BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2186 (PAB2186) DE:Hypothetical protein
         (558 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75216 hypothetical protein PAB2186 - Pyrococcus abyssi (st...  1072  0.0
pir||F71452 hypothetical protein PH0277 - Pyrococcus horikoshii ...   673  0.0

>pir||A75216 hypothetical protein PAB2186 - Pyrococcus abyssi (strain Orsay)
           >gi|5457685|emb|CAB49176.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 558
           
 Score = 1072 bits (2741), Expect = 0.0
 Identities = 558/558 (100%), Positives = 558/558 (100%)

Query: 1   MELPSISKNAESRVCLSAEELLNFLTDSLKAKDVKGLHVKIAGKDEKDSYVIELLVDKKR 60
           MELPSISKNAESRVCLSAEELLNFLTDSLKAKDVKGLHVKIAGKDEKDSYVIELLVDKKR
Sbjct: 1   MELPSISKNAESRVCLSAEELLNFLTDSLKAKDVKGLHVKIAGKDEKDSYVIELLVDKKR 60

Query: 61  ILAAKCVSESRKEIMYGDEAIRTLARIAEIPVIVTVQPLDETSFRLALANNIEIYSKTPA 120
           ILAAKCVSESRKEIMYGDEAIRTLARIAEIPVIVTVQPLDETSFRLALANNIEIYSKTPA
Sbjct: 61  ILAAKCVSESRKEIMYGDEAIRTLARIAEIPVIVTVQPLDETSFRLALANNIEIYSKTPA 120

Query: 121 IPLSEVFKRQAEETIEEAIEEAKVEREREIREIEEETTKVIEEKKEEAEIPEEFKIEIMG 180
           IPLSEVFKRQAEETIEEAIEEAKVEREREIREIEEETTKVIEEKKEEAEIPEEFKIEIMG
Sbjct: 121 IPLSEVFKRQAEETIEEAIEEAKVEREREIREIEEETTKVIEEKKEEAEIPEEFKIEIMG 180

Query: 181 NVENKETIENALREYVNLTKSEIAKYLNGAHLKSGRISAEIGTGTIGIVAEFNVVSERGD 240
           NVENKETIENALREYVNLTKSEIAKYLNGAHLKSGRISAEIGTGTIGIVAEFNVVSERGD
Sbjct: 181 NVENKETIENALREYVNLTKSEIAKYLNGAHLKSGRISAEIGTGTIGIVAEFNVVSERGD 240

Query: 241 PEIIKRKSLFLINKHLPKIMRKINLKPIIKDIKVNAIVGSKISSMEEKEREDTSLWRLTK 300
           PEIIKRKSLFLINKHLPKIMRKINLKPIIKDIKVNAIVGSKISSMEEKEREDTSLWRLTK
Sbjct: 241 PEIIKRKSLFLINKHLPKIMRKINLKPIIKDIKVNAIVGSKISSMEEKEREDTSLWRLTK 300

Query: 301 PPTHQLAQNLYLTVDPKFKPYFTGFARTLLREIQDSKIKVDKLEIEIYGGVKEFEINVKL 360
           PPTHQLAQNLYLTVDPKFKPYFTGFARTLLREIQDSKIKVDKLEIEIYGGVKEFEINVKL
Sbjct: 301 PPTHQLAQNLYLTVDPKFKPYFTGFARTLLREIQDSKIKVDKLEIEIYGGVKEFEINVKL 360

Query: 361 QGTANDLDEPRVQAIITRLAKRHASELSKILNKYVWVNSVTVKLGKSELGLSAKASEILK 420
           QGTANDLDEPRVQAIITRLAKRHASELSKILNKYVWVNSVTVKLGKSELGLSAKASEILK
Sbjct: 361 QGTANDLDEPRVQAIITRLAKRHASELSKILNKYVWVNSVTVKLGKSELGLSAKASEILK 420

Query: 421 RKKEIEEEVERMLKEAKIEELNYLLEDKKKEIDRIIKPRIDSAIKELKEKLKEELKALPN 480
           RKKEIEEEVERMLKEAKIEELNYLLEDKKKEIDRIIKPRIDSAIKELKEKLKEELKALPN
Sbjct: 421 RKKEIEEEVERMLKEAKIEELNYLLEDKKKEIDRIIKPRIDSAIKELKEKLKEELKALPN 480

Query: 481 AEFRWLKANYEFRDNIVELSIEASLAKREEEGLFGVLSTVSDEDIRKSAIDVILREIKNA 540
           AEFRWLKANYEFRDNIVELSIEASLAKREEEGLFGVLSTVSDEDIRKSAIDVILREIKNA
Sbjct: 481 AEFRWLKANYEFRDNIVELSIEASLAKREEEGLFGVLSTVSDEDIRKSAIDVILREIKNA 540

Query: 541 ERENNIQIRLKRLDIAVR 558
           ERENNIQIRLKRLDIAVR
Sbjct: 541 ERENNIQIRLKRLDIAVR 558


>pir||F71452 hypothetical protein PH0277 - Pyrococcus horikoshii
           >gi|3256666|dbj|BAA29349.1| (AP000001) 560aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 560
           
 Score =  673 bits (1718), Expect = 0.0
 Identities = 323/560 (57%), Positives = 451/560 (79%), Gaps = 6/560 (1%)

Query: 1   MELPSISKNAESRVCLSAEELLNFLTDSLKAKDVKGLHVKIAGKDEKDSYVIELLVDKKR 60
           ME+  +    E+ VCLS EE+LN + ++++  +++G +V+I GKDE   Y+I++++DKKR
Sbjct: 5   MEIQGLQPKIENEVCLSGEEVLNLINENIRDPNIRGAYVRIFGKDESGQYIIDMIMDKKR 64

Query: 61  ILAAKCVSESRKEIMYGDEAIRTLARIAEIPVIVTVQPLDETSFRLALANNIEIYSKTPA 120
           ILA +C   ++KEI++G+EA++    ++++P++ T+ PLD  SF++ LA NIE++SKTPA
Sbjct: 65  ILAIECTILNKKEIIHGEEALKKFVELSDLPLVATLYPLDNESFKMVLAKNIEVFSKTPA 124

Query: 121 IPLSEVFKRQAEETIEEAIEEAKVEREREIREIEEETTKVIEEKKEEAEIPEEFKIEIMG 180
           IPL E+FKR+A++TIE AI EA+  RE+EI+EIE ET K+ EEK  E +IPEE  I + G
Sbjct: 125 IPLQEIFKREAKKTIEGAITEAREAREKEIKEIERETEKIKEEK--EIKIPEEITINVKG 182

Query: 181 NVENKETIENALREYVNLTKSEIAKYLNGAHLKSGRISAEIGTGTIGIVAEFNVVSERGD 240
           + E K  ++ AL  Y+NL K +I + L GA L++ RI+AEIG GT+ ++ EF + +  G+
Sbjct: 183 DSEGK--VKEALMGYINLLKGDINRQLKGAQLRATRINAEIGKGTVSLIGEFYITANDGN 240

Query: 241 PEIIKRKSLFLINKHLPKIMRKINLKPIIKDIKVNAIVGSKISSMEEKEREDTSLWRLTK 300
           PE++KR++LFLINKH+PKIM+  NLKPIIKD+KVN +VG  ++SMEE+EREDTSLW+LTK
Sbjct: 241 PEVLKRRALFLINKHIPKIMKSTNLKPIIKDLKVNVVVGEVVTSMEEREREDTSLWKLTK 300

Query: 301 PPTHQLAQNLYLTVDPKFKPYFTGFARTLLREIQDSKIKVDKLEIEIYGGVKEFEINVKL 360
           PPTH+LA NL+LT+DPKFK YFTGFARTLL+EI+D  I VD L++EI GGVKEFEIN+KL
Sbjct: 301 PPTHELAPNLHLTIDPKFKQYFTGFARTLLKEIEDEGIIVDNLDLEILGGVKEFEINIKL 360

Query: 361 QGTANDLDEPRVQAIITRLAKRHASELSKILNKYVWVNSVTVKLGK-SELGLSAKASEIL 419
           +G + +LDEP+++AII+ LAKRHASELSKI+ KY+W+N+VTV+L + +   LSAKA+EIL
Sbjct: 361 EGKSKELDEPKLRAIISSLAKRHASELSKIVGKYIWINNVTVELKQPTAAELSAKAAEIL 420

Query: 420 KRKKEIEEEVERMLKEAKIEELNYLLEDKKKEIDR-IIKPRIDSAIKELKEKLKEELKAL 478
           K+KKEIE+EVE+MLKEA IEEL+YLLEDKK+EI++ +IKPRIDSA++ L++KL+E LK++
Sbjct: 421 KKKKEIEKEVEKMLKEAGIEELSYLLEDKKREIEKTVIKPRIDSAMETLRKKLQENLKSI 480

Query: 479 PNAEFRWLKANYEFRDNIVELSIEASLAKREEEGLFGVLSTVSDEDIRKSAIDVILREIK 538
           PNA  RW+  N+E  +N +E+S++ASLAK E EGLFGVLST S+E+I++ AID I+R I+
Sbjct: 481 PNANLRWINVNHEPHENSIEISVKASLAKVESEGLFGVLSTFSEEEIKRKAIDTIVRTIR 540

Query: 539 NAERENNIQIRLKRLDIAVR 558
             E EN IQI+LKRLDI+VR
Sbjct: 541 EVEEENQIQIKLKRLDISVR 560


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.133    0.348 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185282629
Number of Sequences: 2977
Number of extensions: 7795744
Number of successful extensions: 58312
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58304
Number of HSP's gapped (non-prelim): 2
length of query: 558
length of database: 189,106,746
effective HSP length: 66
effective length of query: 492
effective length of database: 149,606,604
effective search space: 73606449168
effective search space used: 73606449168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 167 (69.5 bits)