BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2137 (rpl30P) DE:LSU ribosomal protein L30P (rpl30P)
(155 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75145 lsu ribosomal protein l30p (rpl30p) PAB2137 - Pyroco... 314 3e-85
dbj|BAB13705.1| (AB040118) ribosomal protein PfL30 [Pyrococcus f... 312 1e-84
sp|O59440|RL30_PYRHO 50S RIBOSOMAL PROTEIN L30P >gi|7440715|pir|... 309 1e-83
sp|P54046|RL30_METJA 50S RIBOSOMAL PROTEIN L30P >gi|2119114|pir|... 207 5e-53
sp|O26132|RL30_METTH 50S RIBOSOMAL PROTEIN L30P >gi|7440716|pir|... 198 3e-50
gi|11499488 LSU ribosomal protein L30P (rpl30P) [Archaeoglobus f... 185 3e-46
sp|P14035|RL30_METVA 50S RIBOSOMAL PROTEIN L30P >gi|71124|pir||R... 178 4e-44
sp|Q9YF96|RL30_AERPE 50S RIBOSOMAL PROTEIN L30P >gi|7440719|pir|... 139 1e-32
sp|O05642|RL30_SULAC 50S RIBOSOMAL PROTEIN L30P >gi|2052267|emb|... 122 2e-27
emb|CAC12374.1| (AL445067) 50S ribosomal protein L30 related pro... 120 7e-27
gb|AAK40998.1| LSU ribosomal protein L30AB (rpl30AB) [Sulfolobus... 118 3e-26
sp|Q9UX86|RL7_SULSO 50S RIBOSOMAL PROTEIN L30P >gi|6015779|emb|C... 118 3e-26
sp|P14121|RL30_HALMA 50S RIBOSOMAL PROTEIN L30P (HMAL30) (HL20) ... 108 3e-23
gb|AAG19957.1| (AE005077) 50S ribosomal protein L30P; Rpl30p [Ha... 100 8e-21
gb|AAF52868.1| (AE003627) RpL7 gene product [Drosophila melanoga... 82 4e-15
sp|P32100|RL7_DROME 60S RIBOSOMAL PROTEIN L7 >gi|103356|pir||S21... 82 4e-15
sp|P25457|RL7B_SCHPO 60S RIBOSOMAL PROTEIN L7-B >gi|283078|pir||... 80 1e-14
sp|O01802|RL7_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L7 >gi|750408... 77 1e-13
sp|O60143|RL7C_SCHPO 60S RIBOSOMAL PROTEIN L7-C >gi|7490047|pir|... 77 1e-13
sp|P11874|RL7_DICDI 60S RIBOSOMAL PROTEIN L7 >gi|71122|pir||R5DO... 75 6e-13
sp|P17937|RL7A_SCHPO 60S RIBOSOMAL PROTEIN L7-A >gi|71123|pir||R... 74 8e-13
gi|11422788 similar to ribosomal protein L7 (H. sapiens) [Homo s... 71 7e-12
gb|AAA40064.1| (M85235) ribosomal protein [Mus musculus] 71 7e-12
gb|AAA03081.1| (L16558) ribosomal protein L7 [Homo sapiens] 71 7e-12
sp|P14148|RL7_MOUSE 60S RIBOSOMAL PROTEIN L7 71 7e-12
pir||JC4230 ribosomal protein L7 - rat >gi|11383729|pir||R5RTL7 ... 71 7e-12
gb|AAG33073.1|AF175983_1 (AF175983) ribosomal protein L7 [Rana s... 70 2e-11
gi|6755356 ribosomal protein L7 [Mus musculus] >gi|91273|pir||A3... 69 2e-11
pir||S30212 ribosomal protein L7 - human >gi|1335288|emb|CAA4102... 69 2e-11
gi|4506659 ribosomal protein L7 [Homo sapiens] >gi|35903|emb|CAA... 68 4e-11
gb|AAD08846.1| (AC005058) similar to 60S ribosomal protein L7; s... 68 4e-11
gi|11422592 similar to ribosomal protein L7 (H. sapiens) [Homo s... 68 6e-11
>pir||C75145 lsu ribosomal protein l30p (rpl30p) PAB2137 - Pyrococcus abyssi
(strain Orsay) >gi|5457752|emb|CAB49242.1| (AJ248284)
LSU ribosomal protein L30P (rpl30P) [Pyrococcus abyssi]
Length = 155
Score = 314 bits (797), Expect = 3e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN
Sbjct: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
Query: 61 AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH 120
AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH
Sbjct: 61 AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH 120
Query: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
PPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML
Sbjct: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
>dbj|BAB13705.1| (AB040118) ribosomal protein PfL30 [Pyrococcus furiosus]
Length = 155
Score = 312 bits (792), Expect = 1e-84
Identities = 153/155 (98%), Positives = 155/155 (99%)
Query: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN
Sbjct: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
Query: 61 AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH 120
AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKV+NGEMSLKDLPNLKPVFRLH
Sbjct: 61 AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLH 120
Query: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
PPRGGFRGSKKRSFKEGGALGYRGEKIN+LIERML
Sbjct: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155
>sp|O59440|RL30_PYRHO 50S RIBOSOMAL PROTEIN L30P >gi|7440715|pir||G71184 probable
ribosomal protein L30 - Pyrococcus horikoshii
>gi|3258187|dbj|BAA30870.1| (AP000007) 155aa long
hypothetical 50S ribosomal protein L30 [Pyrococcus
horikoshii]
Length = 155
Score = 309 bits (783), Expect = 1e-83
Identities = 151/155 (97%), Positives = 155/155 (99%)
Query: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN
Sbjct: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
Query: 61 AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH 120
AETLAKLIRKRG+LIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH
Sbjct: 61 AETLAKLIRKRGKLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLH 120
Query: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
PPRGGF+GSKKRSF+EGGALGYRGEKIN+LIERML
Sbjct: 121 PPRGGFKGSKKRSFQEGGALGYRGEKINELIERML 155
>sp|P54046|RL30_METJA 50S RIBOSOMAL PROTEIN L30P >gi|2119114|pir||D64359 ribosomal
protein L7 - Methanococcus jannaschii
>gi|1591178|gb|AAB98465.1| (U67497) LSU ribosomal
protein L30P (rpmD) [Methanococcus jannaschii]
Length = 154
Score = 207 bits (522), Expect = 5e-53
Identities = 101/152 (66%), Positives = 122/152 (79%), Gaps = 2/152 (1%)
Query: 5 AVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETL 64
AVIRIRGRV V+R + DTL MLRLH+VNHCVI+ +T ++ GMLQK KDY+TWGEI+ +TL
Sbjct: 4 AVIRIRGRVGVRRDIADTLKMLRLHKVNHCVIIPETETFKGMLQKVKDYVTWGEIDKDTL 63
Query: 65 AKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLHPPRG 124
KLI KRGRL GNK V E +KE GM +EE A+K+INGE+ LK+ P LKPVFRLHPPR
Sbjct: 64 VKLILKRGRLPGNKKVNPEIIKELTGMDVEELAEKIINGEIKLKETP-LKPVFRLHPPRK 122
Query: 125 GF-RGSKKRSFKEGGALGYRGEKINDLIERML 155
GF RG K+ F GGALGYRGEKIN+L+E+M+
Sbjct: 123 GFERGGIKKPFSVGGALGYRGEKINELLEKMM 154
>sp|O26132|RL30_METTH 50S RIBOSOMAL PROTEIN L30P >gi|7440716|pir||H69129 ribosomal
protein L30 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621061|gb|AAB84533.1| (AE000796)
ribosomal protein L7 (E.coli L30) [Methanobacterium
thermoautotrophicum]
Length = 152
Score = 198 bits (498), Expect = 3e-50
Identities = 94/152 (61%), Positives = 122/152 (79%), Gaps = 3/152 (1%)
Query: 5 AVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETL 64
AV+R+RG V+R + DT+ MLRL+R+NH V+V+DTPSYLGMLQKAKDYITWGE++ ETL
Sbjct: 3 AVVRVRGSAGVRRDIADTMEMLRLNRINHAVLVEDTPSYLGMLQKAKDYITWGEVDQETL 62
Query: 65 AKLIRKRGRLIGNKPVTDEYVKEKLGM-TIEEFAQKVINGEMSLKDLPNLKPVFRLHPPR 123
+IRKRGRLIG +TDEY+ EK +++EFA V +GE+ L++ +KPVFRLHPPR
Sbjct: 63 TAMIRKRGRLIGGDRITDEYINEKTAYGSVDEFAAAVFSGEVKLEE-AGIKPVFRLHPPR 121
Query: 124 GGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
G+ G KK +F EGG+LGYRGEKINDL++RM+
Sbjct: 122 KGYEGIKK-AFNEGGSLGYRGEKINDLLKRMI 152
>gi|11499488 LSU ribosomal protein L30P (rpl30P) [Archaeoglobus fulgidus]
>gi|3914731|sp|O28375|RL30_ARCFU 50S RIBOSOMAL PROTEIN
L30P >gi|7440717|pir||G69487 LSU ribosomal protein L30P
(rpl30P) homolog - Archaeoglobus fulgidus
>gi|2648635|gb|AAB89345.1| (AE000971) LSU ribosomal
protein L30P (rpl30P) [Archaeoglobus fulgidus]
Length = 152
Score = 185 bits (464), Expect = 3e-46
Identities = 93/151 (61%), Positives = 116/151 (76%), Gaps = 3/151 (1%)
Query: 5 AVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETL 64
AV+R+RG V+V R +++TL MLRLH+ HCV++ DTPSY GMLQ KDY+ +GEINAETL
Sbjct: 3 AVVRMRGTVDVHRKIKETLKMLRLHKRYHCVVIPDTPSYRGMLQVVKDYVAYGEINAETL 62
Query: 65 AKLIRKRGRLIGNKPVTDEYVKEKLGM-TIEEFAQKVINGEMSLKDLPNLKPVFRLHPPR 123
A L+R RGRL GN+ +TDEYVKEK G TIEEFA+ V+ G+ SLKDLP+LKPVFRLHPPR
Sbjct: 63 ALLLRLRGRLTGNRKLTDEYVKEKTGYETIEEFAKAVVEGKASLKDLPDLKPVFRLHPPR 122
Query: 124 GGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
G + K + G LGY GE+IN L+ +M
Sbjct: 123 KGIKNIKWHYPR--GNLGYHGEEINRLLYKM 151
>sp|P14035|RL30_METVA 50S RIBOSOMAL PROTEIN L30P >gi|71124|pir||R5MX30 ribosomal protein
L30 - Methanococcus vannielii >gi|44769|emb|CAA34701.1|
(X16720) rpL30 (AA 1-154) [Methanococcus vannielii]
Length = 154
Score = 178 bits (446), Expect = 4e-44
Identities = 84/152 (55%), Positives = 114/152 (74%), Gaps = 2/152 (1%)
Query: 5 AVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETL 64
AV+R+RG V V+ + DT+ MLRLHRVNHCV++ + Y GM++K KDY+T+GEI+ ETL
Sbjct: 4 AVVRVRGSVGVRGDIADTMKMLRLHRVNHCVVIPENDHYTGMIKKVKDYVTYGEIDKETL 63
Query: 65 AKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPVFRLHPPRG 124
LI KRGRL GNK +++E +KE + + ++ A+KV+ GE+ LKD P +KPVFRLHPPR
Sbjct: 64 VSLILKRGRLAGNKRLSEELLKELVELPVDALAEKVLAGEIKLKDTP-IKPVFRLHPPRR 122
Query: 125 GF-RGSKKRSFKEGGALGYRGEKINDLIERML 155
G+ RG K+ F GGALGYR KINDL+ +M+
Sbjct: 123 GYDRGGIKKGFSIGGALGYRAGKINDLLNKMM 154
>sp|Q9YF96|RL30_AERPE 50S RIBOSOMAL PROTEIN L30P >gi|7440719|pir||H72725 probable
ribosomal protein L30 APE0345 - Aeropyrum pernix
(strain K1) >gi|5103984|dbj|BAA79300.1| (AP000059) 162aa
long hypothetical 50S ribosomal protein L30 [Aeropyrum
pernix]
Length = 162
Score = 139 bits (348), Expect = 1e-32
Identities = 76/159 (47%), Positives = 107/159 (66%), Gaps = 4/159 (2%)
Query: 1 MAKLAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDT-PSYLGMLQKAKDYITWGEI 59
M AVIRIRG V+V + TL +LRL R I D+ P ML+ + + T+GEI
Sbjct: 4 MPLYAVIRIRGTVDVPPDIDKTLYLLRLRRRYTASIYHDSLPGLRDMLRTVEAWTTYGEI 63
Query: 60 NAETLAKLIRKRGRLIGNKPVTDEYVKEKLGMT-IEEFAQKVINGEMSLKDLPN--LKPV 116
L +L+RKRGR++G+KP+TD++V+E LG++ + E A+K+++GE+ L +KP
Sbjct: 64 EERVLEELLRKRGRIVGDKPLTDKWVEENLGLSGLGELAEKLVSGELHYHRLEEKGVKPF 123
Query: 117 FRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
FRLHPPRGGF+ S KR F++GG LGYRG IN+LI +ML
Sbjct: 124 FRLHPPRGGFKKSIKRMFRDGGELGYRGSAINELILKML 162
>sp|O05642|RL30_SULAC 50S RIBOSOMAL PROTEIN L30P >gi|2052267|emb|CAA69098.1| (Y07778)
ribosomal protein L30 [Sulfolobus acidocaldarius]
Length = 156
Score = 122 bits (304), Expect = 2e-27
Identities = 64/153 (41%), Positives = 91/153 (58%), Gaps = 2/153 (1%)
Query: 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAET 63
+ VIRIRG ++DTL+MLRL + +I S GML Y+TWGE+N E
Sbjct: 5 IGVIRIRGWAATPWYIQDTLSMLRLKNAFNAMIYPKDSSIQGMLNLVSSYVTWGELNDEG 64
Query: 64 LAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVINGEMSLKDLPNLKPV-FRLHPP 122
L L+ K + K V +EYVK+KL + + F + + +G++ L L + + RLHPP
Sbjct: 65 LRLLVSKL-EISRGKKVNEEYVKDKLNVDFQSFVESIKDGKLRLNKLDEIFSLPIRLHPP 123
Query: 123 RGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
+GGF+G R F+ GG GYRG+KIN+LI RM+
Sbjct: 124 KGGFKGKVSRPFRAGGEFGYRGDKINELIRRMV 156
>emb|CAC12374.1| (AL445067) 50S ribosomal protein L30 related protein [Thermoplasma
acidophilum]
Length = 142
Score = 120 bits (299), Expect = 7e-27
Identities = 58/131 (44%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Query: 26 LRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPVTDEYV 85
+RL+R+NH V++++ GMLQK KDY+TWGEI+ +TL L++ R G K +T+E +
Sbjct: 1 MRLNRINHLVLLNENEVVKGMLQKVKDYVTWGEIDLDTLELLLKNRLLFRGRKHLTEEEL 60
Query: 86 KEKLGMT-IEEFAQKVINGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRG 144
KEK G T + AQ +I+G++ ++ + PV RL+PP+GG+ +K S++ GG+ GYRG
Sbjct: 61 KEKTGFTSYRDLAQALIDGKIKPSEIADAVPVIRLNPPKGGYEAIRK-SYRSGGSSGYRG 119
Query: 145 EKINDLIERML 155
IN LI RM+
Sbjct: 120 SDINQLIRRMI 130
>gb|AAK40998.1| LSU ribosomal protein L30AB (rpl30AB) [Sulfolobus solfataricus]
Length = 158
Score = 118 bits (294), Expect = 3e-26
Identities = 67/154 (43%), Positives = 90/154 (57%), Gaps = 2/154 (1%)
Query: 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAET 63
L +IRIRG + +TL MLRL + ++ T LGML K YITWGEI+ +T
Sbjct: 5 LGIIRIRGWAKAPWYINETLNMLRLRYNFNTMVYPKTSQILGMLNKVSPYITWGEIDPDT 64
Query: 64 LAKLIRKRGRLIGNKPVTDEYVKEKLGM-TIEEFAQKVINGEMSLKDLPN-LKPVFRLHP 121
L LI R + V+D YVKE L + I+ +++ G++ L L K RLHP
Sbjct: 65 LKLLIINRLETVKGDKVSDSYVKEVLKIENIDAMVKQLYEGKIYLHKLDEYFKLPIRLHP 124
Query: 122 PRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
PRGGF+GS KR +K G GYRG+KIN+L+ RM+
Sbjct: 125 PRGGFKGSVKRPYKNKGEFGYRGDKINELMRRMV 158
>sp|Q9UX86|RL7_SULSO 50S RIBOSOMAL PROTEIN L30P >gi|6015779|emb|CAB57606.1| (Y18930)
ribosomal protein L7 [Sulfolobus solfataricus]
Length = 158
Score = 118 bits (294), Expect = 3e-26
Identities = 67/154 (43%), Positives = 90/154 (57%), Gaps = 2/154 (1%)
Query: 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAET 63
L +IRIRG + +TL MLRL + ++ T LGML K YITWGEI+ +T
Sbjct: 5 LGIIRIRGWAKAPWYINETLNMLRLRYNFNTMVYPKTSQILGMLNKVSPYITWGEIDPDT 64
Query: 64 LAKLIRKRGRLIGNKPVTDEYVKEKLGM-TIEEFAQKVINGEMSLKDLPN-LKPVFRLHP 121
L LI R + V+D YVKE L + I+ +++ G++ L L K RLHP
Sbjct: 65 LKLLIINRLETVKGDKVSDSYVKEVLKIENIDAMVKQLYEGKIYLHKLDEYFKLPIRLHP 124
Query: 122 PRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
PRGGF+GS KR +K G GYRG+KIN+L+ RM+
Sbjct: 125 PRGGFKGSVKRPYKNKGEFGYRGDKINELMRRMV 158
>sp|P14121|RL30_HALMA 50S RIBOSOMAL PROTEIN L30P (HMAL30) (HL20) (HL16)
>gi|71125|pir||R5HS30 ribosomal protein L30 [validated]
- Haloarcula marismortui >gi|10120939|pdb|1FFK|T Chain
T, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
>gi|48869|emb|CAA41292.1| (X58395) ribosomal protein
[Haloarcula marismortui] >gi|228192|prf||1718307J
ribosomal protein L30 [Haloarcula marismortui]
Length = 154
Score = 108 bits (268), Expect = 3e-23
Identities = 63/153 (41%), Positives = 92/153 (59%), Gaps = 5/153 (3%)
Query: 5 AVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETL 64
A++++RG VN+ ++DTL ML +H VNHC +V +T +Y GM+ K D++ +GE + ETL
Sbjct: 3 ALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETL 62
Query: 65 AKLIRKRGR-LIGNKPVTDEYVKEKLGM-TIEEFAQKVINGEMSLKDLPNLKPVFRLHPP 122
++ R L G+ V DE+V E I A +++ E +L++ L P RLHPP
Sbjct: 63 ETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLRE-QGLSPTLRLHPP 121
Query: 123 RGGFRGSKKRSFKEGGALG-YRGEKINDLIERM 154
RGG G K KEGG LG + E I+DL+E M
Sbjct: 122 RGGHDG-VKHPVKEGGQLGKHDTEGIDDLLEAM 153
>gb|AAG19957.1| (AE005077) 50S ribosomal protein L30P; Rpl30p [Halobacterium sp.
NRC-1]
Length = 154
Score = 100 bits (247), Expect = 8e-21
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 5 AVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETL 64
A++++RG V++ R ++DTL ML +H VNHC +V +T +Y GM+ K DY+ +GE + L
Sbjct: 3 ALVQVRGPVDMSRDIQDTLEMLNIHSVNHCALVPETDTYSGMVAKVNDYVAFGEPSEAVL 62
Query: 65 AKLIRKRGR-LIGNKPVTDEYVKEKLGM-TIEEFAQKVINGEMSLKDLPNLKPVFRLHPP 122
LI RG G V D +V E + + A ++ E +L D L PV RLHPP
Sbjct: 63 TDLIESRGEPASGAGDVDDAWVAEHTEYDDVADLAGALLAEETTLSD-AGLAPVIRLHPP 121
Query: 123 RGGFRGSKKRSFKEGGALG-YRGEKINDLIERM 154
RGG G K + +GG LG + E+I+ L+ M
Sbjct: 122 RGGHDGIKTPA-SDGGQLGKHTTEEIDHLLTDM 153
>gb|AAF52868.1| (AE003627) RpL7 gene product [Drosophila melanogaster]
Length = 252
Score = 81.9 bits (199), Expect = 4e-15
Identities = 57/164 (34%), Positives = 89/164 (53%), Gaps = 11/164 (6%)
Query: 2 AKLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
AKLA V+RIRG V VR L + RL ++N+ V + + + ML+ A+ YITWG N
Sbjct: 90 AKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPN 149
Query: 61 AETLAKLIRKRGRLIGNK---PVTDEYVKE-KLGMT-----IEEFAQKVINGEMSLKDLP 111
+++ +LI KRG + N+ P+TD +V E KL +E+ ++ + K
Sbjct: 150 LKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYAS 209
Query: 112 NLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
N F+L+ P GG+R K + GG G R ++IN L+ +M+
Sbjct: 210 NFLWPFKLNTPTGGWR-KKANHYVNGGDFGNREDQINRLLRKMV 252
>sp|P32100|RL7_DROME 60S RIBOSOMAL PROTEIN L7 >gi|103356|pir||S21500 ribosomal protein
L7.e, cytosolic - fruit fly (Drosophila melanogaster)
(fragment) >gi|8484|emb|CAA33207.1| (X15109) ribosomal
protein [Drosophila melanogaster]
Length = 239
Score = 81.9 bits (199), Expect = 4e-15
Identities = 57/164 (34%), Positives = 89/164 (53%), Gaps = 11/164 (6%)
Query: 2 AKLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
AKLA V+RIRG V VR L + RL ++N+ V + + + ML+ A+ YITWG N
Sbjct: 77 AKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPN 136
Query: 61 AETLAKLIRKRGRLIGNK---PVTDEYVKE-KLGMT-----IEEFAQKVINGEMSLKDLP 111
+++ +LI KRG + N+ P+TD +V E KL +E+ ++ + K
Sbjct: 137 LKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYAS 196
Query: 112 NLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
N F+L+ P GG+R K + GG G R ++IN L+ +M+
Sbjct: 197 NFLWPFKLNTPTGGWR-KKANHYVNGGDFGNREDQINRLLRKMV 239
>sp|P25457|RL7B_SCHPO 60S RIBOSOMAL PROTEIN L7-B >gi|283078|pir||S25067 60s ribosomal
protein L7 subunit - fission yeast (Schizosaccharomyces
pombe) >gi|5070|emb|CAA38729.1| (X54983) ribosomal
protein L7 [Schizosaccharomyces pombe]
>gi|2414648|emb|CAB16592.1| (Z99296) 60s ribosomal
protein L7 subunit [Schizosaccharomyces pombe]
Length = 250
Score = 80.4 bits (195), Expect = 1e-14
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 6 VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLA 65
V+RIRG N+ R + +LRL ++N+ + V + MLQ + Y+T+G N +T+
Sbjct: 93 VVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVR 152
Query: 66 KLIRKRGRLIGNK---PVTDEYVKE-KLG----MTIEEFAQKVINGEMSLKDLPNLKPVF 117
+LI KRG NK P++D + E LG +++E+ ++ + K N F
Sbjct: 153 ELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPF 212
Query: 118 RLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
+L P GG+R K + F EGG G R E IN L+++ML
Sbjct: 213 KLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250
>sp|O01802|RL7_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L7 >gi|7504085|pir||T29034
hypothetical protein F53G12.10 - Caenorhabditis elegans
>gi|2088722|gb|AAB54165.1| (AF003139) strong similarity
to the L30P family of ribosomal proteins [Caenorhabditis
elegans]
Length = 244
Score = 76.9 bits (186), Expect = 1e-13
Identities = 52/158 (32%), Positives = 87/158 (54%), Gaps = 9/158 (5%)
Query: 6 VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLA 65
V+RIRG + R L +LRL ++N+ V V + L +L+ + Y+ WG N +T+
Sbjct: 88 VVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIH 147
Query: 66 KLIRKRG--RLIGNK-PVTDE-YVKEKLG----MTIEEFAQKVINGEMSLKDLPNLKPVF 117
L+ KRG ++ GN+ P+TD V++ LG + +E+ A ++ K+ N F
Sbjct: 148 DLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPF 207
Query: 118 RLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
+L+ P GG+ K F EGG G R ++IN+L+ +M+
Sbjct: 208 KLNNPTGGWT-KKTNHFVEGGDFGNREDQINNLLRKMV 244
>sp|O60143|RL7C_SCHPO 60S RIBOSOMAL PROTEIN L7-C >gi|7490047|pir||T39776 60s ribosomal
protein l7-c - fission yeast (Schizosaccharomyces
pombe) >gi|3006189|emb|CAA18409.1| (AL022304) 60s
ribosomal protein l7-c. [Schizosaccharomyces pombe]
Length = 251
Score = 76.9 bits (186), Expect = 1e-13
Identities = 55/158 (34%), Positives = 83/158 (51%), Gaps = 8/158 (5%)
Query: 6 VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLA 65
VIRIRG N+ R + +LRL ++N+ V V + MLQ + Y+T+G N +T+
Sbjct: 94 VIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVR 153
Query: 66 KLIRKRGRLIGNK---PVTDEYVKE-KLG----MTIEEFAQKVINGEMSLKDLPNLKPVF 117
+L+ KRG NK ++D + E LG ++IE+ ++ + K N F
Sbjct: 154 ELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPF 213
Query: 118 RLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
+L P GG+R K + F EGG G R E IN L+ +ML
Sbjct: 214 QLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
>sp|P11874|RL7_DICDI 60S RIBOSOMAL PROTEIN L7 >gi|71122|pir||R5DO7 ribosomal protein L7
- slime mold (Dictyostelium discoideum)
>gi|7357|emb|CAA33035.1| (X14909) ribosomal protein L7
(AA 1 - 246) [Dictyostelium discoideum]
Length = 246
Score = 74.5 bits (180), Expect = 6e-13
Identities = 57/162 (35%), Positives = 91/162 (55%), Gaps = 10/162 (6%)
Query: 2 AKLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
AK+A VIRIRG V R L +LRL ++N+ V V + + ML+ + Y+ +G N
Sbjct: 85 AKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPN 144
Query: 61 AETLAKLIRKRG--RLIGNK-PVT-DEYVKEKLG----MTIEEFAQKVINGEMSLKDLPN 112
+++ +LI KRG ++ G + P+T ++ V+++LG + +E+ ++ K + N
Sbjct: 145 LKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNN 204
Query: 113 LKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L+ PRGGF KK F +GG G R IN+LI RM
Sbjct: 205 SLWPFKLNCPRGGF-NMKKTPFLQGGDAGNREHLINNLIHRM 245
>sp|P17937|RL7A_SCHPO 60S RIBOSOMAL PROTEIN L7-A >gi|71123|pir||R5BY7 60s ribosomal
protein L7 [similarity] - fission yeast
(Schizosaccharomyces pombe) >gi|295935|emb|CAA37639.1|
(X53575) ribosomal protein L7 [Schizosaccharomyces
pombe] >gi|6692013|emb|CAB65807.1| (AL136235) 60s
ribosomal protein L7-a.2/L8B [Schizosaccharomyces pombe]
Length = 249
Score = 74.1 bits (179), Expect = 8e-13
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAET 63
L VIRI G N+ +R L +LRL R+N+ V V + + ML+ + Y+ +G N +
Sbjct: 90 LFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHS 149
Query: 64 LAKLIRKR--GRLIGNKPVTDE--YVKEKLG----MTIEEFAQKVINGEMSLKDLPNLKP 115
+ +LI KR G++ G + + ++E LG ++IE+ ++ N K++
Sbjct: 150 VRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLW 209
Query: 116 VFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERML 155
F L P + K + F EG GY GE+IN+LI++ +
Sbjct: 210 PFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKKQV 249
>gi|11422788 similar to ribosomal protein L7 (H. sapiens) [Homo sapiens]
>gi|133021|sp|P18124|RL7_HUMAN 60S RIBOSOMAL PROTEIN L7
>gi|71120|pir||R5HU7 ribosomal protein L7, cytosolic -
human >gi|36140|emb|CAA37139.1| (X52967) ribosomal
protein L7 [Homo sapiens]
Length = 248
Score = 71.0 bits (171), Expect = 7e-12
Identities = 57/161 (35%), Positives = 81/161 (49%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 88 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 147
Query: 62 ETLAKLIRKRGRLIGNK---PVTDE-YVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD + LG + +E+ ++ K+ N
Sbjct: 148 KSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF 207
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 208 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 247
>gb|AAA40064.1| (M85235) ribosomal protein [Mus musculus]
Length = 270
Score = 71.0 bits (171), Expect = 7e-12
Identities = 57/161 (35%), Positives = 81/161 (49%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 110 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 169
Query: 62 ETLAKLIRKRGRLIGNK---PVTD-EYVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD + LG + +E+ ++ K+ N
Sbjct: 170 KSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNF 229
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 230 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 269
>gb|AAA03081.1| (L16558) ribosomal protein L7 [Homo sapiens]
Length = 248
Score = 71.0 bits (171), Expect = 7e-12
Identities = 57/161 (35%), Positives = 81/161 (49%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 88 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 147
Query: 62 ETLAKLIRKRGRLIGNK---PVTD-EYVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD + LG + +E+ ++ K+ N
Sbjct: 148 KSVNELIYKRGYGKINKKRIALTDNSLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF 207
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 208 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 247
>sp|P14148|RL7_MOUSE 60S RIBOSOMAL PROTEIN L7
Length = 270
Score = 71.0 bits (171), Expect = 7e-12
Identities = 57/161 (35%), Positives = 81/161 (49%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 110 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 169
Query: 62 ETLAKLIRKRGRLIGNK---PVTD-EYVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD + LG + +E+ ++ K+ N
Sbjct: 170 KSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNF 229
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 230 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 269
>pir||JC4230 ribosomal protein L7 - rat >gi|11383729|pir||R5RTL7 ribosomal
protein L7, cytosolic [validated] - rat
Length = 260
Score = 71.0 bits (171), Expect = 7e-12
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 100 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNL 159
Query: 62 ETLAKLIRKRGRLIGNK---PVTD-EYVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD V LG + +E+ ++ K+ N
Sbjct: 160 KSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNF 219
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 220 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 259
>gb|AAG33073.1|AF175983_1 (AF175983) ribosomal protein L7 [Rana sylvatica]
Length = 242
Score = 69.9 bits (168), Expect = 2e-11
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 82 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRLVEPYIAWGYPNL 141
Query: 62 ETLAKLIRKRGRLIGNK---PVTD-----EYVKEKLGMTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG L K P+TD +Y+++ + +E+ Q++ + N
Sbjct: 142 KSVKQLIYKRGYLKIKKQRIPLTDNSRIEKYLRKTYIICVEDLIQEIYTVGKNFNGANNF 201
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+ P GG + K F EGG G R ++IN L+ ++
Sbjct: 202 LWPFKFSFPGGGMK-KKTTHFVEGGDAGNREDQINRLLRKL 241
>gi|6755356 ribosomal protein L7 [Mus musculus] >gi|91273|pir||A37055 ribosomal
protein L7, cytosolic - mouse >gi|200785|gb|AAA40069.1|
(M29015) ribosomal protein L7 [Mus musculus]
Length = 270
Score = 69.5 bits (167), Expect = 2e-11
Identities = 56/161 (34%), Positives = 81/161 (49%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 110 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 169
Query: 62 ETLAKLIRKRGRLIGNK---PVTD-EYVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD + LG + +E+ ++ K+ N
Sbjct: 170 KSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNF 229
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI +M
Sbjct: 230 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRQM 269
>pir||S30212 ribosomal protein L7 - human >gi|1335288|emb|CAA41026.1| (X57958)
ribosomal protein L7 [Homo sapiens]
Length = 253
Score = 69.5 bits (167), Expect = 2e-11
Identities = 56/161 (34%), Positives = 80/161 (48%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 93 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 152
Query: 62 ETLAKLIRKRGRLIGNK---PVTDE-YVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI K G NK +TD + LG + +E+ ++ K+ N
Sbjct: 153 KSVNELIYKLGYAKINKKQIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF 212
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 213 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 252
>gi|4506659 ribosomal protein L7 [Homo sapiens] >gi|35903|emb|CAA41027.1|
(X57959) ribosomal protein L7 [Homo sapiens]
Length = 248
Score = 68.3 bits (164), Expect = 4e-11
Identities = 56/161 (34%), Positives = 80/161 (48%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI WG N
Sbjct: 88 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNL 147
Query: 62 ETLAKLIRKRGRLIGNK---PVTDE-YVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI K G NK +TD + LG + +E+ ++ K+ N
Sbjct: 148 KSVNELIYKLGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF 207
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 208 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 247
>gb|AAD08846.1| (AC005058) similar to 60S ribosomal protein L7; similar to P18124
(PID:d133021) [Homo sapiens]
Length = 247
Score = 68.3 bits (164), Expect = 4e-11
Identities = 56/161 (34%), Positives = 79/161 (48%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + ML+ + YI WG N
Sbjct: 87 KLAFVIRIRGISGVSPKVRKVLQLLRLRQIYNGTFVKLNKASTNMLRIVEPYIAWGYPNL 146
Query: 62 ETLAKLIRKRGRLIGNK---PVTDE-YVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI K G NK +TD + LG + +E+ ++ K+ N
Sbjct: 147 KSVNELIYKSGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF 206
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 207 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 246
>gi|11422592 similar to ribosomal protein L7 (H. sapiens) [Homo sapiens]
Length = 248
Score = 67.9 bits (163), Expect = 6e-11
Identities = 56/161 (34%), Positives = 80/161 (48%), Gaps = 10/161 (6%)
Query: 3 KLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINA 61
KLA VIRIRG V VR L +LRL ++ + V + + ML+ + YI W N
Sbjct: 88 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWRYPNL 147
Query: 62 ETLAKLIRKRGRLIGNK---PVTDE-YVKEKLG----MTIEEFAQKVINGEMSLKDLPNL 113
+++ +LI KRG NK +TD + LG + +E+ ++ K+ N
Sbjct: 148 KSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNF 207
Query: 114 KPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINDLIERM 154
F+L PRGG + K F EGG G R ++IN LI RM
Sbjct: 208 LWPFKLSSPRGGMK-KKTTHFVEGGDAGNREDQINRLIRRM 247
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57209450
Number of Sequences: 2977
Number of extensions: 2373269
Number of successful extensions: 13235
Number of sequences better than 1.0e-10: 32
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 13174
Number of HSP's gapped (non-prelim): 32
length of query: 155
length of database: 189,106,746
effective HSP length: 52
effective length of query: 103
effective length of database: 157,985,422
effective search space: 16272498466
effective search space used: 16272498466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)