BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2162 (PAB2162) DE:Hypothetical protein
(192 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75220 hypothetical protein PAB2162 - Pyrococcus abyssi (st... 376 e-103
pir||F71202 hypothetical protein PH1891 - Pyrococcus horikoshii ... 359 1e-98
gi|11499175 conserved hypothetical protein [Archaeoglobus fulgid... 124 7e-28
pir||S76806 hypothetical protein - Synechocystis sp. (strain PCC... 68 6e-11
>pir||C75220 hypothetical protein PAB2162 - Pyrococcus abyssi (strain Orsay)
>gi|5457719|emb|CAB49210.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 192
Score = 376 bits (955), Expect = e-103
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MGLLEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVK 60
MGLLEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVK
Sbjct: 1 MGLLEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVK 60
Query: 61 VAGDKWVMQVKQEYSQKVIHLMPKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEH 120
VAGDKWVMQVKQEYSQKVIHLMPKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEH
Sbjct: 61 VAGDKWVMQVKQEYSQKVIHLMPKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEH 120
Query: 121 IKRLLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLIKETFRKVIHAEYEDLVKKL 180
IKRLLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLIKETFRKVIHAEYEDLVKKL
Sbjct: 121 IKRLLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLIKETFRKVIHAEYEDLVKKL 180
Query: 181 EETESDKKNPTT 192
EETESDKKNPTT
Sbjct: 181 EETESDKKNPTT 192
>pir||F71202 hypothetical protein PH1891 - Pyrococcus horikoshii
>gi|3258330|dbj|BAA31013.1| (AP000007) 195aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 195
Score = 359 bits (911), Expect = 1e-98
Identities = 180/192 (93%), Positives = 189/192 (97%)
Query: 1 MGLLEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVK 60
MGLLEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEY+ERKSAIE+ K
Sbjct: 4 MGLLEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYAERKSAIEVTK 63
Query: 61 VAGDKWVMQVKQEYSQKVIHLMPKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEH 120
VAGDKWVMQVKQEYSQ+VIHLMPKPELTAGELKTLALIA+LQPVEQSKIVKLRGSQAYEH
Sbjct: 64 VAGDKWVMQVKQEYSQRVIHLMPKPELTAGELKTLALIAFLQPVEQSKIVKLRGSQAYEH 123
Query: 121 IKRLLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLIKETFRKVIHAEYEDLVKKL 180
IKRLLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLI+E FR+VIHAEYEDLVKKL
Sbjct: 124 IKRLLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLIREKFREVIHAEYEDLVKKL 183
Query: 181 EETESDKKNPTT 192
EETE+++ NPTT
Sbjct: 184 EETEANRNNPTT 195
>gi|11499175 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448865|pir||C69447 conserved hypothetical protein
AF1580 - Archaeoglobus fulgidus
>gi|2648974|gb|AAB89663.1| (AE000993) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 166
Score = 124 bits (308), Expect = 7e-28
Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)
Query: 4 LEDKALVEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAG 63
+E K +VEA LF + P+ +EL K G ++ L + ELI +Y R ++IEI+KV G
Sbjct: 1 MELKKIVEAILFSSSEPVDARELRKITGKDKVEILNAIGELI-KDYESRDTSIEIIKV-G 58
Query: 64 DKWVMQVKQEYSQKVIHLMPKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKR 123
+K++M+VK +Y++ V + E G L+TLA+IA QP+ +K+ K+RG++ YEH+K+
Sbjct: 59 EKYLMRVKPQYAEYVERFTVR-EFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYEHVKK 117
Query: 124 LLEMGLIYAEPYERTKLLGTTEKFAELYGFPENDPNLIKETFRKVIHAE 172
L E GL+ AE R+ +L TTE+FA +G +P IKE + + AE
Sbjct: 118 LQERGLVKAEKKGRSTILTTTEEFATYFGLDSAEPEKIKEALKGYLEAE 166
>pir||S76806 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653807|dbj|BAA18718.1| (D90916) hypothetical
protein [Synechocystis sp.]
Length = 162
Score = 68.3 bits (164), Expect = 6e-11
Identities = 41/144 (28%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 10 VEAALFVAGRPLSVKELSKALGIKSLDYLEKLIELIASEYSERKSAIEIVKVAGDKWVMQ 69
+EA L++ +P+++ +L G + + L+EL+ +Y+ R SA+EIV+ + +Q
Sbjct: 7 IEAILYLQAKPVAIADLVSISGQEKASVEDALMELM-EDYAHRDSALEIVET-NQGYSLQ 64
Query: 70 VKQEYSQKVIHLMPKPELTAGELKTLALIAYLQPVEQSKIVKLRGSQAYEHIKRLLEMGL 129
++ + + +P +L+ L+TLA IA P+ Q+ +++LRGS AY+ ++ L+E G
Sbjct: 65 LRAAFQHLIQDFVPA-DLSTASLRTLAAIAIKSPLLQTDLIELRGSGAYQQVQELVETGF 123
Query: 130 I--YAEPYERTKLLGTTEKFAELY 151
+ + R+ L T+KF + +
Sbjct: 124 VRKRKQTEGRSYWLEITDKFHQYF 147
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.133 0.356
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66199597
Number of Sequences: 2977
Number of extensions: 2549273
Number of successful extensions: 6465
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6461
Number of HSP's gapped (non-prelim): 4
length of query: 192
length of database: 189,106,746
effective HSP length: 60
effective length of query: 132
effective length of database: 153,197,526
effective search space: 20222073432
effective search space used: 20222073432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)