BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2138 (rpl15P) DE:LSU ribosomal protein L15P (rpl15P)
(147 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75145 lsu ribosomal protein l15p (rpl15p) PAB2138 - Pyroco... 302 1e-81
sp|O59441|RL15_PYRHO 50S RIBOSOMAL PROTEIN L15P >gi|7440777|pir|... 279 1e-74
sp|O26133|RL15_METTH 50S RIBOSOMAL PROTEIN L15P >gi|7440772|pir|... 150 6e-36
sp|P54047|RL15_METJA 50S RIBOSOMAL PROTEIN L15P >gi|2119132|pir|... 135 2e-31
sp|P14032|RL15_METVA 50S RIBOSOMAL PROTEIN L15P >gi|71194|pir||R... 116 9e-26
sp|Q9YF98|RL15_AERPE 50S RIBOSOMAL PROTEIN L15P >gi|7440775|pir|... 116 2e-25
sp|O05643|RL15_SULAC 50S RIBOSOMAL PROTEIN L15P >gi|2052268|emb|... 111 5e-24
gb|AAK40997.1| LSU ribosomal protein L15AB (rpl15AB) [Sulfolobus... 102 2e-21
sp|Q9UX85|RL15_SULSO 50S RIBOSOMAL PROTEIN L15P >gi|6015780|emb|... 102 2e-21
gb|AAG19958.1| (AE005077) 50S ribosomal protein L15P; Rpl15p [Ha... 96 2e-19
sp|P12737|RL15_HALMA 50S RIBOSOMAL PROTEIN L15P (HMAL15) (HL9) >... 93 1e-18
pdb|1FFK|J Chain J, Crystal Structure Of The Large Ribosomal Sub... 93 1e-18
gi|11499487 LSU ribosomal protein L15P (rpl15P) [Archaeoglobus f... 88 4e-17
emb|CAC12373.1| (AL445067) ribosomal protein L15 related protein... 82 2e-15
sp|Q00454|RL2A_TETTH 60S RIBOSOMAL PROTEIN L27A (L29) >gi|107880... 73 1e-12
sp|P48160|RL2A_DICDI 60S RIBOSOMAL PROTEIN L27A >gi|7440771|pir|... 73 2e-12
gb|AAA30125.1| (M76719) rpL29 [Tetrahymena thermophila] 72 3e-12
sp|P18445|RL2A_RAT 60S RIBOSOMAL PROTEIN L27A >gi|71190|pir||R5R... 71 5e-12
gi|4506625 ribosomal protein L27a [Homo sapiens] >gi|1173017|sp|... 71 5e-12
sp|P47830|RL2A_XENLA 60S RIBOSOMAL PROTEIN L27A (L22) >gi|530785... 69 2e-11
dbj|BAA77362.1| (AB020237) ribosomal protein L27A [Mus musculus] 69 2e-11
gb|AAA73459.1| (U13207) large subunit ribosomal protein 29 [Eupl... 68 4e-11
sp|P48161|RL2A_EUPCR 60S RIBOSOMAL PROTEIN L27A (L29) 68 4e-11
sp|P14115|RL2A_MOUSE 60S RIBOSOMAL PROTEIN L27A (L29) >gi|71191|... 68 7e-11
sp|Q94530|RL2B_DROME 60S RIBOSOMAL PROTEIN L27A 2 >gi|7440770|pi... 68 7e-11
gb|AAF51006.2| (AE003576) RpL27A gene product [Drosophila melano... 68 7e-11
>pir||B75145 lsu ribosomal protein l15p (rpl15p) PAB2138 - Pyrococcus abyssi
(strain Orsay) >gi|5457751|emb|CAB49241.1| (AJ248284)
LSU ribosomal protein L15P (rpl15P) [Pyrococcus abyssi]
Length = 147
Score = 302 bits (766), Expect = 1e-81
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK
Sbjct: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFADKVLGTGKITK 120
RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFADKVLGTGKITK
Sbjct: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFADKVLGTGKITK 120
Query: 121 PLVIKARAFSSKAEEKIKAAGGEAVLV 147
PLVIKARAFSSKAEEKIKAAGGEAVLV
Sbjct: 121 PLVIKARAFSSKAEEKIKAAGGEAVLV 147
>sp|O59441|RL15_PYRHO 50S RIBOSOMAL PROTEIN L15P >gi|7440777|pir||F71184 probable
ribosomal protein L15 - Pyrococcus horikoshii
>gi|3258186|dbj|BAA30869.1| (AP000007) 150aa long
hypothetical 50S ribosomal protein L15 [Pyrococcus
horikoshii]
Length = 150
Score = 279 bits (705), Expect = 1e-74
Identities = 130/146 (89%), Positives = 141/146 (96%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK
Sbjct: 4 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 63
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFADKVLGTGKITK 120
RGFSRPPEVQR+VR VTLK IDE+L++LLQ GIAYEEEGKI+VDTTQFADKVLGTG++T+
Sbjct: 64 RGFSRPPEVQRDVRIVTLKFIDEHLEDLLQMGIAYEEEGKIVVDTTQFADKVLGTGRLTR 123
Query: 121 PLVIKARAFSSKAEEKIKAAGGEAVL 146
PL IKA+AFS+KAEEKIKAAGGE +L
Sbjct: 124 PLTIKAKAFSAKAEEKIKAAGGEVIL 149
>sp|O26133|RL15_METTH 50S RIBOSOMAL PROTEIN L15P >gi|7440772|pir||C69131 ribosomal
protein L15 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621062|gb|AAB84534.1| (AE000796)
ribosomal protein L27a (E.coli L15) [Methanobacterium
thermoautotrophicum]
Length = 146
Score = 150 bits (376), Expect = 6e-36
Identities = 71/148 (47%), Positives = 102/148 (67%), Gaps = 4/148 (2%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
MIR+R+K+ ++RGS T G GC KK RG G +GGRG AG K + WTW +KY P H GK
Sbjct: 1 MIRKRRKITRMRGSRTVGGGCSKKRRGAGHRGGRGQAGGHKHH---WTWIVKYDPKHFGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFA-DKVLGTGKIT 119
GF RP ++ + + TV L +DE + ELL++G+A EE+G +++D +KVLG+G+IT
Sbjct: 58 YGFKRPQKLIKRLETVNLAYLDEMIPELLERGVASEEDGMVVLDVRDLGFEKVLGSGRIT 117
Query: 120 KPLVIKARAFSSKAEEKIKAAGGEAVLV 147
+P+ +KA FS A EKI+ AGG+A ++
Sbjct: 118 RPVHLKAYEFSRSATEKIEEAGGKAEVI 145
>sp|P54047|RL15_METJA 50S RIBOSOMAL PROTEIN L15P >gi|2119132|pir||E64359 ribosomal
protein L15 - Methanococcus jannaschii
>gi|1591179|gb|AAB98466.1| (U67497) LSU ribosomal
protein L15P (rplO) [Methanococcus jannaschii]
Length = 143
Score = 135 bits (337), Expect = 2e-31
Identities = 70/146 (47%), Positives = 95/146 (64%), Gaps = 6/146 (4%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
MIR++KKV+K+RGS T G G KK RG G+KGGRGMAG +K KWTW IKY PD+ GK
Sbjct: 1 MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAG---GHKHKWTWIIKYCPDYFGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFA-DKVLGTGKIT 119
GF R P + + + T+ + ++E + L +E+ K +VD + +KVLG GK+T
Sbjct: 58 YGFKRHPSLVKRLETINVGELEEIV--LKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVT 115
Query: 120 KPLVIKARAFSSKAEEKIKAAGGEAV 145
P+++KA S KA EKI+A GGE V
Sbjct: 116 IPMIVKAVEVSEKAREKIEAVGGEVV 141
>sp|P14032|RL15_METVA 50S RIBOSOMAL PROTEIN L15P >gi|71194|pir||R6MX15 ribosomal protein
L15 - Methanococcus vannielii >gi|44770|emb|CAA34702.1|
(X16720) rpL15 (AA 1-143) [Methanococcus vannielii]
Length = 143
Score = 116 bits (289), Expect = 9e-26
Identities = 63/146 (43%), Positives = 94/146 (64%), Gaps = 6/146 (4%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
MIR+ KK+ K RGS T G+G KKHRG G +GGRG AG K KW K+ P++ GK
Sbjct: 1 MIRKSKKITKQRGSRTCGYGEAKKHRGAGHRGGRGNAG---HQKHKWLSVCKFNPEYFGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFA-DKVLGTGKIT 119
GF+R P + +++ T+ + ++E + L K ++GK++V+ T+ +K+LG G+I+
Sbjct: 58 YGFNRNPCLIKKLETINVGELEEYV--LKYKDAFKLKDGKVVVNATEIGFEKILGKGRIS 115
Query: 120 KPLVIKARAFSSKAEEKIKAAGGEAV 145
+V+KA FS A+EKI+AAGGE V
Sbjct: 116 TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|Q9YF98|RL15_AERPE 50S RIBOSOMAL PROTEIN L15P >gi|7440775|pir||F72725 probable
ribosomal protein L15 APE0343 - Aeropyrum pernix
(strain K1) >gi|5103982|dbj|BAA79298.1| (AP000059) 158aa
long hypothetical 50S ribosomal protein L15 [Aeropyrum
pernix]
Length = 158
Score = 116 bits (287), Expect = 2e-25
Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 8/150 (5%)
Query: 1 MIRRRKKVRKLRG-SHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLG 59
++RRRKK RKLRG + T WG +HR GSKGG G AG GK +WTWTIKYAP G
Sbjct: 2 VVRRRKKSRKLRGRTRTMSWGRIGQHRKSGSKGGYGAAGLGKH---EWTWTIKYAPTWYG 58
Query: 60 KRGFSRPPEVQR--EVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFA-DKVLGTG 116
K+GF+ PP ++ EV T+ + +DE L +G A +E+GKI+V+ + K+LG G
Sbjct: 59 KKGFN-PPRIRAGLEVTTINVGQLDEIAALLEAQGKAEKEDGKIVVNLEKLGIHKLLGEG 117
Query: 117 KITKPLVIKARAFSSKAEEKIKAAGGEAVL 146
++ +PL + S A +KI+ AGGE ++
Sbjct: 118 RVARPLKVITPLASELAIKKIEEAGGEVIV 147
>sp|O05643|RL15_SULAC 50S RIBOSOMAL PROTEIN L15P >gi|2052268|emb|CAA69099.1| (Y07778)
ribosomal protein L15 [Sulfolobus acidocaldarius]
Length = 144
Score = 111 bits (274), Expect = 5e-24
Identities = 59/147 (40%), Positives = 85/147 (57%), Gaps = 9/147 (6%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
++R+ KK RK RG THGWG K +HR G++GGR + +K KW+WT+K+ GK
Sbjct: 2 VVRKEKKSRKYRGYRTHGWGTKGQHRDRGAQGGRQIG----MHKEKWSWTVKFGEGWYGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFA-DKVLGTGKIT 119
GF P + V + L+ + E +D K EE GK +VD ++ DK+LG G +
Sbjct: 58 HGFRNP--TSKLVNAIGLRKLQEYIDN--DKIKIEEENGKKVVDLAKYGYDKLLGGGNLR 113
Query: 120 KPLVIKARAFSSKAEEKIKAAGGEAVL 146
PLVIK + KA+E++K GGE +L
Sbjct: 114 LPLVIKVAKATEKAKERVKEIGGEIIL 140
>gb|AAK40997.1| LSU ribosomal protein L15AB (rpl15AB) [Sulfolobus solfataricus]
Length = 144
Score = 102 bits (252), Expect = 2e-21
Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 13/149 (8%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
++RR KK RK+RGS T GWG + +HR GS+GGR + +K KW+W +KY GK
Sbjct: 2 VVRREKKSRKMRGSRTMGWGIRGQHRDRGSQGGRQIG----MHKEKWSWLVKYGKGWYGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGI--AYEEEGKIIVDTTQFA-DKVLGTGK 117
GF P + ++L+ L+ELL+ G E +GK IVD + +K+LG G
Sbjct: 58 HGFRNP--TTKLTSAISLR----KLNELLESGYIKIKEMDGKKIVDLNELGYNKLLGGGS 111
Query: 118 ITKPLVIKARAFSSKAEEKIKAAGGEAVL 146
I+ P+ IK ++KA +K+K GGE +L
Sbjct: 112 ISIPVTIKVGKATNKAIQKVKEMGGEVIL 140
>sp|Q9UX85|RL15_SULSO 50S RIBOSOMAL PROTEIN L15P >gi|6015780|emb|CAB57607.1| (Y18930)
ribosomal protein L15 [Sulfolobus solfataricus]
Length = 144
Score = 102 bits (252), Expect = 2e-21
Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 13/149 (8%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
++RR KK RK+RGS T GWG + +HR GS+GGR + +K KW+W +KY GK
Sbjct: 2 VVRREKKSRKMRGSRTMGWGIRGQHRDRGSQGGRQIG----MHKEKWSWLVKYGKGWYGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDENLDELLQKGI--AYEEEGKIIVDTTQFA-DKVLGTGK 117
GF P + ++L+ L+ELL+ G E +GK IVD + +K+LG G
Sbjct: 58 HGFRNP--TTKLTSAISLR----KLNELLESGYIKIKEMDGKKIVDLNELGYNKLLGGGS 111
Query: 118 ITKPLVIKARAFSSKAEEKIKAAGGEAVL 146
I+ P+ IK ++KA +K+K GGE +L
Sbjct: 112 ISIPVTIKVGKATNKAIQKVKEMGGEVIL 140
>gb|AAG19958.1| (AE005077) 50S ribosomal protein L15P; Rpl15p [Halobacterium sp.
NRC-1]
Length = 153
Score = 95.6 bits (234), Expect = 2e-19
Identities = 55/148 (37%), Positives = 80/148 (53%), Gaps = 16/148 (10%)
Query: 7 KVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRP 66
K R+ RGS THG G K RG G++GGRG AG K + + + +GK GF RP
Sbjct: 4 KKRRQRGSRTHGGGTHKNRRGAGNRGGRGRAGRKKHEQHNY--------EDVGKSGFKRP 55
Query: 67 PEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFAD--------KVLGTGKI 118
+ R+V ++++ +DE++ L + G+A E E VD D KVLG G++
Sbjct: 56 EKTDRDVAVLSVQELDEDIPVLSESGVAEETEFGYRVDARDVVDDGWDADVVKVLGGGQL 115
Query: 119 TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
+ L + A AFS A E I+ GG+AV+
Sbjct: 116 YEQLEVTADAFSDAAVELIEGEGGDAVV 143
>sp|P12737|RL15_HALMA 50S RIBOSOMAL PROTEIN L15P (HMAL15) (HL9) >gi|2144773|pir||R6HS15
ribosomal protein L15 [validated] - Haloarcula
marismortui >gi|43608|emb|CAA44837.1| (X63127) Hmal15
[Haloarcula marismortui]
Length = 165
Score = 93.2 bits (228), Expect = 1e-18
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 7 KVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRP 66
K ++ RGS THG G K RG G +GGRG AG R+K ++ + + LGK GF RP
Sbjct: 4 KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAG---RDKHEF-----HNHEPLGKSGFKRP 55
Query: 67 PEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFAD--------KVLGTGKI 118
+VQ E T+ ++ IDEN+ L +A E+G VD + KVLG G++
Sbjct: 56 QKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQV 115
Query: 119 TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
L + A FS A EK++ AGG L
Sbjct: 116 RHELTLIADDFSEGAREKVEGAGGSVEL 143
>pdb|1FFK|J Chain J, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 164
Score = 93.2 bits (228), Expect = 1e-18
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 7 KVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRP 66
K ++ RGS THG G K RG G +GGRG AG R+K ++ + + LGK GF RP
Sbjct: 3 KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAG---RDKHEF-----HNHEPLGKSGFKRP 54
Query: 67 PEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFAD--------KVLGTGKI 118
+VQ E T+ ++ IDEN+ L +A E+G VD + KVLG G++
Sbjct: 55 QKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQV 114
Query: 119 TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
L + A FS A EK++ AGG L
Sbjct: 115 RHELTLIADDFSEGAREKVEGAGGSVEL 142
>gi|11499487 LSU ribosomal protein L15P (rpl15P) [Archaeoglobus fulgidus]
>gi|3914684|sp|O28376|RL15_ARCFU 50S RIBOSOMAL PROTEIN
L15P >gi|7440773|pir||F69487 LSU ribosomal protein L15P
(rpl15P) homolog - Archaeoglobus fulgidus
>gi|2648636|gb|AAB89346.1| (AE000971) LSU ribosomal
protein L15P (rpl15P) [Archaeoglobus fulgidus]
Length = 179
Score = 88.2 bits (215), Expect = 4e-17
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 5 RKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFS 64
+KKV+K RGS T GWG K RG G++GG G AG K K+ K GK GF+
Sbjct: 6 KKKVKKFRGSRTFGWGSHKNRRGRGNRGGAGNAGVHKHKYIKFVKLAKKGEYLFGKHGFT 65
Query: 65 RPPEVQREVRTV-----TLK-------------------------SIDENLDELLQKGIA 94
RP ++++ V TL+ +DE +D L G+A
Sbjct: 66 RPKILRKDYLNVQAVKETLRWLKEEGKLDDYTYRYLYSRPELNAGDLDEIIDRLASLGLA 125
Query: 95 YEEEGKIIVDTTQFA-DKVLGTGKITKPLVIKARAFSSKAEEKIKAAGGEAV 145
+E +D + K+LG+GK+T+ + +K + KA EKI+AAGG+ V
Sbjct: 126 EKEGDVYRIDLAELGYSKLLGSGKVTRKMEVKVFEATPKAVEKIEAAGGKVV 177
>emb|CAC12373.1| (AL445067) ribosomal protein L15 related protein [Thermoplasma
acidophilum]
Length = 144
Score = 82.3 bits (200), Expect = 2e-15
Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 5 RKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFS 64
R++ +KLRG H +G G K RG G KGG G AG GK KW W +KY P H G +GF+
Sbjct: 3 RERTKKLRGGH-YGRGFKAG-RGKGKKGGSGNAGMGKH---KWIWMVKYDPLHFGGKGFT 57
Query: 65 RPPEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFA-DKVLGTGKITKPLV 123
Q EV + L ++ + L + G EE G+IIVD DK+LG G T
Sbjct: 58 SHHISQVEV-PINLGDVEYMYESLKRDGFVREENGEIIVDLRAAGYDKLLGNGNFTVKST 116
Query: 124 IKARAFSSKAEEKIKAAGGE 143
I + KA K+ A G +
Sbjct: 117 IIIDKATEKAISKLSAIGSK 136
>sp|Q00454|RL2A_TETTH 60S RIBOSOMAL PROTEIN L27A (L29) >gi|1078807|pir||A56403 ribosomal
protein L27a.e - Tetrahymena thermophila
>gi|161842|gb|AAA30124.1| (M76718) rpL29 [Tetrahymena
thermophila]
Length = 149
Score = 73.4 bits (177), Expect = 1e-12
Identities = 52/151 (34%), Positives = 82/151 (53%), Gaps = 9/151 (5%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M+ KK RKLRG +HG G KHR GG +GGRG AG ++ K+ P + GK
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILME---KWHPGYYGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDEN---LDELLQKGIAYEEEGKIIVDTTQFAD-KVLGTG 116
G R +++ + +ID+ + + ++ A +++ ++D T+ KVLG G
Sbjct: 58 LGM-RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKG 116
Query: 117 KI-TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
++ +P+V+KA+ FS AE +I A GG VL
Sbjct: 117 RLPNQPVVVKAKYFSKTAERRIVAVGGACVL 147
>sp|P48160|RL2A_DICDI 60S RIBOSOMAL PROTEIN L27A >gi|7440771|pir||JE0320 ribosomal
protein Ddl27a - slime mold (Dictyostelium discoideum)
>gi|790954|dbj|BAA08873.1| (D50338) ribosomal protein
[Dictyostelium discoideum]
Length = 148
Score = 73.0 bits (176), Expect = 2e-12
Identities = 58/152 (38%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M R K RK RG G+G KHR GGRG AG ++ + KY P + GK
Sbjct: 1 MPTRFSKHRKSRGDVCAGYGRVGKHRK--HPGGRGNAGGLTHHRINFD---KYHPGYFGK 55
Query: 61 RGFSRPPEVQREVR--TVTLKSIDENLDELLQKGIAYEEEGKI-IVDTTQFAD-KVLGTG 116
G ++ + TV+L+ I + E ++K +A + +G +VD TQ KVLG G
Sbjct: 56 LGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHG 115
Query: 117 KI-TKPLVIKARAFSSKAEEKIKAAGGEAVLV 147
+ T+P+++KAR FS AE+KIKA GG +LV
Sbjct: 116 ILPTQPIIVKARYFSKVAEKKIKAVGGACILV 147
>gb|AAA30125.1| (M76719) rpL29 [Tetrahymena thermophila]
Length = 149
Score = 72.2 bits (174), Expect = 3e-12
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M+ +K RKLRG +HG G KHR GG +GGRG AG ++ K+ P + GK
Sbjct: 1 MVSHLRKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILME---KWHPGYYGK 57
Query: 61 RGFSRPPEVQREVRTVTLKSIDE----NLDELLQKGIAYEEEGKIIVDTTQFADKVLGTG 116
G R +++ + +ID+ D QK +++ +I T KVLG G
Sbjct: 58 LGM-RTFHLKKNPLHCPVVNIDKLWRKETDATRQKYAEDKKKVPVIDVTKAGFFKVLGKG 116
Query: 117 KI-TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
++ +P+V+KA+ FS AE +I A GG VL
Sbjct: 117 RLPNQPVVVKAKYFSKTAERRIVAVGGACVL 147
>sp|P18445|RL2A_RAT 60S RIBOSOMAL PROTEIN L27A >gi|71190|pir||R5RTLA ribosomal protein
L27a, cytosolic [validated] - rat
>gi|57696|emb|CAA36947.1| (X52733) ribosomal protein
L27a (AA 1 - 148) [Rattus rattus]
>gi|227227|prf||1617101A ribosomal protein L27a [Rattus
norvegicus]
Length = 148
Score = 71.4 bits (172), Expect = 5e-12
Identities = 59/153 (38%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M R +K RKLRG +HG G KHR GGRG AG ++ + KY P + GK
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRK--HPGGRGNAGGMHHHRINFD---KYHPGYFGK 55
Query: 61 RGFSRPPEVQREVR---TVTLKSIDENLDELLQKGIAYEEEGKI-IVDTTQFAD-KVLGT 115
G R ++R TV L + + E + A + G I+D + KVLG
Sbjct: 56 VGM-RHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGK 114
Query: 116 GKITK-PLVIKARAFSSKAEEKIKAAGGEAVLV 147
GK+ K P+++KA+ FS +AEEKIK GG VLV
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLV 147
>gi|4506625 ribosomal protein L27a [Homo sapiens]
>gi|1173017|sp|P46776|RL2A_HUMAN 60S RIBOSOMAL PROTEIN
L27A >gi|1362930|pir||S55914 ribosomal protein L27a -
human >gi|550017|gb|AAA85656.1| (U14968) ribosomal
protein L27a [Homo sapiens] >gi|4760602|dbj|BAA77361.1|
(AB020236) ribosomal protein L27A [Homo sapiens]
>gi|1096940|prf||2113200C ribosomal protein L27a [Homo
sapiens]
Length = 148
Score = 71.4 bits (172), Expect = 5e-12
Identities = 58/152 (38%), Positives = 77/152 (50%), Gaps = 10/152 (6%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M R +K RKLRG +HG G KHR GGRG AG ++ + KY P + GK
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRK--HPGGRGNAGGLHHHRINFD---KYHPGYFGK 55
Query: 61 RGFSRP--PEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKI-IVDTTQFAD-KVLGTG 116
G Q TV L + + E + A + G I+D + KVLG G
Sbjct: 56 VGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKG 115
Query: 117 KITK-PLVIKARAFSSKAEEKIKAAGGEAVLV 147
K+ K P+++KA+ FS +AEEKIK+ GG VLV
Sbjct: 116 KLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P47830|RL2A_XENLA 60S RIBOSOMAL PROTEIN L27A (L22) >gi|530785|emb|CAA45531.1|
(X64207) ribosomal protein L22 [Xenopus laevis]
>gi|1095557|prf||2109274A ribosomal protein L22 [Xenopus
laevis]
Length = 148
Score = 69.5 bits (167), Expect = 2e-11
Identities = 57/151 (37%), Positives = 76/151 (49%), Gaps = 10/151 (6%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M + +K RKLRG +HG G KHR GGRG AG ++ + KY P + GK
Sbjct: 1 MPSKLRKTRKLRGHVSHGHGRIGKHRK--HPGGRGNAGGMHHHRINFD---KYHPGYFGK 55
Query: 61 RGFSRP--PEVQREVRTVTLKSIDENLDELLQKGIAYEEEGKI-IVDTTQFAD-KVLGTG 116
G + Q T+ L + + E + A EG I+D KVLG G
Sbjct: 56 VGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKG 115
Query: 117 KITK-PLVIKARAFSSKAEEKIKAAGGEAVL 146
K+ K P+++KA+ FS KAEEKIK+ GG VL
Sbjct: 116 KLPKQPVIVKAKFFSRKAEEKIKSVGGACVL 146
>dbj|BAA77362.1| (AB020237) ribosomal protein L27A [Mus musculus]
Length = 148
Score = 69.1 bits (166), Expect = 2e-11
Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M R +K RKLRG +HG G KHR GGRG AG ++ + KY P + GK
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRK--HPGGRGNAGGMHHHRINFD---KYHPGYFGK 55
Query: 61 RGFSRPPEVQREVRTVTLKSIDEN---LDELLQKGIAYEEEGKI-IVDTTQFAD-KVLGT 115
G R ++R ++D+ + E + A + G I+D + KVLG
Sbjct: 56 VGM-RHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGK 114
Query: 116 GKITK-PLVIKARAFSSKAEEKIKAAGGEAVLV 147
GK+ K P+++KA+ FS +AEEKIK GG VLV
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLV 147
>gb|AAA73459.1| (U13207) large subunit ribosomal protein 29 [Euplotes crassus]
>gi|1093613|prf||2104279A ribosomal protein L29
[Euplotes crassus]
Length = 147
Score = 68.3 bits (164), Expect = 4e-11
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M ++ RKLRG +HG G KHR GGRGMAG ++ KY P H+GK
Sbjct: 1 MTHSKRNTRKLRGHVSHGHGRVGKHRK--HPGGRGMAGPEHHHRIN---VFKYHPGHIGK 55
Query: 61 RGFSRPPEVQREVR--TVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFAD-KVLGTGK 117
G ++ + ++ L + + E ++ ++ I++D + KVLG G
Sbjct: 56 HGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGL 115
Query: 118 ITK-PLVIKARAFSSKAEEKIKAAGGEAVL 146
+ + PLV+KA+ F+ AE++IK GG VL
Sbjct: 116 LPEVPLVVKAKLFTPTAEKRIKQVGGACVL 145
>sp|P48161|RL2A_EUPCR 60S RIBOSOMAL PROTEIN L27A (L29)
Length = 148
Score = 68.3 bits (164), Expect = 4e-11
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M ++ RKLRG +HG G KHR GGRGMAG ++ KY P H+GK
Sbjct: 1 MTHSKRNTRKLRGHVSHGHGRVGKHRK--HPGGRGMAGPEHHHRIN---VFKYHPGHIGK 55
Query: 61 RGFSRPPEVQREVR--TVTLKSIDENLDELLQKGIAYEEEGKIIVDTTQFAD-KVLGTGK 117
G ++ + ++ L + + E ++ ++ I++D + KVLG G
Sbjct: 56 HGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGL 115
Query: 118 ITK-PLVIKARAFSSKAEEKIKAAGGEAVL 146
+ + PLV+KA+ F+ AE++IK GG VL
Sbjct: 116 LPEVPLVVKAKLFTPTAEKRIKQVGGACVL 145
>sp|P14115|RL2A_MOUSE 60S RIBOSOMAL PROTEIN L27A (L29) >gi|71191|pir||R5MS27 ribosomal
protein L27a - mouse >gi|50321|emb|CAA28678.1| (X05021)
URF (homologous to yeast L29 ribosomal protein) [Mus
musculus]
Length = 148
Score = 67.5 bits (162), Expect = 7e-11
Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGK 60
M R +K RKLRG +HG G KHR S GRG AG ++ + KY P + GK
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPS--GRGNAGGMHHHRINFD---KYHPGYFGK 55
Query: 61 RGFSRPPEVQREVRTVTLKSIDEN---LDELLQKGIAYEEEGKI-IVDTTQFAD-KVLGT 115
G R ++R ++D+ + E + A + G I+D + KVLG
Sbjct: 56 VGM-RHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGK 114
Query: 116 GKITK-PLVIKARAFSSKAEEKIKAAGGEAVLV 147
GK+ K P+++KA+ FS +AEEKIK GG VLV
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLV 147
>sp|Q94530|RL2B_DROME 60S RIBOSOMAL PROTEIN L27A 2 >gi|7440770|pir||JC6202 ribosomal
protein L27a - fruit fly (Drosophila melanogaster)
>gi|1575561|gb|AAC47472.1| (U66358) RpL27a [Drosophila
melanogaster] >gi|1881581|gb|AAC47475.1| (U66357)
ribosomal protein RpL27a [Drosophila melanogaster]
Length = 149
Score = 67.5 bits (162), Expect = 7e-11
Identities = 56/153 (36%), Positives = 82/153 (52%), Gaps = 20/153 (13%)
Query: 4 RRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGF 63
+RKK RKLRG +HG G KHR GGRG AG ++ + KY P + GK G
Sbjct: 5 KRKKTRKLRGHVSHGHGRIGKHRK--HPGGRGNAGGMHHHRINFD---KYHPGYFGKVGM 59
Query: 64 SRPPEVQREVRTVTLKSIDENLDEL-----LQKGIAYEEEGKI---IVDTTQFAD-KVLG 114
R ++R+ + + NLD+L +K E+E ++D +F K+LG
Sbjct: 60 -RNFHLRRQHKFRP----EINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLG 114
Query: 115 TGKI-TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
G + +P+++KA+ FS KAE+KIK AGG +L
Sbjct: 115 RGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLL 147
>gb|AAF51006.2| (AE003576) RpL27A gene product [Drosophila melanogaster]
Length = 282
Score = 67.5 bits (162), Expect = 7e-11
Identities = 56/153 (36%), Positives = 82/153 (52%), Gaps = 20/153 (13%)
Query: 4 RRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGF 63
+RKK RKLRG +HG G KHR GGRG AG ++ + KY P + GK G
Sbjct: 138 KRKKTRKLRGHVSHGHGRIGKHRK--HPGGRGNAGGMHHHRINFD---KYHPGYFGKVGM 192
Query: 64 SRPPEVQREVRTVTLKSIDENLDEL-----LQKGIAYEEEGKI---IVDTTQFAD-KVLG 114
R ++R+ + + NLD+L +K E+E ++D +F K+LG
Sbjct: 193 -RNFHLRRQHKFRP----EINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLG 247
Query: 115 TGKI-TKPLVIKARAFSSKAEEKIKAAGGEAVL 146
G + +P+++KA+ FS KAE+KIK AGG +L
Sbjct: 248 RGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLL 280
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.135 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58617166
Number of Sequences: 2977
Number of extensions: 2566521
Number of successful extensions: 8355
Number of sequences better than 1.0e-10: 26
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8305
Number of HSP's gapped (non-prelim): 28
length of query: 147
length of database: 189,106,746
effective HSP length: 54
effective length of query: 93
effective length of database: 156,788,448
effective search space: 14581325664
effective search space used: 14581325664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 161 (67.1 bits)