BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2176 (PAB2176) DE:Hypothetical
2-acetyl-1-alkylglycerophosphocholine esterase
(286 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75217 probable 2-acetyl-1-alkylglycerophosph ocholine este... 594 e-169
dbj|BAB05027.1| (AP001511) unknown conserved protein [Bacillus h... 123 3e-27
sp|P54567|YQKD_BACSU HYPOTHETICAL 34.6 KD PROTEIN IN GLNQ-ANSR I... 87 2e-16
>pir||D75217 probable 2-acetyl-1-alkylglycerophosph ocholine esterase PAB2176 -
Pyrococcus abyssi (strain Orsay)
>gi|5457696|emb|CAB49187.1| (AJ248283) hypothetical
2-acetyl-1-alkylglycerophosph ocholine esterase
[Pyrococcus abyssi]
Length = 286
Score = 594 bits (1514), Expect = e-169
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 1 MIWTWTILLFLTIIFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKSRDGITLRGW 60
MIWTWTILLFLTIIFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKSRDGITLRGW
Sbjct: 1 MIWTWTILLFLTIIFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKSRDGITLRGW 60
Query: 61 WIDQGKDETVIVLHGYTASKWNEVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGD 120
WIDQGKDETVIVLHGYTASKWNEVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGD
Sbjct: 61 WIDQGKDETVIVLHGYTASKWNEVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGD 120
Query: 121 KEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTG 180
KEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTG
Sbjct: 121 KEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTG 180
Query: 181 ARGLKYFANLPEFLYPIIKPFTKMFSGAKEVNIIDYADKVRKPLLIIAGGNDPLVKVEEV 240
ARGLKYFANLPEFLYPIIKPFTKMFSGAKEVNIIDYADKVRKPLLIIAGGNDPLVKVEEV
Sbjct: 181 ARGLKYFANLPEFLYPIIKPFTKMFSGAKEVNIIDYADKVRKPLLIIAGGNDPLVKVEEV 240
Query: 241 EEFYKRNKTINPRIEVWITDAAHVRTIVKYKEEWKRKVGEFLRANL 286
EEFYKRNKTINPRIEVWITDAAHVRTIVKYKEEWKRKVGEFLRANL
Sbjct: 241 EEFYKRNKTINPRIEVWITDAAHVRTIVKYKEEWKRKVGEFLRANL 286
>dbj|BAB05027.1| (AP001511) unknown conserved protein [Bacillus halodurans]
Length = 321
Score = 123 bits (305), Expect = 3e-27
Identities = 87/283 (30%), Positives = 149/283 (51%), Gaps = 17/283 (6%)
Query: 14 IFGFFAFVGYKMVTPPRRVGKWTPKDLGFDYEKVEFKS-RDGITLRGWWI-------DQG 65
I G +VG+ + P R V +P D G +E V F S +D + L+GWWI + G
Sbjct: 36 IVGISVYVGWNLSHPEREVIDESPTDYGLLFEDVVFYSEKDEVELKGWWIPAQDNGEELG 95
Query: 66 KDETVIVLHGYTASKWN-EVYMKPAIEIVANLGYNVLTFDFRAHGESEGSKTTIGDKEIL 124
D V+ HGY S+ E + P + +A GY++L FD+R GES G+ TTIG E
Sbjct: 96 TDRAVVFSHGYRHSRLQGENDILPFAKRLAQEGYHLLLFDYRGSGESGGTYTTIGQYETD 155
Query: 125 DLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAEDERVCCGIADSPPIYIDKTGARGL 184
DL AI ++ + + ++IA+IG+SMGA+ I A + E V IADSP + + + L
Sbjct: 156 DLLSAIAFVKAEKHVEEIAVIGWSMGAVSAILATQQSEDVQIVIADSPFANLRQYLSENL 215
Query: 185 KYFANLPE--FLYPIIKPFTKMF-SGAKEVNIIDYADKV-RKPLLIIAGGNDPLVKVEEV 240
++++LP+ F + +++ + + +V+ +D + L +I G D + +
Sbjct: 216 SHWSDLPDVPFTWVVLQTIPVLIGADIDQVSPVDAVSPIGETKLFLIHGRWDEAIPHRDS 275
Query: 241 EEFYKRNKTINPRIEVWITD-AAHVRTIVKYKEEWKRKVGEFL 282
E + + + + E+W+ + HV+TI + EE++ ++ FL
Sbjct: 276 EAIF---EAADGQAELWLPENEGHVKTINEQSEEYEERILAFL 315
>sp|P54567|YQKD_BACSU HYPOTHETICAL 34.6 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
>gi|7475333|pir||F69966 hypothetical protein yqkD -
Bacillus subtilis >gi|1303981|dbj|BAA12636.1| (D84432)
YqkD [Bacillus subtilis] >gi|2634799|emb|CAB14296.1|
(Z99116) yqkD [Bacillus subtilis]
Length = 305
Score = 87.0 bits (212), Expect = 2e-16
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 20/250 (8%)
Query: 45 EKVEF--KSRDGITLRGWWI-DQGKDETVIVLHGYTASKWNEV-YMKPAIEIVANLGYNV 100
EK F S G ++G+ + T+I+ HG T + N + YM + +LG+NV
Sbjct: 56 EKTAFVIPSAYGYDIKGYHVAPHDTPNTIIICHGVTMNVLNSLKYM----HLFLDLGWNV 111
Query: 101 LTFDFRAHGESEGSKTTIGDKEILDLSGAIDWLLSNTNTKKIALIGFSMGAMVTIRALAE 160
L +D R HG+S G T+ G E DL+ + L + TN + LIG +M + AL
Sbjct: 112 LIYDHRRHGQSGGKTTSYGFYEKDDLNKVVSLLKNKTNHR--GLIGIHGESMGAVTALLY 169
Query: 161 DERVCCG-----IADSPPIYIDKTGARGLKYFANLPEF-LYPIIKPFTKMFSG--AKEVN 212
C IAD P D+ A L+ LP + L PI F K+ G A+EV+
Sbjct: 170 AGAHCSDGADFYIADCPFACFDEQLAYRLRAEYRLPSWPLLPIADFFLKLRGGYRAREVS 229
Query: 213 IIDYADKVRKPLLIIAGGNDPLVKVEEVEEFYKRNKTINPRIEVWITDAAHVRTIVKYKE 272
+ DK+ KP+L I +D + V E Y++ + P+ + H + K +
Sbjct: 230 PLAVIDKIEKPVLFIHSKDDDYIPVSSTERLYEKKR--GPKALYIAENGEHAMSYTKNRH 287
Query: 273 EWKRKVGEFL 282
+++ V EFL
Sbjct: 288 TYRKTVQEFL 297
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.438
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114037427
Number of Sequences: 2977
Number of extensions: 4841456
Number of successful extensions: 13870
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13864
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 189,106,746
effective HSP length: 51
effective length of query: 235
effective length of database: 158,583,909
effective search space: 37267218615
effective search space used: 37267218615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)