BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2158 (PAB2158) DE:Hypothetical protein
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75220 hypothetical protein PAB2158 - Pyrococcus abyssi (st...   238  1e-62
pir||D75134 hypothetical protein PAB1780 - Pyrococcus abyssi (st...    85  2e-16
pir||E71096 hypothetical protein PH1033 - Pyrococcus horikoshii ...    76  2e-13

>pir||G75220 hypothetical protein PAB2158 - Pyrococcus abyssi (strain Orsay)
           >gi|5457723|emb|CAB49214.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  238 bits (602), Expect = 1e-62
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MCSDNYSYWSPYAGDPQKIRVPKTTVKEGFKNEVLALHHNRDNWKVVKKKNIWESRIEPK 60
           MCSDNYSYWSPYAGDPQKIRVPKTTVKEGFKNEVLALHHNRDNWKVVKKKNIWESRIEPK
Sbjct: 1   MCSDNYSYWSPYAGDPQKIRVPKTTVKEGFKNEVLALHHNRDNWKVVKKKNIWESRIEPK 60

Query: 61  IVGIFEVVSEPYTDSSRNFKSPPHLNETSPLRIKIRPLKLGELDFKPSFQN 111
           IVGIFEVVSEPYTDSSRNFKSPPHLNETSPLRIKIRPLKLGELDFKPSFQN
Sbjct: 61  IVGIFEVVSEPYTDSSRNFKSPPHLNETSPLRIKIRPLKLGELDFKPSFQN 111


>pir||D75134 hypothetical protein PAB1780 - Pyrococcus abyssi (strain Orsay)
           >gi|5458300|emb|CAB49789.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 142
           
 Score = 85.0 bits (207), Expect = 2e-16
 Identities = 48/97 (49%), Positives = 59/97 (60%), Gaps = 30/97 (30%)

Query: 40  NRDNWKVVKKKNIW-------------------------ESR----IEPKIVGIFEVVSE 70
           NRDNWKVVK+KN+W                         ESR    +EP IVGIFEVVSE
Sbjct: 9   NRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIVGIFEVVSE 68

Query: 71  PYTDSSRNFKSPPHLNETSPLRIKIRPLKLGELDFKP 107
           PY+DS++ FKS     ET P+R+KIRP+K+GE+ FKP
Sbjct: 69  PYSDSTKIFKSHTP-GETYPIRVKIRPIKIGEVKFKP 104


>pir||E71096 hypothetical protein PH1033 - Pyrococcus horikoshii
           >gi|3257448|dbj|BAA30131.1| (AP000004) 145aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 145
           
 Score = 75.7 bits (183), Expect = 2e-13
 Identities = 39/98 (39%), Positives = 53/98 (53%), Gaps = 30/98 (30%)

Query: 40  NRDNWKVVKKKNIW------------------------------ESRIEPKIVGIFEVVS 69
           NR+NW+V+K+ N+W                               + +EPKIVGI+EV S
Sbjct: 9   NRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTS 68

Query: 70  EPYTDSSRNFKSPPHLNETSPLRIKIRPLKLGELDFKP 107
           EPY D SR FK      ET P R+KI+P+K+GE++FKP
Sbjct: 69  EPYVDFSRIFKPHRGGKETYPYRVKIKPIKIGEINFKP 106


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.135    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47640465
Number of Sequences: 2977
Number of extensions: 1862207
Number of successful extensions: 2441
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2436
Number of HSP's gapped (non-prelim): 4
length of query: 111
length of database: 189,106,746
effective HSP length: 50
effective length of query: 61
effective length of database: 159,182,396
effective search space: 9710126156
effective search space used: 9710126156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 160 (66.7 bits)