BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2176 (PAB2176) DE:Hypothetical
2-acetyl-1-alkylglycerophosphocholine esterase
         (286 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75217 probable 2-acetyl-1-alkylglycerophosph ocholine este...   594  e-169
dbj|BAB05027.1| (AP001511) unknown conserved protein [Bacillus h...   123  3e-27
sp|P54567|YQKD_BACSU HYPOTHETICAL 34.6 KD PROTEIN IN GLNQ-ANSR I...    87  2e-16

>pir||D75217 probable 2-acetyl-1-alkylglycerophosph ocholine esterase PAB2176 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5457696|emb|CAB49187.1| (AJ248283) hypothetical
           2-acetyl-1-alkylglycerophosph ocholine esterase
           [Pyrococcus abyssi]
           Length = 286
           
 Score =  594 bits (1514), Expect = e-169
 Identities = 286/286 (100%), Positives = 286/286 (100%)

Query: 1   MIWTWTILLFLTIIFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKSRDGITLRGW 60
           MIWTWTILLFLTIIFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKSRDGITLRGW
Sbjct: 1   MIWTWTILLFLTIIFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKSRDGITLRGW 60

Query: 61  WIDQGKDETVIVLHGYTASKWNEVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGD 120
           WIDQGKDETVIVLHGYTASKWNEVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGD
Sbjct: 61  WIDQGKDETVIVLHGYTASKWNEVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGD 120

Query: 121 KEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTG 180
           KEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTG
Sbjct: 121 KEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTG 180

Query: 181 ARGLKYFANLPEFLYPIIKPFTKMFSGAKEVNIIDYADKVRKPLLIIAGGNDPLVKVEEV 240
           ARGLKYFANLPEFLYPIIKPFTKMFSGAKEVNIIDYADKVRKPLLIIAGGNDPLVKVEEV
Sbjct: 181 ARGLKYFANLPEFLYPIIKPFTKMFSGAKEVNIIDYADKVRKPLLIIAGGNDPLVKVEEV 240

Query: 241 EEFYKRNKTINPRIEVWITDAAHVRTIVKYKEEWKRKVGEFLRANL 286
           EEFYKRNKTINPRIEVWITDAAHVRTIVKYKEEWKRKVGEFLRANL
Sbjct: 241 EEFYKRNKTINPRIEVWITDAAHVRTIVKYKEEWKRKVGEFLRANL 286


>dbj|BAB05027.1| (AP001511) unknown conserved protein [Bacillus halodurans]
           Length = 321
           
 Score =  123 bits (305), Expect = 3e-27
 Identities = 87/283 (30%), Positives = 149/283 (51%), Gaps = 17/283 (6%)

Query: 14  IFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKS-RDGITLRGWWI-------DQG 65
           I G   +VG+ +  P R V   +P D G  +E V F S +D + L+GWWI       + G
Sbjct: 36  IVGISVYVGWNLSHPEREVIDESPTDYGLLFEDVVFYSEKDEVELKGWWIPAQDNGEELG 95

Query: 66  KDETVIVLHGYTASKWN-EVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGDKEIL 124
            D  V+  HGY  S+   E  + P  + +A  GY++L FD+R  GES G+ TTIG  E  
Sbjct: 96  TDRAVVFSHGYRHSRLQGENDILPFAKRLAQEGYHLLLFDYRGSGESGGTYTTIGQYETD 155

Query: 125 DLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTGARGL 184
           DL  AI ++ +  + ++IA+IG+SMGA+  I A  + E V   IADSP   + +  +  L
Sbjct: 156 DLLSAIAFVKAEKHVEEIAVIGWSMGAVSAILATQQSEDVQIVIADSPFANLRQYLSENL 215

Query: 185 KYFANLPE--FLYPIIKPFTKMF-SGAKEVNIIDYADKV-RKPLLIIAGGNDPLVKVEEV 240
            ++++LP+  F + +++    +  +   +V+ +D    +    L +I G  D  +   + 
Sbjct: 216 SHWSDLPDVPFTWVVLQTIPVLIGADIDQVSPVDAVSPIGETKLFLIHGRWDEAIPHRDS 275

Query: 241 EEFYKRNKTINPRIEVWITD-AAHVRTIVKYKEEWKRKVGEFL 282
           E  +   +  + + E+W+ +   HV+TI +  EE++ ++  FL
Sbjct: 276 EAIF---EAADGQAELWLPENEGHVKTINEQSEEYEERILAFL 315


>sp|P54567|YQKD_BACSU HYPOTHETICAL 34.6 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
           >gi|7475333|pir||F69966 hypothetical protein yqkD -
           Bacillus subtilis >gi|1303981|dbj|BAA12636.1| (D84432)
           YqkD [Bacillus subtilis] >gi|2634799|emb|CAB14296.1|
           (Z99116) yqkD [Bacillus subtilis]
           Length = 305
           
 Score = 87.0 bits (212), Expect = 2e-16
 Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 20/250 (8%)

Query: 45  EKVEF--KSRDGITLRGWWI-DQGKDETVIVLHGYTASKWNEV-YMKPAIEIVANLGYNV 100
           EK  F   S  G  ++G+ +       T+I+ HG T +  N + YM     +  +LG+NV
Sbjct: 56  EKTAFVIPSAYGYDIKGYHVAPHDTPNTIIICHGVTMNVLNSLKYM----HLFLDLGWNV 111

Query: 101 LTFDFRAHGESEGSKTTIGDKEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAE 160
           L +D R HG+S G  T+ G  E  DL+  +  L + TN +   LIG    +M  + AL  
Sbjct: 112 LIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSLLKNKTNHR--GLIGIHGESMGAVTALLY 169

Query: 161 DERVCCG-----IADSPPIYIDKTGARGLKYFANLPEF-LYPIIKPFTKMFSG--AKEVN 212
               C       IAD P    D+  A  L+    LP + L PI   F K+  G  A+EV+
Sbjct: 170 AGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVS 229

Query: 213 IIDYADKVRKPLLIIAGGNDPLVKVEEVEEFYKRNKTINPRIEVWITDAAHVRTIVKYKE 272
            +   DK+ KP+L I   +D  + V   E  Y++ +   P+      +  H  +  K + 
Sbjct: 230 PLAVIDKIEKPVLFIHSKDDDYIPVSSTERLYEKKR--GPKALYIAENGEHAMSYTKNRH 287

Query: 273 EWKRKVGEFL 282
            +++ V EFL
Sbjct: 288 TYRKTVQEFL 297


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114037427
Number of Sequences: 2977
Number of extensions: 4841456
Number of successful extensions: 13870
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13864
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 189,106,746
effective HSP length: 51
effective length of query: 235
effective length of database: 158,583,909
effective search space: 37267218615
effective search space used: 37267218615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)