BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2175 (PAB2175) DE:TRANSPORTER
         (430 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75217 transporter PAB2175 - Pyrococcus abyssi (strain Orsa...   852  0.0
pir||F75217 hypothetical protein PAB2174 - Pyrococcus abyssi (st...   132  1e-29
pir||B75541 probable multidrug-efflux transporter - Deinococcus ...    70  4e-11

>pir||E75217 transporter PAB2175 - Pyrococcus abyssi (strain Orsay)
           >gi|5457697|emb|CAB49188.1| (AJ248283) TRANSPORTER
           [Pyrococcus abyssi]
           Length = 430
           
 Score =  852 bits (2177), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MGRFSWKVVMGLAFLGFSRSVGWALNKGLSFPLLSSYTESAFIKGTILATEGIIGILIPP 60
           MGRFSWKVVMGLAFLGFSRSVGWALNKGLSFPLLSSYTESAFIKGTILATEGIIGILIPP
Sbjct: 1   MGRFSWKVVMGLAFLGFSRSVGWALNKGLSFPLLSSYTESAFIKGTILATEGIIGILIPP 60

Query: 61  ILGYYSDKLKSKHGRRRPFIMIGGTMAGLSALLIYLTYSMGVPLAGFAATLGIFYLSMHL 120
           ILGYYSDKLKSKHGRRRPFIMIGGTMAGLSALLIYLTYSMGVPLAGFAATLGIFYLSMHL
Sbjct: 61  ILGYYSDKLKSKHGRRRPFIMIGGTMAGLSALLIYLTYSMGVPLAGFAATLGIFYLSMHL 120

Query: 121 YTAQFRALMPDTIESGERGKASGVITLLEWAGNLFLFGLTGYLIAKATELTGKEGSISVL 180
           YTAQFRALMPDTIESGERGKASGVITLLEWAGNLFLFGLTGYLIAKATELTGKEGSISVL
Sbjct: 121 YTAQFRALMPDTIESGERGKASGVITLLEWAGNLFLFGLTGYLIAKATELTGKEGSISVL 180

Query: 181 AKTPYLKLPFIITSIFLIGAALFVYFVVKEPKAPDVKEDEGLVEYFASIVRNKDFLKFYA 240
           AKTPYLKLPFIITSIFLIGAALFVYFVVKEPKAPDVKEDEGLVEYFASIVRNKDFLKFYA
Sbjct: 181 AKTPYLKLPFIITSIFLIGAALFVYFVVKEPKAPDVKEDEGLVEYFASIVRNKDFLKFYA 240

Query: 241 AQTLWWMSFEFIAIFLYGILAYILYGEATEENVKMVTSLGLFLMALFNVTVLIGALPGGI 300
           AQTLWWMSFEFIAIFLYGILAYILYGEATEENVKMVTSLGLFLMALFNVTVLIGALPGGI
Sbjct: 241 AQTLWWMSFEFIAIFLYGILAYILYGEATEENVKMVTSLGLFLMALFNVTVLIGALPGGI 300

Query: 301 LYDKVGRRLSIIIGGIIFALPQIWGITIRSRGEIIIALAIAGIGWGILVAASYPVIGDLL 360
           LYDKVGRRLSIIIGGIIFALPQIWGITIRSRGEIIIALAIAGIGWGILVAASYPVIGDLL
Sbjct: 301 LYDKVGRRLSIIIGGIIFALPQIWGITIRSRGEIIIALAIAGIGWGILVAASYPVIGDLL 360

Query: 361 TRFKREAFTGRYYGFFEATRSLPVLLAGTIGGAIVDAFNGNYRILFPLGALMVLIAMPMI 420
           TRFKREAFTGRYYGFFEATRSLPVLLAGTIGGAIVDAFNGNYRILFPLGALMVLIAMPMI
Sbjct: 361 TRFKREAFTGRYYGFFEATRSLPVLLAGTIGGAIVDAFNGNYRILFPLGALMVLIAMPMI 420

Query: 421 WKIEKLEVFS 430
           WKIEKLEVFS
Sbjct: 421 WKIEKLEVFS 430


>pir||F75217 hypothetical protein PAB2174 - Pyrococcus abyssi (strain Orsay)
           >gi|5457698|emb|CAB49189.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 452
           
 Score =  132 bits (328), Expect = 1e-29
 Identities = 119/462 (25%), Positives = 204/462 (43%), Gaps = 68/462 (14%)

Query: 6   WKV-VMGLAFLGFSRSVGWAL-NKGLSFPLLSSYTESAFIKGTILATEGIIGILIPPILG 63
           W++ ++G  F G S  + W+L N  +   L  ++  S  + G I+  + +  +L+ P LG
Sbjct: 6   WRIFLLGFGFFGIS--IIWSLYNAYIPIFLQDTFRMSRTVTGFIMTIDNLFAVLLLPFLG 63

Query: 64  YYSDKLKSKHGRRRPFIMIGGTMAGLSALLIYLTYSMGVPLAGFAATLGIFYLSMHLYTA 123
             SD  +++ GRR+P+I++G   A +   LI +  +    LA F   + +    M L+ +
Sbjct: 64  ALSDMTRTRIGRRKPYILLGAPSAAIMFALIPIARA-HKNLALFMGVIVLMNFFMALFRS 122

Query: 124 QFRALMPDTIESGERGKASGVITLLEWAGNLFLFGLTGYLIAKATELTGKEGSISVLAKT 183
              A MPD   S +R +A+G+I  +   G L  +            L GK     +L   
Sbjct: 123 PVIAFMPDITPSEKRSQANGIINFMGGLGALLAY------------LGGK-----ILYDI 165

Query: 184 PYLKLPFIITSIFLIGAALFVYFVVKEP-------KAPDVKE-------------DEGLV 223
            Y   PF   +  ++ A + V   V EP       +  D+K+              E L 
Sbjct: 166 NY-AYPFYAGAAIMLIANMIVVLFVPEPEQYRVPGEGIDIKKIFTETAKKSFGELKENLK 224

Query: 224 EYFASIVRNKDFLKFYAAQTLWWMSFEFIAIFLYGILAYILYG--EATEEN--VKMVTSL 279
           + FAS    +  L    A   W+++F  +  F    + Y LYG     EE    + + S 
Sbjct: 225 DVFAS--HERSLLAILLAIFFWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIEST 282

Query: 280 GLFLMALFNVTVLIGALPGGILYDKVGRRLSIIIGGIIFAL-------------PQIWGI 326
           G F+M + +++ +I A+P G L  K+GRR +I +G II  +             P    +
Sbjct: 283 GAFIMGIVSLSFMIFAIPAGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSVSL 342

Query: 327 TIRSRGEIIIALAIAGIGWGILVAASYPVIGDLLTRFKREAFTGRYYGFFEATRSLPVLL 386
           T     + ++   IAGIGW ++   S P++ D+ T  K   +TG YY F +A      L+
Sbjct: 343 TDPVIVKFMLLFFIAGIGWAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAAN----LV 398

Query: 387 AGTIGGAIVDAFNGNYRILFPLGALMVLIAMPMIWKIEKLEV 428
           A  + GA +D     Y  L P   +  ++A   +  +++ +V
Sbjct: 399 APPLAGAFLDLI--GYETLIPFAIVFFVLATITVQFVKRGDV 438


>pir||B75541 probable multidrug-efflux transporter - Deinococcus radiodurans
           (strain R1) >gi|6457931|gb|AAF09843.1|AE001887_3
           (AE001887) multidrug-efflux transporter, putative
           [Deinococcus radiodurans]
           Length = 544
           
 Score = 70.2 bits (169), Expect = 4e-11
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 11/158 (6%)

Query: 274 KMVTSLGLFLM-----ALFNVTVLIGALPGGILYDKVGRRLSIIIGGIIFALPQIWGITI 328
           ++++ LG F +       +++T  +     G L D+ GRR  I++G ++FAL  +    +
Sbjct: 47  RVISDLGGFHLYAWAFTAYSLTTTVTIPIVGTLSDRYGRRPLILLGIVVFALGSMGLGFV 106

Query: 329 RSRGEIIIALAIAGIGWGILVAASYPVIGDLLTRFKREAFTGRYYGFFEATRSLPVLLAG 388
           +S  ++I   AI GIG G L+A S+  I DL T  +R    GRY G+  A   +  ++  
Sbjct: 107 QSMEQLIALRAIQGIGGGTLMAMSFTAIADLFTPIER----GRYQGYTGAVWGISSVVGP 162

Query: 389 TIGGAIVDAFNGNYRILFPLGALMVLIAMPMIWKIEKL 426
            +GG + D F   +R +F L     L+A+  IW+  +L
Sbjct: 163 LVGGFLTDHF--GWRSVFFLNLPFALLALFFIWRFFRL 198


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.146    0.436 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155133262
Number of Sequences: 2977
Number of extensions: 6541839
Number of successful extensions: 23629
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23621
Number of HSP's gapped (non-prelim): 4
length of query: 430
length of database: 189,106,746
effective HSP length: 52
effective length of query: 378
effective length of database: 157,985,422
effective search space: 59718489516
effective search space used: 59718489516
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)