BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2144 316608 316294 -105 !not a gene!
         (105 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71183 hypothetical protein PH1745 - Pyrococcus horikoshii ...    99  2e-20

>pir||D71183 hypothetical protein PH1745 - Pyrococcus horikoshii
           >gi|3258176|dbj|BAA30859.1| (AP000007) 124aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 124
           
 Score = 98.7 bits (242), Expect = 2e-20
 Identities = 53/105 (50%), Positives = 59/105 (55%)

Query: 1   MNIFSRVCLFSSDILLITFSMYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSI 60
           +  F  + LFSSDILLITFS+YV                                   SI
Sbjct: 20  LKTFLTISLFSSDILLITFSIYVSTNILTSSNSLFSSINSFILSSSSCKNSASSFILISI 79

Query: 61  GSVDFISSLACSYSGLFLMSFGSYISEPNSVGVRRISNLSPLFIM 105
           GS DFISSLACSYSGLFL+S GSYISEP  VGVR ISNL+PL I+
Sbjct: 80  GSTDFISSLACSYSGLFLISLGSYISEPKRVGVRSISNLNPLLII 124


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.141    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21905418
Number of Sequences: 2977
Number of extensions: 442901
Number of successful extensions: 1294
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 189,106,746
effective HSP length: 52
effective length of query: 53
effective length of database: 157,985,422
effective search space: 8373227366
effective search space used: 8373227366
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 159 (66.3 bits)