BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2165 (PAB2165) DE:Hypothetical protein
         (272 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75219 hypothetical protein PAB2165 - Pyrococcus abyssi (st...   543  e-153
pir||A71203 hypothetical protein PH1894 - Pyrococcus horikoshii ...   510  e-143

>pir||H75219 hypothetical protein PAB2165 - Pyrococcus abyssi (strain Orsay)
           >gi|5457716|emb|CAB49207.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 272
           
 Score =  543 bits (1383), Expect = e-153
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60
           MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA
Sbjct: 1   MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60

Query: 61  EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120
           EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK
Sbjct: 61  EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120

Query: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180
           VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL
Sbjct: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180

Query: 181 YGIMMEERSIEEPMEELLEEEIPEEKEENELLEKAKEDILNILRQKRTAISRKYILKKLG 240
           YGIMMEERSIEEPMEELLEEEIPEEKEENELLEKAKEDILNILRQKRTAISRKYILKKLG
Sbjct: 181 YGIMMEERSIEEPMEELLEEEIPEEKEENELLEKAKEDILNILRQKRTAISRKYILKKLG 240

Query: 241 DKYDEETIDDAITELLAQGEIYEPETGYYKLL 272
           DKYDEETIDDAITELLAQGEIYEPETGYYKLL
Sbjct: 241 DKYDEETIDDAITELLAQGEIYEPETGYYKLL 272


>pir||A71203 hypothetical protein PH1894 - Pyrococcus horikoshii
           >gi|3258333|dbj|BAA31016.1| (AP000007) 272aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 272
           
 Score =  510 bits (1298), Expect = e-143
 Identities = 246/272 (90%), Positives = 267/272 (97%)

Query: 1   MVIEMKKRMPATRLYIKDILEGYFVKSEGDFEPNYLITKYARKVYRAKIVGTVVREPLIA 60
           MV+EMKKR+PATR+YIKDILEGYFVKSEGDFEPNYLITKYARK+YRAKIVGTVVREPLIA
Sbjct: 1   MVVEMKKRLPATRVYIKDILEGYFVKSEGDFEPNYLITKYARKIYRAKIVGTVVREPLIA 60

Query: 61  EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVRKGDLVQVIGKIAEWRDDKQILVEGVSK 120
           EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLV+KGDLVQVIGKIAEWRDDKQILVEGV+K
Sbjct: 61  EDETYGKFQVDDGTGVIWVLGFRDDTKFAKLVKKGDLVQVIGKIAEWRDDKQILVEGVAK 120

Query: 121 VHPNMWILHRYETLKEKIEHIKKAKIALEIYNQYGITAKSKVIAKNKGIEEELLEVIDEL 180
           VHPNMWILHRYETLKEK+EHI+KAKIA +IYNQYGITAKSKVIAKNKG+ EELLEVIDEL
Sbjct: 121 VHPNMWILHRYETLKEKVEHIRKAKIAFDIYNQYGITAKSKVIAKNKGVPEELLEVIDEL 180

Query: 181 YGIMMEERSIEEPMEELLEEEIPEEKEENELLEKAKEDILNILRQKRTAISRKYILKKLG 240
           YGI+MEE+S+EEP+EELLEEE+ EE+E NEL+EKAKE+ILNILRQKR A+SRKYILKKLG
Sbjct: 181 YGIIMEEKSLEEPVEELLEEEVHEEREGNELIEKAKEEILNILRQKRIAVSRKYILKKLG 240

Query: 241 DKYDEETIDDAITELLAQGEIYEPETGYYKLL 272
           DKYDE+TI+DAITELLAQGEIYEPETGYYKLL
Sbjct: 241 DKYDEDTIEDAITELLAQGEIYEPETGYYKLL 272


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.138    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103423646
Number of Sequences: 2977
Number of extensions: 4583795
Number of successful extensions: 28064
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28062
Number of HSP's gapped (non-prelim): 2
length of query: 272
length of database: 189,106,746
effective HSP length: 58
effective length of query: 214
effective length of database: 154,394,500
effective search space: 33040423000
effective search space used: 33040423000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)