BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2161 (PAB2161) DE:Hypothetical protein
(533 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75220 hypothetical protein PAB2161 - Pyrococcus abyssi (st... 1069 0.0
pir||D71202 hypothetical protein PH1889 - Pyrococcus horikoshii ... 1022 0.0
pir||B72487 hypothetical protein APE2538 - Aeropyrum pernix (str... 611 e-174
gb|AAG20264.1| (AE005101) Vng2124c [Halobacterium sp. NRC-1] 457 e-127
gb|AAG20158.1| (AE005093) Vng1985c [Halobacterium sp. NRC-1] 406 e-112
pir||H81355 probable integral membrane protein Cj0832c [imported... 349 5e-95
dbj|BAB07168.1| (AP001518) unknown conserved protein [Bacillus h... 310 2e-83
pir||F82237 conserved hypothetical protein VC1131 [imported] - V... 292 6e-78
sp|P44263|YF86_HAEIN HYPOTHETICAL PROTEIN HI1586 >gi|1074850|pir... 289 5e-77
pir||C81190 conserved hypothetical protein NMB0531 [imported] - ... 279 8e-74
pir||A81914 probable integral membrane protein NMA0709 [imported... 278 1e-73
pir||C82487 conserved hypothetical protein VCA0213 [imported] - ... 265 1e-69
pir||A71875 hypothetical protein jhp0880 - Helicobacter pylori (... 210 3e-53
pir||B64638 conserved hypothetical integral membrane protein HP0... 205 1e-51
gb|AAG18982.1| (AE004998) Na+/H+ antiporter; NhaC1 [Halobacteriu... 76 9e-13
pir||B82490 probable Na+/H+ antiporter VCA0193 [imported] - Vibr... 76 1e-12
>pir||D75220 hypothetical protein PAB2161 - Pyrococcus abyssi (strain Orsay)
>gi|5457720|emb|CAB49211.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 533
Score = 1069 bits (2735), Expect = 0.0
Identities = 533/533 (100%), Positives = 533/533 (100%)
Query: 1 MGDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNV 60
MGDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNV
Sbjct: 1 MGDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNV 60
Query: 61 TDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD 120
TDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD
Sbjct: 61 TDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD 120
Query: 121 YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL 180
YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL
Sbjct: 121 YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL 180
Query: 181 NITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGAKP 240
NITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGAKP
Sbjct: 181 NITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGAKP 240
Query: 241 LMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILGNADSA 300
LMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILGNADSA
Sbjct: 241 LMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILGNADSA 300
Query: 301 TSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKSATEAV 360
TSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKSATEAV
Sbjct: 301 TSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKSATEAV 360
Query: 361 GTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPND 420
GTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPND
Sbjct: 361 GTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPND 420
Query: 421 PHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL 480
PHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL
Sbjct: 421 PHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL 480
Query: 481 YLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGKKYGVPHGRVPIYPTEISE 533
YLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGKKYGVPHGRVPIYPTEISE
Sbjct: 481 YLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGKKYGVPHGRVPIYPTEISE 533
>pir||D71202 hypothetical protein PH1889 - Pyrococcus horikoshii
>gi|3258328|dbj|BAA31011.1| (AP000007) 533aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 533
Score = 1022 bits (2613), Expect = 0.0
Identities = 505/533 (94%), Positives = 517/533 (96%)
Query: 1 MGDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNV 60
M DFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAA WNP+TGTIKTFEW+I NV
Sbjct: 1 MSDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAANWNPITGTIKTFEWIIQNV 60
Query: 61 TDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD 120
T+SWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD
Sbjct: 61 TNSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD 120
Query: 121 YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL 180
YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL
Sbjct: 121 YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL 180
Query: 181 NITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGAKP 240
+ITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRD AKP
Sbjct: 181 HITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDDAKP 240
Query: 241 LMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILGNADSA 300
LMATESDLGLP TEKGSVHFFIWPVLSLI VTLLGLYYTGK+ACEG CG M IL NADSA
Sbjct: 241 LMATESDLGLPLTEKGSVHFFIWPVLSLIIVTLLGLYYTGKAACEGPCGAMDILSNADSA 300
Query: 301 TSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKSATEAV 360
TSLLWGSFAMV VALTLVLATKTMTVEE ESAIIQGMKQMMMATVILVLAWSIKSATEAV
Sbjct: 301 TSLLWGSFAMVAVALTLVLATKTMTVEETESAIIQGMKQMMMATVILVLAWSIKSATEAV 360
Query: 361 GTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPND 420
GTA+YVVGLAQ ANVP GIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPND
Sbjct: 361 GTAEYVVGLAQRANVPGGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPND 420
Query: 421 PHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL 480
P +L+ASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL
Sbjct: 421 PQVLFASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL 480
Query: 481 YLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGKKYGVPHGRVPIYPTEISE 533
Y+LFA GI+SPV+LLP+GLVLLIAAWYFLSEWYGKKYGVPHGRVPIYPTEISE
Sbjct: 481 YILFALGIKSPVILLPVGLVLLIAAWYFLSEWYGKKYGVPHGRVPIYPTEISE 533
>pir||B72487 hypothetical protein APE2538 - Aeropyrum pernix (strain K1)
>gi|5106243|dbj|BAA81554.1| (AP000064) 559aa long
hypothetical protein [Aeropyrum pernix]
Length = 559
Score = 611 bits (1558), Expect = e-174
Identities = 312/538 (57%), Positives = 397/538 (72%), Gaps = 20/538 (3%)
Query: 9 LLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNVTDSWNATI 68
LLPPL+AI LAI T++V+ ALF GVW GG+M G+NP++ T ++ EW++ N TDSWNATI
Sbjct: 14 LLPPLLAIALAIVTRQVLPALFLGVWAGGLMLTGYNPISATAQSLEWIVENATDSWNATI 73
Query: 69 LVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDDYTNTIIVG 128
L+FDF+IGA VGL++ SG +H+ A+AI R++++ A+L W++GV++FFDDY NTI+VG
Sbjct: 74 LIFDFIIGAFVGLLFASGALHSAASAIAGRVRSALGATLASWIMGVIVFFDDYANTIVVG 133
Query: 129 NTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKLN------- 181
+TMRPI D++RVSREML+YI DSTAAPVAG+ +VSTWIG+E+GLIKEA L
Sbjct: 134 STMRPIADRLRVSREMLSYIVDSTAAPVAGMMLVSTWIGFEVGLIKEAIATLEEEALAGL 193
Query: 182 ----ITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDG 237
T+ Y AWL SVPYRFYSIFA++LV +V T RH+G MLKAE RA TGKV+RDG
Sbjct: 194 IPAAPTIEAYAAWLQSVPYRFYSIFALLLVLLVVLTRRHFGPMLKAEHRAVATGKVLRDG 253
Query: 238 AKPLMATESDLGLPKTEK--GSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILG 295
A+PLM TE+ LG K F + LI VTLLG++ TG E + L
Sbjct: 254 AQPLMPTETVLGEKPAAKTHAPAWLFAVSIAVLIGVTLLGMWVTGGGDRWWETSFIDALM 313
Query: 296 NADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKS 355
NADSAT+LLWGSFA +VAL LAT++++ A ++GM M+ A IL+LAWSIKS
Sbjct: 314 NADSATALLWGSFAAYLVALAGALATRSLSFSTAMEYTVKGMYLMVYANAILLLAWSIKS 373
Query: 356 ATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYK 415
A +AVGTA+YVV LA +A V ++P IIFL+AMFISFTTGTSWGTFGI+MPIA+P+A+K
Sbjct: 374 AADAVGTAEYVVHLATAAGVSPLLVPPIIFLSAMFISFTTGTSWGTFGIMMPIAVPMAWK 433
Query: 416 LAPNDPH------ILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPY 469
LA ++YASI AVFAGGI+GDH SPISDTTIMSSMF+G+DHIDHV TQIPY
Sbjct: 434 LAIQTGDVDLAYTVMYASIAAVFAGGIYGDHSSPISDTTIMSSMFTGADHIDHVNTQIPY 493
Query: 470 AVTAASVGIVLYLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGKKYGVPHGRVPIY 527
A+ AA G VLY+LFA G+ SP++LLP+GLV+L YF+SEWYG+ G+P +VP Y
Sbjct: 494 ALWAAITGGVLYVLFAIGVTSPLILLPVGLVVLTVGHYFISEWYGRLVGLP-SKVPNY 550
>gb|AAG20264.1| (AE005101) Vng2124c [Halobacterium sp. NRC-1]
Length = 582
Score = 457 bits (1164), Expect = e-127
Identities = 235/525 (44%), Positives = 324/525 (60%), Gaps = 8/525 (1%)
Query: 1 MGDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNV 60
M +G+L+L+PPL+AIVLA+ T++V+ +LF+GVW G ++ A WNP+ T T +W++ V
Sbjct: 1 MASYGVLALVPPLLAIVLAMTTRQVLVSLFAGVWAGALVVAQWNPIAATALTMDWLVAVV 60
Query: 61 TDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDD 120
+N +V +GAG IY+SGG+ A+ I RI T+R++ +L WL+GV IFFD
Sbjct: 61 RTPFNTKFIVLILFMGAGAAFIYRSGGILALERWIGSRISTARESQILTWLIGVFIFFDS 120
Query: 121 YTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKL 180
YT+T++ GN R + SREM AY+ DST APV VS WIGY++ +I E
Sbjct: 121 YTSTVVTGNATRELAQDADSSREMHAYVLDSTTAPVTTFGPVSNWIGYQVSMIIAGLEAA 180
Query: 181 NITMGE-----YYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVR 235
++ E + +L S+P+ Y A +V + T R +G ML AE RARTTG +
Sbjct: 181 RVSAAELGTTPFGLFLQSIPWNIYCFMAFFMVGFITITQRFFGPMLDAEWRARTTGDTIA 240
Query: 236 DGAKPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILG 295
DGA PL +D+G P T S+ F P+ L+ V L ++Y G G + L
Sbjct: 241 DGATPLSDVSNDVGDPSTANPSLLNFFGPIAVLLAVGLGSMWYLGGGYKPG-VDIATALQ 299
Query: 296 NADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKS 355
D A LL G+FA ++ LA TM +E A I+ G K M +A I+VLAW I
Sbjct: 300 ETDVAMGLLHGAFAFMVSGFVGALAYGTMDLEGATDTIVDGFKTMNIALAIIVLAWGIGM 359
Query: 356 ATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYK 415
A E VGTAD++V + VPAG +PL++FL AMF++FTTGTSWGT IL P+AIPL Y
Sbjct: 360 AAEKVGTADFIVTTLVGSGVPAGFLPLLVFLAAMFVAFTTGTSWGTMAILTPVAIPLGYN 419
Query: 416 LAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAAS 475
LA +L +G +F G I+GDH SPISDTT+MSS+F+GSDHIDHVTTQIP+A TAA
Sbjct: 420 LA--GAAVLPVLVGVLFGGAIWGDHSSPISDTTVMSSIFAGSDHIDHVTTQIPFAATAAG 477
Query: 476 VGIVLYLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGKKYGVP 520
V IV+ +L+A G+RSPVV LP+ VL + A L++ ++ G+P
Sbjct: 478 VTIVMLVLYAVGLRSPVVALPLATVLTLGAVVVLNKLDTRRKGLP 522
>gb|AAG20158.1| (AE005093) Vng1985c [Halobacterium sp. NRC-1]
Length = 536
Score = 406 bits (1031), Expect = e-112
Identities = 217/523 (41%), Positives = 328/523 (62%), Gaps = 21/523 (4%)
Query: 1 MGDFGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNV 60
M +FG+LS++PPL+AI LAI T++ + +LF GVW GG++ G G +TF WV+ ++
Sbjct: 1 MSEFGVLSVVPPLLAIALAIITRKAILSLFLGVWSGGIIYTGG---LGIQQTFSWVVRSI 57
Query: 61 TDS--------WNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLL 112
+ ++A I+VF L+G+ V +I++ GG HAV + I + R A ++ WLL
Sbjct: 58 SQVEPNAEGSVFHAQIIVFTLLLGSSVAMIWRLGGSHAVRDWALTHIDSKRSAGVVAWLL 117
Query: 113 GVLIFFDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGL 172
GVL+FFDDY NT IVG+TM+ ++D + +SRE L+Y+ DSTAAPVA + I S+W+ ++L +
Sbjct: 118 GVLLFFDDYANTAIVGSTMKDVSDHLGLSREKLSYVVDSTAAPVATLGI-SSWVAFQLSM 176
Query: 173 IKEAFEKLNITMG----EYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRAR 228
I++ +E ++ + +L ++P+ YSI A+++V I+ + R YGAML AE RA
Sbjct: 177 IEKGYETAGVSAASRPQNFEIFLQAIPFNMYSILAVVMVAIIVLSRRDYGAMLTAEHRAT 236
Query: 229 TTGKVVRDGAKPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGEC 288
TTG V + A P+ + +LG P E S+ F PV LI VT+ YTG +
Sbjct: 237 TTGAVTSEDATPMQDVKGELGEPSAENPSLVSFFVPVAVLIAVTIATALYTGYGP---DT 293
Query: 289 GVMKILGNADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILV 348
+ ++ AD A +L+ GSFAMVI L L +++ E+ + G M+ A ILV
Sbjct: 294 TLYDMVVGADYAVALIVGSFAMVISTYVLGLTYGILSLGESVDTTVDGFGIMLTAVTILV 353
Query: 349 LAWSIKSATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPI 408
LAWSI + +A+GTA YV G+A+ PA ++P+++ TA F++F+TG+SWGT I+ PI
Sbjct: 354 LAWSIGNVVDALGTARYVSGIAKLFLTPA-LLPVVVMFTAAFVAFSTGSSWGTMSIVTPI 412
Query: 409 AIPLAYKLAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIP 468
A+P+A+ LA ++ A +G VF+G IFGDH SPISDTT++S+ F+G+D IDHV TQ+
Sbjct: 413 AVPVAWNLAGTHT-MVSAVVGVVFSGAIFGDHASPISDTTVLSATFTGADLIDHVRTQLY 471
Query: 469 YAVTAASVGIVLYLLFAAGIRSPVVLLPIGLVLLIAAWYFLSE 511
YA T +V VL ++ +P LLP+G + L+ Y LSE
Sbjct: 472 YAGTVIAVTAVLLAVWGVTRITPWALLPVGALALVVLVYALSE 514
>pir||H81355 probable integral membrane protein Cj0832c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968278|emb|CAB73097.1| (AL139076) putative integral
membrane protein [Campylobacter jejuni]
Length = 577
Score = 349 bits (886), Expect = 5e-95
Identities = 210/541 (38%), Positives = 307/541 (55%), Gaps = 45/541 (8%)
Query: 4 FGILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAA------------GWNPVTGTIK 51
FG +L+PPLVAI LA TK V+ +LF+GV G + + N T++
Sbjct: 28 FGAFTLIPPLVAIALAFITKDVILSLFTGVLSGTFLLSLSTNIFKAQHLTFVNYYNTTVE 87
Query: 52 TFE----WVINNVTDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASL 107
+F +++ + +D NA I++ IG V LI K GG AVA KR K++ A +
Sbjct: 88 SFSKIISYILGSTSDPVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQV 147
Query: 108 LGWLLGVLIFFDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIG 167
W LG+LIFFDDY N +IVG MRP+ DK ++SRE A+I DSTAAPVAGIA++STWIG
Sbjct: 148 NTWFLGLLIFFDDYANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIG 207
Query: 168 YELGLIKEAFEKLNIT-MGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMR 226
E+ LIK A+E + I+ + + ++ ++PYRFY+IF + V + A R +G+M KAE+R
Sbjct: 208 LEVSLIKTAYEHIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVR 267
Query: 227 ARTTGKVV---RDGAKPLMATESDLGLPKTEKGSVHFF--IWPVLSLIFVTLLGLYYTGK 281
ARTTG++ + G E PK E + F I P+ +LI + +LG Y+ G
Sbjct: 268 ARTTGQIAPLPKSGTLDTTELEDQFLAPK-EGIKIRAFDAIVPIFTLIILAILGFYFNGL 326
Query: 282 SACEGE------------CGVMKILGNADSATSLLWGSFAMVIVALTLVLATKTMTVEEA 329
S EGE GNADS+ L + IVA+ + + K ++EA
Sbjct: 327 STLEGEELAKASTNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEA 386
Query: 330 ESAIIQGMKQMMMATVILVLAWSIKSATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAM 389
I G K M+ V+L+ AWS+ S + +GT+ ++ L + +P I+P IF A
Sbjct: 387 VETWIYGWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLL-ADKLPEFILPATIFAFAS 445
Query: 390 FISFTTGTSWGTFGILMPIAIPLAYKLAPND-------PHILYASIGAVFAGGIFGDHCS 442
ISF GTS+GT GILMP+A+PLA+++A + H + +I V G IFG+HCS
Sbjct: 446 AISFAIGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCS 505
Query: 443 PISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVL-YLLFAAGIRSPVVLLPIGLVL 501
PISD I+SSM + DH++HV TQIPYA+ + ++ Y+ + G+ S +LP+ +L
Sbjct: 506 PISDNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGL-SVWFVLPLNFIL 564
Query: 502 L 502
+
Sbjct: 565 I 565
>dbj|BAB07168.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 516
Score = 310 bits (786), Expect = 2e-83
Identities = 193/510 (37%), Positives = 289/510 (55%), Gaps = 28/510 (5%)
Query: 6 ILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWN---------PVTGTIKTFEWV 56
I SL+PPL+A+V+ I T+RV+ +L G+ +G +M + + G I E
Sbjct: 5 IWSLIPPLLALVMVILTRRVLLSLGIGIIVGAIMLNDFAILESIKHVAELVGAIFVTEGA 64
Query: 57 INNVTDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLI 116
IN+ W I+ F L+G L+ +SGG A + +++KT A LL + LG+++
Sbjct: 65 IND----WELFIIFFLLLLGMMAALMTRSGGTRAFGDWAVRKVKTRVGAQLLAFWLGIIV 120
Query: 117 FFDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEA 176
F DDY N++ VGN RP+TD+ RVSR LAYI DST+AP+ I+ +S+W Y + +I
Sbjct: 121 FIDDYFNSLTVGNVSRPLTDRHRVSRAKLAYIVDSTSAPICVISPISSWGAYIITIIAGI 180
Query: 177 FEKLNITM-GEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVR 235
+T G A++ VP Y+I AI LVF VA+ + GAM E +A TG+++
Sbjct: 181 LATHGVTQYGGLQAFIMMVPMNLYAIVAIGLVFAVAWYNLDVGAMKIHETKAVETGELL- 239
Query: 236 DGAKPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILG 295
D AK E D + ++G V I P+++L+ T+ + TG EG ++ I
Sbjct: 240 DAAKGPAPGEQD-QVKVVKQGRVSDLILPIVALVIGTVTFMITTGIQGTEGTVTILSIFE 298
Query: 296 NADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKS 355
N D A +L++G IVAL L L ++ G+K M+ A IL+ AW++
Sbjct: 299 NTDVARALVYGGLIGFIVALVLNL---VKGANGLGGSLWAGIKSMLPAIYILIFAWTLIG 355
Query: 356 ATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYK 415
+ +GT Y+ L +P ++P I+FL A +F+TGTSWGTFGIL+PIA +A
Sbjct: 356 IIDGLGTGGYLASLV-DGRIPPMLLPAILFLIAGVTAFSTGTSWGTFGILLPIAGEMA-- 412
Query: 416 LAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAAS 475
A D ++ + AV AG IFGDHCSPISDTTI+SS +GS HIDHV TQ+PYA+ +A
Sbjct: 413 -AVIDVTMILPMLAAVLAGAIFGDHCSPISDTTILSSTGAGSHHIDHVITQLPYAILSAV 471
Query: 476 VGIVLYLLFAAGIRSPVVL---LPIGLVLL 502
+ + +L A G+ + V++ + IGL++L
Sbjct: 472 ISFIAFL--ALGMTNSVLIGLAVAIGLLVL 499
>pir||F82237 conserved hypothetical protein VC1131 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655603|gb|AAF94290.1|
(AE004193) conserved hypothetical protein [Vibrio
cholerae]
Length = 533
Score = 292 bits (740), Expect = 6e-78
Identities = 190/521 (36%), Positives = 282/521 (53%), Gaps = 36/521 (6%)
Query: 7 LSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWN---------PVTGTIKTFEWVI 57
LS+LPPLVA+ LAI T+RV+ +L G+++G ++ A ++ G++ E I
Sbjct: 11 LSVLPPLVALSLAIVTRRVLLSLGVGIFLGALLLADYSIGQSLQYIATQVGSVFVKEGAI 70
Query: 58 NNVTDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIF 117
N +WN +I+ F L+G L+ SGG A A R+K+ R + LL LGV IF
Sbjct: 71 N----AWNMSIVGFLLLLGMMTALLTLSGGTRAFAQWAQVRVKSKRGSKLLAAFLGVFIF 126
Query: 118 FDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAF 177
DDY N++ VG+ RP+TD+ VSR LAYI DSTAAP+ + S+W Y + +I
Sbjct: 127 VDDYFNSLAVGSISRPVTDRFYVSRAKLAYILDSTAAPMCVVMPASSWGAYIMTIIGGIL 186
Query: 178 EKLNITMGEYY---AWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVV 234
I EY A+L VP FY+IFA+++VF V + G M K E+ A
Sbjct: 187 VSHGIE--EYSALGAYLRLVPMNFYAIFALLMVFAVVWFQMDIGQMRKHEIAASQGRGFD 244
Query: 235 RDGAKPLMAT---ESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVM 291
D + +L + ++E+G+V + P++ L+ T+ + +TG SA
Sbjct: 245 EDPSTDTQEAHELNEELDIRESERGTVLDLVLPIVFLVVATIGAMIWTGASALAESGQSF 304
Query: 292 KILG---NADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILV 348
I G N + TSL++G + +A VL K T E A++ I G K M A +IL+
Sbjct: 305 DIFGAFENTNVGTSLVYGGLVGLAMAFVTVLRQKLPTAEIAKTLWI-GAKSMFGAILILI 363
Query: 349 LAWSIKSATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPI 408
AW+I S + T Y+ L Q N+ +P+I+F+ + ++F+TGTSWGTFGI++PI
Sbjct: 364 FAWTIGSVIGDMKTGAYLSSLVQ-GNIDPHWLPVILFVLSGAMAFSTGTSWGTFGIMLPI 422
Query: 409 AIPLAYKLAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIP 468
A +A D ++ +GAV AG +FGDHCSPISDTTI+SS + HIDHV TQ+P
Sbjct: 423 AGDMA---GATDIALMLPMLGAVLAGSVFGDHCSPISDTTILSSTGARCHHIDHVATQLP 479
Query: 469 YAVTAASVGIVLYLLFAAGIRSPVVLLPIGLVLLIAAWYFL 509
YA+ A V + Y++ + +GL L A+ F+
Sbjct: 480 YALAVALVSAIGYVVLG-------IFASLGLALAAASVSFV 513
>sp|P44263|YF86_HAEIN HYPOTHETICAL PROTEIN HI1586 >gi|1074850|pir||C64037 hypothetical
protein HI1586 - Haemophilus influenzae (strain Rd KW20)
>gi|1574427|gb|AAC23234.1| (U32832) conserved
hypothetical integral membrane protein [Haemophilus
influenzae Rd]
Length = 519
Score = 289 bits (732), Expect = 5e-77
Identities = 184/492 (37%), Positives = 267/492 (53%), Gaps = 37/492 (7%)
Query: 6 ILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNVTD--- 62
+ S++P L+AI+LAI T+RV+ +L +G+ IG +M + W + F +++ NV
Sbjct: 23 VWSIVPALLAIILAIATRRVLVSLSAGIIIGSLMLSDWQIGSA----FNYLVKNVVSLVY 78
Query: 63 -----SWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIF 117
+ N I++F L+G L+ SG A A RIK R A LL L + F
Sbjct: 79 ADGEINSNMNIVLFLLLLGVLTALLTVSGSNRAFAEWAQSRIKGRRGAKLLAASLVFVTF 138
Query: 118 FDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAF 177
DDY +++ VG RP+TD+ +VSR LAYI DSTAAP+ + VS+W Y + LI
Sbjct: 139 IDDYFHSLAVGAIARPVTDRFKVSRAKLAYILDSTAAPMCVMMPVSSWGAYIITLIGGLL 198
Query: 178 EKLNITMGEYY---AWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVV 234
+IT EY A++ FY+IF+II+VF VAY +M++ E A
Sbjct: 199 ATYSIT--EYTPIGAFVAMSSMNFYAIFSIIMVFFVAYFSFDIASMVRHEKLA------- 249
Query: 235 RDGAKPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKIL 294
L TE L KG V I P+L LI T+ + YTG A + V +L
Sbjct: 250 ------LKNTEDQLEEETGTKGQVRNLILPILVLIIATVSMMIYTGAEALAADGKVFSVL 303
Query: 295 G---NADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAW 351
G N TSL+ G F +I++ L++ + ++V E + I G+K M A IL AW
Sbjct: 304 GTFENTVVGTSLVVGGFCSIIISTLLIILDRQVSVPEYVRSWIVGIKSMSGAIAILFFAW 363
Query: 352 SIKSATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIP 411
+I + T Y+ L S N+P +P+I+F+ ++F+TGTSWGTFGI++PIA
Sbjct: 364 TINKIVGDMQTGKYLSSLV-SGNIPMQFLPVILFVLGAAMAFSTGTSWGTFGIMLPIAAA 422
Query: 412 LAYKLAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAV 471
+A A P +L + AV AG + GDHCSP+SDTTI+SS + +HIDHVTTQ+PYA
Sbjct: 423 MAANAA---PELLLPCLSAVMAGAVCGDHCSPVSDTTILSSTGAKCNHIDHVTTQLPYAA 479
Query: 472 TAASVGIVLYLL 483
T A+ + Y++
Sbjct: 480 TVATATSIGYIV 491
>pir||C81190 conserved hypothetical protein NMB0531 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225756|gb|AAF40961.1| (AE002408) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 506
Score = 279 bits (705), Expect = 8e-74
Identities = 180/496 (36%), Positives = 263/496 (52%), Gaps = 34/496 (6%)
Query: 8 SLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNVTDS--WN 65
S++PP +A+ LA+ T+RV+ +L G+ +G G NPV G + V+ W+
Sbjct: 12 SVVPPFLALALAVITRRVLLSLGIGILVGVAFLVGGNPVDGLTHLKDMVVGLAWSDGDWS 71
Query: 66 A---TILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDDYT 122
ILVF L+G L+ SG A A+ + IK R A +L L + F DDY
Sbjct: 72 LGKPKILVFLILLGIFTSLLTYSGSNQAFADWAKRHIKNRRGAKMLTACLVFVTFIDDYF 131
Query: 123 NTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKLNI 182
+++ VG RP+TDK +VSR LAYI DSTAAP+ + VS+W + + I
Sbjct: 132 HSLAVGAIARPVTDKFKVSRTKLAYILDSTAAPMCVLMPVSSWGASIIATLAGLLVTYKI 191
Query: 183 T----MGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGA 238
T MG + A +Y++FA+I+VF+VA+ G+M + E A
Sbjct: 192 TEYTPMGTFVA---MSLMNYYALFALIMVFVVAWFSFDIGSMARFEQAA----------- 237
Query: 239 KPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILGNAD 298
L + + KG V+ I PVL+LI T+ + YTG A E ++ N D
Sbjct: 238 --LNEAHDETAVSDATKGRVYALIIPVLALIASTVSAMIYTGAQASE-TFSILGAFENTD 294
Query: 299 SATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKSATE 358
TSL++G V+ + L T+ + A+ QG K M A IL+LAW I +
Sbjct: 295 VNTSLVFGGTCGVLAVVLCTLG--TIKTADYPKAVWQGAKSMFGAIAILILAWLISTVVG 352
Query: 359 AVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAP 418
+ T DY+ L + N+ G +P+I+FL A ++F TGTSWGTFGI++PIA +A K+
Sbjct: 353 EMHTGDYLSTLV-AGNIHPGFLPVILFLLASVMAFATGTSWGTFGIMLPIAAAMAVKV-- 409
Query: 419 NDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGI 478
+P ++ + AV AG + GDHCSPISDTTI+SS + +HIDHVT+Q+PYA+T A+
Sbjct: 410 -EPALIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHIDHVTSQLPYALTVAAAAA 468
Query: 479 VLYLLFAAGIRSPVVL 494
YL A G+ +L
Sbjct: 469 SGYL--ALGLTKSALL 482
>pir||A81914 probable integral membrane protein NMA0709 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7379433|emb|CAB83995.1| (AL162754) putative integral
membrane protein [Neisseria meningitidis Z2491]
Length = 506
Score = 278 bits (704), Expect = 1e-73
Identities = 180/496 (36%), Positives = 263/496 (52%), Gaps = 34/496 (6%)
Query: 8 SLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNVTDS--WN 65
S++PP +A+ LA+ T+RV+ +L G+ +G G NPV G + V+ W+
Sbjct: 12 SVVPPFLALALAVITRRVLLSLGIGILVGVAFLVGGNPVDGLTHLKDMVVGLAWSDGDWS 71
Query: 66 A---TILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFDDYT 122
ILVF L+G L+ SG A A+ + IK R A +L L + F DDY
Sbjct: 72 LGKPKILVFLILLGIFTSLLTYSGSNQAFADWAKRHIKNRRGAKMLTACLVFVTFIDDYF 131
Query: 123 NTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEKLNI 182
+++ VG RP+TDK +VSR LAYI DSTAAP+ + VS+W + + I
Sbjct: 132 HSLAVGAIARPVTDKFKVSRAKLAYILDSTAAPMCVLMPVSSWGASIIATLAGLLVTYKI 191
Query: 183 T----MGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGA 238
T MG + A +Y++FA+I+VF+VA+ G+M + E A
Sbjct: 192 TEYTPMGTFVA---MSLMNYYALFALIMVFVVAWFSFDIGSMARFEQAA----------- 237
Query: 239 KPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKILGNAD 298
L + + G V+ I PVL+LI T+ + YTG A E ++ N D
Sbjct: 238 --LNEAHDETAVSDGSWGRVYALIIPVLALIASTVSAMIYTGAQASE-TFSILGAFENTD 294
Query: 299 SATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKSATE 358
TSL++G V+ + L T+ + + A+ QG K M A IL+LAW I +
Sbjct: 295 VNTSLVFGGTCGVLAVVLCTLG--TIKIADYPKAVWQGAKSMFGAIAILILAWLISTVVG 352
Query: 359 AVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAP 418
+ T DY+ L + N+ G +P+I+FL A ++F TGTSWGTFGI++PIA +A K+
Sbjct: 353 EMHTGDYLSTLV-AGNIHPGFLPVILFLLASVMAFATGTSWGTFGIMLPIAAAMAVKV-- 409
Query: 419 NDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGI 478
DP ++ + AV AG + GDHCSPISDTTI+SS + +HIDHVT+Q+PYA+T A+
Sbjct: 410 -DPSLIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHIDHVTSQLPYALTVAAAAA 468
Query: 479 VLYLLFAAGIRSPVVL 494
YL A G+ +L
Sbjct: 469 SGYL--ALGLTKSALL 482
>pir||C82487 conserved hypothetical protein VCA0213 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657606|gb|AAF96125.1|
(AE004361) conserved hypothetical protein [Vibrio
cholerae]
Length = 529
Score = 265 bits (670), Expect = 1e-69
Identities = 163/487 (33%), Positives = 271/487 (55%), Gaps = 19/487 (3%)
Query: 6 ILSLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVT------GTIKTFEWVINN 59
+ S++PPL+A++LAI T+RV+ +L +G+ G VM ++P++ G I W
Sbjct: 13 VYSVIPPLLAVLLAITTRRVLLSLGAGIVAGAVMLNHFSPLSTVQYLFGKISGLFWA-EG 71
Query: 60 VTDSWNATILVFDFLIGAGVGLIYKSGGVHAVANAITKRIKTSRDASLLGWLLGVLIFFD 119
+S N +L+F L+G + L+ SG A A ++ K R A L L+ F D
Sbjct: 72 AANSDNINMLLFMLLLGGLISLMTASGATRAFAVWAERKCKDRRSAKALTGLMVFAFFID 131
Query: 120 DYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLIKEAFEK 179
D+ +++ VG RP+TD+ ++SR LAY+ DSTAAPV I +S+W Y + LI
Sbjct: 132 DFFHSLSVGAICRPVTDRFQISRAKLAYLLDSTAAPVCVITPISSWGAYIIALIGGILAA 191
Query: 180 LNIT-MGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKVVRDGA 238
+T + A++ +P Y++F +++V V + G M + E AR GK+ +
Sbjct: 192 HEMTEISAISAFVQMIPMNLYAVFTLLMVLAVIFLPMDIGPMRQHEAWAR-EGKLWDESK 250
Query: 239 KPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKS--ACEGEC-GVMKILG 295
+ + G +T +G++ + P+ L TL+ + TG + A GE ++ L
Sbjct: 251 GRPAGLDMEGG--ETARGTMIDMVLPIAVLTITTLIFMIQTGNAVLAANGEAFSLIGALE 308
Query: 296 NADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSIKS 355
N + A SL++ + + V++ L L K ++ + S +G+ MM A +IL+ AW+I
Sbjct: 309 NTNVAQSLVYAALCSLAVSIVLSLRLK-LSAQTWLSTAPKGVMAMMPAIIILLFAWTIGG 367
Query: 356 ATEAVGTADYVVGLAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYK 415
+ T Y+ L Q N+P ++P ++F+ + ++F TGTSWGTFGI++P+A +A
Sbjct: 368 VVRDLQTGIYLASLTQ-GNLPVELLPALVFVLSCLMAFATGTSWGTFGIMLPLAGDIA-- 424
Query: 416 LAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAAS 475
A +D ++ ++ AV AG +FGDH SPIS T+I+S+ +GS HIDHV TQ+PYA++AA
Sbjct: 425 -AASDISLMLPTLSAVLAGAVFGDHASPISSTSILSATGAGSHHIDHVVTQLPYAISAAM 483
Query: 476 VGIVLYL 482
++ YL
Sbjct: 484 GALLGYL 490
>pir||A71875 hypothetical protein jhp0880 - Helicobacter pylori (strain J99)
>gi|4155461|gb|AAD06464.1| (AE001518) putative
[Helicobacter pylori J99]
Length = 493
Score = 210 bits (530), Expect = 3e-53
Identities = 161/525 (30%), Positives = 257/525 (48%), Gaps = 56/525 (10%)
Query: 8 SLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNVTDSWN-- 65
SL+ PL I++ ++TKRV +LF+G+ + V+ + + E++ + +T +
Sbjct: 7 SLIVPLSVILMVVFTKRVALSLFTGILVSAVLTHSLH----LSQLVEYIYHKITSVFYTY 62
Query: 66 ----------ATILVFDFLIGAGV--GLIYKSGGVHAVANAITKRIKTSRDASLLGWLLG 113
+ + VF FLI G+ +I KSG V K K ++ + + G
Sbjct: 63 EPEKGLNFNLSNLYVFGFLIFLGILSQVILKSGSVQNFVKKAKKYSKNAKTPEFIAFFSG 122
Query: 114 VLIFFDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLI 173
++IF DDY N + VG + + D +RE LAYI DST+APV + +S+W Y +G++
Sbjct: 123 IIIFVDDYFNALTVGQISKSLNDAHNSTRERLAYIIDSTSAPVCLLVPISSWGAYIMGIM 182
Query: 174 KEAFEKLNITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKV 233
+ + + L S+ +Y+IFA+I VF+ + +M K +
Sbjct: 183 NN--DNSPLLKDSFSVLLQSLSSNYYAIFALIAVFLTILWQINLPSMRKYQNIG------ 234
Query: 234 VRDGAKPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKI 293
V+D S L S+ I + SLIF YTG I
Sbjct: 235 VKDFYSEQEEDSSKLAPLSLLPLSILLLIVSISSLIF-------YTG-----------VI 276
Query: 294 LGNADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSI 353
L N D++ SL +G +IV T +LA + II+G K + A ++L LAW+I
Sbjct: 277 LKNTDASFSLFYGGLFSLIV--TYLLAYPFLEKGSFLKLIIEGFKSVGPAILVLTLAWAI 334
Query: 354 KSA-TEAVGTADYVVGLAQS-ANVPAGI-IPLIIFLTAMFISFTTGTSWGTFGILMPIAI 410
+ T Y+ +++ N G+ +PLI FL + FI+F+TGTSWG F I++PI
Sbjct: 335 GPVIRDDAQTGLYLAQVSKGFLNSGGGVYMPLIFFLISGFIAFSTGTSWGAFAIMLPIGA 394
Query: 411 PLAYKLAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYA 470
+A N+ I+ I A+ +G ++GDH SPISDTTI+S+ +G H TQ+PYA
Sbjct: 395 GMA-----NESDIILI-ISAILSGAVYGDHTSPISDTTILSATGAGCSVQSHFITQLPYA 448
Query: 471 VTAASVGIVLYLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGK 515
T A + + L A+ + S + L IG+ LL+ +Y L +YG+
Sbjct: 449 -TIAMLCSAVSLGVASFMHSRPLALLIGVALLVGVFYLLKRFYGE 492
>pir||B64638 conserved hypothetical integral membrane protein HP0946 -
Helicobacter pylori (strain 26695)
>gi|2314087|gb|AAD07993.1| (AE000604) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 496
Score = 205 bits (516), Expect = 1e-51
Identities = 153/525 (29%), Positives = 258/525 (49%), Gaps = 56/525 (10%)
Query: 8 SLLPPLVAIVLAIWTKRVVFALFSGVWIGGVMAAGWNPVTGTIKTFEWVINNVTDSWN-- 65
SL+ P+ I++ ++TKRV +LF G+ + V+ + + E++ + +T +
Sbjct: 7 SLIVPISVILMVVFTKRVALSLFVGILVSAVLMHSLH----LSQLVEYIYHKITSVFYTY 62
Query: 66 ----------ATILVFDFLIGAGV--GLIYKSGGVHAVANAITKRIKTSRDASLLGWLLG 113
+ + VF FLI GV +I KSG V K K ++ + + G
Sbjct: 63 EPEKGLNFNLSNLYVFGFLIFLGVLSQVILKSGSVQNFVKKAKKYSKNAKTPEFIAFFSG 122
Query: 114 VLIFFDDYTNTIIVGNTMRPITDKMRVSREMLAYIDDSTAAPVAGIAIVSTWIGYELGLI 173
++IF DDY N + VG + + D +RE LAYI DST+APV + +S+W Y +G++
Sbjct: 123 IIIFVDDYFNALTVGQISKSLNDAHNSTRERLAYIIDSTSAPVCLLVPISSWGAYIMGIM 182
Query: 174 KEAFEKLNITMGEYYAWLHSVPYRFYSIFAIILVFIVAYTHRHYGAMLKAEMRARTTGKV 233
+ + + + S+ +Y+IFA+I VF+ + +M K +
Sbjct: 183 NN--DSSPLLKDSFSVLVQSLSSNYYAIFALIAVFLTILWQINLPSMRKYQ--------- 231
Query: 234 VRDGAKPLMATESDLGLPKTEKGSVHFFIWPVLSLIFVTLLGLYYTGKSACEGECGVMKI 293
G K + + + ++ + +L LI L+YTG I
Sbjct: 232 -NIGVKDFYSEQEE---SSSKLAPLSLLPLSILLLIVSISSLLFYTG-----------VI 276
Query: 294 LGNADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVILVLAWSI 353
L N D++ SL +G +IV T +LA K + ++ G K + A ++L LAW+I
Sbjct: 277 LKNTDASFSLFYGGLFSLIV--TYLLAYKFLEKGSFFKLMLDGFKSVGPAILVLTLAWAI 334
Query: 354 KSA-TEAVGTADYVVGLAQS-ANVPAGI-IPLIIFLTAMFISFTTGTSWGTFGILMPIAI 410
+ T Y+ +++ N G+ +PLI FL + FI+F+TGTSWG F I++PI
Sbjct: 335 GPVIRDDAQTGLYLANISKGFLNNGGGVYMPLIFFLISGFIAFSTGTSWGAFAIMLPIGA 394
Query: 411 PLAYKLAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYA 470
+A + +D + + A+ +G ++GDH SPISDTTI+S+ +G H TQ+PYA
Sbjct: 395 GMA---SESD---IILIVSAILSGAVYGDHTSPISDTTILSATGAGCSVQSHFITQLPYA 448
Query: 471 VTAASVGIVLYLLFAAGIRSPVVLLPIGLVLLIAAWYFLSEWYGK 515
T A + + L A+ + S + L IG+ LL+ +Y L ++YG+
Sbjct: 449 -TIAMLCSAVSLGVASFMYSRSLALLIGVALLVGVFYLLKKFYGE 492
>gb|AAG18982.1| (AE004998) Na+/H+ antiporter; NhaC1 [Halobacterium sp. NRC-1]
Length = 521
Score = 76.1 bits (184), Expect = 9e-13
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 16/199 (8%)
Query: 287 ECGVMKILGNADSATSLLWGSFAMVIVALTLVLATKTMTVEEAESAIIQGMKQMMMATVI 346
+ GV+++ T L+ G +I + LV + + I GM Q + AT I
Sbjct: 46 QSGVLRV----SDTTGLVAGMLVALIFGMFLVKGSWAGYA----NTIFAGMTQRVAATAI 97
Query: 347 LVLAWSIKSATEAVGTADYVVGL---AQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFG 403
+ W+ A E + T +V GL A++A + + P F+ A ++ G+ +GT
Sbjct: 98 VAWLWAGMFA-ETIQTGQFVSGLVWAAEAAGIGGAVFPAATFILAGLLATGIGSGYGTTV 156
Query: 404 ILMPIAIPLAYKLAPNDPHILYASIGAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHV 463
+ P L N P +L+ GA+ +G +FGD+ +P+SDTTI+S++ +D V
Sbjct: 157 AFTALFFPAGVALGAN-PALLF---GAILSGAVFGDNLAPVSDTTIVSAVTQDADIGGVV 212
Query: 464 TTQIPYAVTAASVGIVLYL 482
++ YA AA + YL
Sbjct: 213 ASRFKYAGVAAVLSFAAYL 231
>pir||B82490 probable Na+/H+ antiporter VCA0193 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657585|gb|AAF96106.1|
(AE004359) Na+/H+ antiporter, putative [Vibrio cholerae]
Length = 447
Score = 75.7 bits (183), Expect = 1e-12
Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 311 VIVALTLVLATKTMTVEEAESAIIQGM--KQMMMATVILVLAWSIKSATEAVGTADYVVG 368
V+ A+ L +A ++ A ++G+ +M +I +LA + + +A G D V
Sbjct: 52 VLPAVVLAIALSKESLNRAIEQFLRGVGHSDIMAMCIIYLLAGAFAAVAKATGGVDATVN 111
Query: 369 LAQSANVPAGIIPLIIFLTAMFISFTTGTSWGTFGILMPIAIPLAYKLAPNDPHILYASI 428
L A +PA +I +F+ + F++ GTS GT + P+A+ +A N L +
Sbjct: 112 LGL-ALLPASLILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLN----LGLTA 166
Query: 429 GAVFAGGIFGDHCSPISDTTIMSSMFSGSDHIDHVTTQIPYAVTAASVGIVLYLLFAAGI 488
G V +G +FGD+ S ISDTTI ++ G D I A+ AA + +V++ +
Sbjct: 167 GVVLSGAMFGDNLSIISDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVFTFSSQTA 226
Query: 489 RSP-------VVLLPIGLVLLIA 504
+SP + +LP +L++A
Sbjct: 227 QSPQTSDIEWLKVLPYLTILVLA 249
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.140 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193140284
Number of Sequences: 2977
Number of extensions: 7943334
Number of successful extensions: 27040
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26943
Number of HSP's gapped (non-prelim): 19
length of query: 533
length of database: 189,106,746
effective HSP length: 54
effective length of query: 479
effective length of database: 156,788,448
effective search space: 75101666592
effective search space used: 75101666592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 167 (69.5 bits)