BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2180 (PAB2180) DE:recombinase related
(247 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (str... 500 e-141
pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii ... 486 e-136
pir||H72384 conserved hypothetical protein - Thermotoga maritima... 403 e-111
pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (str... 378 e-104
pir||F64469 hypothetical protein MJ1359 - Methanococcus jannasch... 375 e-103
gb|AAK42049.1| Conserved hypothetical protein [Sulfolobus solfat... 336 1e-91
pir||H71240 hypothetical protein PH0186 - Pyrococcus horikoshii ... 195 5e-49
pir||F75205 hypothetical protein PAB0112 - Pyrococcus abyssi (st... 192 4e-48
gi|11499038 conserved hypothetical protein [Archaeoglobus fulgid... 166 2e-40
gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfat... 136 2e-31
pir||T44269 hypothetical protein KaiC [imported] - Synechococcus... 136 2e-31
pir||S76478 hypothetical protein - Synechocystis sp. (strain PCC... 130 2e-29
gb|AAG01686.1|AF222602_1 (AF222602) KaiC [Nodularia PCC73104] 130 2e-29
gb|AAG01690.1|AF222605_1 (AF222605) KaiC [Cylindrospermum PCC7417] 130 2e-29
pir||S76850 hypothetical protein - Synechocystis sp. (strain PCC... 121 1e-26
pir||S75060 conserved hypothetical protein sll1595 - Synechocyst... 111 6e-24
gb|AAG02174.1|AF239752_1 (AF239752) KaiC [Chroococcidiopsis ther... 105 6e-22
gb|AAG01688.1|AF222603_1 (AF222603) KaiC [Chlorogloeopsis fritsc... 103 2e-21
gb|AAG01689.1|AF222604_1 (AF222604) KaiC [Geitlerinema PCC7105] 102 3e-21
gb|AAG02175.1|AF239753_1 (AF239753) KaiC [Nostoc muscorum] 101 7e-21
pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (str... 101 1e-20
gb|AAG01684.1|AF222600_1 (AF222600) KaiC [Scytonema PCC7110] 98 1e-19
gb|AAG02177.1|AF239755_1 (AF239755) KaiC [Gloeobacter violaceus] 98 1e-19
pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii ... 98 1e-19
pir||E75070 recombinase related PAB0642 - Pyrococcus abyssi (str... 98 1e-19
pir||D69012 conserved hypothetical protein MTH1094 - Methanobact... 97 2e-19
pir||D71095 hypothetical protein PH1025 - Pyrococcus horikoshii ... 96 5e-19
gi|11497963 conserved hypothetical protein [Archaeoglobus fulgid... 95 7e-19
gb|AAG01685.1|AF222601_1 (AF222601) KaiC [Xenococcus PCC7305] >g... 95 7e-19
gi|11498064 conserved hypothetical protein [Archaeoglobus fulgid... 94 2e-18
gb|AAG20092.1| (AE005088) circadian regulator; KaiC [Halobacteri... 92 8e-18
pir||A71241 hypothetical protein PH0187 - Pyrococcus horikoshii ... 92 8e-18
gb|AAG01683.1|AF222599_1 (AF222599) KaiC [Chroococcidiopsis PCC6... 91 1e-17
pir||G75205 hypothetical protein PAB0113 - Pyrococcus abyssi (st... 89 5e-17
pir||F69178 conserved hypothetical protein MTH593 - Methanobacte... 85 1e-15
gi|11498401 conserved hypothetical protein [Archaeoglobus fulgid... 75 1e-12
>pir||G75216 recombinase related PAB2180 - Pyrococcus abyssi (strain Orsay)
>gi|5457691|emb|CAB49182.1| (AJ248283) recombinase
related [Pyrococcus abyssi]
Length = 247
Score = 500 bits (1274), Expect = e-141
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60
MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE
Sbjct: 1 MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60
Query: 61 EHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 120
EHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL
Sbjct: 61 EHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 120
Query: 121 RQAIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
RQAIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFG
Sbjct: 121 RQAIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
Query: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLK 240
GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLK
Sbjct: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLK 240
Query: 241 RGKILEL 247
RGKILEL
Sbjct: 241 RGKILEL 247
>pir||E71453 hypothetical protein PH0284 - Pyrococcus horikoshii
>gi|3256673|dbj|BAA29356.1| (AP000001) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 486 bits (1237), Expect = e-136
Identities = 234/247 (94%), Positives = 246/247 (98%)
Query: 1 MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60
MTRR+KTGIPG+D+ILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL+MGEPGIYVALE
Sbjct: 6 MTRRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 65
Query: 61 EHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 120
EHPVQVRQNMAQFGWDV+ YEE+GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL
Sbjct: 66 EHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 125
Query: 121 RQAIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
RQAIRDINAKRVVVDSVTTLYINKPA+ARSIILQLKRVLAGTGCTSIFVSQ+SVGERGFG
Sbjct: 126 RQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFG 185
Query: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLK 240
GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPF+ITDKGI+VYPD+VLK
Sbjct: 186 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYPDKVLK 245
Query: 241 RGKILEL 247
RGK+LEL
Sbjct: 246 RGKVLEL 252
>pir||H72384 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980874|gb|AAD35457.1|AE001717_3 (AE001717)
conserved hypothetical protein [Thermotoga maritima]
Length = 253
Score = 403 bits (1024), Expect = e-111
Identities = 187/235 (79%), Positives = 215/235 (90%)
Query: 1 MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60
M +R+KTGIPGMD+ILHGGIPERN+VL+SGGPGTGKTIFSQQF+WNGLQMGEPGIYVALE
Sbjct: 12 MIKRVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALE 71
Query: 61 EHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 120
EHPVQV++NM FGW+V +E+EG FA+VDAFT GIG+ E EKY+V D+ D+RE EVL
Sbjct: 72 EHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVRDIDDVRELAEVL 131
Query: 121 RQAIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
++A+R+ AKRVV+DSVTTLYI KPA+ARSII QLKR+L+G GCTS+FVSQ+SV E+GFG
Sbjct: 132 KRAVRETQAKRVVIDSVTTLYITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEKGFG 191
Query: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIV+YP
Sbjct: 192 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIYP 246
>pir||B72631 hypothetical protein APE1505 - Aeropyrum pernix (strain K1)
>gi|5105190|dbj|BAA80504.1| (AP000061) 251aa long
hypothetical protein [Aeropyrum pernix]
Length = 251
Score = 378 bits (960), Expect = e-104
Identities = 176/240 (73%), Positives = 211/240 (87%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
R+KTGIPGMDDIL+GGIP RNVVLLSGGPGTGK+IFS Q+LWNGL+ GEPG++VALEEHP
Sbjct: 7 RVKTGIPGMDDILYGGIPRRNVVLLSGGPGTGKSIFSYQYLWNGLREGEPGVFVALEEHP 66
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
VQVR NMAQFGWDVR+YE +G+FA+VDAFT+GIG++ + E+Y+V D D+ I+VL++A
Sbjct: 67 VQVRINMAQFGWDVREYERQGLFAVVDAFTSGIGEAAKKERYVVTDPEDVGLLIDVLKEA 126
Query: 124 IRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPG 183
IRD+ AKRV VDSV+TLY+ KP LAR ++ LKRVL+G G TSI VSQ+SV ERGFGGPG
Sbjct: 127 IRDVGAKRVAVDSVSTLYLAKPVLARRTVMLLKRVLSGLGTTSILVSQVSVTERGFGGPG 186
Query: 184 VEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLKRGK 243
VEH DGIIRLDLDE+DGEL RSLI+WKMRGT HSMRRHPFEITDKGI+VYPD+V++ G+
Sbjct: 187 VEHAADGIIRLDLDEVDGELVRSLIIWKMRGTKHSMRRHPFEITDKGIIVYPDKVVRIGR 246
>pir||F64469 hypothetical protein MJ1359 - Methanococcus jannaschii
>gi|1592003|gb|AAB99368.1| (U67576) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 242
Score = 375 bits (953), Expect = e-103
Identities = 178/239 (74%), Positives = 208/239 (86%), Gaps = 1/239 (0%)
Query: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEE 61
+R+KTGIPGMD+ILHGGIPERNVVLLSGGPGTGK+IF QQFL+ G+ EP I VALEE
Sbjct: 2 KRVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFCQQFLYKGVVDYNEPSILVALEE 61
Query: 62 HPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 121
HPVQ+R+NM QFGWD+RK EEEG FA++DAFT GIG + + EKY+V+D D RE I+VL+
Sbjct: 62 HPVQIRENMRQFGWDIRKLEEEGKFAIIDAFTYGIGSAAKREKYVVNDPNDERELIDVLK 121
Query: 122 QAIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGG 181
AI DI AKR+ +DSVTTLYINKP LAR + LKRV++G GCT+IF SQISVGERGFGG
Sbjct: 122 TAINDIGAKRIGIDSVTTLYINKPMLARRTVFLLKRVISGLGCTAIFTSQISVGERGFGG 181
Query: 182 PGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLK 240
PGVEH VDGIIRLDLDEIDGELKRSLIVWKMRGTSHS++RHPF+IT++GI+VYPD+VLK
Sbjct: 182 PGVEHAVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSLKRHPFDITNEGIIVYPDKVLK 240
>gb|AAK42049.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 280
Score = 336 bits (853), Expect = 1e-91
Identities = 154/238 (64%), Positives = 197/238 (82%)
Query: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEH 62
+R+KT IPG+D+IL+GGIPER++VL+SGGPGTGK+I +QFL+NGL GE G+++ALEEH
Sbjct: 2 KRVKTYIPGLDEILYGGIPERHIVLVSGGPGTGKSILGKQFLYNGLTKGEGGVFIALEEH 61
Query: 63 PVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122
PV VR++ F WDVRKYE EG FA++D FT GIG + EKY+V + D++E E +R
Sbjct: 62 PVSVRRSFEHFKWDVRKYEREGKFAIIDTFTGGIGNVAQREKYVVKSIDDVKELSENIRA 121
Query: 123 AIRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGP 182
AI+DINA R+VVDSV+TLY+ KPA+ARSI++QLKRV++G GCT+IFVSQ+SVGERGFGGP
Sbjct: 122 AIKDINATRIVVDSVSTLYLTKPAMARSIVMQLKRVISGLGCTAIFVSQVSVGERGFGGP 181
Query: 183 GVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPDRVLK 240
GVEH VDGIIRLDLDE++G + RS+I+WKMR T SM RHP +ITD GI+V D+ LK
Sbjct: 182 GVEHAVDGIIRLDLDEVEGVMYRSIIIWKMRDTKISMVRHPMDITDNGIIVQWDKYLK 239
>pir||H71240 hypothetical protein PH0186 - Pyrococcus horikoshii
>gi|3256572|dbj|BAA29255.1| (AP000001) 251aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 251
Score = 195 bits (490), Expect = 5e-49
Identities = 101/238 (42%), Positives = 154/238 (64%), Gaps = 6/238 (2%)
Query: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEE 61
RR+K+GIPG D+++ GG PE VLL+GG GTGKT F+ QF++ G + GEPG++V LEE
Sbjct: 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69
Query: 62 HPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 121
+R+ MA FGWD KYE+EG A+VD ++ +G E EK+++ D ++ F+ +
Sbjct: 70 RARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSE-EKFVLEDRFNVDNFLRYIY 128
Query: 122 QAIRDINAKRVVVDSVTT--LYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG- 178
+ ++ INAKR+V+DS+ + L + + R ++L+L +L G T+I ++ + G
Sbjct: 129 RVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGK 188
Query: 179 FGGPGVEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
G+E + G+I LDL E + ELKR +++ KMR T HSM+++PFEI GIVVYP
Sbjct: 189 LSRYGIEEFIARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246
>pir||F75205 hypothetical protein PAB0112 - Pyrococcus abyssi (strain Orsay)
>gi|5457602|emb|CAB49093.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 192 bits (482), Expect = 4e-48
Identities = 96/238 (40%), Positives = 154/238 (64%), Gaps = 6/238 (2%)
Query: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEE 61
RR+K+GIPG D+++ GG PE VL++GG GTGKT F+ QF++ G + GEPG++V LEE
Sbjct: 10 RRVKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69
Query: 62 HPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 121
+R+ MA FGWD KYE+EG A++D ++ +G E E++++ D ++ F+ +
Sbjct: 70 RASDLRREMATFGWDFEKYEKEGKIAIIDGVSSVVGLPSE-ERFVLEDRFNVDNFLRYIY 128
Query: 122 QAIRDINAKRVVVDSVTT--LYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG- 178
+ ++ INAKR+V+DS+ + L + + R ++L+L +L G T++ ++ + G
Sbjct: 129 RVVKTINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTLLTTEAPDPQHGK 188
Query: 179 FGGPGVEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
G+E + G++ LDL E + ELKR +++ KMR T HSM+++PFEI GIVVYP
Sbjct: 189 LSRYGIEEFIARGVVVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYP 246
>gi|11499038 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448143|pir||B69430 conserved hypothetical protein
AF1443 - Archaeoglobus fulgidus
>gi|2649128|gb|AAB89805.1| (AE001004) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 248
Score = 166 bits (416), Expect = 2e-40
Identities = 100/243 (41%), Positives = 144/243 (59%), Gaps = 14/243 (5%)
Query: 1 MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQM-GEPGIYVAL 59
M R+ TGIPG D++ GG+ L+SG G+GKTIF+ Q+L NG++ EPG++VA
Sbjct: 4 MLERVPTGIPGFDELCSGGLLRDRSYLVSGPSGSGKTIFAMQYLVNGIEKYNEPGVFVAT 63
Query: 60 EEHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEV 119
EE P +R++ FGWD+ KYE+E M A+VDA + IG + E+YI D R ++
Sbjct: 64 EERPQHLREHFLTFGWDLEKYEDENMLAIVDATSTKIGLPSD-ERYIDVRPFDTRSLLDQ 122
Query: 120 LRQAIRDINAKRVVVDSVTTL--YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGER 177
+ +I A+R VVDS T++ I+ PA R +L++ + G TSI ++ G
Sbjct: 123 IITIQDEIGARRAVVDSTTSIGFTISDPAKFRVELLKISTTMEILGLTSILTCEVVEG-- 180
Query: 178 GFGGP-----GVEH-GVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
GG GVE+ V+G I L I+ RS+ ++KMRGT+HS + HPFEIT+ GI
Sbjct: 181 --GGDKISRFGVENFVVEGTIVLYYTRIENTRVRSIEIFKMRGTNHSSKIHPFEITENGI 238
Query: 232 VVY 234
VVY
Sbjct: 239 VVY 241
>gb|AAK42592.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 262
Score = 136 bits (340), Expect = 2e-31
Identities = 92/238 (38%), Positives = 134/238 (55%), Gaps = 14/238 (5%)
Query: 1 MTRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALE 60
M R+ TGI D ++ GGIP+ + L+G PGTGKTIFS F+ GL+ G+P IYV E
Sbjct: 1 MVSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
Query: 61 EHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVL 120
E + + QF WD +Y E+ + ++DA K KE +++ + +LT E + +
Sbjct: 61 ESRDSIIRQAKQFNWDFEEYIEKKLI-IIDALM----KEKE-DQWSLVNLTP-EELVNKV 113
Query: 121 RQAIRDIN--AKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG 178
+A + + R+V+DSV+ L+++KPA+AR I LKRVL T SQ ++
Sbjct: 114 IEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQ 173
Query: 179 FGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEI---TDKGIVV 233
G GVEH DGIIR +GEL R +++ KMR T H +H +EI KGIV+
Sbjct: 174 AFGFGVEHVADGIIRFRRMIRNGELHRYILIEKMRQTDHD--KHVWEIDIVNGKGIVL 229
>pir||T44269 hypothetical protein KaiC [imported] - Synechococcus sp. (strain
PCC 7942) >gi|4156230|dbj|BAA37103.1| (AB010691) KaiC
[Synechococcus sp.]
Length = 519
Score = 136 bits (340), Expect = 2e-31
Identities = 84/236 (35%), Positives = 131/236 (54%), Gaps = 11/236 (4%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG-LQMGEPGIYVALEEH 62
+++T I G DDI HGG+P L+SG GTGKT+FS QFL+NG ++ EPG++V EE
Sbjct: 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79
Query: 63 PVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122
P + +N FGWD+ K +EG ++DA S + E V D+ IE +
Sbjct: 80 PQDIIKNARSFGWDLAKLVDEGKLFILDA-------SPDPEGQEVVGGFDLSALIERINY 132
Query: 123 AIRDINAKRVVVDSVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
AI+ A+RV +DSVT+++ + ++ R + +L L G T++ ++
Sbjct: 133 AIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIA 192
Query: 181 GPGVEHGVDGIIRLDLDEIDGE-LKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
GVE V + + + ++GE +R+L + K+RGTSH +PF ITD GI ++P
Sbjct: 193 RYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFP 248
Score = 87.4 bits (213), Expect = 2e-16
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 32/237 (13%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
R+ +G+ +D++ GG + +++L +G GTGKT+ +F+ N E I A EE
Sbjct: 262 RVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR 321
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
Q+ +N +G D + E + + +V A+ G + + +++++
Sbjct: 322 AQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG---------------LEDHLQIIKSE 366
Query: 124 IRDINAKRVVVDSVTTLYINKPALARSIILQLKR--VLAGTG------CTSIF--VSQIS 173
I D R+ +DS++ ALAR + R V+ TG T +F S
Sbjct: 367 INDFKPARIAIDSLS-------ALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQF 419
Query: 174 VGERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKG 230
+G + D II L EI GE+ R++ V+KMRG+ H F I+DKG
Sbjct: 420 MGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKG 476
>pir||S76478 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653695|dbj|BAA18607.1| (D90915) hypothetical
protein [Synechocystis sp.]
Length = 505
Score = 130 bits (323), Expect = 2e-29
Identities = 82/237 (34%), Positives = 129/237 (53%), Gaps = 12/237 (5%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
+++TGIPG D + GG+P L++G G+ KTIF+ QFL G+Q GE G++V EE P
Sbjct: 11 KLETGIPGFDFLSDGGLPLGRATLIAGTAGSAKTIFASQFLVEGIQRGENGVFVTFEEPP 70
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
+R+NM FGWD++++E EG + VDA + ++ IV D+ I + A
Sbjct: 71 KALRKNMRGFGWDIQQWENEGKWVFVDA------SPQPGDRPIVSGEYDLGALIARIEHA 124
Query: 124 IRDINAKRVVVDSVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG-FG 180
+R A R+ +DS+ ++ ++ A RS + +L L G T+I ++ V E G
Sbjct: 125 VRKYKASRISLDSLGAIFSHLSDSAQVRSDLFRLASALRELGVTAIMTAE-RVEEYGEIS 183
Query: 181 GPGVEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITD-KGIVVYP 235
GVE V D ++ + D + +R++ + K RGT H PF I + KGIV+ P
Sbjct: 184 RYGVEEFVADNVVIVRNVLADEKRRRTIEILKYRGTDHQKGEFPFTIINKKGIVIIP 240
Score = 78.8 bits (191), Expect = 6e-14
Identities = 59/231 (25%), Positives = 104/231 (44%), Gaps = 18/231 (7%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
RI +G +D + G +++L+SG GTGKT+ +F+ G+ GE + A EE
Sbjct: 254 RITSGSEELDRMCGSGFFRDSIILVSGATGTGKTLMVTEFMDGGVANGERCLVFAFEESR 313
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
Q+ +N +G D ++ E+EG +V + + T++ + +++
Sbjct: 314 EQLIRNATGWGVDFKQMEKEGKLKVVCRYP---------------ETTNLENHLIMMKDI 358
Query: 124 IRDINAKRVVVDSVTTL-YINKPALARSIILQLKRVLAGTGCTSIFVSQIS--VGERGFG 180
I++ RV VDS++ L ++ R I+ L + +F S +G
Sbjct: 359 IQEFKPNRVAVDSLSALERVSTLKSFREFIIGLTSFIKQQEIGGLFTSTTPNLLGGASIT 418
Query: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
+ D II L E+ GE++R + V KMRG+ H F I +G+
Sbjct: 419 DAHISTITDSIILLRYVEMYGEMRRGITVLKMRGSMHDKDIREFSIDHQGM 469
>gb|AAG01686.1|AF222602_1 (AF222602) KaiC [Nodularia PCC73104]
Length = 269
Score = 130 bits (323), Expect = 2e-29
Identities = 81/236 (34%), Positives = 129/236 (54%), Gaps = 11/236 (4%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEEH 62
+I+T I G DDI HGG+P L+SG GTGKT+FS QFL+NG+ + EPG++V EE
Sbjct: 19 KIRTMIEGFDDISHGGLPVGRTTLVSGTSGTGKTLFSLQFLYNGITRSDEPGVFVTFEES 78
Query: 63 PVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122
P + +N FGW++++ +EG ++DA S + E + D+ IE L+
Sbjct: 79 PSDIIKNAQIFGWNLQRLIDEGKLFILDA-------SPDPEGQDIVGNFDLSALIERLQY 131
Query: 123 AIRDINAKRVVVDSVTTLYINKPAL--ARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
AIR A+RV +DS+T ++ A+ R I +L L T+I ++
Sbjct: 132 AIRKYKAQRVSIDSITAVFQQYEAMGVVRREIFRLVARLKQLYVTTIITTERXEEYGSVA 191
Query: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLI-VWKMRGTSHSMRRHPFEITDKGIVVYP 235
GVE V + + + ++GE +R I + K+RGT+H +P IT++G+ ++P
Sbjct: 192 SFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPSTITNEGVNIFP 247
>gb|AAG01690.1|AF222605_1 (AF222605) KaiC [Cylindrospermum PCC7417]
Length = 269
Score = 130 bits (323), Expect = 2e-29
Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 11/236 (4%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQ-MGEPGIYVALEEH 62
+I+T I G DDI HGG+P L+SG GTGKT+ S QFL+NG+ E G++V EE
Sbjct: 19 KIRTMIEGFDDISHGGLPIGRTTLVSGTSGTGKTLLSLQFLYNGITCFDEAGVFVTFEES 78
Query: 63 PVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122
P + +N FGW++ + EEG ++DA S + E + D+ IE L+
Sbjct: 79 PSDIIKNANIFGWNLHRLIEEGKLFILDA-------SPDPEGQDIVGNFDLSALIERLQY 131
Query: 123 AIRDINAKRVVVDSVTTLYINKPAL--ARSIILQLKRVLAGTGCTSIFVSQISVGERGFG 180
AIR AKRV +DS+T ++ A+ R I +L L T+I ++ S
Sbjct: 132 AIRKYKAKRVSIDSITAVFQQYEAMGVVRREIFRLVARLKQLSVTTIITTERSEEYGPVA 191
Query: 181 GPGVEHGVDGIIRLDLDEIDGELKRSLI-VWKMRGTSHSMRRHPFEITDKGIVVYP 235
GVE V + + + ++GE +R I + K+RGT+H +PF IT+ G+ ++P
Sbjct: 192 SFGVEEFVSDNVVIVRNVLEGERRRRTIEILKLRGTTHMKGEYPFTITNAGVNIFP 247
>pir||S76850 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653852|dbj|BAA18762.1| (D90917) hypothetical
protein [Synechocystis sp.]
Length = 519
Score = 121 bits (300), Expect = 1e-26
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 13/238 (5%)
Query: 3 RRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEE 61
++I+T I G D+I HGG+P L+SG GTGKT+ + QFL+ G+ PG+++ EE
Sbjct: 20 QKIRTVIEGFDEITHGGLPIGRTTLVSGTSGTGKTLLAVQFLYQGIHHFDYPGLFITFEE 79
Query: 62 HPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 121
P + +N FGWD+++ ++G ++DA S + E V D+ IE ++
Sbjct: 80 SPSDIIENAYSFGWDLQQLIDDGKLFILDA-------SPDPEGQEVVGTFDLSALIERIQ 132
Query: 122 QAIRDINAKRVVVDSVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG- 178
A+R AK V +DSVT ++ + ++ R I +L L TSI ++ V E G
Sbjct: 133 YAVRKYKAKLVSIDSVTAVFQQYDAASVVRREIFRLVARLKQLQVTSIMTTE-RVEEYGP 191
Query: 179 FGGPGVEHGVDGIIRLDLDEIDGELKRSLI-VWKMRGTSHSMRRHPFEITDKGIVVYP 235
GVE V + + + ++GE +R + + K+RGT+H +PF IT GI ++P
Sbjct: 192 IARFGVEEFVSDNVVVLRNVLEGERRRRTVEILKLRGTTHMKGEYPFTITHDGINIFP 249
Score = 83.1 bits (202), Expect = 3e-15
Identities = 60/237 (25%), Positives = 107/237 (44%), Gaps = 32/237 (13%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
RI +G+ +D++ GG + +++L +G GTGKT+ +FL G + E I A EE
Sbjct: 263 RISSGVQTLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLQEGCRQRERAILFAYEESR 322
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
Q+ +N + +G D + E +G+ ++ + G + + +++++
Sbjct: 323 AQLSRNASSWGIDFEEMEHKGLLKLLCTYPESAG---------------LEDHLQMIKSE 367
Query: 124 IRDINAKRVVVDSVTTLYINKPALARSIILQLKR--VLAGTG------CTSIFVSQIS-- 173
I + R+ +DS++ ALAR + R V+ TG T F +
Sbjct: 368 ISEFKPSRIAIDSLS-------ALARGVTNNAFRQFVIGVTGYAKQEEITGFFTNTTDQF 420
Query: 174 VGERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKG 230
+G + D I+ L EI GE+ R+L V+KMRG+ H + I+ G
Sbjct: 421 MGAHSITESHISTITDTILMLQYVEIRGEMSRALNVFKMRGSWHDKGIREYSISHDG 477
>pir||S75060 conserved hypothetical protein sll1595 - Synechocystis sp. (strain
PCC 6803) >gi|1653005|dbj|BAA17922.1| (D90910)
hypothetical protein [Synechocystis sp.]
Length = 568
Score = 111 bits (276), Expect = 6e-24
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 7 TGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG-LQMGEPGIYVALEEHPVQ 65
TGI G D+I +GG+P+ L+ G G GKT+F +FL G ++ GEPG+ V+ EE +
Sbjct: 15 TGIQGFDEITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVEYGEPGVLVSFEESAKE 74
Query: 66 VRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIR 125
+ QN+A GW+++ E ++D + +E +Y D+ L AI
Sbjct: 75 IIQNVASLGWNLQDLVAEEKI-LIDHIYVEASEIQETGEY------DLEALFIRLGYAIN 127
Query: 126 DINAKRVVVDSVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPG 183
I AKR+++D++ L+ + + R+ + +L L G T++ + G++ G
Sbjct: 128 KIGAKRILLDTIEVLFSGLENTNIVRAELRRLFHWLKQKGVTAVITGE--RGDKNLTRQG 185
Query: 184 VEHGV-DGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
+E V D +I+LD ++ R++ V K RG+ HS +PF I + GI V P
Sbjct: 186 LEEYVSDCVIKLDQKTVEEVATRTIQVVKYRGSRHSNNEYPFLIEENGISVLP 238
Score = 73.4 bits (177), Expect = 3e-12
Identities = 63/234 (26%), Positives = 106/234 (44%), Gaps = 22/234 (9%)
Query: 4 RIKTGIPGMDDILHG-GIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEH 62
RI TGIP +DD+ G G + +L++G GTGKT + F GE +Y+A EE
Sbjct: 252 RISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAFFAQATCLRGERCLYLATEES 311
Query: 63 PVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQ 122
P Q+ +N+ G D+ Y + + DA T + E + +H
Sbjct: 312 PQQICRNLNSIGLDLSPYLDSQLL-QFDA-TRPTNYNLEMRLFKIHSW------------ 357
Query: 123 AIRDINAKRVVVDSVTTLYIN-KPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGG 181
+R+ VVVD ++ L + ++ ++L L T +F++ ++ G G+
Sbjct: 358 -VRNFKPSLVVVDPMSNLITSGNLNQTKNFFMRLIDYLKSQKIT-VFLTDLTGGNVGYDN 415
Query: 182 PGVEHGVDGI----IRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
E GV + + L I+GE R L + K RG +HS + F +++ G+
Sbjct: 416 EQTEVGVSSLMDTWLELQTLRINGERNRILYILKSRGMAHSNQVREFILSNDGV 469
>gb|AAG02174.1|AF239752_1 (AF239752) KaiC [Chroococcidiopsis thermalis]
Length = 198
Score = 105 bits (259), Expect = 6e-22
Identities = 70/204 (34%), Positives = 107/204 (52%), Gaps = 11/204 (5%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNG-LQMGEPGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L SG GTGKT+FS QFL+NG L EPG++V EE P + +N FGW
Sbjct: 2 HGGLPLGRTTLFSGTSGTGKTLFSVQFLYNGILFFDEPGVFVTFEESPSDIIKNAYSFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
++ K EEG ++DA S + E V D+ IE L+ AI A+RV +D
Sbjct: 62 NLPKLIEEGKLFILDA-------SPDPEGQEVIGNFDLSALIERLQYAIHKYKARRVAID 114
Query: 136 SVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGIIR 193
S+T ++ ++ R I +L L G T+I ++ + GVE V +
Sbjct: 115 SITAVFQQYEAASVVRREIFRLVARLKQIGVTTIITTERTEEYGAIASFGVEEFVADNVA 174
Query: 194 LDLDEIDGE-LKRSLIVWKMRGTS 216
+ + ++GE +R++ + K+RGT+
Sbjct: 175 IVRNVLEGERRRRTMEILKLRGTT 198
>gb|AAG01688.1|AF222603_1 (AF222603) KaiC [Chlorogloeopsis fritschii]
Length = 198
Score = 103 bits (254), Expect = 2e-21
Identities = 69/204 (33%), Positives = 109/204 (52%), Gaps = 11/204 (5%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L+SG GTGKT+FS QFL+NG+ +PG++V EE P + +N FGW
Sbjct: 2 HGGLPVGRTTLVSGTSGTGKTLFSLQFLYNGISYFDDPGVFVTFEESPNDIIKNAHIFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
D+++ EEG ++DA S + E + D+ IE L+ AIR AKRV +D
Sbjct: 62 DLQRLIEEGKLFILDA-------SPDPEGQDIVGNFDLSALIERLQYAIRKYKAKRVSID 114
Query: 136 SVTTLYINKPA--LARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGIIR 193
S+T ++ A + R I +L L T+I ++ + GVE V +
Sbjct: 115 SITAVFQQYEAVGVVRREIFRLVARLKQLNVTTIITTERTEEYGPVACYGVEEFVSDNVV 174
Query: 194 LDLDEIDGE-LKRSLIVWKMRGTS 216
+ + ++GE +R++ + K+RGT+
Sbjct: 175 IVRNVLEGERRRRTMEILKLRGTT 198
>gb|AAG01689.1|AF222604_1 (AF222604) KaiC [Geitlerinema PCC7105]
Length = 198
Score = 102 bits (253), Expect = 3e-21
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L+SG GTGKT+F+ QF++NG+ EPG++V EE P + +N FGW
Sbjct: 2 HGGLPRGRTTLVSGTSGTGKTLFAIQFIYNGITYFNEPGVFVTFEESPTDLIKNAQSFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
D++ +EG ++DA S + E V D+ IE ++ IR AKRV +D
Sbjct: 62 DLQGLVDEGKLFILDA-------SPDPEGQDVVGNFDLSALIERIQYGIRKYKAKRVSID 114
Query: 136 SVTTL---YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGII 192
SVT + Y P + R I + R L G T++ ++ GVE V +
Sbjct: 115 SVTAVFQQYDAAPVIRREIFRLVAR-LKQLGATTVMTTERIEEYGPVARFGVEEFVSDNV 173
Query: 193 RLDLDEIDGELKRSLI-VWKMRGTS 216
+ + ++GE +R I + K+RGT+
Sbjct: 174 VIVRNVLEGERRRRTIEILKLRGTT 198
>gb|AAG02175.1|AF239753_1 (AF239753) KaiC [Nostoc muscorum]
Length = 198
Score = 101 bits (250), Expect = 7e-21
Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 11/204 (5%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L+SG GTGKT+ S QFL+NG+ EPG++V EE P + +N FGW
Sbjct: 2 HGGLPIGRTTLISGTSGTGKTLLSLQFLYNGITYFDEPGVFVTFEESPSDIIKNAHIFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
++ + EEG ++DA S + E + D+ IE L+ AIR AKRV +D
Sbjct: 62 NLPRLLEEGKLFILDA-------SPDPEGQDIVGNFDLSALIERLQYAIRKYKAKRVSID 114
Query: 136 SVTTLYINKPAL--ARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGIIR 193
S+T ++ A+ R I +L L T++ ++ S GVE V +
Sbjct: 115 SITAVFQQYEAMGVVRREIFRLVARLKQLNVTTVITTERSEEYGPVASFGVEEFVSDNVV 174
Query: 194 LDLDEIDGELKRSLI-VWKMRGTS 216
+ + ++GE +R I + K+RGT+
Sbjct: 175 IVRNVLEGERRRRTIEILKLRGTT 198
>pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (strain K1)
>gi|5104407|dbj|BAA79722.1| (AP000060) 726aa long
hypothetical protein [Aeropyrum pernix]
Length = 726
Score = 101 bits (248), Expect = 1e-20
Identities = 59/171 (34%), Positives = 91/171 (52%), Gaps = 4/171 (2%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
R++TG+ G D ++ GGIP V + G PGTGKT+FS F + G++ G+ IYV EE
Sbjct: 6 RLRTGVEGFDPLVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVREGDKVIYVTTEESR 65
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
V + A FG D+ + +EG ++DA E V L + + +E R
Sbjct: 66 ESVLKQAAMFGMDLGRAVDEGRAIVIDALLKSRSDEWSLEDVSVESL--VNKVLEAKRAL 123
Query: 124 IRDINAKRVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISV 174
R+VVDS++ +++KPA+AR +KRVL T++ VSQ ++
Sbjct: 124 --GYGRARLVVDSMSAFWLDKPAMARKYSYMVKRVLYRWDFTTLLVSQYAI 172
>gb|AAG01684.1|AF222600_1 (AF222600) KaiC [Scytonema PCC7110]
Length = 198
Score = 97.9 bits (240), Expect = 1e-19
Identities = 67/204 (32%), Positives = 107/204 (51%), Gaps = 11/204 (5%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L+SG GTGKT+FS QFL+NG+ E G++V EE P + +N FGW
Sbjct: 2 HGGLPVGRTTLVSGTSGTGKTLFSLQFLYNGISYFDEAGVFVTFEESPSDIIKNACIFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
++++ ++G ++DA S + E V D+ IE L+ AIR AKRV +D
Sbjct: 62 NLQRLIDDGKLFILDA-------SPDPEGQDVVGNFDLSALIERLQYAIRKYKAKRVSID 114
Query: 136 SVTTLYINKPA--LARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGIIR 193
S+T ++ A + R I +L L T++ ++ + GVE V +
Sbjct: 115 SITAVFQQYEAVGVVRREIFRLVARLKQLSVTTLITTERTDEYGPVACFGVEEFVSDNVV 174
Query: 194 LDLDEIDGELKRSLI-VWKMRGTS 216
+ + ++GE +R I + K+RGT+
Sbjct: 175 IVRNVLEGERRRRTIEILKLRGTT 198
>gb|AAG02177.1|AF239755_1 (AF239755) KaiC [Gloeobacter violaceus]
Length = 198
Score = 97.9 bits (240), Expect = 1e-19
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 11/204 (5%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L+SG GTGKT+FS QFL+NG+ E G++V EE P + +N FGW
Sbjct: 2 HGGLPVGRTTLVSGTSGTGKTLFSLQFLYNGISYFDEAGVFVTFEESPSDIIKNACIFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
++++ ++G ++DA S + E V D+ IE L+ AIR AKRV +D
Sbjct: 62 NLQRLIDDGKLFILDA-------SPDPEGQDVVGNFDLSALIERLQYAIRKYKAKRVSID 114
Query: 136 SVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGIIR 193
S+T ++ + R I +L L T++ ++ + GVE V +
Sbjct: 115 SITAVFQQYETVGVVRREIFRLVARLKQLSVTTLITTERTDEYGPVACVGVEEFVSDNVV 174
Query: 194 LDLDEIDGELKRSLI-VWKMRGTS 216
+ + ++GE +R I + K+RGT+
Sbjct: 175 IVRNVLEGERRRRTIEILKLRGTT 198
>pir||E71133 hypothetical protein PH0833 - Pyrococcus horikoshii
>gi|3257244|dbj|BAA29927.1| (AP000003) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 97.5 bits (239), Expect = 1e-19
Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 6 KTGIPGMDD-ILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEEHP 63
K GI D IL GG P +++L+ G PGTGKTI S +L+NG + GE G+Y++L E
Sbjct: 33 KFGIEYFDKYILRGGFPNGSMILIVGEPGTGKTILSATYLYNGAKKFGEKGMYISLAETK 92
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
+ + M Q G D + E G+F +D T SK+ + + IE+L
Sbjct: 93 WEFYKGMKQLGMDFEELENNGLFKFIDLVTV----SKD----------AVEKEIELLMSE 138
Query: 124 IRDINAKRVVVDSVTTLYINKPALARSIILQ--LKRVLAGTGCTSIFVSQISVGERGFGG 181
I + KR+V+DS++ A I L L R + T++ +++ +G + G
Sbjct: 139 ISSFHPKRIVIDSISVFTQLLGAEKTRIFLHTILGRFIKANDATALLIAEKPIGSKTIGY 198
Query: 182 PGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
E VDG+I L +R + + KMR + + IT GI
Sbjct: 199 GVEEFVVDGVIILKYKSFGEVTRRVMEIPKMRRRKIERAEYEYVITKNGI 248
Score = 78.8 bits (191), Expect = 6e-14
Identities = 56/235 (23%), Positives = 114/235 (47%), Gaps = 19/235 (8%)
Query: 2 TRRIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEE 61
+ +I TGI +D++L GGI + + VL+ G GTGKT FS F G Y+ EE
Sbjct: 265 SEKITTGIERLDEMLDGGIYKGSSVLIVGMTGTGKTTFSLHFAIANALQGRKVAYITFEE 324
Query: 62 HPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLR 121
Q+ ++ +G + + +G++ + ++ T + +I++ +
Sbjct: 325 PIDQIIRSAKNYGMPIEEV---------------LGRNLKIFAWVPESKTPVHTYIKI-K 368
Query: 122 QAIRDINAKRVVVDSVTTL--YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGF 179
+ I + + +++DS+T L ++++ L + ++ L+ + T+ F
Sbjct: 369 EIIEEFKPEALIIDSLTALREHLDEKELTK-MLRYLQLLTKEKRITTYFTFTEEAKFDVV 427
Query: 180 GGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVY 234
G VD II L + + ++++ L + K RG++HS + H +EIT++G+ +Y
Sbjct: 428 PFTGASTMVDVIILLKYEIENEKIEKRLAIIKARGSNHSRKIHKYEITNRGVEIY 482
>pir||E75070 recombinase related PAB0642 - Pyrococcus abyssi (strain Orsay)
>gi|5458378|emb|CAB49866.1| (AJ248286) RECOMBINASE
related [Pyrococcus abyssi]
Length = 240
Score = 97.5 bits (239), Expect = 1e-19
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 15/234 (6%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
RI TG+ G+D+++ GG+ V L++G PG+GKT F FL G + GE YV+L P
Sbjct: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLEGARKGEKVAYVSLIHKP 66
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
+V ++M +F + Y + + D +S + R + +R+
Sbjct: 67 EEVVKDMLRFDPSIYVYVNKWKLMLYDLGPVLWRESTRVPTW--------RSVLSRIREI 118
Query: 124 IRDINAKRVVVDSVTTL--YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGG 181
+ D R+V+D +T + + P R + + R L G T+ ++++ ++
Sbjct: 119 VEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLEDLGVTAYLIAEMIEMDK---- 174
Query: 182 PGVEHG-VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVY 234
EH V GII L G + R++ ++KMRGT H + TDKG+VVY
Sbjct: 175 YSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKLLKFTDKGLVVY 228
>pir||D69012 conserved hypothetical protein MTH1094 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622195|gb|AAB85583.1| (AE000880) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 470
Score = 96.7 bits (237), Expect = 2e-19
Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 22/236 (9%)
Query: 7 TGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQM-GEPGIYVALEEHPVQ 65
TGI G+D I GG P L+ GGPGTGKT + +FL G + GEPG+ V+ +E
Sbjct: 11 TGIKGLDMITEGGFPRGRNTLIYGGPGTGKTFIAMEFLLKGASVYGEPGVMVSFDEAMEN 70
Query: 66 VRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIR 125
+ +N + + +EG+ + D A G + Y + L +R L AIR
Sbjct: 71 LIENFRSSDRLLERLIDEGLLFIED---ASRGMDPDAGSYSLEAL-KLR-----LEDAIR 121
Query: 126 DINAKRVVVDSVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPG 183
A+RVV+D V L+ + + + +L R L G G TS+F S G+ G G P
Sbjct: 122 RTGARRVVLDKVDNLFDGTERQGMIGFELRELIRWLNGMGVTSVFTS----GDYG-GSPT 176
Query: 184 ---VEHGVDGIIRLDLDEIDGEL-KRSLIVWKMRGTSHSMRRHPFEITDKGIVVYP 235
E+ D +I L +G++ R L + K RG+ H + R+PF IT +G ++P
Sbjct: 177 HRLEEYISDCVIHL-THTFEGQVGTRHLRIVKYRGSGHGLNRYPFIITRRGASIFP 231
Score = 77.6 bits (188), Expect = 1e-13
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 29/239 (12%)
Query: 5 IKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHPV 64
+ TGIP +D++L GG+ + VL+SG G GKT +F + + GE ++ + EE
Sbjct: 246 VSTGIPTLDEMLGGGVYRGSAVLVSGTTGAGKTSLLSKFAYESCRRGERCLFFSNEEPAD 305
Query: 65 QVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAI 124
Q+ +NM G + ++ + + D T+ + + ++ I
Sbjct: 306 QIVRNMESIGIKLGEFLGDKLLIHSDRPTS----------------LGLEAHLTYMQDLI 349
Query: 125 RDINAKRVVVDSVTTLY------INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG 178
D N V+VD VT L + A+ + ++L L G G TSIF I+
Sbjct: 350 MDFNPDSVLVDPVTGLAGAGGSPETRNENAKHLFIRLTDFLKGRGITSIFSYLIA---SP 406
Query: 179 FGGPGVE----HGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVV 233
F E +D I L+ +GE +RSL + K RG +HS TD+GI++
Sbjct: 407 FTATTTELKLSSLIDTWIVLESIRANGEYRRSLRILKSRGMNHSSSVAEVRFTDRGILI 465
>pir||D71095 hypothetical protein PH1025 - Pyrococcus horikoshii
>gi|3257439|dbj|BAA30122.1| (AP000004) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 95.6 bits (234), Expect = 5e-19
Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
RI TG+ G+D+++ GG+ V L++G PG+GKT F QFL G + GE Y++L P
Sbjct: 7 RISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMQFLLEGARRGEKVAYISLIHKP 66
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
+V ++M +F V Y + D +S + + R + +R+
Sbjct: 67 EEVVRDMVRFDPSVYVYVNNWRLILYDLGPILWRESTKVPTW--------RSVLSRIREI 118
Query: 124 IRDINAKRVVVDSVTTL--YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGG 181
+ R+V+D +T + + P R + + R L G T+ ++++ ++
Sbjct: 119 TENEKITRLVIDPLTAIDFPLQDPVEKRVELAKFVRSLENLGVTTYLIAEMVELDK---- 174
Query: 182 PGVEHG-VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVY 234
EH V GII L +G + R++ ++KMRGT H + TD+G+VVY
Sbjct: 175 YSEEHYLVSGIIMLHYFMHEGRMIRAIQIFKMRGTKHDPNLKLLKFTDQGLVVY 228
>gi|11497963 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430039|pir||G69293 conserved hypothetical protein
AF0351 - Archaeoglobus fulgidus
>gi|2650282|gb|AAB90883.1| (AE001080) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 226
Score = 95.2 bits (233), Expect = 7e-19
Identities = 73/237 (30%), Positives = 118/237 (48%), Gaps = 21/237 (8%)
Query: 5 IKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHPV 64
+KTGI G+D IL GGIPE ++V + G GTGKT F++ GL+ GE + ++ +E
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDEDEE 61
Query: 65 QVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAI 124
+ + G D+ + ++ ++A K EK + DL +I +
Sbjct: 62 SIIGDAKSVGMDLTAFGDKVHIVRLEASEV----KKSLEK-LESDLPEI----------V 106
Query: 125 RDINAKRVVVDSVTTL-YINKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPG 183
R + R++VDS++ L + A S++ +++L G T+I S+ + G
Sbjct: 107 RSLGVSRMLVDSISVLETLFDDAGRYSMLAAFRKMLKENGITAIITSEADKYQPNTSKYG 166
Query: 184 V-EHGVDGIIRLDL---DEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVYPD 236
+ E+ DG+I L + E+D E L V KMR HS + P+ ITD GIVVY +
Sbjct: 167 ILEYICDGMISLKVVRKSELD-EPTLGLEVVKMRRVKHSRKPKPYIITDSGIVVYEE 222
>gb|AAG01685.1|AF222601_1 (AF222601) KaiC [Xenococcus PCC7305]
>gi|9931432|gb|AAG02176.1|AF239754_1 (AF239754) KaiC
[Calothrix parietina]
Length = 198
Score = 95.2 bits (233), Expect = 7e-19
Identities = 67/204 (32%), Positives = 105/204 (50%), Gaps = 11/204 (5%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGE-PGIYVALEEHPVQVRQNMAQFGW 75
HGG+PE L+SG GTGKT+ + QFL++G++ + PG++V EE P V +N FGW
Sbjct: 2 HGGLPEGRTTLVSGTSGTGKTLLALQFLYHGIKYFDYPGVFVTFEESPQDVIKNAYSFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
D++ E G ++DA S + E V D+ IE ++ AI AK V +D
Sbjct: 62 DLQNLVERGKLFILDA-------SPDPEGQEVVGNFDLSALIERIQYAINKYKAKLVSID 114
Query: 136 SVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGVEHGVDGIIR 193
SVT ++ + ++ R I +L L TSI ++ GVE V +
Sbjct: 115 SVTAVFQQYDAASVVRREIFRLVARLKQLKVTSIMTTERIEEYGPVARFGVEEFVSDNVV 174
Query: 194 LDLDEIDGELKRSLI-VWKMRGTS 216
+ + ++GE +R I + K+RGT+
Sbjct: 175 IVRNVLEGERRRRTIEILKLRGTT 198
>gi|11498064 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483012|pir||D69306 conserved hypothetical protein
AF0452 - Archaeoglobus fulgidus
>gi|2650173|gb|AAB90781.1| (AE001073) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 443
Score = 93.6 bits (229), Expect = 2e-18
Identities = 69/226 (30%), Positives = 114/226 (49%), Gaps = 19/226 (8%)
Query: 5 IKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-QMGEPGIYVALEEHP 63
+KTGI G DDI GG ++L++G PG+GKT F +FL+ G + GE G+Y+++ E
Sbjct: 4 VKTGIEGFDDIF-GGFYRGQIILIAGNPGSGKTTFCAKFLYEGARRFGENGLYISIGESK 62
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQA 123
+ + M + G D K E+ G F V+ S++ + +LT + A
Sbjct: 63 EEFYEYMKKLGMDFEKLEKTGSFKYVEMLAP---TSEDALMQLSRELT---------KNA 110
Query: 124 IRDINAKRVVVDSVTTLYINKPALARSIILQ-LKRVLAGTGCTSIFVSQISVGERGFGGP 182
+ ++ A R+V+DS++ + P AR+I+ LK + + ++ +GE G
Sbjct: 111 L-ELKATRIVIDSISPILSMNPETARAILHNALKTISRELKSVVLMTEEMPIGETRIGQG 169
Query: 183 GVEHGVDGII--RLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEI 226
E VDG+I RL++ E G R++ V K+RG + FEI
Sbjct: 170 IEEFVVDGVIVLRLEVPEA-GAPVRTMSVLKLRGKPLDRAVYNFEI 214
>gb|AAG20092.1| (AE005088) circadian regulator; KaiC [Halobacterium sp. NRC-1]
Length = 218
Score = 91.7 bits (224), Expect = 8e-18
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 15 ILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHPVQVRQNMAQFG 74
++ GG+PER++++ G GTGKT F QFL L GE +++ LEE +V Q+ + G
Sbjct: 1 MVQGGVPERSLLVAVGEAGTGKTTFGLQFLHEALSNGERAVFITLEESRGRVIQSADEKG 60
Query: 75 WDVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVV 134
W ++ + G A+VD + S LT IR L + + + A R+V+
Sbjct: 61 WAFSEHADRGNLAVVDIDPIEMANS----------LTSIR---NELPRLVEEFGASRLVL 107
Query: 135 DSVTTLYI--NKPALARSIILQLKRVLAGTGCTSIFVSQISVGERGFGGPGV-EHGVDGI 191
DSV+ L + + + R+ I L G T++ S+ S GV E+ D +
Sbjct: 108 DSVSLLEMMYDDQSTRRTEIYDFTTALKEAGVTTMLTSEASEDNPFASRYGVIEYLTDAV 167
Query: 192 I--RLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVVY 234
+ R E E + ++ + K+R +HS P+EIT +GI VY
Sbjct: 168 VVLRYIRPEDFRETRLAVEIQKIRDANHSRETKPYEITHEGISVY 212
>pir||A71241 hypothetical protein PH0187 - Pyrococcus horikoshii
>gi|3256573|dbj|BAA29256.1| (AP000001) 251aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 251
Score = 91.7 bits (224), Expect = 8e-18
Identities = 69/237 (29%), Positives = 126/237 (53%), Gaps = 13/237 (5%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
R+ TGI +D++++GGIP +VVL+ G P GK+ F QF++N +++G P I V ++
Sbjct: 15 RVPTGI--IDELINGGIPRGSVVLVIGDPKAGKSTFLTQFVYNQIKLGVPVIGVLVDISK 72
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKE--YEKYIVHDLTDIREFIEVLR 121
+ N +FGW+ Y ++ + ++DA+T + K+ + +E+ IV DL++ ++ ++
Sbjct: 73 YEFISNALEFGWEFTPYLDDKII-LLDAYTQRLRKAPKFSFEETIVGDLSNTVNLLDAIK 131
Query: 122 ----QAIRDINAKRVV--VDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVG 175
+ + + VV + S+T ++ L+ R A ++V +++ G
Sbjct: 132 DTTLKILSSVKTDGVVGFISSMTPIFFETSKKEIYKFLEDLREFAHRN-RQVWVLEMNSG 190
Query: 176 -ERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
E + V+ VDGII L L E LKR L ++ MR T+H + + IT +GI
Sbjct: 191 IEEPYVETMVKAIVDGIIELRLVEEGKTLKRYLRIYGMRRTAHRLDWIEYSITSQGI 247
>gb|AAG01683.1|AF222599_1 (AF222599) KaiC [Chroococcidiopsis PCC6712]
Length = 198
Score = 90.9 bits (222), Expect = 1e-17
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGE-PGIYVALEEHPVQVRQNMAQFGW 75
HGG+P L+SG GTGKT+ + QFL++G++ + PG++V EE P + N FGW
Sbjct: 2 HGGLPIGRTTLVSGTSGTGKTLLAIQFLYHGIKFFDYPGVFVTFEESPKDIITNARSFGW 61
Query: 76 DVRKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVD 135
D++ ++G ++DA S + E V D IE ++ AI AK V +D
Sbjct: 62 DLQSLIDQGKMFILDA-------SPDPEGQEVVGNFDFSALIERIQYAINKYKAKLVSID 114
Query: 136 SVTTLY--INKPALARSIILQLKRVLAGTGCTSIFVSQISVGERG-FGGPGVEHGVDGII 192
SVT ++ + ++ R I +L L TSI ++ V E G GVE V +
Sbjct: 115 SVTAIFQQYDAASVVRREIFRLVARLKLLNVTSIMTTE-RVEEYGPIARFGVEEFVSDNV 173
Query: 193 RLDLDEIDGELKRSLI-VWKMRGTS 216
+ + ++GE +R I + K+RGT+
Sbjct: 174 IIIRNVLEGERRRRTIEILKLRGTT 198
>pir||G75205 hypothetical protein PAB0113 - Pyrococcus abyssi (strain Orsay)
>gi|5457603|emb|CAB49094.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 251
Score = 88.9 bits (217), Expect = 5e-17
Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
Query: 4 RIKTGIPGMDDILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHP 63
RI TGI +DD++ GGIP+ +V+L+ G P GK+ F QF++N +++G P I V ++
Sbjct: 15 RIPTGI--IDDLISGGIPKGSVILVIGDPKAGKSTFLTQFVYNQVKVGTPVIGVLVDISK 72
Query: 64 VQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKE--YEKYIVHDLTDIREFIEVLR 121
+ N FGW+ Y ++ + ++DA+T + K+ + +E IV DL++ ++ ++
Sbjct: 73 YEFISNALDFGWEFTPYLDDRII-LLDAYTQRLRKTPKFSFEDSIVGDLSNTINLLDAIK 131
Query: 122 QAIRDI----NAKRVV--VDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVSQISVG 175
I + +V V S+T ++ L+ R A +++ +++ G
Sbjct: 132 DTTLKILSTTKSDGIVGFVSSMTPIFFETSKKEIYKFLEDLREFAHRN-RQVWILEMNSG 190
Query: 176 -ERGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGI 231
E + V+ VDGII L L E LKR + ++ MR T+H + + IT GI
Sbjct: 191 IEEPYVETMVKAIVDGIIELKLREEGKTLKRYMRIYGMRRTAHKLDWIEYTITSSGI 247
>pir||F69178 conserved hypothetical protein MTH593 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621672|gb|AAB85099.1| (AE000841) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 233
Score = 84.7 bits (206), Expect = 1e-15
Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 34/248 (13%)
Query: 1 MTRRIKTGIPGMDDILHGG-IPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVAL 59
M RI +GI G+D+++ G IPE V ++ G P GK+IF+ F G +M EP +Y++
Sbjct: 1 MIVRIPSGIRGLDELMGGASIPENTVTMVYGPPKVGKSIFAYGFAAGGAEMDEPCLYISA 60
Query: 60 EEHPVQVRQNMAQFGWDVRKYEEEGMFAMVDAFTAGIGKSKE----YEKYIVHDLTDIRE 115
+ +++NMA G D Y ++ + ++DA ++ G S + Y VH+ TDI
Sbjct: 61 DYGLSDLKRNMAVLGMDPESYLQKELLYVIDAISSISGPSGDEGSTYFSSSVHNPTDIMV 120
Query: 116 FIEVLRQAIRDINAK----RVVVDSVTTL--YINKPALARSIILQLKRVLAGTGCTSIFV 169
+ V AIR+I + R V+DS+TTL + ++ + R + + R+ G +
Sbjct: 121 KLGV---AIRNITNRYSMFRSVLDSLTTLMAFNDEMLIVRVLTAYIMRIKEAGGTAVVTY 177
Query: 170 SQISVGERGFGGPGVE----HGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFE 225
++ G P VE VD II LD E L V M GT P+
Sbjct: 178 TE------GSADPKVETMLKAVVDNIIHLDGSE--------LTVEAMVGTGRVSA--PYT 221
Query: 226 ITDKGIVV 233
I D GI V
Sbjct: 222 IDDSGIKV 229
>gi|11498401 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483055|pir||C69349 conserved hypothetical protein
AF0795 - Archaeoglobus fulgidus
>gi|2649811|gb|AAB90443.1| (AE001049) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 289
Score = 74.5 bits (180), Expect = 1e-12
Identities = 71/254 (27%), Positives = 107/254 (41%), Gaps = 45/254 (17%)
Query: 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLQMGEPGIYVALEEHPVQVRQNMAQFGWDV 77
GGIP V+ ++G P TGK++ ++QF G +YV +E + A F +
Sbjct: 46 GGIPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVE--------SPANFLYTA 97
Query: 78 RKYEEEGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREF-------IEVLRQAIRDINAK 130
K E M G+ +K +V D ++ E +E + AI++
Sbjct: 98 MKERSEAM---------GVDFTKVESNVVVIDASESDELRENPKALMETMAYAIKEKKVT 148
Query: 131 RVVVDSVTTLYINKPALARSIILQLKRVLAGTGCTSIFVS-----QISVGERGFGGPGVE 185
++DS+T LY +K +AR I+ Q + T IFVS Q S GG V
Sbjct: 149 NTIIDSITGLYEHKEMMARQIVRQFFNFMKKYRQTGIFVSQKRSAQASESAEAAGGLAVA 208
Query: 186 HGVDGIIRLDLDEID------------GELKRSLIVWKMRGTSHSMRRHPFEITDKG--- 230
H VDG I LD I+ G + R++ + R H R FEI++ G
Sbjct: 209 HIVDGTIVLDKKLIESRWDVSLYGLPLGSILRTIRIDGCRIAPHDSRVWVFEISEIGTIE 268
Query: 231 -IVVYPDRVLKRGK 243
I + + KRGK
Sbjct: 269 IIAPLSEYIKKRGK 282
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92998913
Number of Sequences: 2977
Number of extensions: 3963169
Number of successful extensions: 13770
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13682
Number of HSP's gapped (non-prelim): 46
length of query: 247
length of database: 189,106,746
effective HSP length: 52
effective length of query: 195
effective length of database: 157,985,422
effective search space: 30807157290
effective search space used: 30807157290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)