BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2174 (PAB2174) DE:Hypothetical protein
(452 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75217 hypothetical protein PAB2174 - Pyrococcus abyssi (st... 892 0.0
pir||E75217 transporter PAB2175 - Pyrococcus abyssi (strain Orsa... 132 1e-29
pir||E81781 probable integral membrane transport protein NMA2100... 79 1e-13
pir||A81206 sugar transporter, probable NMB0388 [imported] - Nei... 78 2e-13
pir||S74688 hypothetical protein sll1200 - Synechocystis sp. (st... 75 2e-12
sp|P96792|XYLP_LACPE PUTATIVE XYLOSE-PROTON SYMPORTER (XYLOSE TR... 70 4e-11
>pir||F75217 hypothetical protein PAB2174 - Pyrococcus abyssi (strain Orsay)
>gi|5457698|emb|CAB49189.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 452
Score = 892 bits (2281), Expect = 0.0
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MEFKYWRIFLLGFGFFGISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLP 60
MEFKYWRIFLLGFGFFGISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLP
Sbjct: 1 MEFKYWRIFLLGFGFFGISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLP 60
Query: 61 FLGALSDMTRTRIGRRKPYILLGAPSAAIMFALIPIARAHKNLALFMGVIVLMNFFMALF 120
FLGALSDMTRTRIGRRKPYILLGAPSAAIMFALIPIARAHKNLALFMGVIVLMNFFMALF
Sbjct: 61 FLGALSDMTRTRIGRRKPYILLGAPSAAIMFALIPIARAHKNLALFMGVIVLMNFFMALF 120
Query: 121 RSPVIAFMPDITPSEKRSQANGIINFMGGLGALLAYLGGKILYDINYAYPFYAGAAIMLI 180
RSPVIAFMPDITPSEKRSQANGIINFMGGLGALLAYLGGKILYDINYAYPFYAGAAIMLI
Sbjct: 121 RSPVIAFMPDITPSEKRSQANGIINFMGGLGALLAYLGGKILYDINYAYPFYAGAAIMLI 180
Query: 181 ANMIVVLFVPEPEQYRVPGEGIDIKKIFTETAKKSFGELKENLKDVFASHERSLLAILLA 240
ANMIVVLFVPEPEQYRVPGEGIDIKKIFTETAKKSFGELKENLKDVFASHERSLLAILLA
Sbjct: 181 ANMIVVLFVPEPEQYRVPGEGIDIKKIFTETAKKSFGELKENLKDVFASHERSLLAILLA 240
Query: 241 IFFWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIESTGAFIMGIVSLSFMIFAIP 300
IFFWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIESTGAFIMGIVSLSFMIFAIP
Sbjct: 241 IFFWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIESTGAFIMGIVSLSFMIFAIP 300
Query: 301 AGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSVSLTDPVIVKFMLLFFIAGIG 360
AGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSVSLTDPVIVKFMLLFFIAGIG
Sbjct: 301 AGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSVSLTDPVIVKFMLLFFIAGIG 360
Query: 361 WAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAANLVAPPLAGAFLDLIGYETLIPFAI 420
WAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAANLVAPPLAGAFLDLIGYETLIPFAI
Sbjct: 361 WAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAANLVAPPLAGAFLDLIGYETLIPFAI 420
Query: 421 VFFVLATITVQFVKRGDVKVGRKAIEYISDLD 452
VFFVLATITVQFVKRGDVKVGRKAIEYISDLD
Sbjct: 421 VFFVLATITVQFVKRGDVKVGRKAIEYISDLD 452
>pir||E75217 transporter PAB2175 - Pyrococcus abyssi (strain Orsay)
>gi|5457697|emb|CAB49188.1| (AJ248283) TRANSPORTER
[Pyrococcus abyssi]
Length = 430
Score = 132 bits (328), Expect = 1e-29
Identities = 119/462 (25%), Positives = 204/462 (43%), Gaps = 68/462 (14%)
Query: 6 WRIFLLGFGFFGIS--IIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLPFLG 63
W++ ++G F G S + W+L N + L ++ S + G I+ + + +L+ P LG
Sbjct: 6 WKV-VMGLAFLGFSRSVGWAL-NKGLSFPLLSSYTESAFIKGTILATEGIIGILIPPILG 63
Query: 64 ALSDMTRTRIGRRKPYILLGAPSAAIMFALIPIARA-HKNLALFMGVIVLMNFFMALFRS 122
SD +++ GRR+P+I++G A + LI + + LA F + + M L+ +
Sbjct: 64 YYSDKLKSKHGRRRPFIMIGGTMAGLSALLIYLTYSMGVPLAGFAATLGIFYLSMHLYTA 123
Query: 123 PVIAFMPDITPSEKRSQANGIINFMGGLGALLAY------------LGGK-----ILYDI 165
A MPD S +R +A+G+I + G L + L GK +L
Sbjct: 124 QFRALMPDTIESGERGKASGVITLLEWAGNLFLFGLTGYLIAKATELTGKEGSISVLAKT 183
Query: 166 NY-AYPFYAGAAIMLIANMIVVLFVPEPEQYRVPGEGIDIKKIFTETAKKSFGELKENLK 224
Y PF + ++ A + V V EP + D+K+ E L
Sbjct: 184 PYLKLPFIITSIFLIGAALFVYFVVKEP-------KAPDVKE-------------DEGLV 223
Query: 225 DVFAS--HERSLLAILLAIFFWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIEST 282
+ FAS + L A W+++F + F + Y LYG EE + + S
Sbjct: 224 EYFASIVRNKDFLKFYAAQTLWWMSFEFIAIFLYGILAYILYG--EATEEN--VKMVTSL 279
Query: 283 GAFIMGIVSLSFMIFAIPAGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSVSL 342
G F+M + +++ +I A+P G L K+GRR +I +G II + P +
Sbjct: 280 GLFLMALFNVTVLIGALPGGILYDKVGRRLSIIIGGIIFAL-------------PQIWGI 326
Query: 343 TDPVIVKFMLLFFIAGIGWAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAAN----LV 398
T + ++ IAGIGW ++ S P++ D+ T K +TG YY F +A L+
Sbjct: 327 TIRSRGEIIIALAIAGIGWGILVAASYPVIGDLLTRFKREAFTGRYYGFFEATRSLPVLL 386
Query: 399 APPLAGAFLDLI--GYETLIPFAIVFFVLATITVQFVKRGDV 438
A + GA +D Y L P + ++A + +++ +V
Sbjct: 387 AGTIGGAIVDAFNGNYRILFPLGALMVLIAMPMIWKIEKLEV 428
>pir||E81781 probable integral membrane transport protein NMA2100 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7380725|emb|CAB85316.1| (AL162758) putative integral
membrane transport protein [Neisseria meningitidis
Z2491]
Length = 451
Score = 78.8 bits (191), Expect = 1e-13
Identities = 105/461 (22%), Positives = 190/461 (40%), Gaps = 70/461 (15%)
Query: 8 IFLLGFGFFGISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLPFLGALSD 67
I++L FGF G+ ++L ++ + Q T G+ + L +L+ P +G SD
Sbjct: 21 IWMLSFGFLGVQTAFTLQSSQMSRIFQ-TLGADPHSLGWFFILPPLAGMLVQPIVGHYSD 79
Query: 68 MT-RTRIG-RRKPYILLGAPSAAIMFALIPIARAH-----KNLALFMG--VIVLMNFFMA 118
T + R+G RR PY+L G A I+ L+P + + AL G +I L++
Sbjct: 80 RTWKPRLGGRRLPYLLYGTLIAVIVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSN 139
Query: 119 LFRSPVIAFMPDITPSEKRSQANGIINFMGGLGALLA--------YLG-----GKILYDI 165
+ P + D+ E++ A GI +F+ GA++A Y+G K +
Sbjct: 140 MAMQPFKMMVGDMVNEEQKGYAYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQ 199
Query: 166 NYAYPFYAGAAIMLIANMIVVLFVPE--PEQYRVPGEGIDIKKIFTETAKKSFGELKENL 223
FY GAA+++I + + V E PE Y GID+ + + K N
Sbjct: 200 TVVVAFYVGAALLVITSAFTIFKVKEYNPETY-ARYHGIDV----------AANQEKANW 248
Query: 224 KDVFASHERSLLAILLAIFFWFIAFNSLETFFTSYVKYHLY----GIPIGAEETA----V 275
++ + ++ + L FF + AF + T+ + +++ +G +E V
Sbjct: 249 IELLKTAPKAFWTVTLVQFFCWFAFQYMWTYSAGAIAENVWHTTDASSVGYQEAGNWYGV 308
Query: 276 TRQIESTGAFIMGIVSLSFMIFAIPAGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQ 335
++S A I SF++ +P + K G + LG + V ++IG
Sbjct: 309 LAAVQSVAAVIC-----SFVLAKVPNKY--HKAGYFGCLALGALGFFSV----FFIGNQY 357
Query: 336 RPSSVSLTDPVIVKFMLLFFIAGIGWAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAA 395
+L + + GI WA + L +V + + + +G Y GL+
Sbjct: 358 A-------------LVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGTYLGLFNGSICMP 404
Query: 396 NLVAPPLAGAFLDLIG--YETLIPFAIVFFVLATITVQFVK 434
+VA L+ ++G T+ V +L +V +K
Sbjct: 405 QIVASLLSFVLFPMLGGLQATMFLVGGVVLLLGAFSVFLIK 445
>pir||A81206 sugar transporter, probable NMB0388 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225609|gb|AAF40828.1| (AE002394) sugar transporter,
putative [Neisseria meningitidis MC58]
Length = 451
Score = 78.4 bits (190), Expect = 2e-13
Identities = 105/461 (22%), Positives = 190/461 (40%), Gaps = 70/461 (15%)
Query: 8 IFLLGFGFFGISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLPFLGALSD 67
I++L FGF G+ ++L ++ + Q T G+ + L +L+ P +G SD
Sbjct: 21 IWMLSFGFLGVQTAFTLQSSQMSRIFQ-TLGADPHNLGWFFILPPLAGMLVQPIVGHYSD 79
Query: 68 MT-RTRIG-RRKPYILLGAPSAAIMFALIPIARAH-----KNLALFMG--VIVLMNFFMA 118
T + R+G RR PY+L G A I+ L+P + + AL G +I L++
Sbjct: 80 RTWKPRLGGRRLPYLLYGTLIAVIVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSN 139
Query: 119 LFRSPVIAFMPDITPSEKRSQANGIINFMGGLGALLA--------YLG-----GKILYDI 165
+ P + D+ E++ A GI +F+ GA++A Y+G K +
Sbjct: 140 MAMQPFKMMVGDMVNEEQKGYAYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQ 199
Query: 166 NYAYPFYAGAAIMLIANMIVVLFVPE--PEQYRVPGEGIDIKKIFTETAKKSFGELKENL 223
FY GAA+++I + + V E PE Y GID+ + + K N
Sbjct: 200 TVVVAFYVGAALLVITSAFTIFKVKEYDPETY-ARYHGIDV----------AANQEKANW 248
Query: 224 KDVFASHERSLLAILLAIFFWFIAFNSLETFFTSYVKYHLY----GIPIGAEETA----V 275
++ + ++ + L FF + AF + T+ + +++ +G +E V
Sbjct: 249 IELLKTAPKAFWTVTLVQFFCWFAFQYMWTYSAGAIAENVWHTTDASSVGYQEAGNWYGV 308
Query: 276 TRQIESTGAFIMGIVSLSFMIFAIPAGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQ 335
++S A I SF++ +P + K G + LG + V ++IG
Sbjct: 309 LAAVQSVAAVIC-----SFVLAKVPNKY--HKAGYFGCLALGALGFFSV----FFIGNQY 357
Query: 336 RPSSVSLTDPVIVKFMLLFFIAGIGWAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAA 395
+L + + GI WA + L +V + + + +G Y GL+
Sbjct: 358 A-------------LVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGTYLGLFNGSICMP 404
Query: 396 NLVAPPLAGAFLDLIG--YETLIPFAIVFFVLATITVQFVK 434
+VA L+ ++G T+ V +L +V +K
Sbjct: 405 QIVASLLSFVLFPMLGGLQATMFLVGGVVLLLGAFSVFLIK 445
>pir||S74688 hypothetical protein sll1200 - Synechocystis sp. (strain PCC 6803)
>gi|1651913|dbj|BAA16839.1| (D90901) hypothetical
protein [Synechocystis sp.]
Length = 391
Score = 74.5 bits (180), Expect = 2e-12
Identities = 84/379 (22%), Positives = 154/379 (40%), Gaps = 70/379 (18%)
Query: 18 ISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLPFLGALSDMTRTRIGRRK 77
++++W Y Y+ L+ V G ++T + + V++ P GALSD + +G R
Sbjct: 22 VTLMWITYRLYLGDLLKGWGFSPEFVVG-LLTFEMVLGVVMEPLFGALSDRQQQNLGTRF 80
Query: 78 PYILLGAPSAAIMFALIPIA--RAHKNLALFM--GVIVLMNFFMALFRSPVIAFMPDITP 133
P I LG AA F LIP+ N+A F+ + + M LFRSP + + P
Sbjct: 81 PLISLGVILAAGFFLLIPLVFFLPIANVARFLLPSLAIAWAIAMTLFRSPTMVLIGQCAP 140
Query: 134 SEKRSQANGIINFMGGLGALLAYLGGKILYDINYAYPFYAGAAIMLIANMIVVLFVPEPE 193
+ + A G+++ +GG+ A GK L + F G+ ++L A++ + +P
Sbjct: 141 TNQLPLAMGVLSLVGGIVATFRQPMGKWLLSLGSLPAFLLGSVVLLGASLFLSRVLPP-- 198
Query: 194 QYRVPGEGIDIKKIFTETAKKSFGELKENLKDVFASHERSLLAILLAIFFWFIAFNSLET 253
I+ K+ + ++F + +FA +L+ +
Sbjct: 199 --------IEKKEAISPATVRAFPWIAMVNIALFAIGTTWGTRVLMLV------------ 238
Query: 254 FFTSYVKYHLYGIPIGAEETAVTRQIESTGAFIMGIVSLSFMIFAIPAGFLGAKLGR--- 310
+T+Q+E +MG+ L + A+PAG+L K G
Sbjct: 239 ---------------------LTKQLEGISNGLMGLQFL-LALMALPAGWLIRKTGHPVA 276
Query: 311 RKTITLGLIIIVIVLGLSYYIGQVQRPSSVSLTDPVIVKFMLLFFIAGIGWAMVNVNSLP 370
T LGL+++ + L+ P I LL G +++N +P
Sbjct: 277 SLTTALGLLVLTLFCLLN------------GFWLPAIAFSWLL------GSSILNNGLIP 318
Query: 371 MVVDMTTEEKVGGYTGLYY 389
+++++ + G GLY+
Sbjct: 319 LLLEILQGNQTGVGIGLYF 337
>sp|P96792|XYLP_LACPE PUTATIVE XYLOSE-PROTON SYMPORTER (XYLOSE TRANSPORTER)
>gi|3688059|gb|AAC62250.1| (U89276) isoprimeverose
cation-symporter XylP [Lactobacillus pentosus]
Length = 479
Score = 70.2 bits (169), Expect = 4e-11
Identities = 73/357 (20%), Positives = 152/357 (42%), Gaps = 46/357 (12%)
Query: 16 FGISIIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLPFLGALSDMTRTRIGR 75
F ++ +SL + Y+ F D F +S + G + + + PF G + D T TR G+
Sbjct: 40 FACNLSFSLVSTYLMFFYTDVFGISAAIVGTLFLVARIVDAFDGPFWGIMIDHTHTRWGK 99
Query: 76 RKPYILLGAPSAAIMFAL---IPIARAHKNLALFMGVIVLMNFFMALFRSPVIAFMPDIT 132
+PY L A A+ L +P + + ++ + P+ + +P +T
Sbjct: 100 SRPYWLWFAIPFAVFSVLCFTVPNMSTGMKVVWAYVTYIGVDVLYSAVNIPITSILPSLT 159
Query: 133 PS-EKRSQANGIINFMGGLGA---------LLAYLGGKILYDINYAYPFYAGAAIMLIAN 182
+ ++R + I FMG LGA L+AY GG + A+ ++ A IM +
Sbjct: 160 SNPQERVTLSTIRQFMGTLGATIISTIALPLVAYFGGG---STSSAHGWFMVALIMAVIA 216
Query: 183 MIVVLFVPEPEQYRVPGEGIDIKKIFTETAKKSFGELKENLKDVFASHERSLLAILLAIF 242
M++ V + RV T +KKS +K +LK + + ++ F
Sbjct: 217 MVIFFIVFANTKERVQ----------TVQSKKSI-PIKTSLKAL--KRNWPWVIVIFINF 263
Query: 243 FWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIESTGAFIMGIVSLSFMIFAIPAG 302
+++ + + KY+++ + +FI+G+ L ++ +
Sbjct: 264 IYWLGMQTRSQVTVYFFKYNMHDATL--------------ASFILGL-QLVALLAVVITP 308
Query: 303 FLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSVSLTDPVIVKFMLLFFIAGI 359
+ ++G+R T+ +G+++ ++ G G + + ++T IV ++ F++G+
Sbjct: 309 WTAKRIGKRNTMLMGMLLAIV--GQLILWGGSKALNVPTITVGTIVGYLGTGFVSGL 363
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.147 0.432
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155110103
Number of Sequences: 2977
Number of extensions: 6340790
Number of successful extensions: 23011
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 22993
Number of HSP's gapped (non-prelim): 8
length of query: 452
length of database: 189,106,746
effective HSP length: 53
effective length of query: 399
effective length of database: 157,386,935
effective search space: 62797387065
effective search space used: 62797387065
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)