BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2136 (rps5P) DE:SSU ribosomal protein S5P (rps5P)
(236 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75145 ssu ribosomal protein s5p (rps5p) PAB2136 - Pyrococc... 478 e-134
sp|O59439|RS5_PYRHO 30S RIBOSOMAL PROTEIN S5P >gi|7440186|pir||H... 467 e-131
dbj|BAB13704.1| (AB040118) ribosomal protein PfS5 [Pyrococcus fu... 279 2e-74
sp|O26131|RS5_METTH 30S RIBOSOMAL PROTEIN S5P >gi|7440187|pir||E... 255 3e-67
sp|P14036|RS5_METVA 30S RIBOSOMAL PROTEIN S5P >gi|70886|pir||R3M... 246 2e-64
sp|P54045|RS5_METJA 30S RIBOSOMAL PROTEIN S5P >gi|2119065|pir||C... 242 2e-63
gi|11499489 SSU ribosomal protein S5P (rps5P) [Archaeoglobus ful... 237 1e-61
sp|Q9YF95|RS5_AERPE 30S RIBOSOMAL PROTEIN S5P >gi|7440198|pir||A... 236 2e-61
gb|AAG19956.1| (AE005077) 30S ribosomal protein S5P; Rps5p [Halo... 233 2e-60
emb|CAC12375.1| (AL445067) probable 30S ribosomal protein S5 [Th... 230 1e-59
sp|P26815|RS5_HALMA 30S RIBOSOMAL PROTEIN S5P (HMAS5) >gi|81009|... 229 3e-59
sp|Q9UX87|RS5_SULSO 30S RIBOSOMAL PROTEIN S5P >gi|6015778|emb|CA... 227 9e-59
gb|AAK40999.1| SSU ribosomal protein S5AB (rps5AB) [Sulfolobus s... 227 9e-59
sp|O05641|RS5_SULAC 30S RIBOSOMAL PROTEIN S5P >gi|2052266|emb|CA... 215 3e-55
sp|O74892|RS2_SCHPO 40S RIBOSOMAL PROTEIN S2 >gi|7489978|pir||T4... 164 1e-39
pir||T46185 ribosomal protein S2, cytosolic [similarity] - Arabi... 162 3e-39
gi|6321315 Ribosomal protein S2 (S4) (rp12) (YS5); Rps2p [Saccha... 161 6e-39
sp|P31009|RS2_DROME 40S RIBOSOMAL PROTEIN S2 (STRINGS OF PEARLS ... 160 2e-38
sp|O43992|RS2_LEIAM 40S RIBOSOMAL PROTEIN S2 >gi|2746717|gb|AAB9... 159 3e-38
pir||S30395 ribosomal protein S2, cytosolic - fruit fly (Drosoph... 159 4e-38
sp|P51403|RS2_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S2 >gi|749768... 158 5e-38
sp|P15880|RS2_HUMAN 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN) 158 7e-38
sp|P27952|RS2_RAT 40S RIBOSOMAL PROTEIN S2 >gi|70887|pir||R3RTS2... 157 1e-37
sp|P25444|RS2_MOUSE 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN) 157 1e-37
gb|AAC04624.1| (U92699) ribosomal protein S2 [Rattus norvegicus] 157 1e-37
gb|AAC04625.1| (U92700) ribosomal protein S2 [Rattus norvegicus] 157 1e-37
sp|O18789|RS2_BOVIN 40S RIBOSOMAL PROTEIN S2 >gi|2293579|gb|AAB6... 156 2e-37
gb|AAC04621.1| (U92696) ribosomal protein S2 [Rattus norvegicus] 156 2e-37
sp|P49154|RS2_URECA 40S RIBOSOMAL PROTEIN S2 >gi|939718|gb|AAA74... 154 7e-37
sp|P49688|RS2_ARATH 40S RIBOSOMAL PROTEIN S2 >gi|2335095|gb|AAC0... 154 7e-37
dbj|BAA88264.1| (AB008017) similar to ribosomal protein S2 [Arab... 153 2e-36
emb|CAB61941.1| (AL031671) dJ688G8.1 (similar to RIBOSOMAL PROTE... 153 2e-36
pir||T50673 ribosomal protein S2 homolog XW6 [imported] - Arabid... 153 2e-36
gb|AAC04622.1| (U92697) ribosomal protein S2 [Rattus norvegicus] 152 3e-36
sp|P46791|RS2_CRIGR 40S RIBOSOMAL PROTEIN S2 >gi|2119066|pir||I4... 152 5e-36
sp|P27685|RS2_DICDI 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEI... 150 1e-35
gb|AAF82250.1|AC008051_1 (AC008051) Identical to gene XW6 from A... 145 5e-34
gi|4506719 ribosomal protein S2 [Homo sapiens] >gi|88570|pir||S0... 138 8e-32
gi|6678698 repeat family 3 gene [Mus musculus] >gi|91275|pir||A3... 138 8e-32
gb|AAC36525.1| (U89418) ribosomal protein S2 [Mus musculus] 129 4e-29
dbj|BAA22001.1| (AB002761) ribosomal protein S2 [Entamoeba histo... 114 9e-25
sp|Q9X1J2|RS5_THEMA 30S RIBOSOMAL PROTEIN S5 >gi|7440200|pir||C7... 100 3e-20
sp|O67563|RS5_AQUAE 30S RIBOSOMAL PROTEIN S5 >gi|7440189|pir||B7... 94 1e-18
sp|P27152|RS5_THETH 30S RIBOSOMAL PROTEIN S5 >gi|10120568|pdb|1F... 90 3e-17
pir||F81266 30S ribosomal protein S5 Cj1690c [imported] - Campyl... 88 1e-16
sp|P02357|RS5_BACST 30S RIBOSOMAL PROTEIN S5 (BS5) >gi|70883|pir... 86 4e-16
pdb|1PKP| Ribosomal Protein S5 (Prokaryotic) 86 4e-16
pdb|1DV4|E Chain E, Partial Structure Of 16s Rna Of The Small Ri... 86 4e-16
pdb|1EG0|B Chain B, Fitting Of Components With Known Structure I... 86 4e-16
sp|P56012|RS5_HELPY 30S RIBOSOMAL PROTEIN S5 >gi|7440194|pir||F6... 85 6e-16
pir||A82917 ribosomal protein S5 UU248 [imported] - Ureaplasma u... 84 1e-15
pir||D75314 ribosomal protein S5 - Deinococcus radiodurans (stra... 83 3e-15
gb|AAB59115.1| (M31102) spc ORF1; S5 [Bacillus subtilis] 82 5e-15
sp|P21467|RS5_BACSU 30S RIBOSOMAL PROTEIN S5 (BS5) >gi|7428657|p... 82 5e-15
sp|Q50301|RS5_MYCPN 30S RIBOSOMAL PROTEIN S5 >gi|2127657|pir||S6... 82 5e-15
sp|P10128|RS5_MYCCA 30S RIBOSOMAL PROTEIN S5 >gi|70885|pir||R3YM... 82 6e-15
sp|Q9Z9J7|RS5_BACHD 30S RIBOSOMAL PROTEIN S5 >gi|11276537|pir||T... 81 1e-14
sp|Q9XD19|RS5_LEPIN 30S RIBOSOMAL PROTEIN S5 >gi|5163221|gb|AAD4... 81 1e-14
gi|11465764 30S ribosomal protein S5 [Porphyra purpurea] >gi|171... 79 4e-14
sp|P47414|RS5_MYCGE 30S RIBOSOMAL PROTEIN S5 >gi|1361835|pir||F6... 79 4e-14
gi|11467331 ribosomal protein S5 [Cyanophora paradoxa] >gi|13396... 79 5e-14
gi|11465438 unknown; 30S ribosomal protein S5 [Cyanidium caldari... 78 7e-14
gi|11467733 ribosomal protein S5 [Guillardia theta] >gi|3914872|... 77 2e-13
sp|O52349|RS5_MYCGA 30S RIBOSOMAL PROTEIN S5 >gi|2766520|gb|AAB9... 76 4e-13
sp|O24705|RS5_SYNP6 30S RIBOSOMAL PROTEIN S5 >gi|2446906|dbj|BAA... 73 2e-12
emb|CAB82087.1| (AL161803) 30S ribosomal protein S5 [Streptomyce... 73 3e-12
pir||S50003 ribosomal protein S5 - Streptomyces coelicolor 72 5e-12
sp|P73304|RS5_SYNY3 30S RIBOSOMAL PROTEIN S5 >gi|7440195|pir||S7... 72 5e-12
sp|O54299|RS5_SALTY 30S RIBOSOMAL PROTEIN S5 >gi|2780218|emb|CAA... 72 5e-12
sp|P46790|RS5_STRCO 30S RIBOSOMAL PROTEIN S5 >gi|2924290|emb|CAA... 72 5e-12
sp|P02356|RS5_ECOLI 30S RIBOSOMAL PROTEIN S5 >gi|7428656|pir||R3... 71 1e-11
sp|P57574|RS5_BUCAI 30S RIBOSOMAL PROTEIN S5 >gi|10039166|dbj|BA... 71 2e-11
sp|P44374|RS5_HAEIN 30S RIBOSOMAL PROTEIN S5 >gi|1075274|pir||D6... 70 2e-11
pir||E82057 ribosomal protein S5 VC2579 [imported] - Vibrio chol... 70 2e-11
emb|CAA63650.1| (X93159) ribosomal protein S5 [Spinacia oleracea] 69 4e-11
sp|P33105|RS5_MICLU 30S RIBOSOMAL PROTEIN S5 >gi|322077|pir||S29... 69 5e-11
gi|11467454 30S ribosomal protein S5 [Odontella sinensis] >gi|13... 69 5e-11
sp|O83236|RS5_TREPA 30S RIBOSOMAL PROTEIN S5 >gi|7440192|pir||H7... 69 5e-11
>pir||D75145 ssu ribosomal protein s5p (rps5p) PAB2136 - Pyrococcus abyssi
(strain Orsay) >gi|5457753|emb|CAB49243.1| (AJ248284)
SSU ribosomal protein S5P (rps5P) [Pyrococcus abyssi]
Length = 236
Score = 478 bits (1218), Expect = e-134
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR 60
MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR
Sbjct: 1 MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR 60
Query: 61 ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN
Sbjct: 61 ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
Query: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI
Sbjct: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
Query: 181 QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPASFTLE 236
QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPASFTLE
Sbjct: 181 QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPASFTLE 236
>sp|O59439|RS5_PYRHO 30S RIBOSOMAL PROTEIN S5P >gi|7440186|pir||H71184 probable
ribosomal protein S5 - Pyrococcus horikoshii
>gi|3258188|dbj|BAA30871.1| (AP000007) 236aa long
hypothetical 30S ribosomal protein S5 [Pyrococcus
horikoshii]
Length = 236
Score = 467 bits (1188), Expect = e-131
Identities = 227/236 (96%), Positives = 233/236 (98%)
Query: 1 MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR 60
MSQ+WKEYAKRVLDEWQP+TKLGMLVKEGQITDIHEIFR+GYQIKEPEIIDVLLPEVNAR
Sbjct: 1 MSQDWKEYAKRVLDEWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNAR 60
Query: 61 ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
ENQEI+DIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN
Sbjct: 61 ENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
Query: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
IIEIKRGCGSWECRCRRPHSVPF VEGKEGSVRV+LIPGPRGLGLVIGDVGKKILRLAGI
Sbjct: 121 IIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGI 180
Query: 181 QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPASFTLE 236
QDVWSQT GETRTTVNFAKAVFNALYNTN+VVVTPEMIERYGIVVGRAMP SFTLE
Sbjct: 181 QDVWSQTFGETRTTVNFAKAVFNALYNTNRVVVTPEMIERYGIVVGRAMPTSFTLE 236
>dbj|BAB13704.1| (AB040118) ribosomal protein PfS5 [Pyrococcus furiosus]
Length = 176
Score = 279 bits (706), Expect = 2e-74
Identities = 149/236 (63%), Positives = 162/236 (68%), Gaps = 60/236 (25%)
Query: 1 MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR 60
MSQEWKEYAKRVLDEW+PKTKLGM+VKEGQITDIHEIFR+GYQIKEP
Sbjct: 1 MSQEWKEYAKRVLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEP------------- 47
Query: 61 ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
EI+D+ +L V R+ L IG
Sbjct: 48 ---EIIDV----------------LLPEVNARENQEVLDIG------------------- 69
Query: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
SWECRCRRPHSVPF VEGKEGSVRV+LIPGPRGLGLVIGDVGKKILRLAG+
Sbjct: 70 ---------SWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGV 120
Query: 181 QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPASFTLE 236
QDVWSQT GETRTTVNFAKAVFNALYNTN+V ++PEMIER GIVVGRAMP +FTLE
Sbjct: 121 QDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPEMIERSGIVVGRAMPTTFTLE 176
>sp|O26131|RS5_METTH 30S RIBOSOMAL PROTEIN S5P >gi|7440187|pir||E69128 ribosomal protein
S5 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621060|gb|AAB84532.1| (AE000796) ribosomal
protein S2 (E.coli S5) [Methanobacterium
thermoautotrophicum]
Length = 216
Score = 255 bits (645), Expect = 3e-67
Identities = 124/211 (58%), Positives = 158/211 (74%), Gaps = 4/211 (1%)
Query: 13 LDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTV 72
++EW+P+T+LG LVKEG IT I EIF +G+ I E EIID LLP++ +E++D+ L
Sbjct: 7 MEEWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPDLE----EEVIDVNLVQ 62
Query: 73 RMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWE 132
RM SGR+V FRV+ AVGN+DGYVGLG G REVG AIRKA++ AK NII+++RGCG W
Sbjct: 63 RMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWG 122
Query: 133 CRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETR 192
C C R H+VPF V GK GSVRV LIP P G+GL IGDVGK I+RLAGI DVWS T G+T+
Sbjct: 123 CVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQ 182
Query: 193 TTVNFAKAVFNALYNTNKVVVTPEMIERYGI 223
TTVNFA+A F+AL +KV + + ++ G+
Sbjct: 183 TTVNFARATFDALKQLSKVKASEKDLKNLGV 213
>sp|P14036|RS5_METVA 30S RIBOSOMAL PROTEIN S5P >gi|70886|pir||R3MX5 ribosomal protein S5
- Methanococcus vannielii >gi|44768|emb|CAA34700.1|
(X16720) rpL15 (AA 1-225) [Methanococcus vannielii]
Length = 225
Score = 246 bits (621), Expect = 2e-64
Identities = 118/229 (51%), Positives = 162/229 (70%), Gaps = 4/229 (1%)
Query: 1 MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR 60
M+++ E K D W+PKT++G +VKEG I+DI I KG + EPEI+DVLLP++
Sbjct: 1 MAEKRAEKRKFNTDSWEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPDLE-- 58
Query: 61 ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
+++LD+ L RM SGRR R+R VGN++GYVG+G+G +EVG AIRKAI AKL+
Sbjct: 59 --EQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLS 116
Query: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
+I+++ GCGSWEC C PHS+PFT +G GSV+V+L+P PRG+GLV G+V K +L LAG+
Sbjct: 117 LIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGV 176
Query: 181 QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAM 229
+D W+ T G+TRTT NFA+A F+AL N N V PE + G+ GR +
Sbjct: 177 KDAWTTTYGDTRTTYNFAEATFDALNNLNFVRCLPEQKAKLGLTEGRVL 225
>sp|P54045|RS5_METJA 30S RIBOSOMAL PROTEIN S5P >gi|2119065|pir||C64359 ribosomal protein
S5 - Methanococcus jannaschii >gi|1591177|gb|AAB98464.1|
(U67497) SSU ribosomal protein S5P (rpsE) [Methanococcus
jannaschii]
Length = 217
Score = 242 bits (612), Expect = 2e-63
Identities = 119/217 (54%), Positives = 150/217 (68%), Gaps = 4/217 (1%)
Query: 13 LDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTV 72
+DEW+PKT +G +VKEGQITDI I I EPEI+D LLP++ +++LD+ L
Sbjct: 5 IDEWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPDLE----EKVLDVKLVQ 60
Query: 73 RMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWE 132
RM SGRR RFR VGNR+GYVG+G G +EVG AIRKAI AK NII +KRGCGSWE
Sbjct: 61 RMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWE 120
Query: 133 CRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETR 192
C C PHS+P+ GK GS ++++P P+G+GLV GDV K +L LAGI+DVW++T GETR
Sbjct: 121 CGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETR 180
Query: 193 TTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAM 229
TT NFA A F AL + N + E+ GIV GR +
Sbjct: 181 TTYNFAMATFEALKSLNFTRTMEKHKEKLGIVEGRVL 217
>gi|11499489 SSU ribosomal protein S5P (rps5P) [Archaeoglobus fulgidus]
>gi|3914901|sp|O28374|RS5_ARCFU 30S RIBOSOMAL PROTEIN
S5P >gi|7440188|pir||H69487 SSU ribosomal protein S5P
(rps5P) homolog - Archaeoglobus fulgidus
>gi|2648634|gb|AAB89344.1| (AE000971) SSU ribosomal
protein S5P (rps5P) [Archaeoglobus fulgidus]
Length = 198
Score = 237 bits (598), Expect = 1e-61
Identities = 111/195 (56%), Positives = 145/195 (73%), Gaps = 4/195 (2%)
Query: 14 DEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVR 73
++W PKTKLG LV +G+I + E +KEPEI+D+LLP++ ++L+I++ R
Sbjct: 3 EDWVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPDLE----DDVLEISMVQR 58
Query: 74 MTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWEC 133
MTDSGRR +FRV A VGNR+GYVG+G G +V AI+KAIN AKLNI +++RGCGSWEC
Sbjct: 59 MTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWEC 118
Query: 134 RCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRT 193
C HS+PF V G GSVRV LIPGP+GLG+V GDV K+++ LAG++DVWS T G+T+T
Sbjct: 119 GCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKT 178
Query: 194 TVNFAKAVFNALYNT 208
TVNFAKA + AL T
Sbjct: 179 TVNFAKATYEALKKT 193
>sp|Q9YF95|RS5_AERPE 30S RIBOSOMAL PROTEIN S5P >gi|7440198|pir||A72726 probable
ribosomal protein S5 APE0346 - Aeropyrum pernix (strain
K1) >gi|5103985|dbj|BAA79301.1| (AP000059) 218aa long
hypothetical 50S ribosomal protein S5 [Aeropyrum pernix]
Length = 218
Score = 236 bits (596), Expect = 2e-61
Identities = 120/219 (54%), Positives = 151/219 (68%), Gaps = 6/219 (2%)
Query: 1 MSQEWKEYAKRVLDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNAR 60
MSQ +E + L+ WQP+T++G LVKEG+I I EIFR+ I E EI+D LLP ++
Sbjct: 1 MSQ--REAGQVDLEAWQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPGLD-- 56
Query: 61 ENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLN 120
E++D+++ +MTD+GR RFR + VGN+DGYVGLG G R+ AI KAI AKLN
Sbjct: 57 --HEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLN 114
Query: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
II ++RGCGSWEC C HSVPFTV GK GSV V L P P+G GLV GDV K +LRLAGI
Sbjct: 115 IIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGI 174
Query: 181 QDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIE 219
DVW+ T GETRT+ NFA+A + AL NT + V + E
Sbjct: 175 SDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWAE 213
>gb|AAG19956.1| (AE005077) 30S ribosomal protein S5P; Rps5p [Halobacterium sp.
NRC-1]
Length = 212
Score = 233 bits (587), Expect = 2e-60
Identities = 115/211 (54%), Positives = 148/211 (69%), Gaps = 4/211 (1%)
Query: 14 DEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVR 73
D WQPKT+LG LV++G++ D+ E G +KEPEI+D LLP ++ E+LDI + R
Sbjct: 5 DTWQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPGLD----DEVLDINMVQR 60
Query: 74 MTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWEC 133
MTDSGRRV+FR + A+GNRDGYVG G +VG AI+KAI AKLNII++ RGCGSWEC
Sbjct: 61 MTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWEC 120
Query: 134 RCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRT 193
C RPH+V GK GSV V+L+P PRGLGL G+ + +L LAGI DVW+++ G+TRT
Sbjct: 121 GCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRT 180
Query: 194 TVNFAKAVFNALYNTNKVVVTPEMIERYGIV 224
TVNFAKA FNAL T++ V E ++
Sbjct: 181 TVNFAKATFNALRETSEARVPQHAREEREVI 211
>emb|CAC12375.1| (AL445067) probable 30S ribosomal protein S5 [Thermoplasma
acidophilum]
Length = 221
Score = 230 bits (580), Expect = 1e-59
Identities = 114/219 (52%), Positives = 146/219 (66%), Gaps = 4/219 (1%)
Query: 14 DEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVR 73
+EW PKT+LG LV GQI + E R +KE EI+D LLP + E++DI R
Sbjct: 3 EEWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPNLK----DEVIDIKRAQR 58
Query: 74 MTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWEC 133
MTDSGRR+ + + VGN DGYVGLGIG +E AIRKA+ AKLNI+EI+RGCGSWEC
Sbjct: 59 MTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWEC 118
Query: 134 RCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRT 193
C R H++PF V+GK GSVR+ L P PRG+GL +GDV + IL +AGI+D W G T+T
Sbjct: 119 GCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKT 178
Query: 194 TVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPAS 232
TVN+A AV+NAL T+KV + P ++ I G + S
Sbjct: 179 TVNYALAVYNALKETSKVRINPGIVLSTPIYSGSVVNVS 217
>sp|P26815|RS5_HALMA 30S RIBOSOMAL PROTEIN S5P (HMAS5) >gi|81009|pir||S16542 ribosomal
protein S5 [similarity] - Haloarcula marismortui
>gi|48868|emb|CAA41291.1| (X58395) ribosomal protein
[Haloarcula marismortui] >gi|243172|gb|AAB21083.1|
ribosomal protein S5 [Halobacterium marismortui,
Peptide, 212 aa] >gi|228191|prf||1718307H ribosomal
protein S5 [Haloarcula marismortui]
Length = 212
Score = 229 bits (577), Expect = 3e-59
Identities = 110/209 (52%), Positives = 145/209 (68%), Gaps = 4/209 (1%)
Query: 16 WQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMT 75
W+P+T+LG V EG+I + E G +KE E++D L+P++ E+LDI + RMT
Sbjct: 7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPDLE----DEVLDINMVQRMT 62
Query: 76 DSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRC 135
DSGRRV+FR + AVGNRDG +G G +VG AI+KAI+ AKLNII++ RGCGSWEC C
Sbjct: 63 DSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGC 122
Query: 136 RRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTV 195
RPH+V EGK GSV V+L P PRGLGL G+ +K+L LAGI+D+W+++ G TRTTV
Sbjct: 123 GRPHTVALRTEGKAGSVEVELQPAPRGLGLAGGETVRKVLELAGIEDIWTRSSGNTRTTV 182
Query: 196 NFAKAVFNALYNTNKVVVTPEMIERYGIV 224
NFAKA FNAL NT + V E+ ++
Sbjct: 183 NFAKATFNALQNTAEARVPERTFEKREVI 211
>sp|Q9UX87|RS5_SULSO 30S RIBOSOMAL PROTEIN S5P >gi|6015778|emb|CAB57605.1| (Y18930)
ribosomal protein S5 (HMAS5) [Sulfolobus solfataricus]
Length = 217
Score = 227 bits (573), Expect = 9e-59
Identities = 105/208 (50%), Positives = 147/208 (70%), Gaps = 4/208 (1%)
Query: 13 LDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTV 72
++EW+P+T +G LVKEG+I+ I E+F + I EPEI+DVLLP++ E++DI +
Sbjct: 13 IEEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLPKLK----YEVVDIKVVQ 68
Query: 73 RMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWE 132
+ TD+G R++VL +GN DGYV +G G +++ +AI+KAI AK+NII ++RGCGSW+
Sbjct: 69 KQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQ 128
Query: 133 CRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETR 192
C C PHS+PF V GK GSV V L+P P+G GLV+G V K +L AGI+D WS T GETR
Sbjct: 129 CTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETR 188
Query: 193 TTVNFAKAVFNALYNTNKVVVTPEMIER 220
TT NF +A ++ALYNT K V + + +
Sbjct: 189 TTENFVRAGYSALYNTYKFVTLQDWVRK 216
>gb|AAK40999.1| SSU ribosomal protein S5AB (rps5AB) [Sulfolobus solfataricus]
Length = 217
Score = 227 bits (573), Expect = 9e-59
Identities = 105/208 (50%), Positives = 147/208 (70%), Gaps = 4/208 (1%)
Query: 13 LDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTV 72
++EW+P+T +G LVKEG+I+ I E+F + I EPEI+DVLLP++ E++DI +
Sbjct: 13 IEEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLPKLK----YEVVDIKVVQ 68
Query: 73 RMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWE 132
+ TD+G R++VL +GN DGYV +G G +++ +AI+KAI AK+NII ++RGCGSW+
Sbjct: 69 KQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQ 128
Query: 133 CRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETR 192
C C PHS+PF V GK GSV V L+P P+G GLV+G V K +L AGI+D WS T GETR
Sbjct: 129 CTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETR 188
Query: 193 TTVNFAKAVFNALYNTNKVVVTPEMIER 220
TT NF +A ++ALYNT K V + + +
Sbjct: 189 TTENFVRAGYSALYNTYKFVTLQDWVRK 216
>sp|O05641|RS5_SULAC 30S RIBOSOMAL PROTEIN S5P >gi|2052266|emb|CAA69097.1| (Y07778)
ribosomal protein S5 [Sulfolobus acidocaldarius]
Length = 214
Score = 215 bits (543), Expect = 3e-55
Identities = 100/200 (50%), Positives = 139/200 (69%), Gaps = 4/200 (2%)
Query: 13 LDEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTV 72
L++W+P+TK+G L+KEG+I + E+F + I EPEI+DVLLP++ +I+DI +
Sbjct: 10 LEDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLPKLR----YDIVDIGIVQ 65
Query: 73 RMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWE 132
+ TD+G R++VL +GN DGY+ G G +++ +AI+KAI AK+ II ++RGCGSWE
Sbjct: 66 KQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWE 125
Query: 133 CRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETR 192
C C HS+PF V GK GSV V L+P P+G GLV+G V K L LAG++DVWS+T G T
Sbjct: 126 CTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTY 185
Query: 193 TTVNFAKAVFNALYNTNKVV 212
T NF KA + ALYNT + V
Sbjct: 186 THENFIKAAYIALYNTYRFV 205
>sp|O74892|RS2_SCHPO 40S RIBOSOMAL PROTEIN S2 >gi|7489978|pir||T41418 40s ribosomal
protein s2 - fission yeast (Schizosaccharomyces pombe)
>gi|3687463|emb|CAA21187.1| (AL031798) 40s ribosomal
protein S2 [Schizosaccharomyces pombe]
Length = 253
Score = 164 bits (410), Expect = 1e-39
Identities = 92/203 (45%), Positives = 123/203 (60%), Gaps = 7/203 (3%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK G+I I EI+ IKE +I+D LP R N E++ + +
Sbjct: 33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP----RLNDEVMKVVPVQKQ 88
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ +G+ DG+VGLGI +EV AIR AI KL+I+ I+RG W
Sbjct: 89 TRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGY--WGTA 146
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
PH+VP V GK GSV V+L+P PRG GLV V K+ L+LAGI+D ++Q+ G T+T
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTL 206
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NF KA F A T ++TP +
Sbjct: 207 GNFVKAAFAAASLTYG-ILTPNL 228
>pir||T46185 ribosomal protein S2, cytosolic [similarity] - Arabidopsis thaliana
>gi|6706420|emb|CAB66106.1| (AL133248) 40S ribosomal
protein S2 homolog [Arabidopsis thaliana]
Length = 276
Score = 162 bits (406), Expect = 3e-39
Identities = 89/203 (43%), Positives = 127/203 (61%), Gaps = 6/203 (2%)
Query: 14 DEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVR 73
++W P TKLG LVKEG+IT I +I+ +KE +IID+L V E++ I +
Sbjct: 43 EKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLL---VGPSLKDEVMKIMPVQK 99
Query: 74 MTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWEC 133
T +G+R RF+ VG+ +G+VGLG+ +EV AIR AI AKL+++ I+RG W
Sbjct: 100 QTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGY--WGN 157
Query: 134 RCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRT 193
+ +PH+VP V GK GSV V+++P PRG G+V V KK+L+ AGI DV++ + G T+T
Sbjct: 158 KIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 217
Query: 194 TVNFAKAVFNALYNTNKVVVTPE 216
NF KA F+ L T +TPE
Sbjct: 218 LGNFVKATFDCLQKTYG-FLTPE 239
>gi|6321315 Ribosomal protein S2 (S4) (rp12) (YS5); Rps2p [Saccharomyces
cerevisiae] >gi|133961|sp|P25443|RS2_YEAST 40S RIBOSOMAL
PROTEIN S2 (S4) (YS5) (RP12) (OMNIPOTENT SUPRESSOR
PROTEIN SUP44) >gi|70888|pir||R3BYS2 ribosomal protein
S2.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|172793|gb|AAA63576.1| (M59375) ribosomal protein S4
[Saccharomyces cerevisiae] >gi|1322683|emb|CAA96831.1|
(Z72645) ORF YGL123w [Saccharomyces cerevisiae]
>gi|1628451|emb|CAA63835.1| (X94106) SUP44
[Saccharomyces cerevisiae]
Length = 254
Score = 161 bits (404), Expect = 6e-39
Identities = 90/193 (46%), Positives = 122/193 (62%), Gaps = 6/193 (3%)
Query: 16 WQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMT 75
W P TKLG LVK G+IT I EIF +KE +IID LLP + E+++I + T
Sbjct: 35 WVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPGLQ----DEVMNIKPVQKQT 90
Query: 76 DSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRC 135
+G+R RF+ + VG+ +G+VGLGI +EV AIR I AKL++I I+RG W
Sbjct: 91 RAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGY--WGTNL 148
Query: 136 RRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTV 195
+PHS+ GK GSV V+LIP PRG G+V KK+L+LAG++DV++Q+ G+TRT
Sbjct: 149 GQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLE 208
Query: 196 NFAKAVFNALYNT 208
N KA F A+ NT
Sbjct: 209 NTLKAAFVAIGNT 221
>sp|P31009|RS2_DROME 40S RIBOSOMAL PROTEIN S2 (STRINGS OF PEARLS PROTEIN)
>gi|1085158|pir||S50325 ribosomal protein S2 - fruit fly
(Drosophila melanogaster) >gi|515971|gb|AAC34198.1|
(U01334) ribosomal protein S2 [Drosophila melanogaster]
>gi|515972|gb|AAA87053.1| (U01335) ribosomal protein S2
[Drosophila melanogaster] >gi|7297568|gb|AAF52822.1|
(AE003626) sop gene product [Drosophila melanogaster]
Length = 267
Score = 160 bits (400), Expect = 2e-38
Identities = 88/203 (43%), Positives = 125/203 (61%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LV+EG+I + EI+ IKE EIID L + E+L I +
Sbjct: 42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFL---GSSLKDEVLKIMPVQKQ 98
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G++GLG+ +EV AIR AI AKL+++ ++RG W +
Sbjct: 99 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGNK 156
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V GK GSV V+LIP PRG G+V V KK+L +AGI+D ++ G T T
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTL 216
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA + A+ T +TP++
Sbjct: 217 GNFAKATYAAIAKT-YAYLTPDL 238
>sp|O43992|RS2_LEIAM 40S RIBOSOMAL PROTEIN S2 >gi|2746717|gb|AAB94922.1| (AF038379)
ribosomal protein S2 [Leishmania amazonensis]
Length = 265
Score = 159 bits (398), Expect = 3e-38
Identities = 84/194 (43%), Positives = 121/194 (62%), Gaps = 4/194 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK ++T + EIF IKE +I+D L+ E + + E++ I +
Sbjct: 44 EWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAE--GKLHDEMMKIYPVQKA 101
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ VG+ DG++G+G G+EV +AIR ++ AKLNI+ ++RG W +
Sbjct: 102 TSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGY--WGNK 159
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
PH++P V GK GSV V+L+P PRG G+V V KKIL AG++DV++ + G+TRT
Sbjct: 160 IGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTH 219
Query: 195 VNFAKAVFNALYNT 208
N A F AL T
Sbjct: 220 GNLIMATFYALRKT 233
>pir||S30395 ribosomal protein S2, cytosolic - fruit fly (Drosophila
melanogaster) >gi|288084|emb|CAA48872.1| (X69120)
ribosoaml protein S2 [Drosophila melanogaster]
Length = 267
Score = 159 bits (397), Expect = 4e-38
Identities = 87/203 (42%), Positives = 125/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LV+EG+I + EI+ IKE EIID L + E+L I +
Sbjct: 42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFL---GSSLKDEVLKIMPVQKQ 98
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G++GLG+ +EV AIR AI AKL+++ ++RG W +
Sbjct: 99 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGNK 156
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V GK GSV V+LIP PRG G+V V +K+L +AGI+D ++ G T T
Sbjct: 157 IGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPRKLLTMAGIEDCYTSARGSTGTL 216
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA + A+ T +TP++
Sbjct: 217 GNFAKATYAAIAKT-YAYLTPDL 238
>sp|P51403|RS2_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S2 >gi|7497688|pir||T34184
hypothetical protein C49H3.11 - Caenorhabditis elegans
>gi|9802889|gb|AAF99899.1| (U42436) Contains similarity
to Pfam domain: PF00333 (S5), Score=258.6,
E-value=2.7e-74, N=1 [Caenorhabditis elegans]
Length = 272
Score = 158 bits (396), Expect = 5e-38
Identities = 90/203 (44%), Positives = 122/203 (59%), Gaps = 7/203 (3%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVKE +IT + EI+ IKE EIID L + E+L I+ +
Sbjct: 56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLK----DEVLKISPVQKQ 111
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ G+VGLG+ +EV AIR AI AKL ++ ++RG W +
Sbjct: 112 TTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGY--WGNK 169
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
PH+VP V GK SV V+LIP PRG G+V V KK+L +AGI+D ++ G T T
Sbjct: 170 IGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATL 229
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA + AL T +TP++
Sbjct: 230 GNFAKATYAALQRTYS-YLTPDL 251
>sp|P15880|RS2_HUMAN 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN)
Length = 293
Score = 158 bits (395), Expect = 7e-38
Identities = 90/203 (44%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 115
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 173
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 174 IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 233
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 234 GNFAKATFDAISKTYS-YLTPDL 255
>sp|P27952|RS2_RAT 40S RIBOSOMAL PROTEIN S2 >gi|70887|pir||R3RTS2 ribosomal protein
S2, cytosolic [validated] - rat
>gi|57718|emb|CAA40679.1| (X57432) ribosomal protein S2
[Rattus rattus] >gi|10179940|gb|AAG13953.1|AF283559_1
(AF283559) ribosomal protein S2 [Mus musculus]
Length = 293
Score = 157 bits (392), Expect = 1e-37
Identities = 90/203 (44%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 115
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 173
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 174 IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 233
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 234 GNFAKATFDAISKTYS-YLTPDL 255
>sp|P25444|RS2_MOUSE 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN)
Length = 293
Score = 157 bits (392), Expect = 1e-37
Identities = 90/203 (44%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 115
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 173
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 174 IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 233
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 234 GNFAKATFDAISKTYS-YLTPDL 255
>gb|AAC04624.1| (U92699) ribosomal protein S2 [Rattus norvegicus]
Length = 259
Score = 157 bits (392), Expect = 1e-37
Identities = 90/203 (44%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 25 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 81
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 82 TRAGQRTRFKAFVAIGDYNGHVGLGVECSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 139
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 140 IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 199
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 200 GNFAKATFDAISKTYS-YLTPDL 221
>gb|AAC04625.1| (U92700) ribosomal protein S2 [Rattus norvegicus]
Length = 250
Score = 157 bits (392), Expect = 1e-37
Identities = 90/203 (44%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 16 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 72
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 73 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 130
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 131 IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 190
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 191 GNFAKATFDAISKTYS-YLTPDL 212
>sp|O18789|RS2_BOVIN 40S RIBOSOMAL PROTEIN S2 >gi|2293579|gb|AAB65437.1| (AF013215)
ribosomal protein S2 [Bos taurus]
Length = 286
Score = 156 bits (391), Expect = 2e-37
Identities = 90/203 (44%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 52 EWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 108
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 166
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 167 IGKPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 226
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 227 GNFAKATFDAISKTYS-YLTPDL 248
>gb|AAC04621.1| (U92696) ribosomal protein S2 [Rattus norvegicus]
Length = 257
Score = 156 bits (391), Expect = 2e-37
Identities = 89/203 (43%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L A E+L I +
Sbjct: 23 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQ 79
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W +
Sbjct: 80 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNK 137
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+L+P PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 138 IGKPHTVPCKVTGRCGSVLVRLVPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 197
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 198 GNFAKATFDAISKTYS-YLTPDL 219
>sp|P49154|RS2_URECA 40S RIBOSOMAL PROTEIN S2 >gi|939718|gb|AAA74095.1| (U30454)
ribosomal protein S2 [Urechis caupo]
Length = 278
Score = 154 bits (386), Expect = 7e-37
Identities = 88/203 (43%), Positives = 124/203 (60%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L + E+L I +
Sbjct: 45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDAL---KDEVLKIMPVQKQ 101
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+++ ++RG W +
Sbjct: 102 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGNK 159
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V GK GSV V+LIP PRG G+V V KK+L +AGI D ++ G+T T
Sbjct: 160 IGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATL 219
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA + A+ T +TP++
Sbjct: 220 GNFAKATYAAIAATYS-YLTPDL 241
>sp|P49688|RS2_ARATH 40S RIBOSOMAL PROTEIN S2 >gi|2335095|gb|AAC02764.1| (AC002339) 40S
ribosomal protein S2 [Arabidopsis thaliana]
Length = 285
Score = 154 bits (386), Expect = 7e-37
Identities = 84/203 (41%), Positives = 123/203 (60%), Gaps = 6/203 (2%)
Query: 14 DEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVR 73
++W P TKLG LV G I I +I+ +KE +IID+L + E++ I +
Sbjct: 52 EKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDML---IGPTLKDEVMKIMPVQK 108
Query: 74 MTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWEC 133
T +G+R RF+ VG+ +G+VGLG+ +EV AIR AI AKL+++ ++RG W
Sbjct: 109 QTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGN 166
Query: 134 RCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRT 193
+ +PH+VP V GK GSV V+++P PRG G+V V KK+L+ AGI DV++ + G T+T
Sbjct: 167 KIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 226
Query: 194 TVNFAKAVFNALYNTNKVVVTPE 216
NF KA F+ L T +TPE
Sbjct: 227 LGNFVKATFDCLQKTYG-FLTPE 248
>dbj|BAA88264.1| (AB008017) similar to ribosomal protein S2 [Arabidopsis thaliana]
Length = 282
Score = 153 bits (382), Expect = 2e-36
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
+W P TKLG LV + +IT + +I+ +KE +IID L V E++ I +
Sbjct: 50 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHL---VGPTLKDEVMKIMPVQKQ 106
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ VG+ +G+VGLG+ +EV AIR AI AKL+++ ++RG W +
Sbjct: 107 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGNK 164
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V GK GSV V+++P PRG G+V V KK+L+ AGI DV++ + G T+T
Sbjct: 165 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 224
Query: 195 VNFAKAVFNALYNTNKVVVTPE 216
NF KA F+ L T +TPE
Sbjct: 225 GNFVKATFDCLQKTYG-FLTPE 245
>emb|CAB61941.1| (AL031671) dJ688G8.1 (similar to RIBOSOMAL PROTEIN S2) [Homo
sapiens]
Length = 293
Score = 153 bits (382), Expect = 2e-36
Identities = 87/194 (44%), Positives = 117/194 (59%), Gaps = 5/194 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE EIID L E+L I +
Sbjct: 59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GTSLKDEVLKIMPVQKQ 115
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+V A+G+ +G+VGLG+ +EV AIR AI AKL+I+ + RG W +
Sbjct: 116 TRAGQRTRFKVFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVCRGY--WGNK 173
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ SV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 174 IGKPHTVPCKVTGRCSSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 233
Query: 195 VNFAKAVFNALYNT 208
NFAKA F+A+ T
Sbjct: 234 GNFAKATFDAISKT 247
>pir||T50673 ribosomal protein S2 homolog XW6 [imported] - Arabidopsis thaliana
>gi|6566272|dbj|BAA88263.1| (AB008016) similar to
ribosomal protein S2 [Arabidopsis thaliana]
>gi|11034964|gb|AAG27119.1|AC082643_3 (AC082643)
ribosomal protein S2, putative [Arabidopsis thaliana]
Length = 284
Score = 153 bits (382), Expect = 2e-36
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
+W P TKLG LV + +IT + +I+ +KE +IID L V E++ I +
Sbjct: 52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHL---VGPTLKDEVMKIMPVQKQ 108
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ VG+ +G+VGLG+ +EV AIR AI AKL+++ ++RG W +
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGNK 166
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V GK GSV V+++P PRG G+V V KK+L+ AGI DV++ + G T+T
Sbjct: 167 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 226
Query: 195 VNFAKAVFNALYNTNKVVVTPE 216
NF KA F+ L T +TPE
Sbjct: 227 GNFVKATFDCLQKTYG-FLTPE 247
>gb|AAC04622.1| (U92697) ribosomal protein S2 [Rattus norvegicus]
Length = 267
Score = 152 bits (381), Expect = 3e-36
Identities = 88/203 (43%), Positives = 122/203 (59%), Gaps = 6/203 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
EW P TKLG LVK+ +I + EI+ IKE E+ID L A E+L I +
Sbjct: 33 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEVIDFFL---GASLKDEVLKIMPVQKQ 89
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+ + + RG W +
Sbjct: 90 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSTVPVWRGY--WGNK 147
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T
Sbjct: 148 IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATL 207
Query: 195 VNFAKAVFNALYNTNKVVVTPEM 217
NFAKA F+A+ T +TP++
Sbjct: 208 GNFAKATFDAISKTYS-YLTPDL 229
>sp|P46791|RS2_CRIGR 40S RIBOSOMAL PROTEIN S2 >gi|2119066|pir||I48117 ribosomal protein
S2 - Chinese hamster (fragment)
>gi|553841|gb|AAA36999.1| (L22552) ribosomal protein S2
[Cricetulus griseus]
Length = 202
Score = 152 bits (379), Expect = 5e-36
Identities = 88/200 (44%), Positives = 122/200 (61%), Gaps = 6/200 (3%)
Query: 18 PKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDS 77
P TKLG LVK+ +I + EI+ IKE EIID L A E+L I + T +
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQTRA 58
Query: 78 GRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRR 137
G+R RF+ A+G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W + +
Sbjct: 59 GQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNKIGK 116
Query: 138 PHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNF 197
PH+VP V G+ GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T NF
Sbjct: 117 PHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNF 176
Query: 198 AKAVFNALYNTNKVVVTPEM 217
AKA F+A+ T +TP++
Sbjct: 177 AKATFDAISKTYS-YLTPDL 195
>sp|P27685|RS2_DICDI 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN)
>gi|102236|pir||S22297 probable ribosomal protein S5
DdLLRep3 - slime mold (Dictyostelium discoideum)
>gi|7299|emb|CAA39744.1| (X56297) DdLLRep3
[Dictyostelium discoideum]
Length = 265
Score = 150 bits (375), Expect = 1e-35
Identities = 86/202 (42%), Positives = 123/202 (60%), Gaps = 8/202 (3%)
Query: 16 WQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMT 75
W P TKLG LV G + +IHEI+ IKE +IID L N ++ E++ I + T
Sbjct: 49 WTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFL---NLKD--EVMKIVPVQKQT 103
Query: 76 DSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRC 135
+G+R RF+ VG+ +G+VGLG+ +EV AI AI AKL++I ++RG W +
Sbjct: 104 RAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGY--WGNKL 161
Query: 136 RRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTV 195
PH+VP V GK GSV V+L+P PRG G+V V KK+L+ AG+ DV++ + G+TRT
Sbjct: 162 GAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMG 221
Query: 196 NFAKAVFNALYNTNKVVVTPEM 217
NF A F A+ T +TP++
Sbjct: 222 NFVMATFFAITKT-FAYLTPDL 242
>gb|AAF82250.1|AC008051_1 (AC008051) Identical to gene XW6 from Arabidopsis thaliana
gb|AB008016 and contains a Ribosomal protein S5 PF|00333
domain. ESTs gb|T22200, gb|N38541, gb|T45263 come from
this gene. This gene is cut off
Length = 231
Score = 145 bits (362), Expect = 5e-34
Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 15 EWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRM 74
+W P TKLG LV + +IT + +I+ +KE +IID L V E++ I +
Sbjct: 52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHL---VGPTLKDEVMKIMPVQKQ 108
Query: 75 TDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECR 134
T +G+R RF+ VG+ +G+VGLG+ +EV AIR AI AKL+++ ++RG W +
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY--WGNK 166
Query: 135 CRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTT 194
+PH+VP V GK GSV V+++P PRG G+V V KK+L+ AGI DV++ + G T+T
Sbjct: 167 IGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTL 226
Query: 195 VNFAK 199
NF K
Sbjct: 227 GNFVK 231
>gi|4506719 ribosomal protein S2 [Homo sapiens] >gi|88570|pir||S08228 ribosomal
protein S2, cytosolic - human (fragment)
>gi|34392|emb|CAA35078.1| (X17206) put. LLRep3 protein
(AA 1-221) [Homo sapiens]
Length = 221
Score = 138 bits (343), Expect = 8e-32
Identities = 80/188 (42%), Positives = 113/188 (59%), Gaps = 6/188 (3%)
Query: 30 QITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAV 89
+I + EI+ IKE EIID L A E+L I + T +G+R RF+ A+
Sbjct: 2 KIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 58
Query: 90 GNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKE 149
G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W + +PH+VP V G+
Sbjct: 59 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNKIGKPHTVPCKVTGRC 116
Query: 150 GSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTN 209
GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T NFAKA F+A+ T
Sbjct: 117 GSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTY 176
Query: 210 KVVVTPEM 217
+TP++
Sbjct: 177 S-YLTPDL 183
>gi|6678698 repeat family 3 gene [Mus musculus] >gi|91275|pir||A31139 ribosomal
protein S2 - mouse (fragment) >gi|200812|gb|AAA40074.1|
(M20632) LLRep3 protein [Mus musculus]
Length = 221
Score = 138 bits (343), Expect = 8e-32
Identities = 80/188 (42%), Positives = 113/188 (59%), Gaps = 6/188 (3%)
Query: 30 QITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAV 89
+I + EI+ IKE EIID L A E+L I + T +G+R RF+ A+
Sbjct: 2 KIKSLEEIYLFSLPIKESEIIDFFL---GASLKDEVLKIMPVQKQTRAGQRTRFKAFVAI 58
Query: 90 GNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKE 149
G+ +G+VGLG+ +EV AIR AI AKL+I+ ++RG W + +PH+VP V G+
Sbjct: 59 GDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY--WGNKIGKPHTVPCKVTGRC 116
Query: 150 GSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTN 209
GSV V+LIP PRG G+V V KK+L +AGI D ++ G T T NFAKA F+A+ T
Sbjct: 117 GSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTY 176
Query: 210 KVVVTPEM 217
+TP++
Sbjct: 177 S-YLTPDL 183
>gb|AAC36525.1| (U89418) ribosomal protein S2 [Mus musculus]
Length = 179
Score = 129 bits (320), Expect = 4e-29
Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 49 IIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGI 108
IID L A E+L I + T +G+R RF+ A+G+ +G+VGLG+ +EV
Sbjct: 1 IIDFYL---GASLKDEVLKIVPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEVAT 57
Query: 109 AIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIG 168
AIR AI AKL+I+ ++RG W + +PH+VP V G+ GSV V+LIP PRG G+V
Sbjct: 58 AIRGAIILAKLSIVPVRRGY--WGNKIGKPHTVPCKVTGRSGSVPVRLIPAPRGTGIVSA 115
Query: 169 DVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEM 217
V KK+L +AGI D ++ G T T NFAKA F+A+ T +TP++
Sbjct: 116 PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYS-YLTPDL 163
>dbj|BAA22001.1| (AB002761) ribosomal protein S2 [Entamoeba histolytica]
Length = 171
Score = 114 bits (283), Expect = 9e-25
Identities = 57/143 (39%), Positives = 89/143 (61%), Gaps = 2/143 (1%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+E++ + + T +G+R R + A+G+ +G+ GLG+ +EV AI+ A+ AKL ++
Sbjct: 1 EEVMTMQSVQKQTSAGQRTRLKAYVAIGDHNGHAGLGVKCAKEVAEAIKGAMIQAKLAMV 60
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
++RG W H+VP + G GSVRV+L+P PRG G+V KK L LAGI+D
Sbjct: 61 PVRRGY--WGATIGEVHTVPCKLTGACGSVRVRLVPAPRGTGIVAAPTPKKFLILAGIED 118
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
V++QT G T+T NF KA ++A+
Sbjct: 119 VFTQTTGHTKTLGNFVKATYDAV 141
>sp|Q9X1J2|RS5_THEMA 30S RIBOSOMAL PROTEIN S5 >gi|7440200|pir||C72248 ribosomal protein
S5 - Thermotoga maritima (strain MSB8)
>gi|4982047|gb|AAD36549.1|AE001798_14 (AE001798)
ribosomal protein S5 [Thermotoga maritima]
Length = 178
Score = 99.8 bits (245), Expect = 3e-20
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 12/156 (7%)
Query: 53 LLPEVNARENQE-ILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIR 111
++ E+ E +E I++I T ++T G+ + FRV+A VGN++G VGLGIG REV AIR
Sbjct: 6 VMKEIQYEEFEEKIIEIRRTSKVTKGGKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIR 65
Query: 112 KAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVG 171
KAI+ AK NI+E+ G ++P V G++ + +V L P G G++ G
Sbjct: 66 KAISAAKRNIVEVPVING----------TIPHEVIGRQDASKVLLKPAAPGTGIIAGGTV 115
Query: 172 KKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYN 207
+ ++ LAGIQ++ +++LG T +N A A N L N
Sbjct: 116 RAVVELAGIQNILTKSLGST-NPLNLALATMNGLKN 150
>sp|O67563|RS5_AQUAE 30S RIBOSOMAL PROTEIN S5 >gi|7440189|pir||B70442 ribosomal protein
S05 - Aquifex aeolicus >gi|2983990|gb|AAC07536.1|
(AE000749) ribosomal protein S05 [Aquifex aeolicus]
Length = 208
Score = 94.0 bits (230), Expect = 1e-18
Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 18/182 (9%)
Query: 45 KEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGR 104
++ + I+ +LPE+ E ++ T R+T GRR F L VG+R G+VG G G +
Sbjct: 14 RKQQNIEEILPELQLEER--LIYANRTARVTKGGRRFSFSTLVVVGDRKGHVGFGHGKAK 71
Query: 105 EVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLG 164
EV +AI K I AK N+I + G +VP V G G+ ++ ++P RG G
Sbjct: 72 EVTLAIAKGIEKAKKNVIRVPIVDG----------TVPHDVIGTFGATKIIVLPARRGTG 121
Query: 165 LVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMI-ERYGI 223
+V G K + LAG DV ++ +G T N +AVF+AL + TPE I E G+
Sbjct: 122 VVAGGAAKPVFELAGYTDVLTKIIGSTNPD-NVVRAVFDALLQ----LKTPEQIAEERGL 176
Query: 224 VV 225
V
Sbjct: 177 PV 178
>sp|P27152|RS5_THETH 30S RIBOSOMAL PROTEIN S5 >gi|10120568|pdb|1FKA|E Chain E, Structure
Of Functionally Activated Small Ribosomal Subunit At 3.3
A Resolution >gi|10835567|pdb|1FJF|E Chain E, Structure
Of The Thermus Thermophilus 30s Ribosomal Subunit
>gi|10835589|pdb|1FJG|E Chain E, Structure Of The
Thermus Thermophilus 30s Ribosomal Subunit In Complex
With The Antibiotics Streptomycin, Spectinomycin And
Paromomycin >gi|1514662|emb|CAA62290.1| (X90765)
ribosomal protein S5 [Thermus aquaticus]
Length = 162
Score = 89.7 bits (219), Expect = 3e-17
Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 13/152 (8%)
Query: 54 LPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKA 113
+PE + E +++ I T RM GRR RF L VG+R G VGLG G EV +A++KA
Sbjct: 1 MPETDFEE--KMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKA 58
Query: 114 INYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKK 173
YA+ N++E+ G ++P +E + G+ ++ L P G G++ G V +
Sbjct: 59 GYYARRNMVEVPLQNG----------TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRA 108
Query: 174 ILRLAGIQDVWSQTLGETRTTVNFAKAVFNAL 205
IL LAG+ D+ ++ LG +R +N A A AL
Sbjct: 109 ILELAGVTDILTKELG-SRNPINIAYATMEAL 139
>pir||F81266 30S ribosomal protein S5 Cj1690c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969105|emb|CAB73676.1|
(AL139079) 30S ribosomal protein S5 [Campylobacter
jejuni]
Length = 147
Score = 87.8 bits (214), Expect = 1e-16
Identities = 53/153 (34%), Positives = 83/153 (53%), Gaps = 12/153 (7%)
Query: 54 LPEVNARENQEIL-DIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRK 112
+ + N E +E++ DI ++ GRR RF L VGNR G VG+G G +EV AIRK
Sbjct: 1 MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLVGVGYGKAKEVPDAIRK 60
Query: 113 AINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGK 172
A++ A NI+E+K + ++ VE K + R+ L P G G++ G +
Sbjct: 61 AVDDAFKNIVEVK----------TKGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTR 110
Query: 173 KILRLAGIQDVWSQTLGETRTTVNFAKAVFNAL 205
I+ LAGI+D+ +++LG + + N +A AL
Sbjct: 111 PIVELAGIKDILTKSLG-SNNSANVVRATIKAL 142
>sp|P02357|RS5_BACST 30S RIBOSOMAL PROTEIN S5 (BS5) >gi|70883|pir||R3BS5F ribosomal
protein S5 - Bacillus stearothermophilus
>gi|143417|gb|AAA22699.1| (M57621) ribosomal protein S5
[Bacillus stearothermophilus]
Length = 166
Score = 85.8 bits (209), Expect = 4e-16
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ GRR+RF L VG+++G+VG G G +EV AIRKAI AK N+I
Sbjct: 13 ERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLI 72
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ G+ ++P V G G+ + L P G G++ G + +L LAGI D
Sbjct: 73 EVPI-VGT---------TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISD 122
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ S+++G + T +N +A F+ L
Sbjct: 123 ILSKSIG-SNTPINMVRATFDGL 144
>pdb|1PKP| Ribosomal Protein S5 (Prokaryotic)
Length = 150
Score = 85.8 bits (209), Expect = 4e-16
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ GRR+RF L VG+++G+VG G G +EV AIRKAI AK N+I
Sbjct: 13 ERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLI 72
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ G+ ++P V G G+ + L P G G++ G + +L LAGI D
Sbjct: 73 EVPI-VGT---------TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISD 122
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ S+++G + T +N +A F+ L
Sbjct: 123 ILSKSIG-SNTPINMVRATFDGL 144
>pdb|1DV4|E Chain E, Partial Structure Of 16s Rna Of The Small Ribosomal
Subunit From Thermus Thermophilus >gi|6137688|pdb|1QD7|D
Chain D, Partial Model For 30s Ribosomal Subunit
Length = 145
Score = 85.8 bits (209), Expect = 4e-16
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ GRR+RF L VG+++G+VG G G +EV AIRKAI AK N+I
Sbjct: 10 ERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLI 69
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ G+ ++P V G G+ + L P G G++ G + +L LAGI D
Sbjct: 70 EVPI-VGT---------TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISD 119
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ S+++G + T +N +A F+ L
Sbjct: 120 ILSKSIG-SNTPINMVRATFDGL 141
>pdb|1EG0|B Chain B, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 148
Score = 85.8 bits (209), Expect = 4e-16
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ GRR+RF L VG+++G+VG G G +EV AIRKAI AK N+I
Sbjct: 13 ERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLI 72
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ G+ ++P V G G+ + L P G G++ G + +L LAGI D
Sbjct: 73 EVPI-VGT---------TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISD 122
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ S+++G + T +N +A F+ L
Sbjct: 123 ILSKSIG-SNTPINMVRATFDGL 144
>sp|P56012|RS5_HELPY 30S RIBOSOMAL PROTEIN S5 >gi|7440194|pir||F64682 ribosomal protein
S5 - Helicobacter pylori >gi|2314466|gb|AAD08343.1|
(AE000633) ribosomal protein S5 (rps5) [Helicobacter
pylori 26695] >gi|4155832|gb|AAD06806.1| (AE001547) 30S
RIBOSOMAL PROTEIN S5 [Helicobacter pylori J99]
Length = 153
Score = 85.4 bits (208), Expect = 6e-16
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 54 LPEVNARENQEIL-DIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRK 112
+ E+N E QE++ +I ++ GRR RF L VGN++G VG G+G +EV AI+K
Sbjct: 7 MEEINREEFQEVVVNIGRVTKVVKGGRRFRFNALVVVGNKNGLVGFGLGKAKEVPDAIKK 66
Query: 113 AINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGK 172
A++ A N+I + + ++ +E K + R+ L P G G++ G +
Sbjct: 67 AVDDAFKNLIHV----------TIKGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTR 116
Query: 173 KILRLAGIQDVWSQTLGETRTTVNFAKAVFNAL 205
I+ LAGI+D+ +++LG + N +A F+AL
Sbjct: 117 PIVELAGIKDILTKSLG-SNNPYNVVRATFDAL 148
>pir||A82917 ribosomal protein S5 UU248 [imported] - Ureaplasma urealyticum
>gi|6899218|gb|AAF30657.1|AE002122_26 (AE002122)
ribosomal protein S5 [Ureaplasma urealyticum]
Length = 203
Score = 84.3 bits (205), Expect = 1e-15
Identities = 55/187 (29%), Positives = 90/187 (47%), Gaps = 32/187 (17%)
Query: 52 VLLPEVNARENQE------------------ILDIALTVRMTDSGRRVRFRVLAAVGNRD 93
V P VN +EN E ++ I + T GR +RF L +G+++
Sbjct: 22 VTAPVVNKKENTEPKAKTFKRETTTSNFEERVVKIKRISKTTKGGRMMRFSALVVIGDKN 81
Query: 94 GYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVR 153
G VG G+G EV AI+KAI A N+I++K+ + S+ V G+ G+ +
Sbjct: 82 GTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQ---------TKKGSIYHDVNGRHGAAK 132
Query: 154 VKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVV 213
V L+P P G G++ G + ++ LAG D+++++ G +N +A N L +
Sbjct: 133 VMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRG-ANAPMNVIRATINGLLQQ----L 187
Query: 214 TPEMIER 220
TP+ I R
Sbjct: 188 TPKEIAR 194
>pir||D75314 ribosomal protein S5 - Deinococcus radiodurans (strain R1)
>gi|6459909|gb|AAF11662.1|AE002046_8 (AE002046)
ribosomal protein S5 [Deinococcus radiodurans]
Length = 196
Score = 83.1 bits (202), Expect = 3e-15
Identities = 52/145 (35%), Positives = 79/145 (53%), Gaps = 11/145 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+++L + T + GRR RF L +G+R+G VG+GIG +EV +AI KA A+ N+I
Sbjct: 19 EKMLFVNRTSKTYQGGRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAVARKNMI 78
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
+ G ++P + G+ + RV L P G G++ G V + I LAGI +
Sbjct: 79 TVPVENG----------TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITN 128
Query: 183 VWSQTLGETRTTVNFAKAVFNALYN 207
+ S+ LG +R VN A AVF+ N
Sbjct: 129 MLSKELG-SRNKVNVAYAVFDGFKN 152
>gb|AAB59115.1| (M31102) spc ORF1; S5 [Bacillus subtilis]
Length = 165
Score = 82.3 bits (200), Expect = 5e-15
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 11/133 (8%)
Query: 73 RMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWE 132
R+ GRR RF L VG+++G+VG G G +EV AIRKA+ AK N+IE+ G+
Sbjct: 22 RVAKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPM-VGT-- 78
Query: 133 CRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETR 192
++P + G+ G+ + L P G G++ G + +L LAG+ D+ S++LG +
Sbjct: 79 -------TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLG-SN 130
Query: 193 TTVNFAKAVFNAL 205
T +N +A L
Sbjct: 131 TPINMIRATLQGL 143
>sp|P21467|RS5_BACSU 30S RIBOSOMAL PROTEIN S5 (BS5) >gi|7428657|pir||R3BS5S ribosomal
protein S5 - Bacillus subtilis
>gi|1044981|gb|AAB06816.1| (L47971) ribosomal protein S5
[Bacillus subtilis] >gi|2632400|emb|CAB11909.1| (Z99104)
ribosomal protein S5 [Bacillus subtilis]
Length = 166
Score = 82.3 bits (200), Expect = 5e-15
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ GRR RF L VG+++G+VG G G +EV AIRKA+ AK N+I
Sbjct: 13 ERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLI 72
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ G+ ++P + G+ G+ + L P G G++ G + +L LAG+ D
Sbjct: 73 EVPM-VGT---------TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVAD 122
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ S++LG + T +N +A L
Sbjct: 123 ILSKSLG-SNTPINMIRATLQGL 144
>sp|Q50301|RS5_MYCPN 30S RIBOSOMAL PROTEIN S5 >gi|2127657|pir||S62804 ribosomal protein
S5 - Mycoplasma pneumoniae >gi|2146634|pir||S73975
ribosomal protein S5 - Mycoplasma pneumoniae (SGC3)
(ATCC 29342) >gi|1215706|gb|AAC43699.1| (U34795) RpsE
[Mycoplasma pneumoniae] >gi|1674354|gb|AAB96297.1|
(AE000061) ribosomal protein S5 [Mycoplasma pneumoniae]
Length = 219
Score = 82.3 bits (200), Expect = 5e-15
Identities = 52/153 (33%), Positives = 77/153 (49%), Gaps = 15/153 (9%)
Query: 55 PEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAI 114
P + + I+ + + T GR +RF VL VGNR G +G GI EV AI+KAI
Sbjct: 60 PAFKSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAIKKAI 119
Query: 115 NYA--KLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGK 172
A L+ IEI +G S+ V G+ G+ RV L P P+G G++ G +
Sbjct: 120 KAAHNSLHTIEIHKG------------SIYHEVIGRSGASRVLLKPAPQGTGIIAGGAIR 167
Query: 173 KILRLAGIQDVWSQTLGETRTTVNFAKAVFNAL 205
I+ LAG D++++ LG T +N A + +
Sbjct: 168 AIIELAGYSDIYTKNLGR-NTPINMIHATMDGI 199
>sp|P10128|RS5_MYCCA 30S RIBOSOMAL PROTEIN S5 >gi|70885|pir||R3YM5C ribosomal protein S5
- Mycoplasma capricolum >gi|44226|emb|CAA29721.1|
(X06414) ribosomal protein S5 (AA 1-250) [Mycoplasma
capricolum]
Length = 250
Score = 81.9 bits (199), Expect = 6e-15
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
++++ I ++T GR RF + VGN+ G VG+G G EV AI+KAI AK N++
Sbjct: 47 EKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKKAIKEAKKNLV 106
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
+ R +VP G G+ ++ + P G G++ G + ++ L+GI D
Sbjct: 107 SV----------TLRNTAVPHWSLGTFGAGKILIKPAKVGTGIIAGGPARSVIELSGISD 156
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYG 222
V++++LG + +N +A F L + + E+ RYG
Sbjct: 157 VYAKSLG-SNNAINMIRATFEGLSSMQTLKRVQEL--RYG 193
>sp|Q9Z9J7|RS5_BACHD 30S RIBOSOMAL PROTEIN S5 >gi|11276537|pir||T44400 ribosomal protein
S5 [imported] - Bacillus halodurans
>gi|4512421|dbj|BAA75288.1| (AB017508) rpsE homologue
(identity of 88% to B. subtilis ) [Bacillus halodurans]
>gi|10172763|dbj|BAB03870.1| (AP001507) ribosomal
protein S5 [Bacillus halodurans]
Length = 166
Score = 81.1 bits (197), Expect = 1e-14
Identities = 48/143 (33%), Positives = 79/143 (54%), Gaps = 11/143 (7%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
++++ I ++ GRR RF L VG+++G VG G+G +EV AIRKA+ AK N+I
Sbjct: 13 EKVVAINRVAKVVKGGRRFRFAALVVVGDKNGRVGFGMGKAQEVPEAIRKAVEDAKKNLI 72
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ G+ ++P + G+ G+ RV L P G G++ G + +L LAG+ D
Sbjct: 73 EVPI-VGT---------TIPHEIVGRFGAGRVLLKPASEGTGVIAGGPVRAVLDLAGVGD 122
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ S++LG + +N +A L
Sbjct: 123 ILSKSLG-SNNPINMVRATVKGL 144
>sp|Q9XD19|RS5_LEPIN 30S RIBOSOMAL PROTEIN S5 >gi|5163221|gb|AAD40600.1|AF115283_19
(AF115283) ribosomal protein S5 [Leptospira interrogans]
Length = 180
Score = 81.1 bits (197), Expect = 1e-14
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 11/150 (7%)
Query: 56 EVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAIN 115
E + +++++ I ++ GRR F L+ VG++ G VG+G G EV AIRK+I
Sbjct: 25 EESKEYSEKVVKIDRVAKVVKGGRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIE 84
Query: 116 YAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKIL 175
AK ++++I + H++P V GK S RV L P G G++ G I+
Sbjct: 85 SAKKHLVKIN----------FKGHTIPHEVIGKFKSARVILKPSTAGTGIIAGASVTSIV 134
Query: 176 RLAGIQDVWSQTLGETRTTVNFAKAVFNAL 205
AGIQDV +++ G + VN KA +AL
Sbjct: 135 EKAGIQDVLTKSWGSS-NPVNIVKATLDAL 163
>gi|11465764 30S ribosomal protein S5 [Porphyra purpurea]
>gi|1710706|sp|P51298|RR5_PORPU CHLOROPLAST 30S
RIBOSOMAL PROTEIN S5 >gi|2147036|pir||S73219 ribosomal
protein S5, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276764|gb|AAC08184.1| (U38804) 30S
ribosomal protein S5 [Porphyra purpurea]
Length = 174
Score = 79.2 bits (192), Expect = 4e-14
Identities = 40/143 (27%), Positives = 79/143 (54%), Gaps = 10/143 (6%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ G+++ FRV+ VGN G VG+G+G +V A++K + AK +++
Sbjct: 19 ERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLV 78
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
+ + +S+P + G G+ +V L P G G++ G + +L L+G+Q+
Sbjct: 79 TVP---------LTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELSGVQN 129
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ ++ LG + T+N A+AV N L
Sbjct: 130 ILAKQLG-SNNTLNNARAVLNGL 151
>sp|P47414|RS5_MYCGE 30S RIBOSOMAL PROTEIN S5 >gi|1361835|pir||F64218 ribosomal protein
S5 - Mycoplasma genitalium >gi|3844762|gb|AAC71386.1|
(U39696) ribosomal protein S5 (rpS5) [Mycoplasma
genitalium]
Length = 211
Score = 79.2 bits (192), Expect = 4e-14
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYA--KLN 120
+ I+ + + T GR +RF VL VGN+ G VG GI EV +AI+KAI A ++
Sbjct: 60 ERIVKLKRISKTTKGGRNMRFSVLVVVGNKKGKVGYGIAKALEVPLAIKKAIKKAHNSIH 119
Query: 121 IIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
+EI +G S+ V G++G+ +V L P P G G++ G + I+ LAG
Sbjct: 120 TVEIHKG------------SIYHEVIGRKGASKVLLKPAPLGTGIIAGGAIRAIVELAGF 167
Query: 181 QDVWSQTLGETRTTVNFAKAVFNAL 205
D++++ LG T +N A + +
Sbjct: 168 SDIYTKNLGR-NTPINMIHATMDGI 191
>gi|11467331 ribosomal protein S5 [Cyanophora paradoxa]
>gi|133967|sp|P23402|RR5_CYAPA CYANELLE 30S RIBOSOMAL
PROTEIN S5 >gi|70889|pir||R3KT5 ribosomal protein S5,
cyanelle - Cyanophora paradoxa cyanelle
>gi|336655|gb|AAA63629.1| (M30487) ribosomal protein s5
[Cyanophora paradoxa] >gi|1016132|gb|AAA81219.1|
(U30821) ribosomal protein S5 [Cyanophora paradoxa]
Length = 169
Score = 78.8 bits (191), Expect = 5e-14
Identities = 41/143 (28%), Positives = 78/143 (53%), Gaps = 10/143 (6%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ I ++ G+++ FR + +GN G VG+GIG +V A++KA K +++
Sbjct: 19 ERVVQIRRVSKVVKGGKKLSFRAIVVIGNERGQVGVGIGKASDVINAVKKAAADGKKHVV 78
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ R +S+P ++G G+ RV + P G G++ G + +L LAG+++
Sbjct: 79 EVP---------LTRSNSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRN 129
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ ++ LG + +N A+A NAL
Sbjct: 130 ILAKQLG-SNNPLNNARAAMNAL 151
>gi|11465438 unknown; 30S ribosomal protein S5 [Cyanidium caldarium]
>gi|6466341|gb|AAF12923.1|AF022186_45 (AF022186)
unknown; 30S ribosomal protein S5 [Cyanidium caldarium]
Length = 168
Score = 78.4 bits (190), Expect = 7e-14
Identities = 43/148 (29%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 62 NQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNI 121
++ ++ I ++ G+++ FR + +GN G VG+G+G +V A++K ++ K I
Sbjct: 18 SERVIQITRVTKVVKGGKKLSFRAIIVIGNNQGSVGVGVGKASDVIGAVKKGVSDCKKQI 77
Query: 122 IEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQ 181
IE S ++ VEG+ G+ V L P +G G++ G + ++ L+GI+
Sbjct: 78 IEFPLTSSS---------TISHAVEGRFGAASVILKPSVQGSGVIAGGAMRTVIELSGIK 128
Query: 182 DVWSQTLGETRTTVNFAKAVFNALYNTN 209
++ ++ LG T+ +N AKA NAL N
Sbjct: 129 NIVAKQLG-TKNHLNNAKATINALSKLN 155
>gi|11467733 ribosomal protein S5 [Guillardia theta]
>gi|3914872|sp|O46910|RR5_GUITH CHLOROPLAST 30S
RIBOSOMAL PROTEIN S5 >gi|3603058|gb|AAC35719.1|
(AF041468) ribosomal protein S5 [Guillardia theta]
Length = 169
Score = 77.3 bits (187), Expect = 2e-13
Identities = 42/145 (28%), Positives = 78/145 (52%), Gaps = 10/145 (6%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ G+++ FR + +GN G VG+G+G +V A++KA+ + N+I
Sbjct: 19 ERVIQVRRVTKVVKGGKKLSFRAIIILGNERGQVGVGVGKASDVIGAVKKAVTDGRKNLI 78
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
I +S+P V+G G+ +V + P G G++ G + IL LAGI++
Sbjct: 79 NIP---------LTNQNSIPHIVQGYSGAAKVIIKPSAPGSGVIAGGSVRTILELAGIKN 129
Query: 183 VWSQTLGETRTTVNFAKAVFNALYN 207
+ ++ LG + +N A+A NAL N
Sbjct: 130 ILAKQLGSS-NPLNNARAAANALIN 153
>sp|O52349|RS5_MYCGA 30S RIBOSOMAL PROTEIN S5 >gi|2766520|gb|AAB95404.1| (AF036708)
ribosomal protein S5 [Mycoplasma gallisepticum]
Length = 221
Score = 76.1 bits (184), Expect = 4e-13
Identities = 45/144 (31%), Positives = 75/144 (51%), Gaps = 12/144 (8%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
++I+ I+ + T GR +RF L VG+R G VG GI EV AI+KA+ A+ N+
Sbjct: 69 EKIVKISRISKTTKGGRTMRFSALVVVGDRKGRVGFGIAKALEVPNAIKKALKMAENNVQ 128
Query: 123 EIKRGCGSWECRCRRPHSVPF-TVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQ 181
+I H F V G+ G+ +V + P P G G++ G + ++ LAG
Sbjct: 129 KI----------AMNKHGTLFHDVLGRSGAAKVLIKPAPSGTGIIAGGAIRAVVELAGFT 178
Query: 182 DVWSQTLGETRTTVNFAKAVFNAL 205
DV+++ +G+ T +N +A + +
Sbjct: 179 DVYTKNMGK-NTPINMVRATMDGI 201
>sp|O24705|RS5_SYNP6 30S RIBOSOMAL PROTEIN S5 >gi|2446906|dbj|BAA22465.1| (AB000111) 30S
ribosomal protein S5 [Synechococcus sp.]
Length = 180
Score = 73.4 bits (177), Expect = 2e-12
Identities = 40/150 (26%), Positives = 78/150 (51%), Gaps = 10/150 (6%)
Query: 56 EVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAIN 115
E + + ++ I ++ G+++ FR + VGN G VG+G+G +V A+RK +
Sbjct: 20 EKESEWQERVVQIRRVTKVVKGGKKLSFRAIVIVGNERGQVGVGVGKASDVIGAVRKGVA 79
Query: 116 YAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKIL 175
K +++ + R S+P G+ G+ +V + P G G++ G + +L
Sbjct: 80 DGKKHLVNVP---------LTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVL 130
Query: 176 RLAGIQDVWSQTLGETRTTVNFAKAVFNAL 205
LAG+++V ++ LG +++ +N A+A AL
Sbjct: 131 ELAGVKNVLAKRLG-SKSPLNNARAALEAL 159
>emb|CAB82087.1| (AL161803) 30S ribosomal protein S5 [Streptomyces coelicolor A3(2)]
Length = 201
Score = 73.0 bits (176), Expect = 3e-12
Identities = 49/170 (28%), Positives = 81/170 (46%), Gaps = 14/170 (8%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ I ++ GRR F L VG+ DG VG+G G +EV AI K + AK +
Sbjct: 36 ERVVAINRVAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKHFF 95
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
++ R G ++P ++G++ + V L P G G++ G + +L AGI D
Sbjct: 96 KVPRIQG----------TIPHPIQGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGIHD 145
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPAS 232
V S++LG + +N A AL + E+ R G+ + PA+
Sbjct: 146 VLSKSLG-SDNQINIVHATVEALKGLQR---PEEIAARRGLPLEDVAPAA 191
>pir||S50003 ribosomal protein S5 - Streptomyces coelicolor
Length = 167
Score = 72.2 bits (174), Expect = 5e-12
Identities = 49/170 (28%), Positives = 81/170 (46%), Gaps = 14/170 (8%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ I ++ GRR F L VG+ DG VG+G G +EV AI K + AK +
Sbjct: 2 ERVVAINRVAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIVKGVEEAKKHFF 61
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
++ R G ++P ++G++ + V L P G G++ G + +L AGI D
Sbjct: 62 KVPRIQG----------TIPHPIQGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGIHD 111
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPAS 232
V S++LG + +N A AL + E+ R G+ + PA+
Sbjct: 112 VLSKSLG-SDNQINIVHATVEALKGLQR---PEEIAARRGLPLEDVAPAA 157
>sp|P73304|RS5_SYNY3 30S RIBOSOMAL PROTEIN S5 >gi|7440195|pir||S77486 ribosomal protein
S5 - Synechocystis sp. (strain PCC 6803)
>gi|1652411|dbj|BAA17333.1| (D90905) 30S ribosomal
protein S5 [Synechocystis sp.]
Length = 173
Score = 72.2 bits (174), Expect = 5e-12
Identities = 39/143 (27%), Positives = 73/143 (50%), Gaps = 10/143 (6%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ I ++ G+++ FR + VGN G VG+G+G +V A+RK + K +I
Sbjct: 19 ERVIQIRRVSKVVKGGKKLSFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLI 78
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
E+ + +S+ G G +V + P G G++ G + +L LAG+++
Sbjct: 79 EVP---------LTKSNSITHITNGVSGGAKVVVRPAAPGTGVIAGGAVRTVLELAGVKN 129
Query: 183 VWSQTLGETRTTVNFAKAVFNAL 205
+ ++ LG + +N A+A NAL
Sbjct: 130 ILAKQLG-SNNPLNNARAAINAL 151
>sp|O54299|RS5_SALTY 30S RIBOSOMAL PROTEIN S5 >gi|2780218|emb|CAA11205.1| (AJ223237)
ribosomal protein S5 [Salmonella typhimurium]
Length = 167
Score = 72.2 bits (174), Expect = 5e-12
Identities = 52/164 (31%), Positives = 79/164 (47%), Gaps = 16/164 (9%)
Query: 56 EVNARENQEILDIALTVRMTDSGRRV-RFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAI 114
E A E QE L V T G R+ F L VG+ +G VG G G REV AI+KA+
Sbjct: 5 EKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAM 64
Query: 115 NYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKI 174
A+ N+I + G ++ V+G +RV + P G G++ G + +
Sbjct: 65 EKARRNMINVALNNG----------TLQHPVKGVHTGLRVIMQPASEGTGIIAGGAMRAV 114
Query: 175 LRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMI 218
L +AG+ +V ++ G T +N +A + L N N +PEM+
Sbjct: 115 LEVAGVHNVLAKAYGST-NPINVVRATIDGLENMN----SPEMV 153
>sp|P46790|RS5_STRCO 30S RIBOSOMAL PROTEIN S5 >gi|2924290|emb|CAA58136.1| (X83011) S5
ribosomal protein [Streptomyces coelicolor]
Length = 201
Score = 72.2 bits (174), Expect = 5e-12
Identities = 49/170 (28%), Positives = 81/170 (46%), Gaps = 14/170 (8%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ I ++ GRR F L VG+ DG VG+G G +EV AI K + AK +
Sbjct: 36 ERVVAINRVAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIVKGVEEAKKHFF 95
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
++ R G ++P ++G++ + V L P G G++ G + +L AGI D
Sbjct: 96 KVPRIQG----------TIPHPIQGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGIHD 145
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIVVGRAMPAS 232
V S++LG + +N A AL + E+ R G+ + PA+
Sbjct: 146 VLSKSLG-SDNQINIVHATVEALKGLQR---PEEIAARRGLPLEDVAPAA 191
>sp|P02356|RS5_ECOLI 30S RIBOSOMAL PROTEIN S5 >gi|7428656|pir||R3EC5 ribosomal protein
S5 [validated] - Escherichia coli
>gi|42986|emb|CAA25722.1| (X01563) S5 (rpSE) (aa 1-167)
[Escherichia coli] >gi|606237|gb|AAA58100.1| (U18997)
30S ribosomal subunit protein S5 [Escherichia coli]
>gi|1789699|gb|AAC76328.1| (AE000408) 30S ribosomal
subunit protein S5 [Escherichia coli K12]
Length = 167
Score = 71.0 bits (171), Expect = 1e-11
Identities = 52/164 (31%), Positives = 78/164 (46%), Gaps = 16/164 (9%)
Query: 56 EVNARENQEILDIALTVRMTDSGRRV-RFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAI 114
E A E QE L V T G R+ F L VG+ +G VG G G REV AI+KA+
Sbjct: 5 EKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAM 64
Query: 115 NYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKI 174
A+ N+I + G ++ V+G RV + P G G++ G + +
Sbjct: 65 EKARRNMINVALNNG----------TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAV 114
Query: 175 LRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMI 218
L +AG+ +V ++ G T +N +A + L N N +PEM+
Sbjct: 115 LEVAGVHNVLAKAYGST-NPINVVRATIDGLENMN----SPEMV 153
>sp|P57574|RS5_BUCAI 30S RIBOSOMAL PROTEIN S5 >gi|10039166|dbj|BAB13200.1| (AP001119)
30S ribosomal protein S5 [Buchnera sp. APS]
Length = 167
Score = 70.6 bits (170), Expect = 2e-11
Identities = 47/156 (30%), Positives = 75/156 (47%), Gaps = 15/156 (9%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
++++ + + GR F L VGN DG VG G G REV AI+KA+ A+ N+I
Sbjct: 14 EKLITVNRVSKTVKGGRIFSFTALTVVGNGDGKVGFGYGKAREVPAAIQKAMEQARRNMI 73
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
I ++ +++G V + P G G++ G + +L +AGI +
Sbjct: 74 TIP----------LVNKTLQHSLKGSHTGSNVFMKPASDGTGIIAGGAMRAVLEVAGIHN 123
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMI 218
V ++T G T +N +A N L N + +PEMI
Sbjct: 124 VLAKTYGST-NPINVVRATMNGLVN----MKSPEMI 154
>sp|P44374|RS5_HAEIN 30S RIBOSOMAL PROTEIN S5 >gi|1075274|pir||D64094 ribosomal protein
S5 - Haemophilus influenzae (strain Rd KW20)
>gi|1573805|gb|AAC22453.1| (U32762) ribosomal protein S5
(rpS5) [Haemophilus influenzae Rd]
Length = 166
Score = 70.2 bits (169), Expect = 2e-11
Identities = 45/156 (28%), Positives = 78/156 (49%), Gaps = 15/156 (9%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
++++ + + GR + F L VG+ +G VG G G REV AI+KA+ A+ N+I
Sbjct: 13 EKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMI 72
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
+ G ++ V+G RV + P G G++ G + +L +AG+++
Sbjct: 73 NVALNEG----------TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRN 122
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMI 218
V S+ G T +N +A +AL N + +PEM+
Sbjct: 123 VLSKAYGST-NPINVVRATIDALAN----MKSPEMV 153
>pir||E82057 ribosomal protein S5 VC2579 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9657166|gb|AAF95720.1| (AE004326)
ribosomal protein S5 [Vibrio cholerae]
Length = 167
Score = 70.2 bits (169), Expect = 2e-11
Identities = 50/164 (30%), Positives = 81/164 (48%), Gaps = 16/164 (9%)
Query: 56 EVNARENQEILDIALTVRMTDSGRRVR-FRVLAAVGNRDGYVGLGIGHGREVGIAIRKAI 114
+V A + QE L V T G R+ F L VG+ +G VG G G REV AI+KA+
Sbjct: 6 QVQANDLQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAM 65
Query: 115 NYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKI 174
A+ +++ I G ++ V+G+ +V + P G G++ G + +
Sbjct: 66 EKARRSMVTIALNEG----------TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAV 115
Query: 175 LRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMI 218
L +AG+ +V S+ G T +N +A +AL + V +PEM+
Sbjct: 116 LEVAGVHNVLSKAYGST-NPINIVRATIDALVD----VKSPEMV 154
>emb|CAA63650.1| (X93159) ribosomal protein S5 [Spinacia oleracea]
Length = 308
Score = 69.5 bits (167), Expect = 4e-11
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ + ++ G+ +RFR + VG++ G VG+G+G +EV A++KA A+ NII
Sbjct: 154 ENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNII 213
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
+ + + P E G+ RV L P G G++ G + +L +AG+++
Sbjct: 214 TVP---------MTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVEN 264
Query: 183 VWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEMIERYGIV 224
+ LG NAL N +V + + ++ V
Sbjct: 265 ALGKQLGSN-----------NALNNARATIVAVQTMRQFSDV 295
>sp|P33105|RS5_MICLU 30S RIBOSOMAL PROTEIN S5 >gi|322077|pir||S29888 Ribosomal protein
S5 - Micrococcus luteus >gi|44432|emb|CAA35564.1|
(X17524) S5 protein [Micrococcus luteus]
Length = 183
Score = 69.1 bits (166), Expect = 5e-11
Identities = 45/146 (30%), Positives = 73/146 (49%), Gaps = 11/146 (7%)
Query: 60 RENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKL 119
R++Q + + R++ GRR F L VG+ DG VG+G G +EV AI+KA+ AK
Sbjct: 7 RKDQFLERVVGINRVSKVGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIQKAVEEAKK 66
Query: 120 NIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAG 179
+ + R GS ++P V+G++ + V L P G ++ G + +L AG
Sbjct: 67 SFFRVPR-VGS---------TIPHLVQGEDAAGVVLLRPASPGTAVIAGGPVRAVLECAG 116
Query: 180 IQDVWSQTLGETRTTVNFAKAVFNAL 205
I DV S+++G +N + L
Sbjct: 117 IHDVLSKSMGSV-NAINIVRGTVEGL 141
>gi|11467454 30S ribosomal protein S5 [Odontella sinensis]
>gi|1350895|sp|P49493|RR5_ODOSI CHLOROPLAST 30S
RIBOSOMAL PROTEIN S5 >gi|7440190|pir||S78259 ribosomal
protein S5, chloroplast - Odontella sinensis chloroplast
>gi|1185149|emb|CAA91632.1| (Z67753) 30S ribosomal
protein S5 [Odontella sinensis]
Length = 185
Score = 69.1 bits (166), Expect = 5e-11
Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
+ ++ I+ ++T G+++ FR + VGN +G VG+G+G +V A +KA + N+I
Sbjct: 28 ERLIKISRVSKVTKGGKKLSFRAIVVVGNENGQVGVGVGKADDVVNAFKKAKADGRKNLI 87
Query: 123 EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQD 182
+I + S+P V G G+ ++ + P G G++ G + +L +AGI++
Sbjct: 88 KIP---------ITKSLSIPHNVIGIFGACKIIMRPSIEGSGVIAGGSVRTVLEVAGIKN 138
Query: 183 VWSQTLGETRTTVNFAKAVFNALYN 207
V ++ LG + +N A+A + L N
Sbjct: 139 VIAKQLG-SNNVLNNARAAVSGLNN 162
>sp|O83236|RS5_TREPA 30S RIBOSOMAL PROTEIN S5 >gi|7440192|pir||H71356 probable ribosomal
protein S5 (rpsE) - syphilis spirochete
>gi|3322469|gb|AAC65190.1| (AE001202) ribosomal protein
S5 (rpsE) [Treponema pallidum]
Length = 172
Score = 69.1 bits (166), Expect = 5e-11
Identities = 43/145 (29%), Positives = 74/145 (50%), Gaps = 15/145 (10%)
Query: 63 QEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNII 122
++++ + T ++ GRR F L VG++ G VG G G +V AIRK++ AK +++
Sbjct: 19 EKLIKLNRTAKVVKGGRRFSFSALTVVGDQKGRVGFGFGKAGDVSEAIRKSVERAKRSMV 78
Query: 123 --EIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGI 180
+K G ++P V+ K V L P G G++ G + I+ +AG
Sbjct: 79 LFPLKDG------------TIPHEVQAKFKGSLVLLRPACSGTGIIAGGTVRAIMEVAGA 126
Query: 181 QDVWSQTLGETRTTVNFAKAVFNAL 205
DV S++LG + + +N +A F A+
Sbjct: 127 TDVLSKSLG-SNSAINVVRATFGAV 150
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89109403
Number of Sequences: 2977
Number of extensions: 3642290
Number of successful extensions: 8215
Number of sequences better than 1.0e-10: 78
Number of HSP's better than 0.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 8071
Number of HSP's gapped (non-prelim): 79
length of query: 236
length of database: 189,106,746
effective HSP length: 53
effective length of query: 183
effective length of database: 157,386,935
effective search space: 28801809105
effective search space used: 28801809105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)