BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2159 (PAB2159) DE:Hypothetical protein
(206 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V1Y5|YL59_PYRAB HYPOTHETICAL PROTEIN PAB2159 >gi|7518329|pi... 404 e-112
sp|O59533|YI87_PYRHO HYPOTHETICAL PROTEIN PH1887 >gi|7519329|pir... 334 5e-91
sp|O58796|YA69_PYRHO HYPOTHETICAL PROTEIN PH1069 162 2e-39
pir||B71101 hypothetical protein PH1069 - Pyrococcus horikoshii ... 162 2e-39
sp|Q9V074|Y615_PYRAB HYPOTHETICAL PROTEIN PAB0615 >gi|7517894|pi... 161 8e-39
sp|Q58905|YF10_METJA HYPOTHETICAL PROTEIN MJ1510 >gi|2128906|pir... 137 9e-32
gi|11499641 conserved hypothetical protein [Archaeoglobus fulgid... 115 5e-25
gb|AAD48952.1|AF149414_1 (AF149414) contains similarity to Pfam ... 80 3e-14
sp|Q9YDV3|Y816_AERPE HYPOTHETICAL PROTEIN APE0816 >gi|7516040|pi... 71 7e-12
gb|AAK40933.1| Conserved hypothetical protein [Sulfolobus solfat... 69 4e-11
sp|Q9UX16|Y828_SULSO HYPOTHETICAL PROTEIN C08_028 >gi|6015851|em... 69 4e-11
>sp|Q9V1Y5|YL59_PYRAB HYPOTHETICAL PROTEIN PAB2159 >gi|7518329|pir||F75220 hypothetical
protein PAB2159 - Pyrococcus abyssi (strain Orsay)
>gi|5457722|emb|CAB49213.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 206
Score = 404 bits (1028), Expect = e-112
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MKAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPL 60
MKAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPL
Sbjct: 1 MKAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPL 60
Query: 61 SRWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFK 120
SRWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFK
Sbjct: 61 SRWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFK 120
Query: 121 YTTFKVISNRYLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY 180
YTTFKVISNRYLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY
Sbjct: 121 YTTFKVISNRYLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY 180
Query: 181 KNFQELKEKVGEDELFIALKREILGT 206
KNFQELKEKVGEDELFIALKREILGT
Sbjct: 181 KNFQELKEKVGEDELFIALKREILGT 206
>sp|O59533|YI87_PYRHO HYPOTHETICAL PROTEIN PH1887 >gi|7519329|pir||B71202 hypothetical
protein PH1887 - Pyrococcus horikoshii
>gi|3258326|dbj|BAA31009.1| (AP000007) 206aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 206
Score = 334 bits (847), Expect = 5e-91
Identities = 162/204 (79%), Positives = 187/204 (91%)
Query: 1 MKAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPL 60
MKAKREALISLF AIKE KVD DIIDLL+LINSIKG+YTTSSCSGRIGI+EEPSLGAKPL
Sbjct: 1 MKAKREALISLFHAIKEEKVDSDIIDLLLLINSIKGIYTTSSCSGRIGILEEPSLGAKPL 60
Query: 61 SRWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFK 120
SRWLIKVHRPM FEEA DALK+A +G+IFLKSQPPI HVVAE +E AKL+H+IGL+SGFK
Sbjct: 61 SRWLIKVHRPMSFEEARDALKRAREGLIFLKSQPPIFHVVAETIENAKLVHEIGLASGFK 120
Query: 121 YTTFKVISNRYLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY 180
YTTFK IS+R+LVEINGTEYLTVPLG+DG+++ S+EYLKFA+ IGN+ML RGKS+LPRL
Sbjct: 121 YTTFKAISSRFLVEINGTEYLTVPLGKDGRIIASDEYLKFAISIGNKMLERGKSKLPRLR 180
Query: 181 KNFQELKEKVGEDELFIALKREIL 204
NF+++K+K+GED LFI LKREIL
Sbjct: 181 DNFEKIKKKLGEDPLFIQLKREIL 204
>sp|O58796|YA69_PYRHO HYPOTHETICAL PROTEIN PH1069
Length = 196
Score = 162 bits (407), Expect = 2e-39
Identities = 89/186 (47%), Positives = 121/186 (64%), Gaps = 1/186 (0%)
Query: 2 KAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLS 61
+AK+EAL+SL A+++G+VDEDII LL INSI+ +TTSSCSGRI ++E P G K +
Sbjct: 9 RAKKEALMSLEIALRKGEVDEDIIPLLKKINSIENYFTTSSCSGRISVMEMPHFGDKVNA 68
Query: 62 RWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKY 121
+WL K HR + E ++A+KK G ++ + PILHV A+ LE A L + +S GFKY
Sbjct: 69 KWLGKWHREVSLYEVLEAIKKHRSGQLWFLVRSPILHVGAKTLEDAVKLVNLAVSCGFKY 128
Query: 122 TTFKVISNRYL-VEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY 180
+ K ISN+ L VEI TE + V LG +G++ V EEYL VEI N+ +RR K +L RL
Sbjct: 129 SNIKSISNKKLIVEIRSTERMDVLLGENGEIFVGEEYLNKIVEIANDQMRRFKEKLKRLE 188
Query: 181 KNFQEL 186
L
Sbjct: 189 SKINAL 194
>pir||B71101 hypothetical protein PH1069 - Pyrococcus horikoshii
>gi|3257485|dbj|BAA30168.1| (AP000004) 200aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 200
Score = 162 bits (407), Expect = 2e-39
Identities = 89/186 (47%), Positives = 121/186 (64%), Gaps = 1/186 (0%)
Query: 2 KAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLS 61
+AK+EAL+SL A+++G+VDEDII LL INSI+ +TTSSCSGRI ++E P G K +
Sbjct: 13 RAKKEALMSLEIALRKGEVDEDIIPLLKKINSIENYFTTSSCSGRISVMEMPHFGDKVNA 72
Query: 62 RWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKY 121
+WL K HR + E ++A+KK G ++ + PILHV A+ LE A L + +S GFKY
Sbjct: 73 KWLGKWHREVSLYEVLEAIKKHRSGQLWFLVRSPILHVGAKTLEDAVKLVNLAVSCGFKY 132
Query: 122 TTFKVISNRYL-VEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY 180
+ K ISN+ L VEI TE + V LG +G++ V EEYL VEI N+ +RR K +L RL
Sbjct: 133 SNIKSISNKKLIVEIRSTERMDVLLGENGEIFVGEEYLNKIVEIANDQMRRFKEKLKRLE 192
Query: 181 KNFQEL 186
L
Sbjct: 193 SKINAL 198
>sp|Q9V074|Y615_PYRAB HYPOTHETICAL PROTEIN PAB0615 >gi|7517894|pir||F75139 hypothetical
protein PAB0615 - Pyrococcus abyssi (strain Orsay)
>gi|5458342|emb|CAB49831.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 194
Score = 161 bits (402), Expect = 8e-39
Identities = 88/186 (47%), Positives = 122/186 (65%), Gaps = 1/186 (0%)
Query: 2 KAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLS 61
+AK+EALISL A++ G+VDEDII LL IN +TTSSCSGRI I+E P G K +
Sbjct: 9 RAKKEALISLEIALRRGEVDEDIIPLLKKINEKPNYFTTSSCSGRISIMEMPDFGDKVNA 68
Query: 62 RWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKY 121
+WL K HR + +E ++A++K +G ++L + PILHV A LE L +G+S GFKY
Sbjct: 69 KWLGKWHREVSLDEVLEAIRKHREGQLWLLVRSPILHVGARTLEDGIKLLNLGVSCGFKY 128
Query: 122 TTFKVISNRYL-VEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLY 180
+ K IS+R L VEI TE L LG +G++LVS++Y++ VEI N +RR K +L R
Sbjct: 129 SNIKSISDRKLIVEIRSTERLDALLGENGEILVSDDYMRKLVEIANAQVRRFKRKLKRFE 188
Query: 181 KNFQEL 186
+ +EL
Sbjct: 189 ERIEEL 194
>sp|Q58905|YF10_METJA HYPOTHETICAL PROTEIN MJ1510 >gi|2128906|pir||E64488 hypothetical
protein MJ1510 - Methanococcus jannaschii
>gi|1500399|gb|AAB99529.1| (U67592) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 193
Score = 137 bits (342), Expect = 9e-32
Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 2/190 (1%)
Query: 1 MKAKREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEP-SLGAKP 59
++ K+ L++L AI+EG VDE+II +L IN I YTTSSC GR+GI+E P K
Sbjct: 4 LEDKKRTLMNLELAIREGLVDEEIIPILNKINEIDNYYTTSSCIGRVGIMEIPKDKNPKL 63
Query: 60 LSRWLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGF 119
SRWL K H ++E +ALK +G I PILH+ +++E AK + ++ + SG
Sbjct: 64 YSRWLGKWHHYASYDELFNALKNKKEGYIVFVMNSPILHIACKDIESAKKMLELAIHSGL 123
Query: 120 KYTTFKVISN-RYLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPR 178
K ++ K IS+ R +VEI T + P+G DG++ V YLKF ++ N L+R + L R
Sbjct: 124 KASSIKSISDKRVIVEILTTYKVDTPIGEDGEIFVDNNYLKFLLDYSNSKLKRAREILMR 183
Query: 179 LYKNFQELKE 188
ELK+
Sbjct: 184 WANRLDELKK 193
>gi|11499641 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|11387246|sp|O28220|YK59_ARCFU HYPOTHETICAL PROTEIN
AF2059 >gi|7483202|pir||B69507 conserved hypothetical
protein AF2059 - Archaeoglobus fulgidus
>gi|2648472|gb|AAB89192.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 196
Score = 115 bits (284), Expect = 5e-25
Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 2/186 (1%)
Query: 4 KREALISLFTAIKEGKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLSRW 63
K+E L A + KVD DI++LL LINS T SSCSGRI +++ G K S +
Sbjct: 7 KKEKLRGYLEAKNQRKVDFDIVELLDLINSFDDFVTLSSCSGRIAVVDLEKPGDKASSLF 66
Query: 64 LIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKYTT 123
L K H +E E +A ++ K + +L PPI+HV N+ AKLL ++GF+ +
Sbjct: 67 LGKWHEGVEVSEVAEAALRSRK-VAWLIQYPPIIHVACRNIGAAKLLMNAANTAGFRRSG 125
Query: 124 FKVISNRYLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLYKNF 183
+SN Y+VEI E + +P+ G +LV + YL + V NE L +GK +L RL +
Sbjct: 126 VISLSN-YVVEIASLERIELPVAEKGLMLVDDAYLSYVVRWANEKLLKGKEKLGRLQEAL 184
Query: 184 QELKEK 189
+ L+ +
Sbjct: 185 ESLQRE 190
>gb|AAD48952.1|AF149414_1 (AF149414) contains similarity to Pfam family PF00145 (C-5
cytosine-specific DNA methylase); score=10.4. E=0.051,
N=1 [Arabidopsis thaliana] >gi|7267225|emb|CAB80832.1|
(AL161501) contains similarity to Pfam family PF00145
(C-5 cytosine-specific DNA methylase), score=10.4.
E=0.051, N=1, coded for by A. thaliana cDNA
T41604~strong similarity to~Contains Prokaryotic
membrane lipoprotein lipid attachment site AA40-50~con>
Length = 977
Score = 79.6 bits (193), Expect = 3e-14
Identities = 58/196 (29%), Positives = 98/196 (49%), Gaps = 22/196 (11%)
Query: 2 KAKREALISLFTAIKE----GKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGA 57
K K L S+ +++ + G +DE II LL IN +TTSSCSGRI I+ +P +
Sbjct: 5 KRKAATLASIRSSVTDKSPKGFLDEPIIPLLETINHHPSYFTTSSCSGRISILSQPKPKS 64
Query: 58 KPLSR-------WLIKVHRPMEFEEAIDAL--KKANK-------GIIFLKSQPPILHVVA 101
++ WL H P + + I L K+N+ + + +P I+ V
Sbjct: 65 NDSTKKKARGGSWLYITHDPADSDLVISLLFPSKSNQIDPIDQPSELVFRFEPLIIAVEC 124
Query: 102 ENLEMAKLLHQIGLSSGFKYTTFKVISN--RYLVEINGTEYLTVPLGRDGKVLVSEEYLK 159
++L A+ L + +S+GF+ + + R ++ I + + VP+G K++VS EY+K
Sbjct: 125 KDLGSAQFLVALAISAGFRESGITSCGDGKRVIIAIRCSIRMEVPIGDTEKLMVSPEYVK 184
Query: 160 FAVEIGNEMLRRGKSR 175
F V+I NE + + R
Sbjct: 185 FLVDIANEKMDANRKR 200
>sp|Q9YDV3|Y816_AERPE HYPOTHETICAL PROTEIN APE0816 >gi|7516040|pir||B72674 hypothetical
protein APE0816 - Aeropyrum pernix (strain K1)
>gi|5104479|dbj|BAA79794.1| (AP000060) 188aa long
hypothetical protein [Aeropyrum pernix]
Length = 188
Score = 71.4 bits (172), Expect = 7e-12
Identities = 50/173 (28%), Positives = 87/173 (49%), Gaps = 3/173 (1%)
Query: 18 GKVDEDIIDLLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLSRWLIKVHRPMEFEEAI 77
G +D +L IN + +TSSC+GRI +IE + + +R K H P+ E
Sbjct: 15 GYLDPGAEKVLARINRPSKIVSTSSCTGRITLIEGEAHWLRNGARVAYKTHHPISRSEVE 74
Query: 78 DALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKYTTFKVIS--NRYLVEI 135
L++ ++LK PILH+ E + AK L + +GFK++ I+ +R ++EI
Sbjct: 75 RVLRRGFTN-LWLKVTGPILHLRVEGWQCAKSLLEAARRNGFKHSGVISIAEDSRLVIEI 133
Query: 136 NGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRLPRLYKNFQELKE 188
++ ++VPL +G +V ++ L +E N +L + L + +EL E
Sbjct: 134 MSSQSMSVPLVMEGARIVGDDALDMLIEKANTILVESRIGLDTFSREVEELVE 186
>gb|AAK40933.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 209
Score = 69.1 bits (166), Expect = 4e-11
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 4 KREALISLFTAIKEGKVDEDIID-LLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLSR 62
+ +AL ++ + G +D DI+ LL + VYT SSCSGRI I++ + S
Sbjct: 8 REKALNKIYHDKEIGYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEMPWDRKNST 67
Query: 63 WLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKYT 122
+ K H + ++ D L K ++L Q PI+H+ A+N+E + +I +GFK++
Sbjct: 68 IIFKNHLRITEQDLEDVLSKNQVRRLWLIVQGPIIHIYAKNIETGWDILKIAREAGFKHS 127
Query: 123 TFKVISNR-YLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRL 176
+ + LVE+ + L V ++ +K V + NE+L RGK ++
Sbjct: 128 GILATNQKGVLVELRTGIRMVHLLRESNTERVDKDKIKTLVNVCNEVLARGKQKM 182
>sp|Q9UX16|Y828_SULSO HYPOTHETICAL PROTEIN C08_028 >gi|6015851|emb|CAB57678.1| (Y18930)
hypothetical protein [Sulfolobus solfataricus]
Length = 209
Score = 69.1 bits (166), Expect = 4e-11
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 4 KREALISLFTAIKEGKVDEDIID-LLMLINSIKGVYTTSSCSGRIGIIEEPSLGAKPLSR 62
+ +AL ++ + G +D DI+ LL + VYT SSCSGRI I++ + S
Sbjct: 8 REKALNKIYHDKEIGYLDPDILGFLLAFYRNRNDVYTQSSCSGRITIVDAEMPWDRKNST 67
Query: 63 WLIKVHRPMEFEEAIDALKKANKGIIFLKSQPPILHVVAENLEMAKLLHQIGLSSGFKYT 122
+ K H + ++ D L K ++L Q PI+H+ A+N+E + +I +GFK++
Sbjct: 68 IIFKNHLRITEQDLEDVLSKNQVRRLWLIVQGPIIHIYAKNIETGWDILKIAREAGFKHS 127
Query: 123 TFKVISNR-YLVEINGTEYLTVPLGRDGKVLVSEEYLKFAVEIGNEMLRRGKSRL 176
+ + LVE+ + L V ++ +K V + NE+L RGK ++
Sbjct: 128 GILATNQKGVLVELRTGIRMVHLLRESNTERVDKDKIKTLVNVCNEVLARGKQKM 182
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72994965
Number of Sequences: 2977
Number of extensions: 2946266
Number of successful extensions: 12694
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12677
Number of HSP's gapped (non-prelim): 11
length of query: 206
length of database: 189,106,746
effective HSP length: 57
effective length of query: 149
effective length of database: 154,992,987
effective search space: 23093955063
effective search space used: 23093955063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)