BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2152 (PAB2152) DE:Hypothetical protein
(385 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 762 0.0
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 114 2e-24
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 113 5e-24
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 111 1e-23
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 108 9e-23
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 103 3e-21
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 99 8e-20
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 96 5e-19
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 96 7e-19
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 90 5e-17
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 88 2e-16
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 88 2e-16
gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfat... 84 2e-15
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 84 3e-15
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 83 6e-15
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 81 2e-14
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 80 3e-14
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 762 bits (1946), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MSSQRGAKFIKEPPEVLRGVSMPRPKRRTPLFFDQRPRTLPEQLFGREEEVEKLFRALEA 60
MSSQRGAKFIKEPPEVLRGVSMPRPKRRTPLFFDQRPRTLPEQLFGREEEVEKLFRALEA
Sbjct: 1 MSSQRGAKFIKEPPEVLRGVSMPRPKRRTPLFFDQRPRTLPEQLFGREEEVEKLFRALEA 60
Query: 61 GSWVAVLGPRMVGKTSLALAGANEFAKENGYNVVLVDLRDTETFREATEKILGRLPRSIL 120
GSWVAVLGPRMVGKTSLALAGANEFAKENGYNVVLVDLRDTETFREATEKILGRLPRSIL
Sbjct: 61 GSWVAVLGPRMVGKTSLALAGANEFAKENGYNVVLVDLRDTETFREATEKILGRLPRSIL 120
Query: 121 DSISEYLSSISEVSAKGAGAGLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGV 180
DSISEYLSSISEVSAKGAGAGLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGV
Sbjct: 121 DSISEYLSSISEVSAKGAGAGLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGV 180
Query: 181 PHFLKALGAVFNENHSLQIIFTGSYSGVVRRLFEATYSDESYGRPPISIMLTPWRESVAE 240
PHFLKALGAVFNENHSLQIIFTGSYSGVVRRLFEATYSDESYGRPPISIMLTPWRESVAE
Sbjct: 181 PHFLKALGAVFNENHSLQIIFTGSYSGVVRRLFEATYSDESYGRPPISIMLTPWRESVAE 240
Query: 241 DFLRTGFEKLGVPYEEWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKE 300
DFLRTGFEKLGVPYEEWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKE
Sbjct: 241 DFLRTGFEKLGVPYEEWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKE 300
Query: 301 AKSELENILEGRSPKARKVVRLLAFGASWGDLIKTGISEDALSRLLGILMDELFILNKDD 360
AKSELENILEGRSPKARKVVRLLAFGASWGDLIKTGISEDALSRLLGILMDELFILNKDD
Sbjct: 301 AKSELENILEGRSPKARKVVRLLAFGASWGDLIKTGISEDALSRLLGILMDELFILNKDD 360
Query: 361 MGIYYFADPVYRKAAMSIPLVTEGE 385
MGIYYFADPVYRKAAMSIPLVTEGE
Sbjct: 361 MGIYYFADPVYRKAAMSIPLVTEGE 385
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 114 bits (283), Expect = 2e-24
Identities = 103/354 (29%), Positives = 166/354 (46%), Gaps = 25/354 (7%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ FD RP+T E +F REEE KL +LE +LG R VGK+SL A NE
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPG--- 57
Query: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGAGLTVKLKKSA 150
+L+D R E + E L + + +IS + S+ LT++ +K +
Sbjct: 58 ---ILIDCR--ELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLS 112
Query: 151 PAR--RALSDALFKVQDTILILDEVQGIQ----QGVPHFLKALGAVFNENHSLQIIFTGS 204
R L+D ++ + I+ DE Q ++ +G L ++ +L+II TGS
Sbjct: 113 LREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGS 172
Query: 205 YSGVVRRLFEAT-YSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEIRDTI 263
G++ + T Y YGR +++ P+ + + +FL+ GF ++ + E EI + +
Sbjct: 173 EVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAV 232
Query: 264 RNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARKVVRLL 323
L +PGWL ++GV + +A+K + A ELE L RSP+ ++R +
Sbjct: 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEE-LRRRSPRYVDILRAI 291
Query: 324 AFGASWGDLIK-------TGISEDALSRLLGILMDELFILNKDDMGIYYFADPV 370
A G + LI+ T I E L LL L +I+ +D+ Y ADPV
Sbjct: 292 ALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDN--TYKIADPV 343
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 113 bits (279), Expect = 5e-24
Identities = 99/367 (26%), Positives = 167/367 (44%), Gaps = 35/367 (9%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ FD RP+ E +F RE+E++++ A+ +LG R VGK+SL A NE E G
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEM--EGG 58
Query: 91 YNVVLVDLRD----------TETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGA 140
+ +D+R +A E+ + L + L SI +S G
Sbjct: 59 ---IYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKV 115
Query: 141 GLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQ----QGVPHFLKALGAVFNENHS 196
T ++ S+ L + L + + IL DE Q ++ G FL + ++ +
Sbjct: 116 RFTHRVSLSS-----LLERLNEQGEVILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPN 170
Query: 197 LQIIFTGSYSGVVRRLFEAT-YSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYE 255
+ +FTGS G++ + Y YGR + + P+ + FLR GFE+ GV +
Sbjct: 171 VSFVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVK 230
Query: 256 EWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPK 315
E EI++ + LG +PGWL +G + E+A++ ++ A + K ELE L+ RSP+
Sbjct: 231 EEEIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEE-LKKRSPR 289
Query: 316 ARKVVRLLAFGASWGDLIKTGISEDA----LSRLLGIL-----MDELFILNKDDMGIYYF 366
V++ ++ G + IK + + SRL IL M + + +D+ Y
Sbjct: 290 YVLVLKAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKI 349
Query: 367 ADPVYRK 373
DPV +
Sbjct: 350 LDPVVER 356
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 111 bits (275), Expect = 1e-23
Identities = 99/362 (27%), Positives = 171/362 (46%), Gaps = 29/362 (8%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGS-WVAVLGPRMVGKTSLALAGANEFAKEN 89
+ F P+T E+LF RE+E+E+L +A+E+G + +LG R +GK+SL E +
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELS--- 57
Query: 90 GYNVVLVDLRDTET-FREATEKILGRLPRSI----LDSISEYLSSISEVSAKGAGAGLTV 144
Y + VD+R T + F ++GR+ S L+ +L + +S G ++
Sbjct: 58 -YPSIKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSP 116
Query: 145 KLKKSAPARRALSDALFKVQDTILILDEVQGIQ-QGVPHFLKALGAVFNENHSLQIIFTG 203
+ AL+D + I+ DE Q ++ G + L + +L I TG
Sbjct: 117 RDFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTG 176
Query: 204 SYSGVVRRLFEATYSDES----YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEI 259
S G+ LF+ +E +GR I+L + ++ +FL GFE++ E EI
Sbjct: 177 SEVGL---LFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEI 233
Query: 260 RDTIRNLGTLPGWLNLYGVRRYVER-NHEKALKTAIREAVKEAKSELENILEGRSPKARK 318
+ L + GWL LYG R + HE A++ +REA +EL + SP+ +
Sbjct: 234 EKAVEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLF-SYSPRYKG 292
Query: 319 VVRLLAFGAS-WGDL-----IKTG-ISEDALSRLLGILMDELFILNKDDMGIYYFADPVY 371
+++ ++ G S W D+ +K G I++ S LL L+ ++ ++ G Y +DPV
Sbjct: 293 ILKAISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYVEKRN--GRYKISDPVL 350
Query: 372 RK 373
+
Sbjct: 351 ER 352
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 108 bits (268), Expect = 9e-23
Identities = 97/364 (26%), Positives = 164/364 (44%), Gaps = 30/364 (8%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGS-WVAVLGPRMVGKTSLALAGANEFAKEN 89
+ F P+ E+LF RE+E++++ A++ G + +LGPR +GK+S+ +E
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELP--- 60
Query: 90 GYNVVLVDLRDTET-FREATEKILGRLPRSIL-------DSISEYLSSISEVSAKGAGAG 141
Y V VD+R + + I+G++ S L + +L + V G
Sbjct: 61 -YPSVKVDVRKVYSEYSSVNRYIIGKMLLSALRGRKRLFEEARMFLEKVKGVRISGVNIE 119
Query: 142 LTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQ-QGVPHFLKALGAVFNENHSLQII 200
+ K A L++ + I+ DE Q ++ G + + + +L I
Sbjct: 120 INPKGFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFI 179
Query: 201 FTGSYSGVVRRLFEATYSDES---YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEW 257
TGS G++ + + D +GR I + + ++ +FL GF + GV E
Sbjct: 180 LTGSEVGLLYDFLK--FEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERR 237
Query: 258 EIRDTIRNLGTLPGWLNLYGVRRYVER-NHEKALKTAIREAVKEAKSELENILEGRSPKA 316
E+ + L +PGWL LYG R ++ NHE + I+EA EL + SP+
Sbjct: 238 ELEKAVEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLF-SYSPRY 296
Query: 317 RKVVRLLAFGAS-WGDL-----IKTGISEDA-LSRLLGILMDELFILNKDDMGIYYFADP 369
R +++ +A G S W D+ +K G DA S+LL L+ ++ +D G Y DP
Sbjct: 297 RFILKAIALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYVERRD--GRYVITDP 354
Query: 370 VYRK 373
V RK
Sbjct: 355 VLRK 358
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 103 bits (255), Expect = 3e-21
Identities = 84/306 (27%), Positives = 144/306 (46%), Gaps = 18/306 (5%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAG-SWVAVLGPRMVGKTSLALAGANEFAKEN 89
+ F+ +P+T E L+ REEE+ ++ R+++ G V +LG R +GK+SL NE ++
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 90 GYNVVLVDLRDTET------FREATEKILGRLPRSI-LDSISEYLSSISEVSAKGAGAGL 142
V +D R + E IL ++ + I + L I VS G L
Sbjct: 61 ----VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSI--GGVNL 114
Query: 143 TVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQIIFT 202
++ KS L + ++ +DE Q ++ + + ++ ++ I T
Sbjct: 115 ELRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILT 174
Query: 203 GSYSGVVRRLFEATYSDES--YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEIR 260
GS G++ F + ES +GR + I L + + DFLR GFE++G+ EE E+
Sbjct: 175 GSEVGLLED-FLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELE 233
Query: 261 DTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARKVV 320
+ + L + GWL LYG RY+ +H KALK +A + +E + E SP+ +
Sbjct: 234 EVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKE-LSPRYELAM 292
Query: 321 RLLAFG 326
+ +A G
Sbjct: 293 KAVASG 298
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 99.1 bits (243), Expect = 8e-20
Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 35/361 (9%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ FD RP+ E +F RE+E +KL +++E +LG R VGK+SL A + EN
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIEDYPMTLLLGIRRVGKSSLLKA----YLSENP 56
Query: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGAGLTVKLKKSA 150
+L+D R+ R G + R L + +I + L +K K
Sbjct: 57 G--ILIDCRELYGER-------GHITRIDLIRKLQERGNIVQKLLSRFKVSLDLKFLKIE 107
Query: 151 PARRALSDALFKVQDT-------ILILDEVQGIQ----QGVPHFLKALGAVFNENHSLQI 199
P +L D + + +L DE Q ++ +G L ++ +L+I
Sbjct: 108 PKEVSLMDIFESLNEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKI 167
Query: 200 IFTGSYSGVVRRLFEAT-YSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWE 258
+ TGS G++ Y YGR + + P+ ++++FL+ GF ++ + E+
Sbjct: 168 VLTGSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEI 227
Query: 259 IRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARK 318
I I L +PGWL L+GV E+++EKA+K A EL LE RS + +
Sbjct: 228 IEKAIEMLDGIPGWLVLFGVEYMREKDYEKAMKRTFEVAKGLILGELRE-LEKRSRRYLE 286
Query: 319 VVRLLAFGASWGDLIKTGIS-------EDALSRLLGILMDELFILNKDDMGIYYFADPVY 371
++R +A G + LI+ ++ E L LL L +I + G Y +DP+
Sbjct: 287 ILRGIALGYNRWSLIRDYLAVKGIPTPEPRLYELLNNLKKMGWI--NEVEGKYILSDPLV 344
Query: 372 R 372
+
Sbjct: 345 K 345
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 96.3 bits (236), Expect = 5e-19
Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 45/384 (11%)
Query: 32 FFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALA----------- 80
F RP P FGRE+E+E L + G V ++GPR +GKTSL LA
Sbjct: 3 FIYGRPTNNP---FGREKEIESLLGLYKLGQPVGLIGPRRIGKTSLLLASLEHSSFPYSL 59
Query: 81 -GANEFAK-ENGYNV-----VLVDLRDTETFREATEKILGRLPRSILDSISEYLSSIS-- 131
A EF + E G++ + + + +A KI+ +S L + + L +
Sbjct: 60 ISAEEFVRGEKGFDFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDLLGQVKVT 119
Query: 132 -EVSAKGAGAGLTV-KLKKSAPARRALSDAL---------FKVQDTILILDEVQGI---Q 177
+ + LT+ K +K + DAL F +Q ++ +DE Q + +
Sbjct: 120 FNIPELYSTIELTLDKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYLRLAK 179
Query: 178 QGVPHFLKALGAVFNENHSLQIIFTGSYSGVVRRLFEATYSDESYGRPPISIMLTPWRES 237
Q +P + + + + ++ + +GS G++ L + ++ + + + + P+
Sbjct: 180 QSIPGIFHIMRSKWQFHKNVTYVISGSLIGMMMELLSS--RNQPFYQFFYLMKVNPFDRK 237
Query: 238 VAEDFLRTGFEKLGVPYEEWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREA 297
+ +FLR GFE + + EI + + P WLNL G++ E+ ++ I
Sbjct: 238 TSIEFLRKGFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEK---RSANEVINSL 294
Query: 298 VKEAK--SELENILEGRSPKARKVVRLLAFGASWGDLIKTGISEDALSRLLGILMDELFI 355
VK+ + LEN L+ SP AR V++ LA G G+ ++R L LM+ +
Sbjct: 295 VKDINLVTALENDLKRLSPTARAVLKNLASLGGAGSPKDLGLDLLTVTRGLKQLMN-YGL 353
Query: 356 LNKDDMGIYYFADPVYRKAAMSIP 379
+ K+ GIY DP+ K +S P
Sbjct: 354 VEKEGRGIYRIVDPILIKYLVSQP 377
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 96.0 bits (235), Expect = 7e-19
Identities = 88/374 (23%), Positives = 159/374 (41%), Gaps = 33/374 (8%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ F+ RP+ + L+ RE+E+E + ++ G W+AVLG R +GKTS+ E
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGEWIAVLGMRRIGKTSVVNVAVKEIGAIK- 59
Query: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEY------------LSSISEVSAKGA 138
++ L+ + D+ + ++ L I ++I Y + + E+
Sbjct: 60 VSINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKV 119
Query: 139 GAGLTVKLKKSAPA---RRALSDALFKVQDTILILDEVQGIQQ-GVPHFLKALGAVFNEN 194
A LT K++ + R S A + ++ILDE Q + + F V++
Sbjct: 120 RAKLT-KIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFHDVYDNC 178
Query: 195 HSLQIIFTGSYSGVVRR-LFEATYSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVP 253
+ IIFTGS ++ + L Y++ +GR I L + + +FL GFE+ G+
Sbjct: 179 KNTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGIK 238
Query: 254 YEEWEIRDTIRNLGTLPGWLNLYGVRR--YVERNHEKALKTAIREAVKEAKSELENILEG 311
+E I + ++ L +PGWL L+G + + + I +A+ E ++E N +
Sbjct: 239 VDESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPRIDEIIEKAINEVRNEARNFIFS 298
Query: 312 RSPKARKVVRLLAFGASWG------------DLIKTGISEDALSRLLGILMDELFILNKD 359
R +LA G ++ I E + +L L++ FI ++
Sbjct: 299 TQSPLRYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVEFDFIERRE 358
Query: 360 DMGIYYFADPVYRK 373
D Y D RK
Sbjct: 359 DNEYYLHQDEPNRK 372
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 89.7 bits (219), Expect = 5e-17
Identities = 91/365 (24%), Positives = 155/365 (41%), Gaps = 34/365 (9%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ FD +P+ E LF REEE+ +L ++ +LG R GK+S+ NE
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
Query: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGAGLTV---KLK 147
Y +D+R +E+ RL +L +I +I + + +T L
Sbjct: 61 Y----IDVRKAMKGGRVSEE---RLKLQLLGNIRRLRINIPGIKLEPTPLDMTDIFDLLN 113
Query: 148 KSAPARRALSDALFKVQDTILILDEVQGIQ----QGVPHFLKALGAVFNENHSLQIIFTG 203
RR + +L DE Q + +G FL A+ ++ + ++ +F+G
Sbjct: 114 SYGRKRRKI---------IVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSG 164
Query: 204 SYSGVVRRLFEATYSDES-YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEIRDT 262
S G++ S +GR I L P+ ++ +FLR GF ++ + + I
Sbjct: 165 SEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVA 224
Query: 263 IRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARKVVRL 322
+ L +PGWL YG R+H +AL+ ++ A+ +SEL LE RS + +++
Sbjct: 225 VDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSE-LERRSERYVAILKA 283
Query: 323 LAFGASWGDLIKT-------GISEDALSRLLGIL--MDELFILNKDDMGIYYFADPVYRK 373
++ G + IK I+ S LL L M + KD +Y DPV +
Sbjct: 284 ISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVER 343
Query: 374 AAMSI 378
S+
Sbjct: 344 VIRSL 348
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 87.8 bits (214), Expect = 2e-16
Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 41/325 (12%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ FD P+ + F RE+E+EKL + L A + VLG R GK+S+ G NE
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKL-KGLRAPITL-VLGLRRTGKSSIIKIGINEL----N 54
Query: 91 YNVVLVDLRDTET------------FREATEKILGRLPRSILDSISEYLSSISEVSAKGA 138
+ +DLR E ++ K++ RLP S+ + L +I + G
Sbjct: 55 LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLP-----SLLKALKNIQGIVIMGN 109
Query: 139 GAGLTVKLKKSAPARRALSDALFKVQ-----DTILILDEVQGIQQ--GVPHFLKALGAVF 191
+K + R + ++ L + + I++LDE Q + + GV + L AL +
Sbjct: 110 ----EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV-NLLPALAYAY 164
Query: 192 NENHSLQIIFTGSYSGVVRRLFEATYSDES-YGRPPISIMLTPWRESVAEDFLRTGFEKL 250
+ ++ I +GS G++ + +GR ++ L P+ A +FLR GF++
Sbjct: 165 DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA 224
Query: 251 GVPYEEWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILE 310
+ ++++E+ +G +PGWL +G +N + A+ + A K E EN L
Sbjct: 225 DIDFKDYEV--VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLH 282
Query: 311 GRSPKARK---VVRLLAFGASWGDL 332
GR ++ ++R L+ W D+
Sbjct: 283 GREIARKRYLNIMRTLSKCGKWSDV 307
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 87.8 bits (214), Expect = 2e-16
Identities = 94/345 (27%), Positives = 158/345 (45%), Gaps = 37/345 (10%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVL-GPRMVGKTSLALAGANEFAKEN 89
L+FD+RP++ E L+ REEE+E+L +E + VL G R +GKTSL NE +
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 90 GYNVVLVDLRDTET---------FREATEKILGRLPRSILDSISEYLSSISEVSAKGAGA 140
V+VDLR F+ A L R + I + + L +S +S G
Sbjct: 84 ----VIVDLRGVNPNSRRDLYLRFQSALNDYLLR-NKPIAKKVKDALKMVSGISVSGFSV 138
Query: 141 GLTVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQII 200
++ K + +L AL + ++ ++ LDEVQ + V L +L A F + + +
Sbjct: 139 SISWK---NLETLYSLISALER-ENFVIALDEVQEARGLVGKELASLIAHFYDYGEVTFV 194
Query: 201 FTGSYSGVVRRLFEATYSDES----YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEE 256
TGS G+ L++ D YGR I L + + +FLR GF ++ +
Sbjct: 195 LTGSEVGL---LYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVND 251
Query: 257 WEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKA 316
++ + L + GWL +GV + L+ ++EA SEL+ L+ R
Sbjct: 252 EILKLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIAR 311
Query: 317 RK---VVRLLAFG-ASWGDL-------IKTGISEDALSRLLGILM 350
++ V++ +A G A+W ++ K IS+ L+ +L L+
Sbjct: 312 KRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLL 356
>gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 196
Score = 84.3 bits (205), Expect = 2e-15
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 9/203 (4%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
+ FD P+ E+L GRE+EVE + + +W+ + G R +GKTSL NE K
Sbjct: 1 MIFDLHPKETIEELVGREKEVEHCISQILSKNWIIIGGQREIGKTSLMKVVINEIKKREQ 60
Query: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKG--AGAGLTVKLKK 148
+ ++LR + ++ + + E +S +V+ AG+ ++
Sbjct: 61 IAGIYINLRGVRSLNSLLTILVSEINK-------EKISWRFKVNINFLITSAGIEIRGGS 113
Query: 149 SAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQIIFTGSYSGV 208
+L + L + ++ DEVQ + FL LG V+ N + +IF+GSY G+
Sbjct: 114 KRRVVNSLIELLNSSDEIVIAFDEVQELSFASKQFLDILGNVYATNPKVHMIFSGSYVGL 173
Query: 209 VRRLFEATYSDESYGRPPISIML 231
V+ L +GRPP I L
Sbjct: 174 VKALLSPPSDSPLHGRPPTEIRL 196
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 83.9 bits (204), Expect = 3e-15
Identities = 91/367 (24%), Positives = 172/367 (46%), Gaps = 26/367 (7%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAG-SWVAVLGPRMVGKTSLALAGANEFAKEN 89
+ FD RP+T + L+ RE E+++ AL+ G + + +LG R +GK+SL G KE+
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGL----KES 56
Query: 90 GYNVVLVDLRDTE-TFREATEKILGR-LPRSILDSISEYLSSISEV--SAKG---AGAGL 142
+ VD+R + + +L R + S+L S ++ ++ S KG +G +
Sbjct: 57 NFPYSKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHV 116
Query: 143 TVKLKKSAPARRALSD--ALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQII 200
+ ++ P+ D A + + ++ DE Q ++ + + + ++ I
Sbjct: 117 EFERRQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFI 176
Query: 201 FTGSYSGVVRRLFEATYSDES-YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEI 259
TGS G++ + +GR I+L + + DFLR GFE+L + EI
Sbjct: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
Query: 260 RDTIRNLGTLPGWLNLYGVRRYVER-NHEKALKTAIREAVKEAKSELENILEGRSPKARK 318
+ + + + GWL LYG R V++ E++L + +A + EL +IL S + +
Sbjct: 237 EEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHIL-AYSKRYKF 295
Query: 319 VVRLLAFG-ASWGDL-----IKTGISEDA-LSRLLGILMDELFILNKDDMGIYYFADPVY 371
+++ +A G W ++ +TG DA S LL L+ ++ +D G Y DP+
Sbjct: 296 ILKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYLEKRD--GEYIIPDPLV 353
Query: 372 RKAAMSI 378
++ ++
Sbjct: 354 KEIVANL 360
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 82.7 bits (201), Expect = 6e-15
Identities = 81/315 (25%), Positives = 147/315 (45%), Gaps = 32/315 (10%)
Query: 32 FFDQRPRTLPEQLFGREEE--VEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKEN 89
FF RP T E L+G V++L RA G+ +LGPR VGKTS+ A +F ++
Sbjct: 6 FFSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKR 65
Query: 90 GYNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKG---AGAGLTVKL 146
G++ + + + +G SI D + S ++K + GL+V++
Sbjct: 66 GHHYIYFNF----------SRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEI 115
Query: 147 KK------SAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENH-SLQI 199
+K ++ + L + +LI DE Q + + + L +++ ++ I
Sbjct: 116 RKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISI 175
Query: 200 IFTGSYSGVVRRLFEATYSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPY-EEWE 258
IFTGS G++ R + S ++ R L W +FL++GF + +E E
Sbjct: 176 IFTGSMPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELE 235
Query: 259 IRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKS----ELENILEG--- 311
+ ++ LG +PG+++ YG+ + A+K A+ +A++E++S E + LE
Sbjct: 236 LERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFIN 295
Query: 312 --RSPKARKVVRLLA 324
SP +V+R+LA
Sbjct: 296 VYSSPIYVEVLRVLA 310
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 80.8 bits (196), Expect = 2e-14
Identities = 87/366 (23%), Positives = 163/366 (43%), Gaps = 31/366 (8%)
Query: 32 FFDQRPRTLPEQLFGREEE-VEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
FF RP + L+ + + V+ LFR + G+ +LGPR VGKTS+ + +FAK
Sbjct: 6 FFTTRPIMEEDCLWDKRRKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNVISQKFAKRRN 65
Query: 91 YNVVLVDLRDTETFREATEKIL--GRLPRSILDSISEYLSSISEVSAKGAGAGLTVKLKK 148
++ + + R + + R ++ + Y+ S+ +S + +
Sbjct: 66 HHYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSIEEFTSD 125
Query: 149 SAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENH-SLQIIFTGSYSG 207
+ R LS + +LI DE Q + + + L +++ ++ +IFTGS G
Sbjct: 126 FSTLVRILSQ---NSERGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISMIFTGSMPG 182
Query: 208 VVRRLFEATYSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPY-EEWEIRDTIRNL 266
++ ++ R + L+ W +FL+ GFE G+ E E+ ++ L
Sbjct: 183 LLIEYLNPGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERAVKEL 242
Query: 267 GTLPGWLNLYGVRRY--------VERNHEKALKTAIREAVKEAKSELENILE-GRSPKAR 317
G +PG+++ YG+ VE+ +AL+ + R A++E K +LE L SP
Sbjct: 243 GGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNSPIYV 302
Query: 318 KVVRLLAFGASWGDLIKTGISEDALSR----------LLGILMDELFILNKDDMGIYYFA 367
+V+++LA +S+ +K ++R L +L FI + + G Y+
Sbjct: 303 EVMKVLA--SSYPTALKGAEVYRRMNRAPKRIQHIYKYLDVLEKVGFI--RSEGGKYWIE 358
Query: 368 DPVYRK 373
DP+ R+
Sbjct: 359 DPILRE 364
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 80.4 bits (195), Expect = 3e-14
Identities = 90/364 (24%), Positives = 161/364 (43%), Gaps = 29/364 (7%)
Query: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
L F P+T E LF RE E++ L + LE V + G R VGK+SL N K +
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETYPIVVITGLRRVGKSSLVKVFLN---KSDL 62
Query: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGAGLTVK--LKK 148
++ + R ET L R + + +S S ++ G+TV +
Sbjct: 63 LHITVDGRRLYET--SGGNISSHHLTRFLGEELSRISKSQKLLNVLKRVRGITVSGTSIE 120
Query: 149 SAPARRALSDALFKVQDT--------ILILDEVQGIQ----QGVPHFLKALGAVFNENHS 196
P +LSD L K+ +T ++ DE Q ++ +G L ++ +
Sbjct: 121 LNPKEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFEN 180
Query: 197 LQIIFTGSYSGVVRRLFE-ATYSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYE 255
++ I +GS GV+ + YS +GR + + P+ + DFL GF ++G
Sbjct: 181 VRFIISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKI- 239
Query: 256 EWEIRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPK 315
+++ + +R + + G+L L+GV+ ++ ++ALK + E+E L RS +
Sbjct: 240 NFDVEEIVREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKEMEE-LRKRSER 298
Query: 316 ARKVVRLLAFGASWGDLIKT--GISEDAL--SRLLGIL--MDELFILNKDDMGIYYFADP 369
++R +A G + +K D + SRL +L ++++ + K G Y DP
Sbjct: 299 YPFILRQIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSG-YRIVDP 357
Query: 370 VYRK 373
V+ +
Sbjct: 358 VFER 361
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137644831
Number of Sequences: 2977
Number of extensions: 5708515
Number of successful extensions: 17744
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17712
Number of HSP's gapped (non-prelim): 17
length of query: 385
length of database: 189,106,746
effective HSP length: 58
effective length of query: 327
effective length of database: 154,394,500
effective search space: 50487001500
effective search space used: 50487001500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)