BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2190 252540 252172 -123 !not a gene!
         (123 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71451 hypothetical protein PH0269 - Pyrococcus horikoshii ...   111  2e-24

>pir||F71451 hypothetical protein PH0269 - Pyrococcus horikoshii
           >gi|3256658|dbj|BAA29341.1| (AP000001) 121aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 121
           
 Score =  111 bits (275), Expect = 2e-24
 Identities = 64/107 (59%), Positives = 68/107 (62%)

Query: 16  TYSTVSGNSIPVLLKKTVNSSNSSRAKPKTAKLSFPPENATETGNLNFSAVFLMNSFASL 75
           TYSTVSGNSIPVLLKKTV   NSS A+PKTAKLSFPPENAT TG+LNFSA  L+   ASL
Sbjct: 14  TYSTVSGNSIPVLLKKTVKLLNSSIARPKTAKLSFPPENATATGSLNFSATLLIKFLASL 73

Query: 76  TFSSKAWEFALITSSXXXXXXXXXXXXXXXXXXXXMPVPRELGFINS 122
           TF S + EFALITS                      PVP   G INS
Sbjct: 74  TFFSNSAEFALITSLMVAFLPFNRFPLPLLFLFILTPVPLAWGLINS 120


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.311    0.123    0.336 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34457629
Number of Sequences: 2977
Number of extensions: 1008294
Number of successful extensions: 2687
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2686
Number of HSP's gapped (non-prelim): 1
length of query: 123
length of database: 189,106,746
effective HSP length: 62
effective length of query: 61
effective length of database: 152,000,552
effective search space: 9272033672
effective search space used: 9272033672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 159 (66.3 bits)