROTEIN L6P >gi|7440685|pir||F71185 probable
ribosomal protein L6 - Pyrococcus horikoshii
>gi|3258194|dbj|BAA30877.1| (AP000007) 187aa long
hypothetical 50S ribosomal protein L6 [Pyrococcus
horikoshii]
Length = 187
Score = 357 bits (907), Expect = 4e-98
Identities = 176/184 (95%), Positives = 179/184 (96%)
Query: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP 60
MPVDAW+REEIEIPEGVEVSVQ VKVKGPKGEVE++LFWPGVKIFVE GKVVIYKDFP
Sbjct: 4 MPVDAWIREEIEIPEGVEVSVQDYNVKVKGPKGEVEKKLFWPGVKIFVEDGKVVIYKDFP 63
Query: 61 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR
Sbjct: 64 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 123
Query: 121 RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
RAKILPGVTVKVKGQEIIVEGIDKEA GQTAANIEQATRITKWDRRVFQDGIYIVEKAGK
Sbjct: 124 RAKILPGVTVKVKGQEIIVEGIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 183
Query: 181 PITF 184
PITF
Sbjct: 184 PITF 187
>sp|P54042|RL6_METJA 50S RIBOSOMAL PROTEIN L6P >gi|2119111|pir||G64358 ribosomal protein
L6 - Methanococcus jannaschii >gi|1591173|gb|AAB98460.1|
(U67497) LSU ribosomal protein L6P (rplF) [Methanococcus
jannaschii]
Length = 182
Score = 233 bits (589), Expect = 8e-61
Identities = 116/182 (63%), Positives = 142/182 (77%)
Query: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP 60
MPV A++ E ++IPE V+V + N V VK E+ R P + I EG ++VI+ ++P
Sbjct: 1 MPVAAYIEERVKIPENVQVEINNNEVVVKSGGKELRRRFEHPKIVIKKEGDEIVIFCEYP 60
Query: 61 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
RRKD A+V T +AHINNMIKGVTEGFTYKLK+ Y+HFP+ V V+G+EVIIENFLGEK PR
Sbjct: 61 RRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIENFLGEKHPR 120
Query: 121 RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
RA+I+ GVTVK+ G+++IV GIDKE VGQTAANIEQATRI D RVFQDGIYIVEKAGK
Sbjct: 121 RARIMEGVTVKISGEDVIVTGIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKAGK 180
Query: 181 PI 182
I
Sbjct: 181 AI 182
>sp|P14030|RL6_METVA 50S RIBOSOMAL PROTEIN L6P >gi|71110|pir||R5MX6 ribosomal protein L6
- Methanococcus vannielii >gi|44764|emb|CAA34696.1|
(X16720) rpL6 (AA 1-182) [Methanococcus vannielii]
Length = 182
Score = 214 bits (540), Expect = 5e-55
Identities = 106/180 (58%), Positives = 136/180 (74%)
Query: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP 60
MPV A +REEIEIP V V V G+ V VK ++REL +PG++I +E KVV+ FP
Sbjct: 1 MPVAALIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENEKVVVESTFP 60
Query: 61 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
++ A+V T+++HI NMIKGV+EGF YKL + Y+HFP+ V +G+ VII+NFLGEK PR
Sbjct: 61 KKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIIDNFLGEKYPR 120
Query: 121 RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
AK++ GVTVKV G+E+IV G +KE VGQTAANIEQAT++ D R+FQDGIYIVEKAGK
Sbjct: 121 TAKVMEGVTVKVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKAGK 180
>sp|O26127|RL6_METTH 50S RIBOSOMAL PROTEIN L6P >gi|7440686|pir||E69120 ribosomal protein
L6 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621047|gb|AAB84520.1| (AE000795) ribosomal
protein L9 (E.coli L6) [Methanobacterium
thermoautotrophicum]
Length = 177
Score = 197 bits (495), Expect = 9e-50
Identities = 98/177 (55%), Positives = 132/177 (74%), Gaps = 1/177 (0%)
Query: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFP 60
M + A +REEI IP+GV+V++ G V VKGPK E+ R+ + + VE KVV+ FP
Sbjct: 1 MVLAALIREEIPIPDGVDVTIDGG-VTVKGPKWELSRKFNHSEISMAVEDDKVVLEVKFP 59
Query: 61 RRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
++KD A++ T +AHI+NMI GVTEGF Y++K+VY+HFP++VKV GD+V+IENFLGE+ PR
Sbjct: 60 KKKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIENFLGERHPR 119
Query: 121 RAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
A+ + V+VKG E+ + GI+KE VGQT ANIEQAT+I D RVFQDGIY+V K
Sbjct: 120 TARFVGDTKVQVKGDEVEITGINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176
>sp|Q9YF91|RL6_AERPE 50S RIBOSOMAL PROTEIN L6P >gi|7440699|pir||E72726 probable
ribosomal protein L6 APE0350 - Aeropyrum pernix (strain
K1) >gi|5103989|dbj|BAA79305.1| (AP000059) 182aa long
hypothetical 50S ribosomal protein L6 [Aeropyrum pernix]
Length = 182
Score = 194 bits (489), Expect = 4e-49
Identities = 102/178 (57%), Positives = 123/178 (68%), Gaps = 1/178 (0%)
Query: 1 MPVDAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWP-GVKIFVEGGKVVIYKDF 59
M D V E +E+PEGV VS+ G VKV GPKGEVER+ GV I +E VV+ F
Sbjct: 1 MAKDVHVVERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNSVVVESFF 60
Query: 60 PRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAP 119
+ + A+V HI NMIKGV GF YKLK++YSHFPI VKV+GD+ II NFLGEK
Sbjct: 61 AKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKVEGDKFIISNFLGEKGL 120
Query: 120 RRAKILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
R A+I+PGV V+VKG ++IVEGID E V QTAANIE AT++ DRR F DGIYI E+
Sbjct: 121 RIARIMPGVKVQVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYER 178
>gi|11499493 LSU ribosomal protein L6P (rpl6P) [Archaeoglobus fulgidus]
>gi|3914764|sp|O28370|RL6_ARCFU 50S RIBOSOMAL PROTEIN
L6P >gi|7440687|pir||D69488 LSU ribosomal protein L6P
(rpl6P) homolog - Archaeoglobus fulgidus
>gi|2648648|gb|AAB89355.1| (AE000971) LSU ribosomal
protein L6P (rpl6P) [Archaeoglobus fulgidus]
Length = 196
Score = 190 bits (479), Expect = 7e-48
Identities = 98/172 (56%), Positives = 126/172 (72%), Gaps = 5/172 (2%)
Query: 11 IEIPEGVEVSVQGN-----TVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDV 65
+E+PE V+++++G+ T+K GPKGE R L + GV I V GKV +Y P++K
Sbjct: 24 VEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFIEVGDGKVRVYTTSPKKKHK 83
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKIL 125
A+V TF HI N+I GV EGF Y LKVVY+HFPI V+V+G+EVIIENF+GEK PRRAKI+
Sbjct: 84 AMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIENFIGEKHPRRAKIV 143
Query: 126 PGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
V++ GQ+I V GID E GQTAAN+EQAT+I + D RVFQDGIYIV+K
Sbjct: 144 GRAQVEISGQDIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
>sp|O05637|RL6_SULAC 50S RIBOSOMAL PROTEIN L6P >gi|2052262|emb|CAA69093.1| (Y07778)
ribosomal protein L6 [Sulfolobus acidocaldarius]
Length = 189
Score = 186 bits (467), Expect = 2e-46
Identities = 92/174 (52%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
Query: 5 AWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWP-GVKIFVEGGKVVIYKDFPRRK 63
A++REEI+IP+ V+VS++ N +KVKGPKGEV ++ + G++I + GK+++ F R+
Sbjct: 7 AYIREEIQIPDKVKVSLENNVLKVKGPKGEVIKDFSYAKGIRIQLNEGKIILETTFADRR 66
Query: 64 DVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAK 123
A++ + AHI NMI G G+ Y LKV+ +HFPI+VKV GDEV + N +GEK RRAK
Sbjct: 67 KKALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDEVQVSNLIGEKNIRRAK 126
Query: 124 ILPGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
ILPGV V VKG++I+VEG D V QTAANIE +T+I +DRR+F DGIYI +K
Sbjct: 127 ILPGVKVTVKGEDIVVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKK 180
>gb|AAK41003.1| LSU ribosomal protein L6AB (rpl6AB) [Sulfolobus solfataricus]
Length = 181
Score = 185 bits (464), Expect = 4e-46
Identities = 90/172 (52%), Positives = 129/172 (74%), Gaps = 1/172 (0%)
Query: 7 VREEIEIPEGVEVSVQGNTVKVKGPKGEVEREL-FWPGVKIFVEGGKVVIYKDFPRRKDV 65
+REEIEIP+ V V ++G+ +K+KGPKGEV ++ F G++I ++G K+V+ F R+
Sbjct: 6 LREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFANRRKK 65
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKIL 125
A+ + +HI NMI GVT+G+ Y LK++Y+HFP +VKV G+EV I N +GEK RRA+IL
Sbjct: 66 AVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTRRAQIL 125
Query: 126 PGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
GV V VKG++I+VEG + EAV QTAANIE A++I+ +DRR+F DGI+I +K
Sbjct: 126 EGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKK 177
>sp|Q9UX91|RL6_SULSO 50S RIBOSOMAL PROTEIN L6P >gi|6015774|emb|CAB57601.1| (Y18930)
ribosomal protein L6 (HMAL6) [Sulfolobus solfataricus]
Length = 181
Score = 185 bits (464), Expect = 4e-46
Identities = 90/172 (52%), Positives = 129/172 (74%), Gaps = 1/172 (0%)
Query: 7 VREEIEIPEGVEVSVQGNTVKVKGPKGEVEREL-FWPGVKIFVEGGKVVIYKDFPRRKDV 65
+REEIEIP+ V V ++G+ +K+KGPKGEV ++ F G++I ++G K+V+ F R+
Sbjct: 6 LREEIEIPKNVVVDLKGSIIKIKGPKGEVVKDFSFAKGIQISLDGNKIVLETTFANRRKK 65
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKIL 125
A+ + +HI NMI GVT+G+ Y LK++Y+HFP +VKV G+EV I N +GEK RRA+IL
Sbjct: 66 AVFYSIVSHIKNMITGVTKGYRYYLKIIYTHFPTSVKVVGNEVQITNLIGEKNTRRAQIL 125
Query: 126 PGVTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
GV V VKG++I+VEG + EAV QTAANIE A++I+ +DRR+F DGI+I +K
Sbjct: 126 EGVKVTVKGEDIVVEGPNLEAVAQTAANIESASKISGFDRRIFSDGIFIYKK 177
>sp|P14135|RL6_HALMA 50S RIBOSOMAL PROTEIN L6P (HMAL6) (HL10) >gi|71111|pir||R5HS6L
ribosomal protein L6 [validated] - Haloarcula
marismortui >gi|48864|emb|CAA41287.1| (X58395) ribosomal
protein [Haloarcula marismortui]
>gi|228187|prf||1718307D ribosomal protein L6
[Haloarcula marismortui]
Length = 178
Score = 175 bits (440), Expect = 2e-43
Identities = 88/173 (50%), Positives = 115/173 (65%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
R E+EIPE V+ + V+G G V R L++P + + V+G VVI D K ++
Sbjct: 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMST 62
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
+ TF++HI NM GVTEG+ Y ++V YSHFP+ V V+GDEV+IENFLGEKAPRR I
Sbjct: 63 IGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGD 122
Query: 128 VTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
V++ G+E+ V G D EAVGQTAA+IEQ TRI D RVFQDG+YI K +
Sbjct: 123 TDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKPNR 175
>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 177
Score = 175 bits (440), Expect = 2e-43
Identities = 88/173 (50%), Positives = 115/173 (65%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
R E+EIPE V+ + V+G G V R L++P + + V+G VVI D K ++
Sbjct: 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMST 61
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
+ TF++HI NM GVTEG+ Y ++V YSHFP+ V V+GDEV+IENFLGEKAPRR I
Sbjct: 62 IGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGD 121
Query: 128 VTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
V++ G+E+ V G D EAVGQTAA+IEQ TRI D RVFQDG+YI K +
Sbjct: 122 TDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKPNR 174
>gb|AAG19952.1| (AE005077) 50S ribosomal protein L6P; Rpl6p [Halobacterium sp.
NRC-1]
Length = 178
Score = 168 bits (420), Expect = 5e-41
Identities = 87/173 (50%), Positives = 115/173 (66%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
R EIEIP+ V V + V+GP+G V R L++P V + VE VV+ + K +
Sbjct: 3 RVEIEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDAVVVASEVDDAKTDST 62
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
V TF++H+ NM GV+EG+ YKL+V YSHFP+ V V+G+EV+I+NFLGEKA RR +I
Sbjct: 63 VGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDVEGEEVVIQNFLGEKAARRTQIRGD 122
Query: 128 VTVKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
V V +E+ + G E VGQTAA+IEQ TR+T D RVFQDG+YIVEK K
Sbjct: 123 TDVVVDDEEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEKPAK 175
>emb|CAC12379.1| (AL445067) probable 50S ribosomal protein L6 [Thermoplasma
acidophilum]
Length = 178
Score = 146 bits (365), Expect = 2e-34
Identities = 74/167 (44%), Positives = 107/167 (63%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRT 70
I+IP+G +VS+ G TV + + + VK+ +G + I IV T
Sbjct: 10 IKIPDGFKVSISGTTVTISYGGKTISKNFANNYVKLVEDGSTIKINASKNNSMVRGIVGT 69
Query: 71 FKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTV 130
+ + INNMIKG+ +GF Y++K+ YSHFP+ V V+G V+IENF GE++PR A+I+ TV
Sbjct: 70 WASEINNMIKGLKDGFQYEMKIDYSHFPMRVSVKGKTVVIENFFGERSPRTAEIVGDTTV 129
Query: 131 KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
VKG + + GI K+ VG+TAANIE++T I +D RVFQDGIY++ K
Sbjct: 130 TVKGDRVYIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176
>gi|4506665 ribosomal protein L9 [Homo sapiens] >gi|2136121|pir||S65792
ribosomal protein L9, cytosolic - human
>gi|607793|gb|AAB01041.1| (U09954) ribosomal protein L9
[Homo sapiens] >gi|1323733|gb|AAB01040.1| (U09953)
ribosomal protein L9 [Homo sapiens]
Length = 192
Score = 142 bits (354), Expect = 3e-33
Identities = 81/177 (45%), Positives = 114/177 (63%), Gaps = 8/177 (4%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK---VVIYKDFPRRKDV 65
+ +EIPE V+++++G TV VKGP+G + R+ V++ + G K + + K + RK++
Sbjct: 8 QTVEIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL 67
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPRRAK 123
A VRT +H+ NMIKGVT GF YK++ VY+HFPI V +Q G V I NFLGEK RR +
Sbjct: 68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVR 127
Query: 124 ILPGVTVKV---KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+ PGV V + E+I+EG D E V +AA I+QAT + D R F DGIY+ EK
Sbjct: 128 MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEK 184
>gi|11432067 similar to ribosomal protein L9 (H. sapiens) [Homo sapiens]
>gi|11435912|ref|XP_003426.1| ribosomal protein L9 [Homo
sapiens] >gi|417677|sp|P32969|RL9_HUMAN 60S RIBOSOMAL
PROTEIN L9 >gi|631365|pir||S42106 ribosomal protein L9
homolog - human >gi|414347|dbj|BAA03401.1| (D14531)
'human homologue of rat ribosomal protein L9' [Homo
sapiens] >gi|710366|gb|AAA63752.1| (U21138) ribosomal
protein L9 [Homo sapiens]
Length = 192
Score = 141 bits (351), Expect = 7e-33
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 8/177 (4%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK---VVIYKDFPRRKDV 65
+ ++IPE V+++++G TV VKGP+G + R+ V++ + G K + + K + RK++
Sbjct: 8 QTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL 67
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPRRAK 123
A VRT +H+ NMIKGVT GF YK++ VY+HFPI V +Q G V I NFLGEK RR +
Sbjct: 68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVR 127
Query: 124 ILPGVTVKV---KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+ PGV V + E+I+EG D E V +AA I+QAT + D R F DGIY+ EK
Sbjct: 128 MRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEK 184
>gb|AAF70508.1|AF260271_1 (AF260271) 60S ribosomal protein L9 [Mus musculus]
Length = 192
Score = 139 bits (346), Expect = 3e-32
Identities = 80/177 (45%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK---VVIYKDFPRRKDV 65
+ ++IPE VE++++G TV VKGP+G + R+ V++ + G K + + K + RK++
Sbjct: 8 QTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL 67
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPRRAK 123
A VRT +H+ NMIKGVT GF YK++ VY+HFPI V +Q G V I NFLGEK RR +
Sbjct: 68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVR 127
Query: 124 ILPGVTVKV---KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+ GV V + E+I+EG D E V +AA I+QAT + D R F DGIY+ EK
Sbjct: 128 MRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEK 184
>sp|P17077|RL9_RAT 60S RIBOSOMAL PROTEIN L9 >gi|71108|pir||R5RT9 ribosomal protein L9,
cytosolic [validated] - rat >gi|57706|emb|CAA36002.1|
(X51706) ribosomal protein L9 (AA 1-192) [Rattus rattus]
Length = 192
Score = 138 bits (343), Expect = 6e-32
Identities = 79/177 (44%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK---VVIYKDFPRRKDV 65
+ ++IPE V+++++G TV VKGP+G + R+ V++ + G K + + K + RK++
Sbjct: 8 QTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKEL 67
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPRRAK 123
A VRT +H+ NMIKGVT GF YK++ VY+HFPI V +Q G V I NFLGEK RR +
Sbjct: 68 ATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVR 127
Query: 124 ILPGVTVKV---KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+ GV V + E+I+EG D E V +AA I+QAT + D R F DGIY+ EK
Sbjct: 128 MRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEK 184
>sp|O74905|RL9B_SCHPO 60S RIBOSOMAL PROTEIN L9-B >gi|7490051|pir||T41472 60s ribosomal
protein l9 - fission yeast (Schizosaccharomyces pombe)
>gi|3647334|emb|CAA21058.1| (AL031644) 60s ribosomal
protein l9 [Schizosaccharomyces pombe]
Length = 189
Score = 134 bits (335), Expect = 5e-31
Identities = 76/179 (42%), Positives = 106/179 (58%), Gaps = 5/179 (2%)
Query: 4 DAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRK 63
D + E + IPEGV V ++ V VKGP+G +++ L +++ +G + RK
Sbjct: 4 DIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNTIKFIVWHGSRK 63
Query: 64 DVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPRR 121
A +RT + INNMI GVT+GF YK+++VY+HFPI + + G V I NFLGE+ R
Sbjct: 64 HNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRV 123
Query: 122 AKILPGVTVKVKG---QEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
K LPGVTV + EII+EG E V Q+AANI+Q + D R F DGIY+ E+
Sbjct: 124 IKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182
>sp|P51410|RL9_MOUSE 60S RIBOSOMAL PROTEIN L9 >gi|687604|gb|AAA85686.1| (U17332)
ribosomal protein L9 [Mus musculus]
Length = 172
Score = 132 bits (329), Expect = 3e-30
Identities = 78/171 (45%), Positives = 108/171 (62%), Gaps = 8/171 (4%)
Query: 15 EGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK---VVIYKDFPRRKDVAIVRTF 71
E VE++++G TV VKGP+G + R+ V++ + G K + + K + RK++A VRT
Sbjct: 1 ENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTI 60
Query: 72 KAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPRRAKILPGVT 129
+H+ NMIKGVT GF YK++ VY+HFPI V +Q G V I NFLGEK RR ++ GV
Sbjct: 61 CSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVA 120
Query: 130 VKV---KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
V + E+I+EG D E V +AA I+QAT + D R F DGIY+ EK
Sbjct: 121 CSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEK 171
>gb|AAA85685.1| (U17331) ribosomal protein L9, mutant [Mus musculus]
Length = 172
Score = 131 bits (325), Expect = 8e-30
Identities = 78/171 (45%), Positives = 107/171 (61%), Gaps = 8/171 (4%)
Query: 15 EGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK---VVIYKDFPRRKDVAIVRTF 71
E VE++++G TV VKGP+G + R+ V++ G K + + K + RK++A VRT
Sbjct: 1 ENVEITLKGRTVIVKGPRGTLRRDFNHINVELSHLGKKKKRLRVDKWWGNRKELATVRTI 60
Query: 72 KAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPRRAKILPGVT 129
+H+ NMIKGVT GF YK++ VY+HFPI V +Q G V I NFLGEK RR ++ GV
Sbjct: 61 CSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVA 120
Query: 130 VKV---KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
V + E+I+EG D E V +AA I+QAT + D R F DGIY+ EK
Sbjct: 121 CSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEK 171
>sp|Q10232|RL9A_SCHPO 60S RIBOSOMAL PROTEIN L9-A >gi|7490050|pir||T38875 60S ribosomal
protein L9 - fission yeast (Schizosaccharomyces pombe)
>gi|1204216|emb|CAA93566.1| (Z69727) 60s ribosomal
protein l9-a. [Schizosaccharomyces pombe]
Length = 190
Score = 129 bits (321), Expect = 2e-29
Identities = 73/179 (40%), Positives = 105/179 (57%), Gaps = 5/179 (2%)
Query: 4 DAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRK 63
D + E + IP+GV V ++ V V GP+G +++ L +++ +G + RK
Sbjct: 4 DIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNTIKFIVWHGSRK 63
Query: 64 DVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPRR 121
A +R+ + INNMI GVT+GF YK+++VY+HFPI + + G V I NFLGE+ R
Sbjct: 64 HNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRV 123
Query: 122 AKILPGVTVKVKG---QEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
K LPGVTV + EII+EG E V Q+AANI+Q + D R F DGIY+ E+
Sbjct: 124 IKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182
>gb|AAF53049.1| (AE003630) RpL9 gene product [alt 1] [Drosophila melanogaster]
Length = 190
Score = 126 bits (313), Expect = 2e-28
Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVV-IYKDFPRRKDVAIVR 69
++IP+ ++ SV+ V + G +G ++R + +++ + + + K F +K++A VR
Sbjct: 10 VKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVR 69
Query: 70 TFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPG 127
T +HI NMIKGVT GF YK++ VY+HFPI + +IE NFLGEK RR ++ PG
Sbjct: 70 TVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPG 129
Query: 128 VTV---KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
VTV + E+IVEG D E+V +AA I+Q+T + D R F DG+Y+ EK
Sbjct: 130 VTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEK 182
>sp|P50882|RL9_DROME 60S RIBOSOMAL PROTEIN L9 >gi|2119112|pir||JC6062 ribosomal protein
L9 - fruit fly (Drosophila melanogaster)
>gi|1208910|emb|CAA64319.1| (X94613) ribosomal protein
L9 [Drosophila melanogaster]
Length = 190
Score = 125 bits (312), Expect = 3e-28
Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVV-IYKDFPRRKDVAIVR 69
++IP+ ++ SV+ V + G +G ++R + +++ + + + K F +K++A VR
Sbjct: 10 VKIPKDIKASVKARVVTITGTRGTLKRTFKHLALDMYMPDKRTLKVEKWFGTKKELAAVR 69
Query: 70 TFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPG 127
T +HI NMIKGVT GF YK++ VY+HFPI + +IE NFLGEK RR ++ PG
Sbjct: 70 TVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPG 129
Query: 128 VTV---KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
VTV + E+IVEG D E+V +AA I+Q+T + D R F DG+Y+ EK
Sbjct: 130 VTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEK 182
>emb|CAA08792.1| (AJ009693) ribosomal protein L9 [Podocoryne carnea]
Length = 184
Score = 123 bits (306), Expect = 1e-27
Identities = 73/174 (41%), Positives = 99/174 (55%), Gaps = 5/174 (2%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIF-VEGGKVVIYKDFPRRKDVAI 67
+ + IPEGV V + G ++ VKGP+G + + +++ V + + F RK +A
Sbjct: 3 QTVTIPEGVSVKMDGRSITVKGPRGSLHKSFHHLNLELTRVNKNTIRVDVWFALRKHLAC 62
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEKAPRRAKIL 125
+RT +HI NMIKGV GF YK++ VY+HFPI + + G V + N+LGEK R K+
Sbjct: 63 LRTICSHIENMIKGVQFGFLYKMRSVYAHFPINLNIMDDGKTVEVRNYLGEKYIRVVKMR 122
Query: 126 PGVTVKVKG--QEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
GV K G EIIVEG D E V +AA I Q R D R F DGIY+ EK
Sbjct: 123 NGVICKPSGNKDEIIVEGNDIELVSNSAALINQCVRAKNKDIRKFLDGIYVSEK 176
>pir||T04180 ribosomal protein L9.F7L13.30, cytosolic - Arabidopsis thaliana
>gi|4539405|emb|CAB40038.1| (AL049524) putative
ribosomal protein L9, cytosolic [Arabidopsis thaliana]
>gi|7267742|emb|CAB78168.1| (AL161517) putative
ribosomal protein L9, cytosolic [Arabidopsis thaliana]
Length = 194
Score = 123 bits (305), Expect = 2e-27
Identities = 74/181 (40%), Positives = 110/181 (59%), Gaps = 13/181 (7%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERE-----LFWPGVKIFVEGGKVV-IYKDFPRR 62
E ++IP+GV + V ++V+GP+G++ R+ L + +K V G + + I F R
Sbjct: 8 ETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSR 67
Query: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPR 120
K A +RT +H++N+I GVT+GF Y+++ VY+HFPI + G+ IE NFLGEK R
Sbjct: 68 KTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVR 127
Query: 121 RAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
+ ++L GV + KVK EII+EG D E V ++ A I Q + K D R F DGIY+ E
Sbjct: 128 KVEMLDGVKIVRSEKVK-DEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSE 186
Query: 177 K 177
K
Sbjct: 187 K 187
>gb|AAF97345.1|AC021045_2 (AC021045) Putative 60S ribosomal protein L9 [Arabidopsis thaliana]
>gi|9665164|gb|AAF97348.1|AC021045_5 (AC021045) Putative
60S ribosomal protein L9 [Arabidopsis thaliana]
Length = 194
Score = 122 bits (304), Expect = 2e-27
Identities = 72/182 (39%), Positives = 108/182 (58%), Gaps = 13/182 (7%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
E ++IP+ V + V ++V+GP+G++ R+ + + E GK + D F R
Sbjct: 8 ETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTR 67
Query: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGD--EVIIENFLGEKAPR 120
K A +RT +H++N+I GVT GF YK++ VY+HFPI + GD + I NFLGEK R
Sbjct: 68 KTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVR 127
Query: 121 RAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVE 176
+ ++L GVT+ KVK EI+++G D E V ++ A I Q + K D R F DGIY+ E
Sbjct: 128 KVEMLDGVTIVRSEKVK-DEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSE 186
Query: 177 KA 178
K+
Sbjct: 187 KS 188
>sp|P49210|RL9_ORYSA 60S RIBOSOMAL PROTEIN L9 >gi|7440702|pir||T03761 probable ribosomal
protein L9 - rice >gi|2058273|dbj|BAA19798.1| (D83527)
YK426 [Oryza sativa]
Length = 190
Score = 121 bits (301), Expect = 5e-27
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 9/177 (5%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKI-FVEGG-KVVIYKDFPRRKDVA 66
E +EIPEG+ V V V V+GP+G++ R + +EGG K+ + F R+ +A
Sbjct: 8 ETMEIPEGLTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMA 67
Query: 67 IVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKI 124
+RT +H+ N+I GVT+G+ YK++ VY+HFPI + IE NFLGEK R+ +
Sbjct: 68 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 127
Query: 125 LPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
L GVT+ KVK E++++G D E V ++AA I Q + D R F DGIY+ +K
Sbjct: 128 LEGVTILRSEKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDK 183
>sp|P30707|RL9_PEA 60S RIBOSOMAL PROTEIN L9 (GIBBERELLIN-REGULATED PROTEIN GA)
>gi|100065|pir||S19978 ribosomal protein L9, cytosolic -
garden pea >gi|20727|emb|CAA46273.1| (X65155) GA [Pisum
sativum]
Length = 193
Score = 118 bits (292), Expect = 6e-26
Identities = 71/180 (39%), Positives = 104/180 (57%), Gaps = 12/180 (6%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVK---IFVEGGKVVIYKD--FPRRK 63
E + IP+GV + V ++V+GP+G++ R+ + I E GK + D F RK
Sbjct: 8 ETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKIDAWFGSRK 67
Query: 64 DVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRR 121
A +RT +H+ N+I GVT+GF YK++ VY+ FPI + D IE NFLGEK R+
Sbjct: 68 TSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRK 127
Query: 122 AKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+L GV++ KVK E++++G D E V ++ A I Q + K D R F DGIY+ EK
Sbjct: 128 VDLLDGVSIIRSEKVK-DEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK 186
>gi|6324262 Ribosomal protein L9B (L8B) (rp24) (YL11); Rpl9bp [Saccharomyces
cerevisiae] >gi|1710580|sp|P51401|RL9B_YEAST 60S
RIBOSOMAL PROTEIN L9-B (L8) (YL11) (RP25)
>gi|1078363|pir||S53915 ribosomal protein L9.e.B,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|791121|emb|CAA60195.1| (X86470) putative second copy
of ribosomal protein gene YL9A, SWISS_PROT:RL9_YEAST
[Saccharomyces cerevisiae] >gi|994820|gb|AAA99644.1|
(U12141) ribosomal protein YL9 [Saccharomyces
cerevisiae] >gi|1301947|emb|CAA95940.1| (Z71343) ORF
YNL067w [Saccharomyces cerevisiae]
Length = 191
Score = 118 bits (292), Expect = 6e-26
Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGV---KIFVEGGKVVIYKDFPRRKDV 65
++IEIPEGV VS++ VKV GP+G + + L V K+ + KV ++ RK V
Sbjct: 8 QQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG--DRKHV 65
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDE----VIIENFLGEKAPRR 121
A +RT K+ ++NMI GVT+G+ YK++ VY+HFPI V + + + + NFLG+K R
Sbjct: 66 AALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRN 125
Query: 122 AKILPGVTVKVK---GQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+ GVT++ EI++ G E V Q AA+++Q R+ D R F DGIY+ K
Sbjct: 126 VPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHK 184
>gi|6321291 Ribosomal protein L9A (L8A) (rp24) (YL11); Rpl9ap [Saccharomyces
cerevisiae] >gi|133036|sp|P05738|RL9A_YEAST 60S
RIBOSOMAL PROTEIN L9-A (L8) (YL11) (RP25)
>gi|71109|pir||R5BYL9 ribosomal protein L9.e.A,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|3388|emb|CAA42746.1| (X60190) ribosomal protein L9
[Saccharomyces cerevisiae] >gi|238112|gb|AAA05579.1|
ribosomal protein L9 homolog, YL9A protein
[Saccharomyces cerevisiae, Peptide, 191 aa]
>gi|1322730|emb|CAA96859.1| (Z72669) ORF YGL147c
[Saccharomyces cerevisiae] >gi|1498237|emb|CAA68215.1|
(X99960) YGL147c [Saccharomyces cerevisiae]
Length = 191
Score = 117 bits (291), Expect = 7e-26
Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGV---KIFVEGGKVVIYKDFPRRKDV 65
++IE+PEGV VS++ VKV GP+G + + L V K+ + KV ++ RK V
Sbjct: 8 QQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG--GRKHV 65
Query: 66 AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDE----VIIENFLGEKAPRR 121
A +RT K+ ++NMI GVT+G+ YK++ VY+HFPI V + + + + NFLG+K R
Sbjct: 66 AALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRN 125
Query: 122 AKILPGVTVKVK---GQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
+ GVT++ EI++ G E V Q AA+++Q R+ D R F DGIY+ K
Sbjct: 126 VPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHK 184
>emb|CAA65987.2| (X97322) ribosomal protein L9 [Pisum sativum]
Length = 195
Score = 115 bits (286), Expect = 3e-25
Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 14/182 (7%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVK---IFVEGGKVVIYKD--FPRRK 63
E + IP+GV + V ++V+GP+G++ R+ + I E GK + D F RK
Sbjct: 8 ETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKIDAWFGSRK 67
Query: 64 DVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRR 121
A +RT +H+ N+I GVT+GF YK++ VY+ FPI + D IE NFLGEK R+
Sbjct: 68 TSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRK 127
Query: 122 AKILPGVTV----KVKGQEIIVEGIDKEAVGQTAA--NIEQATRITKWDRRVFQDGIYIV 175
+L GV++ KVK E++++G D E V ++ A N EQ + K D R F DGIY+
Sbjct: 128 VDLLDGVSIIRSEKVK-DEVVLDGNDIELVSRSCALINQEQKCHVKKKDIRKFLDGIYVS 186
Query: 176 EK 177
EK
Sbjct: 187 EK 188
>sp|P49209|RL9_ARATH 60S RIBOSOMAL PROTEIN L9 >gi|2129720|pir||S71255 ribosomal protein
L9, cytosolic - Arabidopsis thaliana
>gi|1107489|emb|CAA63024.1| (X91958) 60S ribosomal
protein L9 [Arabidopsis thaliana]
Length = 195
Score = 113 bits (281), Expect = 1e-24
Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 14/183 (7%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRR 62
E ++IP+ V + V ++V+GP+G++ R+ + + E GK + D F R
Sbjct: 8 ETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTR 67
Query: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPR 120
K +RT H++N+I GVT GF YK++ VY+HFPI V + GD +IE NFLGEK R
Sbjct: 68 KTSVSIRTALRHVDNLISGVTRGFRYKMRFVYAHFPINVSIGGDGSLIEIRNFLGEKKVR 127
Query: 121 RAKILPGVT-----VKVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIV 175
+ ++L KVK EI+++G D E V ++ A I Q + K D R F DGIY+
Sbjct: 128 KVEMLDWCNHCSDPEKVK-DEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVS 186
Query: 176 EKA 178
EK+
Sbjct: 187 EKS 189
>emb|CAC04009.1| (AL391394) probable ribosomal protein L9 [Leishmania major]
Length = 190
Score = 113 bits (279), Expect = 2e-24
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVE--GGKVVIYKDFPRRKDVAIV 68
++IPEGV V V+G V V G +G + ++L + + V+ + + F + +A +
Sbjct: 10 LQIPEGVTVDVKGRKVTVTGKRGTLTKDLTHLQLDLRVDKKNRTFTVIRWFGSKIPIACL 69
Query: 69 RTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGV 128
T KAH+ NMI GVT+G+ +K++ Y+HFPI V V G + + NFLGEK RR +++P
Sbjct: 70 NTTKAHVQNMITGVTKGYRFKVRCAYAHFPINVSVDGQNIEVRNFLGEKRVRR-QLVPN- 127
Query: 129 TVKVK-------GQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEK 177
TVKV EI+ +G D E V + AA + Q + K D R F DGIY+ K
Sbjct: 128 TVKVSQTDPSKVKDEIVFDGNDLEQVSREAAVLHQMCLVKKKDIRKFLDGIYVQTK 183
>gb|AAD26563.1|AF124243_1 (AF124243) ribosomal protein homolog [Cryptosporidium parvum]
Length = 190
Score = 107 bits (265), Expect = 8e-23
Identities = 73/183 (39%), Positives = 97/183 (52%), Gaps = 11/183 (6%)
Query: 4 DAWVREEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEG-GKVV---IYKDF 59
D + E + EG VSV+ TV V G G+V R V I + G GKVV ++
Sbjct: 3 DIFTYESFRVMEGTTVSVKSRTVTVTGKFGQVTRSFNHLPVDIKLCGNGKVVRIEVWFGT 62
Query: 60 PRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKV--QGDEVIIENFLGEK 117
PR + + T + I NM+ GV + F YK+++VYSHFPI + G + I NFLGEK
Sbjct: 63 PRHQSA--INTVCSAIKNMMVGVMKKFEYKMRLVYSHFPINSNILNNGSLIEIRNFLGEK 120
Query: 118 APRRAKILPGVTVKVKG---QEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYI 174
R K+LPGV V+ E+I+ G D E V ++AA I Q D R F DGIY+
Sbjct: 121 RVRTVKMLPGVVVEKSNSVKDELIITGTDLELVSRSAALIHQCALARNKDIRKFLDGIYV 180
Query: 175 VEK 177
EK
Sbjct: 181 SEK 183
>gb|AAF53048.1| (AE003630) RpL9 gene product [alt 2] [Drosophila melanogaster]
Length = 208
Score = 103 bits (254), Expect = 2e-21
Identities = 64/177 (36%), Positives = 104/177 (58%), Gaps = 9/177 (5%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVV-IYKDFPRRKDVAIVR 69
++IP+ ++ SV+ V + G +G ++R + +++ + + + K F +K++A VR
Sbjct: 10 VKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFGTKKELAAVR 69
Query: 70 TFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPG 127
T +HI NMIKGVT GF YK++ VY+HFPI + +IE NFLGEK RR ++ PG
Sbjct: 70 TVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPG 129
Query: 128 VTV---KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGKP 181
VTV + E+IVEG D E+V + +A + W+ VFQ + +++K +P
Sbjct: 130 VTVVNSTAQKDELIVEGNDIESVRVREDDRCEARVLDFWN--VFQPKM-LIKKNQRP 183
>gb|AAG27917.1|AC027035_16 (AC027035) ribosomal protein L9, 5' partial [Arabidopsis thaliana]
Length = 149
Score = 96.0 bits (235), Expect = 3e-19
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 7/121 (5%)
Query: 52 KVVIYKDFPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGD--EVI 109
K+ I F RK A +RT +H++N+I GVT GF YK++ VY+HFPI + GD +
Sbjct: 25 KLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIE 84
Query: 110 IENFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDR 165
I NFLGEK R+ ++L GVT+ KVK EI+++G D E V ++ A I Q +T W +
Sbjct: 85 IRNFLGEKKVRKVEMLDGVTIVRSEKVK-DEIVLDGNDIELVSRSCALINQVLSLTSWYQ 143
Query: 166 R 166
R
Sbjct: 144 R 144
>sp|P33099|RL6_MICLU 50S RIBOSOMAL PROTEIN L6 >gi|322076|pir||S29886 ribosomal protein
L6 - Micrococcus luteus >gi|44430|emb|CAA35562.1|
(X17524) L6 protein [Micrococcus luteus]
Length = 178
Score = 92.4 bits (226), Expect = 3e-18
Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 8 REEIEIPEGVEVSVQGNTVKV---KGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKD 64
R I IP GV+V++ G+ V V KGPKG++E L P + +E G+V + + R+
Sbjct: 6 RLPITIPAGVDVTIDGDRVSVKGPKGPKGQLEHSLPTP-ITATLEEGQVTVARPDDERES 64
Query: 65 VAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKI 124
++ + I+NM++GVT GF+ +L+VV + + + K Q +E LG P K+
Sbjct: 65 RSLHGLTRTLISNMVEGVTNGFSKQLEVVGTGYRVQAKGQD----LEFDLGYSHPVPVKV 120
Query: 125 LPGVTVKVKGQEIIVEGIDK-EAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGK 180
G+T V+G + V GIDK + VG+TAANI + R + + G I KAGK
Sbjct: 121 SQGITFTVEGNRVTVAGIDKQQQVGETAANIRKLRRPDPYKGKGVYAGEQIRRKAGK 177
>sp|O02376|RL9_HAECO 60S RIBOSOMAL PROTEIN L9 >gi|2181210|emb|CAA73840.1| (Y13428)
ribosomal protein L9 [Haemonchus contortus]
Length = 141
Score = 90.5 bits (221), Expect = 1e-17
Identities = 49/115 (42%), Positives = 74/115 (63%), Gaps = 3/115 (2%)
Query: 9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEG-GKVVIYKDFPRRKDVAI 67
+ ++ P+GV +V+ V V GP+G ++R+ +++ G ++ + K F RK++A
Sbjct: 8 DTVDFPDGVTFTVKNRVVHVTGPRGTLKRDFRHLHMEMERVGKNQLRVRKWFGVRKEIAA 67
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQ--GDEVIIENFLGEKAPR 120
+RT +HI NMIKGVT+GF YK++ VY+HFPI V +Q G V I NFLGEK R
Sbjct: 68 IRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEKIVR 122
>pir||R5BS0F ribosomal protein L6 - Bacillus stearothermophilus
>gi|4388840|pdb|1RL6|A Chain A, Ribosomal Protein L6
>gi|6137592|pdb|1C04|B Chain B, Identification Of Known
Protein And Rna Structures In A 5 A Map Of The Large
Ribosomal Subunit From Haloarcula Marismortui
>gi|223378|prf||0801214A ribosomal protein L10 [Bacillus
stearothermophilus]
Length = 177
Score = 85.8 bits (209), Expect = 3e-16
Identities = 54/148 (36%), Positives = 88/148 (58%), Gaps = 6/148 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
++ IEIP GV V+V GNTV VKGPKGE+ R F P + I VEG + + + + A+
Sbjct: 5 KKPIEIPAGVTVTVNGNTVTVKGPKGELTR-TFHPDMTITVEGNVITVTRPSDEKHHRAL 63
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T ++ + NM++GV++G+ L++V + QG ++++ +G P + G
Sbjct: 64 HGTTRSLLANMVEGVSKGYEKALELVGVGY--RASKQGKKLVLS--VGYSHPVEIEPEEG 119
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
+ ++V Q +IIV+G DK+ VG+ AANI
Sbjct: 120 LEIEVPSQTKIIVKGADKQRVGELAANI 147
>sp|P02391|RL6_BACST 50S RIBOSOMAL PROTEIN L6 (BL10)
Length = 178
Score = 85.8 bits (209), Expect = 3e-16
Identities = 54/148 (36%), Positives = 88/148 (58%), Gaps = 6/148 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
++ IEIP GV V+V GNTV VKGPKGE+ R F P + I VEG + + + + A+
Sbjct: 6 KKPIEIPAGVTVTVNGNTVTVKGPKGELTR-TFHPDMTITVEGNVITVTRPSDEKHHRAL 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T ++ + NM++GV++G+ L++V + QG ++++ +G P + G
Sbjct: 65 HGTTRSLLANMVEGVSKGYEKALELVGVGY--RASKQGKKLVLS--VGYSHPVEIEPEEG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
+ ++V Q +IIV+G DK+ VG+ AANI
Sbjct: 121 LEIEVPSQTKIIVKGADKQRVGELAANI 148
>gb|AAA22700.1| (M57622) ribosomal protein L6 [Bacillus stearothermophilus]
Length = 178
Score = 85.8 bits (209), Expect = 3e-16
Identities = 54/148 (36%), Positives = 88/148 (58%), Gaps = 6/148 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
++ IEIP GV V+V GNTV VKGPKGE+ R F P + I VEG + + + + A+
Sbjct: 6 KKPIEIPAGVTVTVNGNTVTVKGPKGELTR-TFHPDMTITVEGNVITVTRPSDEKHHRAL 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T ++ + NM++GV++G+ L++V + QG ++++ +G P + G
Sbjct: 65 HGTTRSLLANMVEGVSKGYEKALELVGVGY--RASKQGKKLVLS--VGYSHPVEIEPEEG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
+ ++V Q +IIV+G DK+ VG+ AANI
Sbjct: 121 LEIEVPSQTKIIVKGADKQRVGELAANI 148
>pdb|1EG0|J Chain J, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 171
Score = 85.8 bits (209), Expect = 3e-16
Identities = 54/148 (36%), Positives = 88/148 (58%), Gaps = 6/148 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
++ IEIP GV V+V GNTV VKGPKGE+ R F P + I VEG + + + + A+
Sbjct: 6 KKPIEIPAGVTVTVNGNTVTVKGPKGELTR-TFHPDMTITVEGNVITVTRPSDEKHHRAL 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T ++ + NM++GV++G+ L++V + QG ++++ +G P + G
Sbjct: 65 HGTTRSLLANMVEGVSKGYEKALELVGVGY--RASKQGKKLVLS--VGYSHPVEIEPEEG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
+ ++V Q +IIV+G DK+ VG+ AANI
Sbjct: 121 LEIEVPSQTKIIVKGADKQRVGELAANI 148
>pdb|487D|J Chain J, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 164
Score = 85.0 bits (207), Expect = 5e-16
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 6/145 (4%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRT 70
IEIP GV V+V GNTV VKGPKGE+ R F P + I VEG + + + + A+ T
Sbjct: 2 IEIPAGVTVTVNGNTVTVKGPKGELTR-TFHPDMTITVEGNVITVTRPSDEKHHRALHGT 60
Query: 71 FKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTV 130
++ + NM++GV++G+ L++V + QG ++++ +G P + G+ +
Sbjct: 61 TRSLLANMVEGVSKGYEKALELVGVGY--RASKQGKKLVLS--VGYSHPVEIEPEEGLEI 116
Query: 131 KVKGQ-EIIVEGIDKEAVGQTAANI 154
+V Q +IIV+G DK+ VG+ AANI
Sbjct: 117 EVPSQTKIIVKGADKQRVGELAANI 141
>sp|Q9ZAE4|RL6_THEMA 50S RIBOSOMAL PROTEIN L6 >gi|7440704|pir||E72248 ribosomal protein
L6 - Thermotoga maritima (strain MSB8)
>gi|4982049|gb|AAD36551.1|AE001798_16 (AE001798)
ribosomal protein L6 [Thermotoga maritima]
Length = 184
Score = 84.3 bits (205), Expect = 9e-16
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 13/155 (8%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVI---YKDFPRRKD 64
++ I +P+GV V ++ N VKVKGPKGE+ +E F P VKI VEG +V + + R+ D
Sbjct: 6 KKPIVLPQGVTVEIKDNVVKVKGPKGELSQE-FLPYVKIEVEGNEVWVRPNEEQIIRKSD 64
Query: 65 VAIVRTFK----AHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
V+ F+ + I NM+ GVTEG+ +L++V + ++QG+ +++ LG P
Sbjct: 65 WRKVKMFQGTYWSLIRNMVVGVTEGYKKELEIVGIGY--RAQLQGNTLVMN--LGYAHPV 120
Query: 121 RAKILPGVTVKVKG-QEIIVEGIDKEAVGQTAANI 154
+I V ++V IIV GIDK+ VGQ AA I
Sbjct: 121 VYEIPSDVKIEVPAPNRIIVSGIDKQRVGQVAAEI 155
>emb|CAA79792.1| (Z21677) ribosomal protein L6 [Thermotoga maritima]
Length = 184
Score = 81.5 bits (198), Expect = 6e-15
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 13/155 (8%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVI---YKDFPRRKD 64
++ I +P+GV V ++ N VKVKGPKGE+ +E F P VKI VEG + + + R+ D
Sbjct: 6 KKPIVLPQGVTVEIKDNVVKVKGPKGELSQE-FLPYVKIEVEGNEGWVRPNEEQIIRKSD 64
Query: 65 VAIVRTFK----AHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPR 120
V+ F+ + I NM+ GVTEG+ +L++V + ++QG+ +++ LG P
Sbjct: 65 WRKVKMFQGTYWSLIRNMVVGVTEGYKKELEIVGIGY--RAQLQGNTLVMN--LGYAHPV 120
Query: 121 RAKILPGVTVKVKG-QEIIVEGIDKEAVGQTAANI 154
+I V ++V IIV GIDK+ VGQ AA I
Sbjct: 121 VYEIPSDVKIEVPAPNRIIVSGIDKQRVGQVAAEI 155
>sp|Q9Z9J9|RL6_BACHD 50S RIBOSOMAL PROTEIN L6 >gi|11276711|pir||T44398 ribosomal protein
L6 [imported] - Bacillus halodurans
>gi|4512419|dbj|BAA75286.1| (AB017508) rplF homologue
(identity of 78% to B. subtilis ) [Bacillus halodurans]
>gi|10172761|dbj|BAB03868.1| (AP001507) ribosomal
protein L6 (BL8) [Bacillus halodurans]
Length = 178
Score = 81.5 bits (198), Expect = 6e-15
Identities = 55/172 (31%), Positives = 95/172 (54%), Gaps = 7/172 (4%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRT 70
+EIP GV V+V G V VKGPKGE++R F P + + VE VV+ + +++ A+ T
Sbjct: 9 VEIPSGVTVTVNGADVTVKGPKGELKR-TFNPEIVVKVEDNTVVVERPSDKKEHRALHGT 67
Query: 71 FKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTV 130
++ I+NM++GV++GF L++V + + G ++++ +G P G+ +
Sbjct: 68 TRSLISNMVEGVSKGFEKSLELVGVGY--RAQKSGQKLVLN--VGYSHPVEIVPEKGIEI 123
Query: 131 KV-KGQEIIVEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
+V ++ V+GIDKE VG A+NI + + + +G Y+ K GK
Sbjct: 124 EVPSNTKVTVKGIDKERVGAVASNIRSVRLPEPYKGKGIRYEGEYVRRKEGK 175
>sp|Q9ZI38|RL6_AQUPY 50S RIBOSOMAL PROTEIN L6 >gi|4165879|gb|AAD08798.1| (AF040101)
ribosomal protein L6 [Aquifex pyrophilus]
Length = 162
Score = 81.1 bits (197), Expect = 8e-15
Identities = 59/152 (38%), Positives = 84/152 (54%), Gaps = 9/152 (5%)
Query: 7 VREEIEIPEGVEVSV--QGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKD 64
V++ I PE V+VS + + V V+GPKG++E + P +K+ + + I D P +
Sbjct: 5 VKKPIPYPENVKVSYDEKEHKVTVEGPKGKLELNIH-PDIKVTLNQQERWIKLDRPSDRS 63
Query: 65 V--AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRA 122
AI T A I NMIKGVTEGFT L++ + + Q ++E LG+ P
Sbjct: 64 FHKAIHGTMAALIKNMIKGVTEGFTEILEI----HGLGYRAQLKGNVLELHLGKSHPDIY 119
Query: 123 KILPGVTVKVKGQEIIVEGIDKEAVGQTAANI 154
I P V ++VKG EI + GIDK+ VGQ AA I
Sbjct: 120 PIPPDVKIEVKGNEIHIHGIDKQRVGQVAAEI 151
>sp|P95067|RL6_MYCTU 50S RIBOSOMAL PROTEIN L6 >gi|7440689|pir||B70644 probable ribosomal
protein L6 rplF - Mycobacterium tuberculosis (strain
H37RV) >gi|1806187|emb|CAB06443.1| (Z84395) rplF
[Mycobacterium tuberculosis]
Length = 179
Score = 78.4 bits (190), Expect = 5e-14
Identities = 52/175 (29%), Positives = 93/175 (52%), Gaps = 6/175 (3%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
++ I +P GV+V+++G ++ VKGPKG + + P + G +V+ + R++ ++
Sbjct: 6 KQPIPVPAGVDVTIEGQSISVKGPKGTLGLTVAEPIKVARNDDGAIVVTRPDDERRNRSL 65
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
+ ++N++ GVT+G+T K+++ F + +VQ +E LG P + G
Sbjct: 66 HGLSRTLVSNLVTGVTQGYTTKMEI----FGVGYRVQLKGSNLEFALGYSHPVVIEAPEG 121
Query: 128 VTVKVKG-QEIIVEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
+T V+ + V GIDK+ VGQ AANI + R + + V +G I K GK
Sbjct: 122 ITFAVQAPTKFTVSGIDKQKVGQIAANIRRLRRPDPYKGKGVRYEGEQIRRKVGK 176
>sp|O67565|RL6_AQUAE 50S RIBOSOMAL PROTEIN L6 >gi|7440697|pir||D70442 ribosomal protein
L06 - Aquifex aeolicus >gi|2983984|gb|AAC07530.1|
(AE000749) ribosomal protein L06 [Aquifex aeolicus]
Length = 183
Score = 78.4 bits (190), Expect = 5e-14
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 8 REEIEIPEGVEVSV--QGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDV 65
++ I PE V+V+ + + + V+GPKG++E + P +K+ V + I D P +
Sbjct: 6 KKPIPYPENVKVNYVEKEHKIVVEGPKGKLELNVH-PDIKVTVNQQERWIKLDRPTDRSF 64
Query: 66 --AIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAK 123
AI T A + NMIKGVTEGFT L++ + + Q ++E LG+ P
Sbjct: 65 HKAIHGTMAALVKNMIKGVTEGFTEVLEI----HGLGYRAQLKGNVLELHLGKSHPDIYP 120
Query: 124 ILPGVTVKVKGQEIIVEGIDKEAVGQTAANI 154
I P V ++VKG EI + GIDK+ VGQ AA I
Sbjct: 121 IPPDVKIEVKGNEIHIHGIDKQRVGQVAAEI 151
>emb|CAB82085.1| (AL161803) 50S ribosomal protein L6 [Streptomyces coelicolor A3(2)]
Length = 179
Score = 76.9 bits (186), Expect = 1e-13
Identities = 55/172 (31%), Positives = 85/172 (48%), Gaps = 6/172 (3%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRT 70
I +P GV+V++ G TV VKGPKG + + P E G + + + R+ A+
Sbjct: 9 IAVPAGVDVTIDGRTVSVKGPKGSLTHTVVAPIDIAKGEDGVLNVTRPNDERQSKALHGL 68
Query: 71 FKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTV 130
+ + NMI GVT+G+ KL++ + + K +E LG P + G+T
Sbjct: 69 SRTLVANMITGVTQGYVKKLEISGVGYRVLAKGSN----LEFSLGYSHPILVEAPEGITF 124
Query: 131 KVKG-QEIIVEGIDKEAVGQTAANIEQATRITKWDRR-VFQDGIYIVEKAGK 180
KV+ VEGIDK+ VG+ AANI + + + + V +G I K GK
Sbjct: 125 KVENPTHFSVEGIDKQKVGEVAANIRKLRKPDPYKAKGVKYEGEVIRRKVGK 176
>sp|P46786|RL6_STRCO 50S RIBOSOMAL PROTEIN L6 >gi|1076076|pir||S50001 ribosomal protein
L6 - Streptomyces coelicolor >gi|600032|emb|CAA58132.1|
(X83011) L6 ribosomal protein [Streptomyces coelicolor]
Length = 179
Score = 75.7 bits (183), Expect = 3e-13
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 13 IPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRTFK 72
+P GV+V++ G TV VKGPKG + + P E G + + + R+ A+ +
Sbjct: 11 VPAGVDVTIDGRTVSVKGPKGSLTHTVVAPIDIAKGEDGVLNVTRPNDERQSKALHGLSR 70
Query: 73 AHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTVKV 132
+ NMI GVT+G+ KL++ + + K +E LG P + G+T KV
Sbjct: 71 TLVANMITGVTQGYVKKLEISGVGYRVLAKGSN----LEFSLGYSHPILVEAPEGITFKV 126
Query: 133 KG-QEIIVEGIDKEAVGQTAANIEQATRITKWDRR-VFQDGIYIVEKAGK 180
+ VEGIDK+ VG+ AANI + + + V +G I K GK
Sbjct: 127 ENPTHFSVEGIDKQKVGEVAANIRNVRKPDPYKAKGVKYEGEVIRRKVGK 176
>pir||F83114 50S ribosomal protein L6 PA4248 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950465|gb|AAG07636.1|AE004841_14
(AE004841) 50S ribosomal protein L6 [Pseudomonas
aeruginosa]
Length = 177
Score = 74.9 bits (181), Expect = 6e-13
Identities = 44/148 (29%), Positives = 82/148 (54%), Gaps = 6/148 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
+ +++P GVE+ + G + +KG KG +E ++ P V++ + G++ ++ A+
Sbjct: 6 KNPVKLPAGVEIKLAGQQLSIKGAKGALELKVH-PSVEVIQDSGELRFAARNGDQQTRAM 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T +A +NNM+ GV++GF KL++V + K Q ++ LG P ++ G
Sbjct: 65 AGTTRALVNNMVVGVSQGFERKLQLV----GVGYKAQAKGQVLSLSLGFSHPVDYELPAG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
+ + Q +I+++GIDK+ VGQ AA I
Sbjct: 121 IVAETPSQTDILIKGIDKQLVGQVAAEI 148
>sp|O51446|RL6_BORBU 50S RIBOSOMAL PROTEIN L6 >gi|7440696|pir||D70161 ribosomal protein
L6 (rplF) - Lyme disease spirochete
>gi|2688398|gb|AAC66849.1| (AE001152) ribosomal protein
L6 (rplF) [Borrelia burgdorferi]
Length = 180
Score = 74.5 bits (180), Expect = 8e-13
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
R I+IP+ V+V V+ N V V+G +G + +++ + + VE G V++ + +K A
Sbjct: 6 RLPIKIPDAVKVDVKDNLVIVEGIRGRLVQDIK-DSINVKVENGSVIVDRVLNDKKAKAY 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
+++ I NM+KGVTEGF+ L + + V+ QG+ + + LG I G
Sbjct: 65 HGLYRSLIFNMVKGVTEGFSKSLTI--NGIGYRVEQQGNSLFLS--LGYSTQFEYVIPDG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
++VK+ G +I VEGIDK VGQ AA I + + + + D I K GK
Sbjct: 121 ISVKLDGNTKISVEGIDKFKVGQVAAEIRSLKKPEPYKGKGIKYDNEVIRRKVGK 175
>sp|P73306|RL6_SYNY3 50S RIBOSOMAL PROTEIN L6 >gi|7440691|pir||S77488 ribosomal protein
L6 - Synechocystis sp. (strain PCC 6803)
>gi|1652413|dbj|BAA17335.1| (D90905) 50S ribosomal
protein L6 [Synechocystis sp.]
Length = 179
Score = 74.1 bits (179), Expect = 1e-12
Identities = 59/179 (32%), Positives = 92/179 (50%), Gaps = 15/179 (8%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGK--VVIYKDFPR--RK 63
+ I +P V V +QG+ + VKGPKG +ER+L P I + G+ V +D R R+
Sbjct: 6 KRPIPLPAKVSVDIQGSHLSVKGPKGSLERQL--PEKVIVAQEGETITVTRQDESRTARE 63
Query: 64 DVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAK 123
+VRT A NM+ GV +GF +L++ + QG+++ + +G P
Sbjct: 64 RHGLVRTLVA---NMVDGVAQGFERRLEI--QGVGYRAQAQGNKLTLN--VGYSKPVEMT 116
Query: 124 ILPGVTVKVKGQ-EIIVEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
+ G+ VKV+ ++IV GIDKE +G TAA I + + + G Y+ KAGK
Sbjct: 117 MPQGIEVKVENNTQVIVSGIDKELLGNTAAKIRAVRPPEPYKGKGIRYQGEYVRRKAGK 175
>sp|O32998|RL6_MYCLE 50S RIBOSOMAL PROTEIN L6 >gi|11276712|pir||T45381 ribosomal protein
L6 [imported] - Mycobacterium leprae
>gi|2344849|emb|CAB11451.1| (Z98756) ribosomal protein
L6 [Mycobacterium leprae]
Length = 179
Score = 73.4 bits (177), Expect = 2e-12
Identities = 48/175 (27%), Positives = 91/175 (51%), Gaps = 6/175 (3%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
++ I +P GV++++ G V VKGPKG ++ + P + + G +V+ + R++ ++
Sbjct: 6 KQPIPVPAGVDITIDGQNVLVKGPKGTLDLTVAEPIMLARNDEGAIVVTRPDNERRNRSL 65
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
+ ++N++ GVT+G+T +++ F + + Q +E LG P + G
Sbjct: 66 HGLSRTLVSNLVTGVTQGYTVSMEI----FGVGYRAQLKGSNLEFALGYSHPVVIEAPEG 121
Query: 128 VTVKVKG-QEIIVEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
+T V+ + + GIDK+ VGQ +ANI + R + + V +G I K GK
Sbjct: 122 ITFAVQSPTKFTITGIDKQKVGQISANIRRLRRPDPYKGKGVRYEGEQIRRKVGK 176
>sp|P46898|RL6_BACSU 50S RIBOSOMAL PROTEIN L6 (BL10) >gi|7440688|pir||B69695 ribosomal
protein L6 (BL8) rplF - Bacillus subtilis
>gi|1044979|gb|AAB06814.1| (L47971) ribosomal protein L6
[Bacillus subtilis] >gi|1644198|dbj|BAA10981.1| (D64125)
ribosomal protein L6 [Bacillus subtilis]
>gi|2632398|emb|CAB11907.1| (Z99104) ribosomal protein
L6 (BL8) [Bacillus subtilis]
Length = 179
Score = 71.0 bits (171), Expect = 9e-12
Identities = 48/146 (32%), Positives = 84/146 (56%), Gaps = 7/146 (4%)
Query: 11 IEIPEGVEVSVQ-GNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVR 69
+EIP V V++ NTV VKGPKGE+ R F P ++I VE + + + +++ A+
Sbjct: 9 LEIPSDVTVTLNDNNTVAVKGPKGELTRT-FHPDMEIKVEDNVLTVARPSDQKEHRALHG 67
Query: 70 TFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVT 129
T ++ + NM++GV++GF L++V + G+++++ +G P G+
Sbjct: 68 TTRSLLGNMVEGVSKGFERGLELVGVGY--RASKSGNKLVLN--VGYSHPVEIVPEEGIE 123
Query: 130 VKVKGQ-EIIVEGIDKEAVGQTAANI 154
++V Q +++V+G DKE VG AANI
Sbjct: 124 IEVPSQTKVVVKGTDKERVGAIAANI 149
>sp|P24316|RL6_THETH 50S RIBOSOMAL PROTEIN L6 >gi|1514660|emb|CAA62288.1| (X90765)
ribosomal protein L6 [Thermus aquaticus]
Length = 180
Score = 71.0 bits (171), Expect = 9e-12
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
R I +P+GV V V VKVKGPKGE+E + P +++ VE G V + + R+ ++
Sbjct: 6 RLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVS-PEMRVVVEEGVVRVERPSDERRHKSL 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
+ I N +KGV+EG++ +L + + + + E+ + G P + G
Sbjct: 65 HGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTV----GFSHPVVVEPPEG 120
Query: 128 VTVKV-KGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKAGKPI 182
+T +V + + V GIDK+ VGQ AANI + + + + GIY AG+P+
Sbjct: 121 ITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK----GIYY---AGEPV 169
>sp|P25056|RL6_CHLTR 50S RIBOSOMAL PROTEIN L6 >gi|3328951|gb|AAC68115.1| (AE001323) L6
Ribosomal Protein [Chlamydia trachomatis]
Length = 183
Score = 70.6 bits (170), Expect = 1e-11
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVI-----YKDFPRR 62
R+ I +P+GVEVS+Q + + VKGPKG + + L V+I V+G +V + D P R
Sbjct: 6 RDPIVLPQGVEVSIQNDEISVKGPKGSLTQVLA-KEVEIAVKGNEVFVTPAAHVVDRPGR 64
Query: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRA 122
I + A I NM+KGV GF +L+++ F VQG +++ +G P +
Sbjct: 65 ----IQGLYWALIANMVKGVHTGFEKRLEMIGVGF--RAAVQGS--LLDLSIGVSHPTKM 116
Query: 123 KILPGVTVKVKGQEII-VEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
I G+ V V+ +I ++GI+K+ VG+ AA + + + + + Y+ KAGK
Sbjct: 117 PIPTGLEVSVEKNTLISIKGINKQLVGEFAACVRAKRPPEPYKGKGIRYENEYVRRKAGK 176
>sp|P46181|RL6_BUCAK 50S RIBOSOMAL PROTEIN L6 >gi|632228|pir||JC2281 ribosomal protein
L6 - pea aphid symbiont bacterium
>gi|710620|dbj|BAA06590.1| (D31786) ribosomal protein L6
[Acyrthosiphon kondoi endosymbiont]
Length = 177
Score = 70.2 bits (169), Expect = 1e-11
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRT 70
+ IP GVEV + G + +KG GE+ R + V + E + R A T
Sbjct: 9 VVIPAGVEVKLNGQVISIKGKNGELTRTVH-DAVIVKQEANALNFRPREGFRNAWAQAGT 67
Query: 71 FKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTV 130
+A +N M+ GVTEGFT KL++V + VK ++ LG P ++ G+T
Sbjct: 68 TRALLNAMVVGVTEGFTKKLQLVGVGYRAAVKGN----VVNLALGFSHPIEHQLPAGITA 123
Query: 131 KVKGQ-EIIVEGIDKEAVGQTAANIEQATR 159
+ Q EI+++G+DK+ +GQ AA++ R
Sbjct: 124 ECPSQTEIVLKGVDKQVIGQAAADLRAYRR 153
>sp|O24703|RL6_SYNP6 50S RIBOSOMAL PROTEIN L6 >gi|2446904|dbj|BAA22463.1| (AB000111) 50S
ribosomal protein L6 [Synechococcus sp.]
Length = 179
Score = 69.9 bits (168), Expect = 2e-11
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYK-DFPR--RKD 64
+ I IP V V++ G V VKGPKGE+ REL GV + E G +++ + D R R+
Sbjct: 6 KRPIPIPAKVSVAIDGRLVSVKGPKGELSREL-PSGVVVTQEDGNIIVSRADESRLARQR 64
Query: 65 VAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKI 124
+ RT A N+++GV GF +L+++ + +VQG +I+ +G P + +
Sbjct: 65 HGLSRTLVA---NLVEGVDSGFQKRLEIIGVGY--RAQVQGTTLILN--VGYSNPVQIEP 117
Query: 125 LPGVTVKVKGQ-EIIVEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
G+ V+ ++V GI KE VG TAA I + + + G ++ KAGK
Sbjct: 118 PEGIQFVVENNTNVVVSGISKEVVGNTAARIRAVRPPEPYKGKGIRYAGEVVLRKAGK 175
>pir||A37315 ribosomal protein L6 - Chlamydia trachomatis
>gi|144612|gb|AAA23166.1| (M60652) ribosomal protein L6
[Chlamydia trachomatis] >gi|144625|gb|AAA23176.1|
(M80325) ribosomal protein CtrL6e [Chlamydia
trachomatis]
Length = 183
Score = 69.5 bits (167), Expect = 3e-11
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVI-----YKDFPRR 62
R+ I +P+GVEVS+Q + + VKGPKG + + L V+I V+G +V + D P R
Sbjct: 6 RDPIVLPQGVEVSIQNDEISVKGPKGSLTQVLA-KEVEIAVKGNEVFVAPAAHVVDRPGR 64
Query: 63 KDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRA 122
+ + A I NM+KGV GF +L+++ F VQG +++ +G P +
Sbjct: 65 ----MQGLYWALIANMVKGVHTGFEKRLEMIGVGF--RAAVQGS--LLDLSIGVSHPTKM 116
Query: 123 KILPGVTVKVKGQEII-VEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAGK 180
I G+ V V+ +I ++GI+K+ VG+ AA + + + + + Y+ KAGK
Sbjct: 117 PIPTGLEVSVEKNTLISIKGINKQLVGEFAACVRAKRPPEPYKGKGIRYENEYVRRKAGK 176
>pir||H82713 50S ribosomal protein L6 XF1167 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106133|gb|AAF83977.1|AE003951_2
(AE003951) 50S ribosomal protein L6 [Xylella fastidiosa]
Length = 175
Score = 69.5 bits (167), Expect = 3e-11
Identities = 52/151 (34%), Positives = 85/151 (55%), Gaps = 14/151 (9%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWP---GVKIFVEGGKVVIYKDFPRRKD 64
++ I +P+GVEVSV+ + + VKG KG L +P V + V+G + + + P
Sbjct: 6 KKPISVPKGVEVSVRSDMLTVKGVKG----VLTFPKSDNVNVVVDGDILTLSANDP--SH 59
Query: 65 VAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKI 124
V++ T +A ++NMIKGV+ GF KL++V + +QG+ + + LG P
Sbjct: 60 VSLAGTVRAILSNMIKGVSIGFERKLELVGVGY--RASMQGENLNLS--LGFSHPLVFVP 115
Query: 125 LPGVTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
G+T+ Q E++V+GIDK+ VG+ AA I
Sbjct: 116 PEGITLLTPSQTEVVVQGIDKQRVGEVAAKI 146
>pir||G82057 ribosomal protein L6 VC2581 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657168|gb|AAF95722.1| (AE004326)
ribosomal protein L6 [Vibrio cholerae]
Length = 177
Score = 69.1 bits (166), Expect = 3e-11
Identities = 55/149 (36%), Positives = 78/149 (51%), Gaps = 14/149 (9%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDV----A 66
+ IP GVEV + G + +KG KGE+ R +F GV I E ++ F R+ V A
Sbjct: 9 VAIPAGVEVKLNGQEITIKGAKGELTR-VFHNGVVIAQEDNQLT----FGPREGVANAWA 63
Query: 67 IVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILP 126
T +A + NM+ GVTEGFT KL V ++G+ V + LG P ++
Sbjct: 64 QAGTARALVKNMVVGVTEGFTKKL--VLKGVGYRAAMKGNAVGLT--LGFSHPVEHELPA 119
Query: 127 GVTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
GV + Q EI++ G DK+ VGQ AA+I
Sbjct: 120 GVKAECPSQTEIVLTGCDKQVVGQVAADI 148
>sp|Q9XD21|RL6_LEPIN RIBOSOMAL PROTEIN L6 >gi|5163219|gb|AAD40598.1|AF115283_17
(AF115283) ribosomal protein L6 [Leptospira interrogans]
Length = 179
Score = 68.7 bits (165), Expect = 4e-11
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 12/151 (7%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
+ EI++P+ VEV + +KVKGP GE+ +F G+ + E G V + + +K VA+
Sbjct: 6 KAEIKLPDKVEVKQENANIKVKGPLGELFTPIF-EGISVKTENGIVKLERSNEDQKVVAL 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE-NFLGE---KAPRRAK 123
+A + N +KGV++G+ L++ + + +G+++++ F E KAP+ K
Sbjct: 65 HGLTRALLMNCVKGVSQGWEKNLEITGVGY--RAQKRGEDLVMSLGFSHEVVYKAPKGIK 122
Query: 124 ILPGVTVKVKGQEIIVEGIDKEAVGQTAANI 154
I +K+K V GIDK+ VGQ AA+I
Sbjct: 123 IDVQEQLKIK-----VSGIDKQLVGQVAADI 148
>dbj|BAA97125.1| (AB045221) lectin-like protein LA2-20 [Lactobacillus gasseri]
Length = 176
Score = 68.7 bits (165), Expect = 4e-11
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVRT 70
IE+PE V V+ G+ + VKGPKGE+ R F P + + G++ + D A+ T
Sbjct: 9 IEVPEKVTVTKNGDDITVKGPKGELTR-YFDPRITFEQKDGEIHFSRS--NEADKALHGT 65
Query: 71 FKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTV 130
+A++ +MI+GVT+G+ KL +V + QG ++ + +G P + GVTV
Sbjct: 66 ERANLASMIEGVTDGYVKKLTLVGVGY--RAVAQGKKLTLN--VGYSHPVVFEAPEGVTV 121
Query: 131 KV-KGQEIIVEGIDKEAVGQTAANI 154
K I +EGI K+ VGQ AA I
Sbjct: 122 KTPSATSIEIEGISKQVVGQFAAEI 146
>sp|P04448|RL6_MYCCA 50S RIBOSOMAL PROTEIN L6 >gi|71115|pir||R5YM6 ribosomal protein L6
- Mycoplasma capricolum >gi|44224|emb|CAA29719.1|
(X06414) ribosomal protein L6 (AA 1-180) [Mycoplasma
capricolum] >gi|44232|emb|CAA25588.1| (X01121) ribosomal
protein L6 (aa 1-180) [Mycoplasma capricolum]
Length = 180
Score = 68.3 bits (164), Expect = 6e-11
Identities = 48/146 (32%), Positives = 80/146 (53%), Gaps = 7/146 (4%)
Query: 11 IEIPEGVEVSV-QGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAIVR 69
++IP GVEV + + N V + G KG + ++ F P +KI VE K++ + ++ +
Sbjct: 9 LQIPNGVEVKIAENNLVTITGSKGTLSKQ-FSPLIKIEVEENKLITKRLNEQKHTKQLHG 67
Query: 70 TFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVT 129
T + + M+ GV+EGF +L++ + V G ++ + LG P +I GV
Sbjct: 68 TTNSLLQGMLTGVSEGFKKELQITGVGYKAAVN--GSKLNLS--LGYSHPVEFEIPDGVV 123
Query: 130 VK-VKGQEIIVEGIDKEAVGQTAANI 154
++ VK E+ + GIDK+ VGQ AANI
Sbjct: 124 IQAVKPTELAITGIDKQLVGQVAANI 149
>pir||A81664 ribosomal protein L6 TC0801 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190829|gb|AAF39604.1| (AE002347)
ribosomal protein L6 [Chlamydia muridarum]
Length = 183
Score = 68.3 bits (164), Expect = 6e-11
Identities = 57/181 (31%), Positives = 93/181 (50%), Gaps = 18/181 (9%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEV------ERELFWPGVKIFVEGGKVVIYKDFPR 61
R+ I +P+GVEVS+Q + + VKGPKG + E E+ G ++FV +I D P
Sbjct: 6 RDPIVLPQGVEVSIQNDEISVKGPKGSLTQVLAKEVEIAVKGNEVFVSPAAHII--DRPG 63
Query: 62 RKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRR 121
R + + A I NM+KGV GF +L+++ F VQG ++ +G P +
Sbjct: 64 R----MQGLYWALIANMVKGVHLGFEKRLEMIGVGF--RASVQGS--FLDLSIGVSHPTK 115
Query: 122 AKILPGVTVKVKGQEII-VEGIDKEAVGQTAANIEQATRITKW-DRRVFQDGIYIVEKAG 179
I G+ V V+ +I ++GI+K+ VG+ AA + + + + + Y+ KAG
Sbjct: 116 MPIPTGLEVSVEKNTLISIKGINKQLVGEFAACVRAKRPPEPYKGKGIRYENEYVRRKAG 175
Query: 180 K 180
K
Sbjct: 176 K 176
>sp|P44347|RL6_HAEIN 50S RIBOSOMAL PROTEIN L6 >gi|1075257|pir||B64094 ribosomal protein
L6 - Haemophilus influenzae (strain Rd KW20)
>gi|1573803|gb|AAC22451.1| (U32762) ribosomal protein L6
(rpL6) [Haemophilus influenzae Rd]
Length = 177
Score = 67.9 bits (163), Expect = 7e-11
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 11 IEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDV---AI 67
+ IP GVEV + G + VKG GE+ R++ V++ + G+ + PR V A
Sbjct: 9 VNIPAGVEVKLDGQLLTVKGKNGELSRKIH-ESVEVKQDNGQ---FTFTPREGFVEANAQ 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T +A +N M+ GVTEGFT KL +V + +++G+ + + LG P + G
Sbjct: 65 SGTARALVNAMVIGVTEGFTKKLVLVGVGY--RAQLKGNAIALS--LGYSHPVEHTLPVG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANIEQATR 159
+T + Q EI+++G DK+ +GQ AA+I R
Sbjct: 121 ITAECPSQTEIVLKGADKQLIGQVAADIRAYRR 153
>sp|Q50303|RL6_MYCPN 50S RIBOSOMAL PROTEIN L6 >gi|2127652|pir||S62827 ribosomal protein
L6 - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|2146617|pir||S73977 ribosomal protein L6 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1215708|gb|AAC43701.1| (U34795) RplF [Mycoplasma
pneumoniae] >gi|1674356|gb|AAB96299.1| (AE000061)
ribosomal protein L6 [Mycoplasma pneumoniae]
Length = 184
Score = 67.5 bits (162), Expect = 1e-10
Identities = 59/177 (33%), Positives = 89/177 (49%), Gaps = 21/177 (11%)
Query: 14 PEGVEVSVQGNTVKVKGPKGEVERELFWPGV--KIFVEGGKVVIYKDFPRRKDVAIVRTF 71
P V ++ Q + + VKGP G++E +L P + K ++ + I ++ ++ T+
Sbjct: 13 PAKVNLNFQKDHIAVKGPLGQIELKLP-PNLPLKFELKDNNLQITRNNELKQSKIFHGTY 71
Query: 72 KAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPGVTVK 131
A I N I GVT+GF KL++V + V+G+ + ++ LG P + KI G+TVK
Sbjct: 72 NALITNAIIGVTQGFEKKLRLVGVGY--RANVEGETLNLQ--LGYSHPIKEKIPKGLTVK 127
Query: 132 V-KGQEIIVEGIDKEAVGQTAANIEQATRITKW-------DRRVFQDGIYIVEKAGK 180
V K EI + GI KE VGQ AT + KW + V IV KAGK
Sbjct: 128 VEKNTEITISGISKELVGQF------ATEVRKWRKPEPYKGKGVLYFDEVIVRKAGK 178
>pir||G81232 50S ribosomal protein L6 NMB0157 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225375|gb|AAF40615.1| (AE002373) 50S ribosomal
protein L6 [Neisseria meningitidis MC58]
Length = 177
Score = 67.5 bits (162), Expect = 1e-10
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Query: 8 REEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFVEGGKVVIYKDFPRRKDVAI 67
+ + +P GVEV + +KG GE+ L V I GK+ + ++ A+
Sbjct: 6 KNPVTVPAGVEVKFGAEALVIKGKNGELSFPLH-SDVAIEFNDGKLTFVANNSSKQANAM 64
Query: 68 VRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIENFLGEKAPRRAKILPG 127
T +A ++NM+KGV+EGF +L+++ + + Q I+ LG P ++ G
Sbjct: 65 SGTARALVSNMVKGVSEGFEKRLQLI----GVGYRAQAQGKILNLSLGFSHPIVYEMPEG 120
Query: 128 VTVKVKGQ-EIIVEGIDKEAVGQTAANI 154
V+V+ Q EI++ G DK+ VGQ AA I
Sbjct: 121 VSVQTPSQTEIVLTGSDKQVVGQVAAEI 148
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67739156
Number of Sequences: 2977
Number of extensions: 2764056
Number of successful extensions: 6223
Number of sequences better than 1.0e-10: 71
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 6032
Number of HSP's gapped (non-prelim): 73
length of query: 184
length of database: 189,106,746
effective HSP length: 53
effective length of query: 131
effective length of database: 157,386,935
effective search space: 20617688485
effective search space used: 20617688485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)