BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2141 (PAB2141) DE:Hypothetical protein
(175 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75144 hypothetical protein PAB2141 - Pyrococcus abyssi (st... 365 e-100
pir||C71184 hypothetical protein PH1752 - Pyrococcus horikoshii ... 336 1e-91
sp|Q57904|Y480_METJA HYPOTHETICAL PROTEIN MJ0480 >gi|2128335|pir... 92 3e-18
pir||D69135 conserved hypothetical protein MTH28 - Methanobacter... 90 2e-17
>pir||G75144 hypothetical protein PAB2141 - Pyrococcus abyssi (strain Orsay)
>gi|5457748|emb|CAB49238.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 175
Score = 365 bits (926), Expect = e-100
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MLEGIYLALDELFGPMLKSTHPMWVVTVAGIILGAFFVFLNYVFVDQEKMKRLQKMAREF 60
MLEGIYLALDELFGPMLKSTHPMWVVTVAGIILGAFFVFLNYVFVDQEKMKRLQKMAREF
Sbjct: 1 MLEGIYLALDELFGPMLKSTHPMWVVTVAGIILGAFFVFLNYVFVDQEKMKRLQKMAREF 60
Query: 61 QEEFKKARESGDEKKLKKLQQKQLEILRMQNELMKDAFFKPMLISWPIIIIFWGWLRRWY 120
QEEFKKARESGDEKKLKKLQQKQLEILRMQNELMKDAFFKPMLISWPIIIIFWGWLRRWY
Sbjct: 61 QEEFKKARESGDEKKLKKLQQKQLEILRMQNELMKDAFFKPMLISWPIIIIFWGWLRRWY 120
Query: 121 FEVAIVKYPFNFFLFDIFHKMYHSALRPDELGYFGWYFLTSYVVGSVLRKILDMA 175
FEVAIVKYPFNFFLFDIFHKMYHSALRPDELGYFGWYFLTSYVVGSVLRKILDMA
Sbjct: 121 FEVAIVKYPFNFFLFDIFHKMYHSALRPDELGYFGWYFLTSYVVGSVLRKILDMA 175
>pir||C71184 hypothetical protein PH1752 - Pyrococcus horikoshii
>gi|3258183|dbj|BAA30866.1| (AP000007) 175aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 175
Score = 336 bits (852), Expect = 1e-91
Identities = 153/175 (87%), Positives = 169/175 (96%)
Query: 1 MLEGIYLALDELFGPMLKSTHPMWVVTVAGIILGAFFVFLNYVFVDQEKMKRLQKMAREF 60
MLEGIYLALD++FGPML++THPMWVVTV+G+ILGAFFV LNY VDQEKMKRLQKMA+E
Sbjct: 1 MLEGIYLALDKMFGPMLRNTHPMWVVTVSGVILGAFFVLLNYFLVDQEKMKRLQKMAKEL 60
Query: 61 QEEFKKARESGDEKKLKKLQQKQLEILRMQNELMKDAFFKPMLISWPIIIIFWGWLRRWY 120
QEEFKKARESGDEKKL+KLQQKQLE+LR+QNELMKDAF KPMLI+WPIIIIFWGWL+RWY
Sbjct: 61 QEEFKKARESGDEKKLRKLQQKQLELLRLQNELMKDAFLKPMLITWPIIIIFWGWLKRWY 120
Query: 121 FEVAIVKYPFNFFLFDIFHKMYHSALRPDELGYFGWYFLTSYVVGSVLRKILDMA 175
FE AIVKYPFNFFLFDIFHKMYHSAL+PDELGYFGWYFLTSYVVG++LRK+LDMA
Sbjct: 121 FETAIVKYPFNFFLFDIFHKMYHSALKPDELGYFGWYFLTSYVVGTILRKVLDMA 175
>sp|Q57904|Y480_METJA HYPOTHETICAL PROTEIN MJ0480 >gi|2128335|pir||H64359 hypothetical
protein MJ0480 - Methanococcus jannaschii
>gi|1591183|gb|AAB98471.1| (U67498) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 198
Score = 92.4 bits (226), Expect = 3e-18
Identities = 60/189 (31%), Positives = 97/189 (50%), Gaps = 25/189 (13%)
Query: 6 YLALDELFGPMLKSTHPMWVVTVAGIILGAFFVFLNYVFVDQEKMKRLQKMAREFQEEFK 65
Y LD +F P++K HP + + II+ + VDQ+++ L+K +EFQ +FK
Sbjct: 10 YKTLDAIFMPIIKVLHPALAILIIAIIVSLIINIATKLLVDQKRVAELKKEIQEFQVKFK 69
Query: 66 KARESGDEKKLKKLQQKQLEILRMQNELMKDAFFKPMLISWPIIIIFWGWLRRWY----- 120
K S + + ++KLQ++Q I+++ ELMK + F+PM+ +W II+ + +LR Y
Sbjct: 70 KM--SKNPEMMEKLQEEQQRIMQLNAELMKMS-FRPMIYTWVPIILIFIYLRHVYGFGGV 126
Query: 121 -------FEVAIVKYP----------FNFFLFDIFHKMYHSALRPDELGYFGWYFLTSYV 163
+ +V P F +L IF+K + LG+ GWY L S+
Sbjct: 127 YQELNPGWNGVVVYLPIILSKILFIDFWHWLGSIFYKGGFKIVSNTALGWLGWYILCSFA 186
Query: 164 VGSVLRKIL 172
+VLRKIL
Sbjct: 187 TSTVLRKIL 195
>pir||D69135 conserved hypothetical protein MTH28 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621065|gb|AAB84537.1| (AE000796) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 188
Score = 89.7 bits (219), Expect = 2e-17
Identities = 54/186 (29%), Positives = 102/186 (54%), Gaps = 15/186 (8%)
Query: 1 MLEGIYLALDELFGPML----KSTHPMWVVTVAGIILGAFFVFLNYVFVDQEKMKRLQKM 56
+LE +Y AL+ +FGP + +P+ V + I+ N + VDQE+++ L+
Sbjct: 2 VLEIVYGALNAVFGPFIAMDPNPQNPILTVFLISAIVAFVITLANKLLVDQERLEELKVE 61
Query: 57 AREFQEEFKKARESGDEKKLKKLQQKQLEILRMQNELMKDAFFKPMLISW-PIIIIFWGW 115
+EFQ+E +AR+ D L+++Q+KQ+E + Q E+M + FKPM++++ PII++F+
Sbjct: 62 MQEFQQEMMEARKKNDMAALEEIQKKQMEFMDKQREMMTMS-FKPMIVTFIPIILVFYWM 120
Query: 116 LRRWYFEVAIVKYP---FNFFLFDIFHKMYHSALRPD----ELGYFGWYFLTSYVVGSVL 168
+ + +V P + L ++H Y + P+ +G+ GWY L S+ + +
Sbjct: 121 GQEPHIVNTLVILPQIAYYVLLVPLWHMFY--GMPPNAPSYAIGWLGWYILCSFAMSQIF 178
Query: 169 RKILDM 174
RK + +
Sbjct: 179 RKFMGL 184
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.145 0.461
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63781346
Number of Sequences: 2977
Number of extensions: 2486838
Number of successful extensions: 16310
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16302
Number of HSP's gapped (non-prelim): 4
length of query: 175
length of database: 189,106,746
effective HSP length: 47
effective length of query: 128
effective length of database: 160,977,857
effective search space: 20605165696
effective search space used: 20605165696
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 162 (67.5 bits)