BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2143 (PAB2143) DE:Hypothetical protein
         (200 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75144 hypothetical protein PAB2143 - Pyrococcus abyssi (st...   427  e-119
pir||F71183 hypothetical protein PH1747 - Pyrococcus horikoshii ...   330  8e-90

>pir||A75144 hypothetical protein PAB2143 - Pyrococcus abyssi (strain Orsay)
           >gi|5457742|emb|CAB49232.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 200
           
 Score =  427 bits (1086), Expect = e-119
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MIKFYASEALICPRRVWFRIKGFPEMWPEVAKPRLEKGVEIHEILGKFLLEKFNVELEKS 60
           MIKFYASEALICPRRVWFRIKGFPEMWPEVAKPRLEKGVEIHEILGKFLLEKFNVELEKS
Sbjct: 1   MIKFYASEALICPRRVWFRIKGFPEMWPEVAKPRLEKGVEIHEILGKFLLEKFNVELEKS 60

Query: 61  VILRLPKLKMEIHGRIDAYKDVPIEIKGKSYMPKVPIEYHLAQLNLYLRGVEADYGYLYY 120
           VILRLPKLKMEIHGRIDAYKDVPIEIKGKSYMPKVPIEYHLAQLNLYLRGVEADYGYLYY
Sbjct: 61  VILRLPKLKMEIHGRIDAYKDVPIEIKGKSYMPKVPIEYHLAQLNLYLRGVEADYGYLYY 120

Query: 121 IKLGGDPWKIINGLEVDEFPYIRGQNVKVFEVPYDVELFKETIKYFYEIKLFLEEDKLPP 180
           IKLGGDPWKIINGLEVDEFPYIRGQNVKVFEVPYDVELFKETIKYFYEIKLFLEEDKLPP
Sbjct: 121 IKLGGDPWKIINGLEVDEFPYIRGQNVKVFEVPYDVELFKETIKYFYEIKLFLEEDKLPP 180

Query: 181 AWRGPHCNFCPYKYLCQNTL 200
           AWRGPHCNFCPYKYLCQNTL
Sbjct: 181 AWRGPHCNFCPYKYLCQNTL 200


>pir||F71183 hypothetical protein PH1747 - Pyrococcus horikoshii
           >gi|3258178|dbj|BAA30861.1| (AP000007) 217aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 217
           
 Score =  330 bits (837), Expect = 8e-90
 Identities = 144/196 (73%), Positives = 170/196 (86%)

Query: 1   MIKFYASEALICPRRVWFRIKGFPEMWPEVAKPRLEKGVEIHEILGKFLLEKFNVELEKS 60
           MI+FYASEALICPRRVWFR+KG PE WPEVAKPRLEKG++IHE+LGK L ++F+VELEKS
Sbjct: 16  MIEFYASEALICPRRVWFRLKGIPEKWPEVAKPRLEKGMKIHEVLGKVLKDRFDVELEKS 75

Query: 61  VILRLPKLKMEIHGRIDAYKDVPIEIKGKSYMPKVPIEYHLAQLNLYLRGVEADYGYLYY 120
           VI+R PKL MEIHG+ID YK+ PIEIKGKSY+P  PI+YHLAQLNLYLRGV A+YGYLYY
Sbjct: 76  VIIRFPKLGMEIHGKIDVYKEFPIEIKGKSYIPSSPIDYHLAQLNLYLRGVNAEYGYLYY 135

Query: 121 IKLGGDPWKIINGLEVDEFPYIRGQNVKVFEVPYDVELFKETIKYFYEIKLFLEEDKLPP 180
           +KL  DPW+ I+ +  D FP I+G  +K+FEVPYD  LFKET+KYFYEIKL+LE D+LPP
Sbjct: 136 VKLTDDPWRAISDIVFDSFPLIKGNGLKIFEVPYDEVLFKETVKYFYEIKLYLENDELPP 195

Query: 181 AWRGPHCNFCPYKYLC 196
           AW+GPHC FCPY Y+C
Sbjct: 196 AWKGPHCKFCPYNYIC 211


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.147    0.466 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81574412
Number of Sequences: 2977
Number of extensions: 3522217
Number of successful extensions: 7062
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7060
Number of HSP's gapped (non-prelim): 2
length of query: 200
length of database: 189,106,746
effective HSP length: 47
effective length of query: 153
effective length of database: 160,977,857
effective search space: 24629612121
effective search space used: 24629612121
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)