BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2196 (PAB2196) DE:Hypothetical protein
(171 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75213 hypothetical protein PAB2196 - Pyrococcus abyssi (st... 337 4e-92
pir||H71249 hypothetical protein PH0255 - Pyrococcus horikoshii ... 272 1e-72
pir||A72302 conserved hypothetical protein - Thermotoga maritima... 105 3e-22
gb|AAK41499.1| Conserved hypothetical protein [Sulfolobus solfat... 102 3e-21
pir||H70312 hypothetical protein aq_134 - Aquifex aeolicus >gi|2... 74 1e-12
>pir||G75213 hypothetical protein PAB2196 - Pyrococcus abyssi (strain Orsay)
>gi|5457667|emb|CAB49158.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 171
Score = 337 bits (856), Expect = 4e-92
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MIQIAIAGSSDEKPFEKAVEKAKKFARALPTNVILLTGGRGGIMRIVSEEFRKRGGIVVG 60
MIQIAIAGSSDEKPFEKAVEKAKKFARALPTNVILLTGGRGGIMRIVSEEFRKRGGIVVG
Sbjct: 1 MIQIAIAGSSDEKPFEKAVEKAKKFARALPTNVILLTGGRGGIMRIVSEEFRKRGGIVVG 60
Query: 61 ILPYSDEGNEFNTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLGVPVI 120
ILPYSDEGNEFNTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLGVPVI
Sbjct: 61 ILPYSDEGNEFNTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLGVPVI 120
Query: 121 VLTDTGYPSDKLEMLAQDGYFDHKKILRVIFTEDPDEAARLAVEIGGRKDD 171
VLTDTGYPSDKLEMLAQDGYFDHKKILRVIFTEDPDEAARLAVEIGGRKDD
Sbjct: 121 VLTDTGYPSDKLEMLAQDGYFDHKKILRVIFTEDPDEAARLAVEIGGRKDD 171
>pir||H71249 hypothetical protein PH0255 - Pyrococcus horikoshii
>gi|3256644|dbj|BAA29327.1| (AP000001) 175aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 175
Score = 272 bits (689), Expect = 1e-72
Identities = 130/171 (76%), Positives = 154/171 (90%)
Query: 1 MIQIAIAGSSDEKPFEKAVEKAKKFARALPTNVILLTGGRGGIMRIVSEEFRKRGGIVVG 60
MIQIAIAGSSDEKP E AV K K+F +ALP++VIL+TGGRGGIM + SEEFRK+GGIVVG
Sbjct: 1 MIQIAIAGSSDEKPLEVAVRKTKEFIKALPSDVILMTGGRGGIMEVASEEFRKKGGIVVG 60
Query: 61 ILPYSDEGNEFNTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLGVPVI 120
ILPYSD GN FNT+RVKTG+NPVERSG L+ESADVLVVLGGGVGTMIEALMAYNLG+PVI
Sbjct: 61 ILPYSDNGNRFNTVRVKTGLNPVERSGVLIESADVLVVLGGGVGTMIEALMAYNLGIPVI 120
Query: 121 VLTDTGYPSDKLEMLAQDGYFDHKKILRVIFTEDPDEAARLAVEIGGRKDD 171
V+T TGY SD+L LA++GYFDHK+I++VIFT+DP EAA+LA++IGG + +
Sbjct: 121 VITGTGYASDRLMELAKEGYFDHKRIVKVIFTDDPKEAAKLALKIGGERSE 171
>pir||A72302 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981597|gb|AAD36132.1|AE001765_11 (AE001765)
conserved hypothetical protein [Thermotoga maritima]
Length = 171
Score = 105 bits (260), Expect = 3e-22
Identities = 59/167 (35%), Positives = 99/167 (58%), Gaps = 2/167 (1%)
Query: 1 MIQIAIAGSSDEKPFEKAVEKAKKFARALPTN-VILLTGGRGGIMRIVSEEFRKRGGIVV 59
++ + +G ++ P + + + R L ++ GGR G+M +VS+ R+ GG VV
Sbjct: 4 VVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREAGGTVV 63
Query: 60 GILPYSDEGNEFNTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLGVPV 119
GILP + GN + ++ VKTG++ RS L+ +ADV+V +GG +GT IE L AY LG PV
Sbjct: 64 GILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPV 123
Query: 120 IVLTDTGYPSDKLEMLAQDG-YFDHKKILRVIFTEDPDEAARLAVEI 165
I+L TG +D++ + DG Y D+++I+ + +EA ++ +I
Sbjct: 124 ILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQI 170
>gb|AAK41499.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 183
Score = 102 bits (251), Expect = 3e-21
Identities = 72/165 (43%), Positives = 94/165 (56%), Gaps = 8/165 (4%)
Query: 4 IAIAGSSDEKPFEKAVEKAKKFARAL-PTNVILLTGGRGGIMRIVSEEFRKRGGIVVGIL 62
I+IA S+E E A EKA+KF R++ P N ILL GG G+MR+V +E + V IL
Sbjct: 11 ISIAAHSEESNHELA-EKARKFVRSIKPCNPILLLGGYWGLMRVVVDEALRENIKTVLIL 69
Query: 63 PYSDEGNEF--NTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLGVPVI 120
P E E I +K+G RS LV S D+LV LGGGVGT IE +MAY +G P+
Sbjct: 70 PIEKENIEIPREVICIKSGCEFRCRSVILVRSGDLLVSLGGGVGTEIEIMMAYAMGKPIY 129
Query: 121 VLTDTGYPSDKLEMLAQDGYFDHKKILRVIFTEDPDEAARLAVEI 165
LT+TG +D D Y D +KI++V + D R+A EI
Sbjct: 130 ALTNTGLSTDYFAKSFPD-YIDDRKIVKVKYF---DNVERMAEEI 170
>pir||H70312 hypothetical protein aq_134 - Aquifex aeolicus
>gi|2982880|gb|AAC06500.1| (AE000675) putative protein
[Aquifex aeolicus]
Length = 151
Score = 73.7 bits (178), Expect = 1e-12
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 13/141 (9%)
Query: 1 MIQIAIAGSS--DEKPFEKAVEKAKKFARALPTNVILLTGGRGGIMRIVSEEFRKRGGIV 58
M Q+++ GSS E+ +E A K+ A+ N++++ GGR G+M V + ++ GG+
Sbjct: 1 MRQVSVIGSSKASEEEYEFAYRLGKELAKR---NLVVVCGGRTGVMEAVCKGAKEEGGLT 57
Query: 59 VGILPYSD--EGNEFNTIRVKTGMNPVERSGALVESADVLVVLGGGVGTMIEALMAYNLG 116
+GI+P D E N + I+V TGMN R+ +V S+++++ +GG GT+ E A LG
Sbjct: 58 IGIMPSYDGHEANPYVDIKVNTGMN-WNRNPIVVASSEMVLAVGGNYGTLSEIAYALILG 116
Query: 117 VPVIVLTDTGYPSDKLEMLAQ 137
V+ GY + K+E + Q
Sbjct: 117 KYVV-----GYKTHKVEGVEQ 132
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62138598
Number of Sequences: 2977
Number of extensions: 2615017
Number of successful extensions: 7197
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7191
Number of HSP's gapped (non-prelim): 5
length of query: 171
length of database: 189,106,746
effective HSP length: 55
effective length of query: 116
effective length of database: 156,189,961
effective search space: 18118035476
effective search space used: 18118035476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)