BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2135 (rpl18P) DE:LSU ribosomal protein L18P (rpl18P)
(203 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75145 lsu ribosomal protein l18p (rpl18p) PAB2135 - Pyroco... 420 e-117
sp|O59438|RL18_PYRHO 50S RIBOSOMAL PROTEIN L18P >gi|7440745|pir|... 415 e-115
dbj|BAB13703.1| (AB040118) ribosomal protein PfL18 [Pyrococcus f... 408 e-113
sp|P54044|RL18_METJA 50S RIBOSOMAL PROTEIN L18P >gi|2119119|pir|... 271 5e-72
sp|P14033|RL18_METVA 50S RIBOSOMAL PROTEIN L18P >gi|71150|pir||R... 245 2e-64
sp|O26130|RL18_METTH 50S RIBOSOMAL PROTEIN L18P >gi|7440747|pir|... 235 2e-61
sp|Q9YF94|RL18_AERPE 50S RIBOSOMAL PROTEIN L18P >gi|7440749|pir|... 232 2e-60
gi|11499490 LSU ribosomal protein L18P (rpl18P) [Archaeoglobus f... 223 1e-57
sp|P14123|RL18_HALMA 50S RIBOSOMAL PROTEIN L18P (HMAL18) (HL12) ... 198 5e-50
pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Sub... 196 2e-49
gb|AAK41000.1| LSU ribosomal protein L18AB (rpl18AB) [Sulfolobus... 195 4e-49
sp|Q9UX88|RL18_SULSO 50S RIBOSOMAL PROTEIN L18P >gi|6015777|emb|... 195 4e-49
gb|AAG19955.1| (AE005077) 50S ribosomal protein L18P; Rpl18p [Ha... 191 6e-48
sp|O05640|RL18_SULAC 50S RIBOSOMAL PROTEIN L18P >gi|2052265|emb|... 180 1e-44
sp|O74306|RL5B_SCHPO 60S RIBOSOMAL PROTEIN L5-B >gi|7490045|pir|... 118 5e-26
sp|P52822|RL5A_SCHPO 60S RIBOSOMAL PROTEIN L5-A >gi|7490044|pir|... 118 5e-26
sp|P49405|RL5_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L5 >gi|750415... 118 5e-26
sp|O22608|RL5_DUNSA 60S RIBOSOMAL PROTEIN L5 >gi|7440744|pir||T0... 113 1e-24
gb|AAF45418.2| (AE002910) yip6 gene product [alt 1] [Drosophila ... 111 5e-24
sp|O44248|RL5_ANOGA 60S RIBOSOMAL PROTEIN L5 >gi|2809379|gb|AAB9... 110 1e-23
dbj|BAB11380.1| (AB016876) 60S ribosomal protein L5 [Arabidopsis... 108 7e-23
pir||S39486 ribosomal protein L5 - rice 107 9e-23
sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5 107 9e-23
sp|P09895|RL5_RAT 60S RIBOSOMAL PROTEIN L5 >gi|71149|pir||R5RTL5... 107 1e-22
sp|P22451|RL5_CHICK 60S RIBOSOMAL PROTEIN L5 >gi|345694|pir||JC1... 107 1e-22
gi|6325126 Ribosomal protein L5 (L1a)(YL3); Rpl5p [Saccharomyces... 106 2e-22
gb|AAB05674.1| (U48270) ribosomal protein L5 [Schizosaccharomyce... 106 2e-22
sp|Q26481|RL5_STYCL 60S RIBOSOMAL PROTEIN L5 >gi|1374957|gb|AAC0... 106 2e-22
gi|11421839 ribosomal protein L5 [Homo sapiens] 106 2e-22
gb|AAG39281.1|AF113210_1 (AF113210) MSTP030 [Homo sapiens] 106 2e-22
sp|O59953|RL5_NEUCR 60S RIBOSOMAL PROTEIN L5 >gi|3003044|gb|AAC0... 106 3e-22
sp|P15126|RL5B_XENLA 60S RIBOSOMAL PROTEIN L5B >gi|85844|pir||B3... 105 4e-22
sp|P26321|RL5_YEAST 60S RIBOSOMAL PROTEIN L5 (L1) (YL3) (RIBOSOM... 105 4e-22
sp|O65353|RL5_HELAN 60S RIBOSOMAL PROTEIN L5 >gi|7440750|pir||T1... 105 5e-22
sp|P15125|RL5A_XENLA 60S RIBOSOMAL PROTEIN L5A >gi|85843|pir||A3... 104 8e-22
gi|4506655 ribosomal protein L5 [Homo sapiens] >gi|1173054|sp|P4... 104 8e-22
emb|CAC12376.1| (AL445067) probable 50S ribosomal protein L18 [T... 104 1e-21
sp|O76190|RL5_BOMMO 60S RIBOSOMAL PROTEIN L5 >gi|3282245|gb|AAC2... 103 2e-21
gb|AAA42074.1| (M17419) ribosomal protein L5 [Rattus norvegicus] 102 2e-21
gb|AAD37804.1|AF152472_1 (AF152472) ribosomal protein L5 [Myxine... 100 2e-20
pir||T43382 ribosomal protein L5 - fission yeast (Schizosaccharo... 98 1e-19
gb|AAF27819.1|AF195190_1 (AF195190) yippee interacting protein 6... 78 6e-14
gb|AAB18361.1| (U76609) ribosomal L5 protein [Homo sapiens] 69 5e-11
pir||PC4210 ribosomal protein L5 - human (fragment) 69 5e-11
>pir||E75145 lsu ribosomal protein l18p (rpl18p) PAB2135 - Pyrococcus abyssi
(strain Orsay) >gi|5457754|emb|CAB49244.1| (AJ248284)
LSU ribosomal protein L18P (rpl18P) [Pyrococcus abyssi]
Length = 203
Score = 420 bits (1067), Expect = e-117
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV
Sbjct: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV
Sbjct: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK
Sbjct: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
Query: 181 LPEHFDEVKARIIEKFESEGARE 203
LPEHFDEVKARIIEKFESEGARE
Sbjct: 181 LPEHFDEVKARIIEKFESEGARE 203
>sp|O59438|RL18_PYRHO 50S RIBOSOMAL PROTEIN L18P >gi|7440745|pir||A71185 probable
ribosomal protein L18 - Pyrococcus horikoshii
>gi|3258189|dbj|BAA30872.1| (AP000007) 206aa long
hypothetical 50S ribosomal protein L18 [Pyrococcus
horikoshii]
Length = 206
Score = 415 bits (1055), Expect = e-115
Identities = 198/203 (97%), Positives = 203/203 (99%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV
Sbjct: 4 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 63
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSS+FAV
Sbjct: 64 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSIFAV 123
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGA+DAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDE++FRRQFGGYLEKGLDPEK
Sbjct: 124 LKGAIDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGLDPEK 183
Query: 181 LPEHFDEVKARIIEKFESEGARE 203
LPEHF+EVKARIIEKFESEGARE
Sbjct: 184 LPEHFEEVKARIIEKFESEGARE 206
>dbj|BAB13703.1| (AB040118) ribosomal protein PfL18 [Pyrococcus furiosus]
Length = 203
Score = 408 bits (1038), Expect = e-113
Identities = 196/203 (96%), Positives = 201/203 (98%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV
Sbjct: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAK+AGIEEAILDIGLHPPVRGSSVFAV
Sbjct: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILDIGLHPPVRGSSVFAV 120
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGAVDAGLNVPHSPEIFP++YRIRGEHIAEYA+MLKEQDEEKFRRQFGGYL KGLDPEK
Sbjct: 121 LKGAVDAGLNVPHSPEIFPDEYRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEK 180
Query: 181 LPEHFDEVKARIIEKFESEGARE 203
LPEHF+EVKARIIEKFE EGARE
Sbjct: 181 LPEHFEEVKARIIEKFEGEGARE 203
>sp|P54044|RL18_METJA 50S RIBOSOMAL PROTEIN L18P >gi|2119119|pir||B64359 ribosomal
protein L18 - Methanococcus jannaschii
>gi|1591176|gb|AAB98463.1| (U67497) LSU ribosomal
protein L18P [Methanococcus jannaschii]
Length = 195
Score = 271 bits (685), Expect = 5e-72
Identities = 129/196 (65%), Positives = 158/196 (79%), Gaps = 1/196 (0%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MA GP YRV FRRRRE KT+YRKRLKLL S KPRLV R++LNH IAQI++YD KGD+T+V
Sbjct: 1 MATGPTYRVKFRRRREAKTDYRKRLKLLLSRKPRLVARRTLNHCIAQIVLYDEKGDKTVV 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+RELI+ G+KGH GN PSAYL G L+G KA G EA+LDIGLH +G+++FA+
Sbjct: 61 SAHSRELIK-LGYKGHTGNLPSAYLTGYLLGKKALAKGYTEAVLDIGLHRATKGNAIFAI 119
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGA+DAG+ +PH EI P + RIRGEHI YA MLKEQDEE++++QF YLEKGL+PEK
Sbjct: 120 LKGALDAGMEIPHGEEILPSEERIRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGLEPEK 179
Query: 181 LPEHFDEVKARIIEKF 196
LPEHF+E+KA+I F
Sbjct: 180 LPEHFEEIKAKIDSMF 195
>sp|P14033|RL18_METVA 50S RIBOSOMAL PROTEIN L18P >gi|71150|pir||R5MX18 ribosomal protein
L18 - Methanococcus vannielii >gi|44767|emb|CAA34699.1|
(X16720) rpL18 (AA 1-195) [Methanococcus vannielii]
Length = 195
Score = 245 bits (620), Expect = 2e-64
Identities = 118/193 (61%), Positives = 155/193 (80%), Gaps = 2/193 (1%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MA ++RVPFRRRREGKT++R+RL LL SGKPRLV RKSLN+ IAQ++ YD KGD LV
Sbjct: 3 MAQNAKHRVPFRRRREGKTDFRQRLGLLLSGKPRLVARKSLNNIIAQLMAYDEKGDIVLV 62
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+REL++ G+KGHCGN P+AYL GLL+G KA + G+EEAILD GLH +G+++FAV
Sbjct: 63 SAHSRELVK-MGYKGHCGNLPAAYLTGLLLGKKAVEEGLEEAILDKGLHRATKGAAIFAV 121
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGA+DAG+++P EI ++ R+ G HI +YA +LKE DEE +++QF YLEKGL+PE
Sbjct: 122 LKGALDAGMDIPCGEEIIADEERLNGTHIKQYAELLKE-DEEAYKKQFSKYLEKGLNPED 180
Query: 181 LPEHFDEVKARII 193
LPEHF+E+K +I+
Sbjct: 181 LPEHFEELKGKIL 193
>sp|O26130|RL18_METTH 50S RIBOSOMAL PROTEIN L18P >gi|7440747|pir||B69127 ribosomal
protein L5 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621059|gb|AAB84531.1| (AE000796)
ribosomal protein L5 [Methanobacterium
thermoautotrophicum]
Length = 192
Score = 235 bits (594), Expect = 2e-61
Identities = 119/195 (61%), Positives = 144/195 (73%), Gaps = 4/195 (2%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MAHGPRY++ FRRRREGKT+YR R K++++GK RLVVR + H IAQII GD TLV
Sbjct: 1 MAHGPRYKLAFRRRREGKTDYRARYKMVETGKSRLVVRITTYHVIAQIINVGMNGDETLV 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+++L + GW G NT +AYL G L G +A K GIEEA+LDIGL P +RGS VFA
Sbjct: 61 SAHSKQL-QKMGWLGGTSNTAAAYLTGYLCGKRALKEGIEEAVLDIGLRPAIRGSKVFAA 119
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGAVDAGLNVPH + P++ RIRGEHI EYA L DEE+ R++F YLE+GL P
Sbjct: 120 LKGAVDAGLNVPHGESVLPDESRIRGEHIMEYAESL---DEEELRKRFSKYLERGLSPVD 176
Query: 181 LPEHFDEVKARIIEK 195
LPEHFDE+K RI E+
Sbjct: 177 LPEHFDEIKKRIDEE 191
>sp|Q9YF94|RL18_AERPE 50S RIBOSOMAL PROTEIN L18P >gi|7440749|pir||B72726 probable
ribosomal protein L18 APE0347 - Aeropyrum pernix
(strain K1) >gi|5103986|dbj|BAA79302.1| (AP000059) 214aa
long hypothetical 50S ribosomal protein L18 [Aeropyrum
pernix]
Length = 214
Score = 232 bits (586), Expect = 2e-60
Identities = 110/197 (55%), Positives = 145/197 (72%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
M GPRYRVP RRRREGKTNY +R +L+KSGKPR+ VR S + Q + +GDR +
Sbjct: 1 MGRGPRYRVPLRRRREGKTNYYRRFRLVKSGKPRMAVRISNEYLWVQFLEARIEGDRVIA 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
+AH+RELI+ FGWKG NT +AYL G L G +A + G+ EA+LD+GLH PV+GS VFA
Sbjct: 61 AAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALEKGVREAVLDVGLHKPVKGSRVFAA 120
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
LKGA+DAG+ +PHS EI P D R+R EHIA++A LKE++ E ++RQF YL++GL+PE+
Sbjct: 121 LKGALDAGVEIPHSEEILPGDERVRCEHIAQWAEALKEENAELYQRQFSRYLDRGLNPEE 180
Query: 181 LPEHFDEVKARIIEKFE 197
LP H +EVK I E ++
Sbjct: 181 LPGHVEEVKKAIEEAYK 197
>gi|11499490 LSU ribosomal protein L18P (rpl18P) [Archaeoglobus fulgidus]
>gi|3914683|sp|O28373|RL18_ARCFU 50S RIBOSOMAL PROTEIN
L18P >gi|7440746|pir||A69488 LSU ribosomal protein L18P
(rpl18P) homolog - Archaeoglobus fulgidus
>gi|2648633|gb|AAB89343.1| (AE000971) LSU ribosomal
protein L18P (rpl18P) [Archaeoglobus fulgidus]
Length = 189
Score = 223 bits (563), Expect = 1e-57
Identities = 113/193 (58%), Positives = 138/193 (70%), Gaps = 9/193 (4%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
+A GPRY+VP RRRREGKTNYRKRLKLL S KPRLVVR + IAQI+ Y P+GDR +V
Sbjct: 3 LARGPRYKVPLRRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVV 62
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
+ ++R+FGWKG NTP+AYL G+LI KA + GI EA+LDIGLH P RGS VFAV
Sbjct: 63 GVDSA-MLREFGWKGDLNNTPAAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAV 121
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
L+GAV+ GL VPHS E+ P+D RIRGEHIA Y M E +FG Y ++GL P
Sbjct: 122 LRGAVEGGLEVPHSDEVLPDDSRIRGEHIAAYYEMNPE--------RFGEYEKRGLKPSD 173
Query: 181 LPEHFDEVKARII 193
LP H DE+K +++
Sbjct: 174 LPAHVDEIKEKLM 186
>sp|P14123|RL18_HALMA 50S RIBOSOMAL PROTEIN L18P (HMAL18) (HL12) >gi|71151|pir||R5HS18
ribosomal protein L18 [validated] - Haloarcula
marismortui >gi|48867|emb|CAA41290.1| (X58395) ribosomal
protein [Haloarcula marismortui]
>gi|228190|prf||1718307G ribosomal protein L18
[Haloarcula marismortui]
Length = 187
Score = 198 bits (498), Expect = 5e-50
Identities = 98/194 (50%), Positives = 131/194 (67%), Gaps = 12/194 (6%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MA GPRY+VP RRRRE +T+Y +RL+LLKSGKPRLV RKS H AQ++ P GD TL
Sbjct: 1 MATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLA 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+ +L ++GW+ GN PSAYL GLL G +A++AG+EEA+LDIGL+ P GS VFA+
Sbjct: 61 SAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAI 119
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
+GA+DAGL++PH+ ++ + R RG HIAEY L+E D
Sbjct: 120 QEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEP-----------LYSGDFDAAD 168
Query: 181 LPEHFDEVKARIIE 194
LPEHFDE++ +++
Sbjct: 169 LPEHFDELRETLLD 182
>pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 186
Score = 196 bits (493), Expect = 2e-49
Identities = 97/193 (50%), Positives = 130/193 (67%), Gaps = 12/193 (6%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVS 61
A GPRY+VP RRRRE +T+Y +RL+LLKSGKPRLV RKS H AQ++ P GD TL S
Sbjct: 1 ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLAS 60
Query: 62 AHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAVL 121
AH+ +L ++GW+ GN PSAYL GLL G +A++AG+EEA+LDIGL+ P GS VFA+
Sbjct: 61 AHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQ 119
Query: 122 KGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKL 181
+GA+DAGL++PH+ ++ + R RG HIAEY L+E D L
Sbjct: 120 EGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEP-----------LYSGDFDAADL 168
Query: 182 PEHFDEVKARIIE 194
PEHFDE++ +++
Sbjct: 169 PEHFDELRETLLD 181
>gb|AAK41000.1| LSU ribosomal protein L18AB (rpl18AB) [Sulfolobus solfataricus]
Length = 199
Score = 195 bits (490), Expect = 4e-49
Identities = 99/200 (49%), Positives = 134/200 (66%), Gaps = 5/200 (2%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
+A+GP Y+V RRRREGKTNY KR + S + R +VR + + I QI DPKGD +
Sbjct: 4 LANGPNYKVKPRRRREGKTNYYKRYVYVISKQTRFIVRITNKYVIVQIAKIDPKGDIMIA 63
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+ EL + FGWKG NTP+AYL G L G +A K G+ E + DIGLH P +G+ VF V
Sbjct: 64 SAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIKRGVTECVADIGLHVPSKGNRVFYV 123
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
+KGA+DAGL +P +I E+ RI+GEHIA+YA LK ++ + + + F YL++GL+PE
Sbjct: 124 IKGAIDAGLKIPIG-DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPEN 182
Query: 181 LPEHFDEVKARIIEKFESEG 200
LP HF+E I+ K +S G
Sbjct: 183 LPSHFEE----ILNKIKSSG 198
>sp|Q9UX88|RL18_SULSO 50S RIBOSOMAL PROTEIN L18P >gi|6015777|emb|CAB57604.1| (Y18930)
ribosomal protein L18 (HMAL18) [Sulfolobus solfataricus]
Length = 199
Score = 195 bits (490), Expect = 4e-49
Identities = 99/200 (49%), Positives = 134/200 (66%), Gaps = 5/200 (2%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
+A+GP Y+V RRRREGKTNY KR + S + R +VR + + I QI DPKGD +
Sbjct: 4 LANGPNYKVKPRRRREGKTNYYKRYVYVISKQTRFIVRITNKYVIVQIAKIDPKGDIMIA 63
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+ EL + FGWKG NTP+AYL G L G +A K G+ E + DIGLH P +G+ VF V
Sbjct: 64 SAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIKRGVTECVADIGLHVPSKGNRVFYV 123
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
+KGA+DAGL +P +I E+ RI+GEHIA+YA LK ++ + + + F YL++GL+PE
Sbjct: 124 IKGAIDAGLKIPIG-DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGLNPEN 182
Query: 181 LPEHFDEVKARIIEKFESEG 200
LP HF+E I+ K +S G
Sbjct: 183 LPSHFEE----ILNKIKSSG 198
>gb|AAG19955.1| (AE005077) 50S ribosomal protein L18P; Rpl18p [Halobacterium sp.
NRC-1]
Length = 183
Score = 191 bits (480), Expect = 6e-48
Identities = 101/194 (52%), Positives = 127/194 (65%), Gaps = 12/194 (6%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
MA GPRY+VP RRRRE +T+Y +RL+LLKSGKPRLV RKS H AQ++ P GD T+
Sbjct: 1 MATGPRYKVPMRRRREVRTDYHQRLRLLKSGKPRLVARKSNKHVTAQLVTTGPDGDETVA 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
SAH+ +L +GW GN P+AYL GLL G +A AG+EEA+LDIGL+ GS VFA+
Sbjct: 61 SAHSSDLDA-YGWAAPTGNLPAAYLTGLLAGQRAVDAGVEEAVLDIGLNTATPGSKVFAI 119
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
+GA+DAGL+VPH+ + + R RGEHIAEYA L DE + F D
Sbjct: 120 QEGAIDAGLDVPHNDSVLADWSRTRGEHIAEYAESL---DEPLYSGDF--------DATA 168
Query: 181 LPEHFDEVKARIIE 194
LP HFDE + I+E
Sbjct: 169 LPAHFDETREAIME 182
>sp|O05640|RL18_SULAC 50S RIBOSOMAL PROTEIN L18P >gi|2052265|emb|CAA69096.1| (Y07778)
ribosomal protein L18 [Sulfolobus acidocaldarius]
Length = 197
Score = 180 bits (452), Expect = 1e-44
Identities = 87/194 (44%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Query: 1 MAHGPRYRVPFRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLV 60
M GP YR+ FRRRREGKT+Y R + + R V R + + I + +D KGD +
Sbjct: 1 MTQGPNYRIKFRRRREGKTDYYTRYTYVINNAIRFVPRLTNKYVIVSVSKFDQKGDIMIA 60
Query: 61 SAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAV 120
AH+ EL++ +GWKG NTP+AYL G L G +A K+G++ A+ DIGL PV+G +FAV
Sbjct: 61 YAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVKSGVKAAVSDIGLFVPVKGGRIFAV 120
Query: 121 LKGAVDAGLNVPHSPEIFPEDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEK 180
+KGA+DAGL VP ++ R+ G HI+ YA+ LK +++E + + F Y+++GLDP
Sbjct: 121 IKGAIDAGLKVPVG-DLGKLKDRVNGSHISAYAQKLKNENQELYNKLFSSYIQRGLDPVL 179
Query: 181 LPEHFDEVKARIIE 194
LP+HF+EV +I E
Sbjct: 180 LPQHFEEVLNKIKE 193
>sp|O74306|RL5B_SCHPO 60S RIBOSOMAL PROTEIN L5-B >gi|7490045|pir||T39325 60s ribosomal
protein l5 - fission yeast (Schizosaccharomyces pombe)
>gi|3560200|emb|CAA20691.1| (AL031528) 60s ribosomal
protein l5. [Schizosaccharomyces pombe]
Length = 294
Score = 118 bits (293), Expect = 5e-26
Identities = 85/244 (34%), Positives = 117/244 (47%), Gaps = 50/244 (20%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+ +RRRREGKT+Y R +L+ K RLVVR S QI+ GD
Sbjct: 15 RYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA--------KKAGIEE--------- 101
L AH+ EL R +G K N +AY GLL+ +A K G+ E
Sbjct: 75 LAHAHSSELPR-YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTE 133
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP---------EDY 142
LD+GL GS VF +KGA D GL +PHSP FP +D
Sbjct: 134 AIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 193
Query: 143 RIR----GEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE--KF 196
+R G H+AEY ML + DEE++++QF G + G++ ++L + + E A+I E F
Sbjct: 194 TLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSF 253
Query: 197 ESEG 200
+ G
Sbjct: 254 QKSG 257
>sp|P52822|RL5A_SCHPO 60S RIBOSOMAL PROTEIN L5-A >gi|7490044|pir||T38758 60s ribosomal
protein L5 - fission yeast (Schizosaccharomyces pombe)
>gi|2414652|emb|CAB16596.1| (Z99296) 60s ribosomal
protein L5 [Schizosaccharomyces pombe]
Length = 294
Score = 118 bits (293), Expect = 5e-26
Identities = 85/244 (34%), Positives = 117/244 (47%), Gaps = 50/244 (20%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+ +RRRREGKT+Y R +L+ K RLVVR S QI+ GD
Sbjct: 15 RYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA--------KKAGIEE--------- 101
L AH+ EL R +G K N +AY GLL+ +A K G+ E
Sbjct: 75 LAHAHSSELPR-YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTE 133
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP---------EDY 142
LD+GL GS VF +KGA D GL +PHSP FP +D
Sbjct: 134 AIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 193
Query: 143 RIR----GEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE--KF 196
+R G H+AEY ML + DEE++++QF G + G++ ++L + + E A+I E F
Sbjct: 194 TLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSF 253
Query: 197 ESEG 200
+ G
Sbjct: 254 QKSG 257
>sp|P49405|RL5_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L5 >gi|7504154|pir||T22631
hypothetical protein F54C9.5 - Caenorhabditis elegans
>gi|3877501|emb|CAA90251.1| (Z49967) contains similarity
to Pfam domain: PF00861 (Ribosomal L18p/L5e family),
Score=275.1, E-value=2.9e-79, N=1~cDNA EST EMBL:Z14596
comes from this gene~cDNA EST EMBL:Z14652 comes from
this gene~cDNA EST CEMSB34FB comes from this gene~cDNA
EST CEM>
Length = 293
Score = 118 bits (293), Expect = 5e-26
Identities = 86/237 (36%), Positives = 122/237 (51%), Gaps = 47/237 (19%)
Query: 2 AHGPRYRVPFRRRREGKTNY--RKRLKL-----LKSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V RRRREGKT+Y RKRL + + K RL+VR + +AQ+ +
Sbjct: 11 AYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLL--------IGYKAKKAGIEE----- 101
GD + SA++ EL R +G K N +AY GLL IG + G EE
Sbjct: 71 GDVVVASAYSHELPR-YGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGED 129
Query: 102 -------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF------PEDY 142
A+LDIGL GS +FAV+KG D G+NVPHS F ++Y
Sbjct: 130 YNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEY 189
Query: 143 -------RIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
RI G+H+A+Y LKE+DE++++RQF +L GL+ + L + +V + I
Sbjct: 190 NAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAI 246
>sp|O22608|RL5_DUNSA 60S RIBOSOMAL PROTEIN L5 >gi|7440744|pir||T08009 probable ribosomal
protein L5 - green alga (Dunaliella salina)
>gi|2599104|gb|AAB84056.1| (AF028833) 60S ribosomal
protein [Dunaliella salina]
Length = 271
Score = 113 bits (281), Expect = 1e-24
Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 48/235 (20%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+V +RRRR+GKT+YR RL+L++ K RLVVR S + QI+ +GD
Sbjct: 15 RYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVV 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAKKAGIEE----- 101
+ +A+++EL ++G K N +AY +GLL+ YK ++ E
Sbjct: 75 MAAAYSKEL-PNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVE 133
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP------------ 139
+LD GL GS VFA +KGA+D GL++PH+ + F
Sbjct: 134 PVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYADKKLDTEVL 193
Query: 140 EDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
+ Y I G H+AEY ++E++ EK++ F Y+E ++P+ + + + EV A+I E
Sbjct: 194 QKY-IYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRE 247
>gb|AAF45418.2| (AE002910) yip6 gene product [alt 1] [Drosophila melanogaster]
>gi|10729506|gb|AAG22457.1| (AE002910) yip6 gene product
[alt 2] [Drosophila melanogaster]
Length = 299
Score = 111 bits (276), Expect = 5e-24
Identities = 79/234 (33%), Positives = 114/234 (47%), Gaps = 48/234 (20%)
Query: 6 RYRVPFRRRREGKTNY--RKRLKL-----LKSGKPRLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+V FRRRREGKT+Y RKRL + K RL+VR S QI +GDR
Sbjct: 15 RYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRV 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEE---------------- 101
+ +A++ EL + +G + N +AY GLL+ + K G++
Sbjct: 75 VCAAYSHELPK-YGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVE 133
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP------------ 139
LD+GL G+ VF +KGAVD GLN+PHS + FP
Sbjct: 134 PVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNAD 193
Query: 140 -EDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
I G+H+A+Y R L+E+DEE F+RQF Y++ G+ + L + + + I
Sbjct: 194 VHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAI 247
>sp|O44248|RL5_ANOGA 60S RIBOSOMAL PROTEIN L5 >gi|2809379|gb|AAB97731.1| (AF002238)
ribosomal protein L5 [Anopheles gambiae]
Length = 327
Score = 110 bits (272), Expect = 1e-23
Identities = 82/234 (35%), Positives = 113/234 (48%), Gaps = 48/234 (20%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+V FRRRREGKT+Y R +L+ + K RL+VR S QI +GDR
Sbjct: 15 RYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYRRIEGDRI 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK--------AGIEE--------- 101
+ +A++ EL R +G K N +AY GLL+ + + AG +
Sbjct: 75 VCAAYSHELPR-YGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVE 133
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-----------E 140
LD+GL GS VF +KGAVD GLN+PHS + FP E
Sbjct: 134 PVDEGPAAFRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAE 193
Query: 141 DYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
+R I G H+A Y R L+E+DEE F+RQF Y+ G+ + + + A I
Sbjct: 194 MHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASI 247
>dbj|BAB11380.1| (AB016876) 60S ribosomal protein L5 [Arabidopsis thaliana]
Length = 301
Score = 108 bits (266), Expect = 7e-23
Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 47/237 (19%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRR+GKT+YR R++L+ K R VVR + +AQI+
Sbjct: 11 AYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIA 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE----- 100
GD SA+ EL +G N +AY GLL+ + K +E
Sbjct: 71 GDIVKASAYAHEL-PQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED 129
Query: 101 ------------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPEDYR----- 143
A+LD+GL G+ VF LKGA+D GL++PHS + F ++
Sbjct: 130 FSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQL 189
Query: 144 --------IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
I G H++ Y ++L E + EK + F Y++KG++ E + E + +V A I
Sbjct: 190 DAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAI 246
>pir||S39486 ribosomal protein L5 - rice
Length = 294
Score = 107 bits (265), Expect = 9e-23
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 47/237 (19%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPK 54
A+ R++V F+RRR+GKT+YR R++L K R VVR + AQI+
Sbjct: 12 AYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIA 71
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKA-GIEE------------ 101
GD + +A++ EL R +G + N +AY GLL+ + K G+++
Sbjct: 72 GDIVMAAAYSHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGED 130
Query: 102 -------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP---EDYR-- 143
A+LD+GL G+ VF LKGA+D GL++PHS + F +D +
Sbjct: 131 YYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQL 190
Query: 144 --------IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
I G H+A+Y R + E++ EKF+ F YL+KG+D + + + +V A I
Sbjct: 191 DSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAI 247
>sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5
Length = 304
Score = 107 bits (265), Expect = 9e-23
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 47/237 (19%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPK 54
A+ R++V F+RRR+GKT+YR R++L K R VVR + AQI+
Sbjct: 12 AYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIA 71
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKKA-GIEE------------ 101
GD + +A++ EL R +G + N +AY GLL+ + K G+++
Sbjct: 72 GDIVMAAAYSHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGED 130
Query: 102 -------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP---EDYR-- 143
A+LD+GL G+ VF LKGA+D GL++PHS + F +D +
Sbjct: 131 YYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQL 190
Query: 144 --------IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
I G H+A+Y R + E++ EKF+ F YL+KG+D + + + +V A I
Sbjct: 191 DSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAI 247
>sp|P09895|RL5_RAT 60S RIBOSOMAL PROTEIN L5 >gi|71149|pir||R5RTL5 ribosomal protein
L5, cytosolic [validated] - rat
>gi|57125|emb|CAA29506.1| (X06148) ribosomal protein L5
(AA 1-297) [Rattus norvegicus]
Length = 297
Score = 107 bits (264), Expect = 1e-22
Identities = 80/251 (31%), Positives = 123/251 (48%), Gaps = 50/251 (19%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAK------- 95
GD + +A+ EL + +G K N +AY GLL+ Y+ +
Sbjct: 71 GDMIVCAAYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDE 129
Query: 96 --------KAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
+ G LD GL G+ VF LKGAVD GL++PHS + FP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E +R I G+++A+Y R L E+DE+ +++QF Y++ + P+ + E + + A I E
Sbjct: 190 FNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRE 249
Query: 195 K--FESEGARE 203
+E + RE
Sbjct: 250 NPVYEKKPKRE 260
>sp|P22451|RL5_CHICK 60S RIBOSOMAL PROTEIN L5 >gi|345694|pir||JC1308 ribosomal protein
L5 - chicken >gi|62983|emb|CAA40335.1| (X57016)
ribosomal protein L5 [Gallus gallus]
>gi|391647|dbj|BAA01581.1| (D10737) ribosomal protein L5
[Gallus gallus]
Length = 297
Score = 107 bits (264), Expect = 1e-22
Identities = 77/238 (32%), Positives = 117/238 (48%), Gaps = 48/238 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAK------- 95
GD + +A+ EL + +G K N +AY GLL+ Y+ +
Sbjct: 71 GDMIVCAAYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDE 129
Query: 96 --------KAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
K G LD GL G+ VF LKGAVD GL++PHS + FP
Sbjct: 130 YNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
E +R I G+++A+Y R L E+DE+ +++QF Y++ + P+ + E + + A I
Sbjct: 190 FNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAI 247
>gi|6325126 Ribosomal protein L5 (L1a)(YL3); Rpl5p [Saccharomyces cerevisiae]
>gi|1071983|pir||S42144 ribosomal protein L5.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|172424|gb|AAA34979.1| (L01796) ribosomal protein L1
[Saccharomyces cerevisiae] >gi|1244783|gb|AAB68228.1|
(U43703) Lpi14p [Saccharomyces cerevisiae]
Length = 297
Score = 106 bits (262), Expect = 2e-22
Identities = 82/229 (35%), Positives = 108/229 (46%), Gaps = 48/229 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPK 54
A+ R++ PFRRRREGKT+Y +R +L+ K RLVVR + I QII
Sbjct: 11 AYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTIT 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEEA----------- 102
GD L +A++ EL R +G N +AY GLLI + +K G++E
Sbjct: 71 GDVVLAAAYSHELPR-YGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEY 129
Query: 103 ---------------ILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHS-----------PE 136
LDIGL G+ VF LKGA D GL VPHS E
Sbjct: 130 ELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEE 189
Query: 137 IFPEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPE 183
I PE R I G H+++Y L + DEE+F F GYL +D + L +
Sbjct: 190 IDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLED 238
>gb|AAB05674.1| (U48270) ribosomal protein L5 [Schizosaccharomyces pombe]
Length = 293
Score = 106 bits (262), Expect = 2e-22
Identities = 82/244 (33%), Positives = 114/244 (46%), Gaps = 51/244 (20%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+ +RRR EGK +Y R +L+ K RLVVR S QI+ GD
Sbjct: 15 RYQTKYRRR-EGKIDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYV 73
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA--------KKAGIEE--------- 101
L AH+ EL R +G K N +AY GLL+ +A K G+ E
Sbjct: 74 LAHAHSSELPR-YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTE 132
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP---------EDY 142
LD+GL GS VF +KGA D GL +PHSP FP +D
Sbjct: 133 AIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 192
Query: 143 RIR----GEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE--KF 196
+R G H+AEY ML + DEE++++Q G + G++ ++L + + E A+I E F
Sbjct: 193 TLRKYIYGGHVAEYMEMLIDDDEERYQKQSSGLIADGIESDQLEDIYAEAYAKIREDPSF 252
Query: 197 ESEG 200
+ G
Sbjct: 253 QKSG 256
>sp|Q26481|RL5_STYCL 60S RIBOSOMAL PROTEIN L5 >gi|1374957|gb|AAC05598.1| (L78668)
ribosomal protein L5 [Styela clava]
Length = 295
Score = 106 bits (262), Expect = 2e-22
Identities = 76/240 (31%), Positives = 119/240 (48%), Gaps = 48/240 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V ++RRR+GKT+Y R +L+ + K R++VR + + QI +
Sbjct: 11 AYFKRYQVKYKRRRQGKTDYFARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEE------------ 101
GD + +A+ EL R +G K N +AY GLL+ + K G++E
Sbjct: 71 GDVVICAAYAHELPR-YGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDE 129
Query: 102 --------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
A LD+GL G+ VF +KGA D GL++PHS + FP
Sbjct: 130 FYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGD 189
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E +R I G H++ Y + L+E+DEE F+RQF Y++ G+ + + E + + A I E
Sbjct: 190 FSAEVHRSHIFGGHVSNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIRE 249
>gi|11421839 ribosomal protein L5 [Homo sapiens]
Length = 307
Score = 106 bits (262), Expect = 2e-22
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 48/240 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 21 AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 80
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAK------- 95
GD + +A+ EL + +G K N +AY GLL+ Y+ +
Sbjct: 81 GDMIVCAAYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 139
Query: 96 --------KAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
+ G LD GL G+ VF LKGAVD GL++PHS + FP
Sbjct: 140 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 199
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E +R I G+++A+Y R L E+DE+ +++QF Y++ + P+ + E + + A I E
Sbjct: 200 FNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRE 259
>gb|AAG39281.1|AF113210_1 (AF113210) MSTP030 [Homo sapiens]
Length = 297
Score = 106 bits (262), Expect = 2e-22
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 48/240 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAK------- 95
GD + +A+ EL + +G K N +AY GLL+ Y+ +
Sbjct: 71 GDMIVCAAYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 96 --------KAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
+ G LD GL G+ VF LKGAVD GL++PHS + FP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E +R I G+++A+Y R L E+DE+ +++QF Y++ + P+ + E + + A I E
Sbjct: 190 FNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRE 249
>sp|O59953|RL5_NEUCR 60S RIBOSOMAL PROTEIN L5 >gi|3003044|gb|AAC09000.1| (AF054907)
putative 5S rRNA binding ribosomal protein [Neurospora
crassa]
Length = 301
Score = 106 bits (261), Expect = 3e-22
Identities = 81/257 (31%), Positives = 121/257 (46%), Gaps = 57/257 (22%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPK 54
A+ R++ ++RRREGKT+Y R +L+ K RLVVR + I QI+ +
Sbjct: 11 AYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEIT 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEE------------ 101
GD+ SA++ EL + +G + N +AY GLL+ + KK G++E
Sbjct: 71 GDKVFASAYSHEL-KAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEY 129
Query: 102 -----------------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP----- 139
A LD+GL G+ VF +KGA D G+ +PHS FP
Sbjct: 130 KLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDME 189
Query: 140 ---------EDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKA 190
+ Y I G H+AEY L + DEE+++ QF Y+E L+ + L + + E A
Sbjct: 190 SEELDAETLKKY-IFGGHVAEYMETLADDDEERYKSQFNRYIEDDLEADGLEDLYAEAHA 248
Query: 191 RIIE----KFESEGARE 203
I E K ESE ++
Sbjct: 249 AIREDPFKKAESEAPKK 265
>sp|P15126|RL5B_XENLA 60S RIBOSOMAL PROTEIN L5B >gi|85844|pir||B33823 ribosomal protein
L5b - African clawed frog >gi|214673|gb|AAA49939.1|
(M29033) L5b ribosomal protein [Xenopus laevis]
Length = 296
Score = 105 bits (260), Expect = 4e-22
Identities = 78/240 (32%), Positives = 120/240 (49%), Gaps = 48/240 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEEAI---------- 103
GD + +A+ EL + +G K N +AY GLL+ + K G+++
Sbjct: 71 GDMIVCAAYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDE 129
Query: 104 ----------------LDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF--------- 138
LD GL G+ VF LKGAVD GL++PHS + F
Sbjct: 130 YNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 139 --PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
PE +R I ++IAEY R+L E+DE+ +++QF Y++ G+ ++L + + + A I E
Sbjct: 190 FNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRE 249
>sp|P26321|RL5_YEAST 60S RIBOSOMAL PROTEIN L5 (L1) (YL3) (RIBOSOMAL 5S RNA-BINDING
PROTEIN) >gi|173232|gb|AAA35234.1| (M65056) 5S ribosomal
RNA binding-protein [Saccharomyces cerevisiae]
>gi|173235|gb|AAA35236.1| (M94864) 5S ribosomal RNA
binding-protein [Saccharomyces cerevisiae]
Length = 297
Score = 105 bits (260), Expect = 4e-22
Identities = 83/229 (36%), Positives = 106/229 (46%), Gaps = 48/229 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPK 54
A+ R++ PFRRRREGKT+Y +R +L+ K RLVVR + I QII
Sbjct: 11 AYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTIT 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLI--------GYKAKKAGIEEA---- 102
GD L +A++ EL R +G N +AY GLLI G G+EE
Sbjct: 71 GDVVLAAAYSHELPR-YGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEY 129
Query: 103 ---------------ILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHS-----------PE 136
LDIGL G+ VF LKGA D GL VPHS E
Sbjct: 130 ELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEE 189
Query: 137 IFPEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPE 183
I PE R I G H+++Y L + DEE+F F GYL +D + L +
Sbjct: 190 IDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLED 238
>sp|O65353|RL5_HELAN 60S RIBOSOMAL PROTEIN L5 >gi|7440750|pir||T12615 ribosomal protein
L5 - common sunflower >gi|3153904|gb|AAC17448.1|
(AF066077) RPL5A-related protein [Helianthus annuus]
Length = 297
Score = 105 bits (259), Expect = 5e-22
Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 48/223 (21%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+V F+RRREGKT+Y R +L+ + K RLVVR S Q+ +GD+
Sbjct: 15 RYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKI 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK-AKKAGIEE---------------- 101
L +A+ EL +G K N +AY GLL+ K + G+++
Sbjct: 75 LCAAYAHEL-PQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVK 133
Query: 102 ----------AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP------------ 139
LD+GL G+ VF +KGAVD GLN+ HS + FP
Sbjct: 134 PVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNAD 193
Query: 140 -EDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKL 181
I G+H+AEY R L E+D+E ++RQF Y++ GL+ + +
Sbjct: 194 VHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAI 236
>sp|P15125|RL5A_XENLA 60S RIBOSOMAL PROTEIN L5A >gi|85843|pir||A33823 ribosomal protein
L5a - African clawed frog >gi|214754|gb|AAA49952.1|
(M29032) L5a ribosomal protein [Xenopus laevis]
Length = 296
Score = 104 bits (257), Expect = 8e-22
Identities = 76/240 (31%), Positives = 120/240 (49%), Gaps = 48/240 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEEAI---------- 103
GD + +A+ EL + +G K N +AY GLL+ + K G+++
Sbjct: 71 GDMIVCAAYAHELPK-YGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDE 129
Query: 104 ----------------LDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF--------- 138
LD GL G+ VF LKGAVD GL++PHS + F
Sbjct: 130 YNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 139 --PEDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
PE +R I +++AEY R+L E+DE+ +++QF Y++ G+ +++ + + + A I E
Sbjct: 190 FNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRE 249
>gi|4506655 ribosomal protein L5 [Homo sapiens] >gi|1173054|sp|P46777|RL5_HUMAN
60S RIBOSOMAL PROTEIN L5 >gi|1362932|pir||S55912
ribosomal protein L5, cytosolic - human
>gi|550013|gb|AAA85654.1| (U14966) ribosomal protein L5
[Homo sapiens] >gi|1096938|prf||2113200A ribosomal
protein L5 [Homo sapiens]
Length = 297
Score = 104 bits (257), Expect = 8e-22
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 48/240 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAK------- 95
GD + + + EL + +G K N +AY GLL+ Y+ +
Sbjct: 71 GDMIVCARYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDE 129
Query: 96 --------KAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
+ G LD GL G+ VF LKGAVD GL++PHS + FP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E +R I G+++A+Y R L E+DE+ +++QF Y++ + P+ + E + + A I E
Sbjct: 190 FNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRE 249
>emb|CAC12376.1| (AL445067) probable 50S ribosomal protein L18 [Thermoplasma
acidophilum]
Length = 163
Score = 104 bits (256), Expect = 1e-21
Identities = 59/158 (37%), Positives = 89/158 (55%), Gaps = 7/158 (4%)
Query: 11 FRRRREGKTNYRKRLKLLKSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRD 70
F+R+ G T+Y KRLKLLKS + R +VR + IAQ+ Y GDR L + + L +
Sbjct: 6 FKRKEAGITDYSKRLKLLKSREKRFIVRITGKGVIAQVAEYSDIGDRILFTVTDKTLAK- 64
Query: 71 FGWKGHCGNTPSAYLLGLLIGYKAKKAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLN 130
+G N YL+G + G +++K G+E A+LD G +G + A LKG DAG+
Sbjct: 65 YGVDLRGNNIQVCYLVGYIAGIESEKNGVESAVLDTGRRKFRKGGRIAACLKGFTDAGIE 124
Query: 131 VPHSPEIFPEDYRIRGEH------IAEYARMLKEQDEE 162
VPH ++FP+ RI G+H I+E + K+ +E+
Sbjct: 125 VPHGEDVFPDKKRIDGKHLKSPVKISEIVKNFKKMEEK 162
>sp|O76190|RL5_BOMMO 60S RIBOSOMAL PROTEIN L5 >gi|3282245|gb|AAC24960.1| (AF008229)
ribosomal protein L5 [Bombyx mori]
Length = 299
Score = 103 bits (254), Expect = 2e-21
Identities = 75/223 (33%), Positives = 110/223 (48%), Gaps = 48/223 (21%)
Query: 6 RYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPKGDRT 58
RY+V F+RRREGKT+Y R +L+ + K RL+VR S Q+ +GD
Sbjct: 15 RYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI 74
Query: 59 LVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYK-AKKAGIE----------------- 100
+ +A++ EL R +G K N +AY GLL+ + ++ G++
Sbjct: 75 VCAAYSHELPR-YGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVE 133
Query: 101 ---------EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-----------E 140
LD+GL G VF +KGAVD GLNVPHS + FP E
Sbjct: 134 PVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAE 193
Query: 141 DYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKL 181
+R I G H+AEY R L++ DE+ F+RQF Y++ G+ + +
Sbjct: 194 VHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAI 236
>gb|AAA42074.1| (M17419) ribosomal protein L5 [Rattus norvegicus]
Length = 296
Score = 102 bits (253), Expect = 2e-21
Identities = 80/251 (31%), Positives = 123/251 (48%), Gaps = 51/251 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V FRRRREGKT+Y R +L+ + K R++VR + I QI +
Sbjct: 11 AYFKRYQVRFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG------------YKAK------- 95
GD + +A+ EL + +G K N +AY GLL+ Y+ +
Sbjct: 71 GDMIVCAAYAHELPK-YGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDE 129
Query: 96 --------KAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
+ G LD GL G+ VF LKGAVD GL++PHS + FP
Sbjct: 130 YNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKE 189
Query: 140 ---EDYR--IRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E +R I G+++A+Y R L E+DE+ +++QF Y++ + P+ + E + + A I E
Sbjct: 190 FNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPD-MEEMYKKAHAAIRE 248
Query: 195 K--FESEGARE 203
+E + RE
Sbjct: 249 NPVYEKKPKRE 259
>gb|AAD37804.1|AF152472_1 (AF152472) ribosomal protein L5 [Myxine glutinosa]
Length = 296
Score = 99.8 bits (245), Expect = 2e-20
Identities = 73/238 (30%), Positives = 112/238 (46%), Gaps = 48/238 (20%)
Query: 2 AHGPRYRVPFRRRREGKTNYRKRLKLL-------KSGKPRLVVRKSLNHHIAQIIVYDPK 54
A+ RY+V F+RRREGKT+Y R +L+ + K RL+VR + I Q+ +
Sbjct: 11 AYFRRYQVKFKRRREGKTDYYARKRLVIQDKNKYNTPKYRLIVRITNKDIICQLAYAKIE 70
Query: 55 GDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKA-KKAGIEEAI---------- 103
GD + ++++ EL + +G N +AY GLL+ + +K GI+
Sbjct: 71 GDVIVCASYSHELPK-YGIPVGLTNYAAAYCSGLLVARRVLRKFGIDRVYEGQPEVTGDE 129
Query: 104 ----------------LDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------- 139
LD GL G+ VF VLKGAVD GL++PHS FP
Sbjct: 130 FNVESVERGPGAFTCYLDTGLARTTTGNKVFGVLKGAVDGGLSIPHSTRRFPGYDSESKE 189
Query: 140 -----EDYRIRGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
I G +I+ Y + L E DE+ +++QF Y++ + P+ L ++ ARI
Sbjct: 190 FNPDIHRQHIFGTNISNYMKQLLEDDEDLYKKQFSRYIKHAITPDMLESMYENAHARI 247
>pir||T43382 ribosomal protein L5 - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|3309000|dbj|BAA31570.1| (AB016045)
ribosomal protein L5 homolog [Schizosaccharomyces pombe]
Length = 248
Score = 97.5 bits (239), Expect = 1e-19
Identities = 72/211 (34%), Positives = 99/211 (46%), Gaps = 43/211 (20%)
Query: 32 KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG 91
K RLVVR S QI+ GD L AH+ EL R +G K N +AY GLL+
Sbjct: 2 KYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPR-YGIKWGLANWTAAYATGLLVA 60
Query: 92 YKA--------KKAGIEE-------------------AILDIGLHPPVRGSSVFAVLKGA 124
+A K G+ E LD+GL GS VF +KGA
Sbjct: 61 RRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGA 120
Query: 125 VDAGLNVPHSPEIFP---------EDYRIR----GEHIAEYARMLKEQDEEKFRRQFGGY 171
D GL +PHSP FP +D +R G H+AEY ML + DEE++++QF G
Sbjct: 121 SDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGL 180
Query: 172 LEKGLDPEKLPEHFDEVKARIIE--KFESEG 200
+ G++ ++L + + E A+I E F+ G
Sbjct: 181 IADGIESDQLEDIYAEAYAKIREDPSFQKSG 211
>gb|AAF27819.1|AF195190_1 (AF195190) yippee interacting protein 6 [Drosophila melanogaster]
Length = 177
Score = 78.4 bits (190), Expect = 6e-14
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 98 GIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-------------EDYRI 144
G LD+GL G+ VF +KGAVD GLN+PHS +FP I
Sbjct: 25 GAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVXLFPGYSAETKSFNADVHRAHI 84
Query: 145 RGEHIAEYARMLKEQDEEKFRRQFGGYLEKGLDPEKLPEHFDEVKARI 192
G+H+A+Y R L+E+DEE F+RQF Y++ G+ + L + + + I
Sbjct: 85 FGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAI 132
>gb|AAB18361.1| (U76609) ribosomal L5 protein [Homo sapiens]
Length = 145
Score = 68.7 bits (165), Expect = 5e-11
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 114 GSSVFAVLKGAVDAGLNVPHSPEIFP-----------EDYR--IRGEHIAEYARMLKEQD 160
G+ VF LKGAVD GL++PHS + FP E +R I G+++A+Y R L E+D
Sbjct: 4 GNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 63
Query: 161 EEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E+ +++QF Y++ + P+ + E + + A I E
Sbjct: 64 EDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRE 97
>pir||PC4210 ribosomal protein L5 - human (fragment)
Length = 150
Score = 68.7 bits (165), Expect = 5e-11
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 114 GSSVFAVLKGAVDAGLNVPHSPEIFP-----------EDYR--IRGEHIAEYARMLKEQD 160
G+ VF LKGAVD GL++PHS + FP E +R I G+++A+Y R L E+D
Sbjct: 9 GNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEED 68
Query: 161 EEKFRRQFGGYLEKGLDPEKLPEHFDEVKARIIE 194
E+ +++QF Y++ + P+ + E + + A I E
Sbjct: 69 EDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRE 102
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.142 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81900421
Number of Sequences: 2977
Number of extensions: 3606527
Number of successful extensions: 8621
Number of sequences better than 1.0e-10: 44
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8511
Number of HSP's gapped (non-prelim): 50
length of query: 203
length of database: 189,106,746
effective HSP length: 52
effective length of query: 151
effective length of database: 157,985,422
effective search space: 23855798722
effective search space used: 23855798722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)