BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2197 (PAB2197) DE:Hypothetical protein
(233 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75213 hypothetical protein PAB2197 - Pyrococcus abyssi (st... 460 e-129
pir||F71249 hypothetical protein PH0253 - Pyrococcus horikoshii ... 352 3e-96
pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii ... 71 9e-12
pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (st... 69 3e-11
>pir||F75213 hypothetical protein PAB2197 - Pyrococcus abyssi (strain Orsay)
>gi|5457666|emb|CAB49157.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 233
Score = 460 bits (1171), Expect = e-129
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MIKLVTFDVWNTLLDLNVMLDEFSFQLGKVGGLCVADVVRAVMEVREEIKRMRAKASEDP 60
MIKLVTFDVWNTLLDLNVMLDEFSFQLGKVGGLCVADVVRAVMEVREEIKRMRAKASEDP
Sbjct: 1 MIKLVTFDVWNTLLDLNVMLDEFSFQLGKVGGLCVADVVRAVMEVREEIKRMRAKASEDP 60
Query: 61 REVLTGSQRMLAERLNIDIELIKRATARAVLNVDERIVIDGAIDALKLVKEKGIKAAVLG 120
REVLTGSQRMLAERLNIDIELIKRATARAVLNVDERIVIDGAIDALKLVKEKGIKAAVLG
Sbjct: 61 REVLTGSQRMLAERLNIDIELIKRATARAVLNVDERIVIDGAIDALKLVKEKGIKAAVLG 120
Query: 121 NVMFWPGSYTRILLEKFGMLDYIDKTFFADEVLSYKPRREMFEKVLTSFNVEPKEALHVG 180
NVMFWPGSYTRILLEKFGMLDYIDKTFFADEVLSYKPRREMFEKVLTSFNVEPKEALHVG
Sbjct: 121 NVMFWPGSYTRILLEKFGMLDYIDKTFFADEVLSYKPRREMFEKVLTSFNVEPKEALHVG 180
Query: 181 DTYAEDYQGAIRVGMWAAWINPEAKEVKRIEERGFEISNVAQVGDVIEMISRI 233
DTYAEDYQGAIRVGMWAAWINPEAKEVKRIEERGFEISNVAQVGDVIEMISRI
Sbjct: 181 DTYAEDYQGAIRVGMWAAWINPEAKEVKRIEERGFEISNVAQVGDVIEMISRI 233
>pir||F71249 hypothetical protein PH0253 - Pyrococcus horikoshii
>gi|3256642|dbj|BAA29325.1| (AP000001) 235aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 235
Score = 352 bits (893), Expect = 3e-96
Identities = 162/231 (70%), Positives = 204/231 (88%)
Query: 2 IKLVTFDVWNTLLDLNVMLDEFSFQLGKVGGLCVADVVRAVMEVREEIKRMRAKASEDPR 61
+KLVTFDVWNTLLDLN+MLDEFS QL K+ GL + DV AV+EVR EIK+MRA+ASEDPR
Sbjct: 4 VKLVTFDVWNTLLDLNIMLDEFSHQLAKISGLHIKDVANAVIEVRNEIKKMRAQASEDPR 63
Query: 62 EVLTGSQRMLAERLNIDIELIKRATARAVLNVDERIVIDGAIDALKLVKEKGIKAAVLGN 121
+VLTGSQ LA +L +D+EL+KRATARA+LNVDE +V++G +AL+ VKE+G+K AV+GN
Sbjct: 64 KVLTGSQEALAGKLKVDVELVKRATARAILNVDESLVLEGTKEALQFVKERGLKTAVIGN 123
Query: 122 VMFWPGSYTRILLEKFGMLDYIDKTFFADEVLSYKPRREMFEKVLTSFNVEPKEALHVGD 181
VMFWPGSYTR+LLE+FG++++IDKTFFADEVLSYKPR+EMFEKVL SF V+P+E+LH+GD
Sbjct: 124 VMFWPGSYTRLLLERFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKPEESLHIGD 183
Query: 182 TYAEDYQGAIRVGMWAAWINPEAKEVKRIEERGFEISNVAQVGDVIEMISR 232
TYAEDYQGA +VGMWA WIN E +V+++EERGFEI ++A + DVIE+IS+
Sbjct: 184 TYAEDYQGARKVGMWAVWINQEGDKVRKLEERGFEIPSIANLKDVIELISK 234
>pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii
>gi|3258380|dbj|BAA31063.1| (AP000007) 217aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 217
Score = 71.4 bits (172), Expect = 9e-12
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 98 VIDGAIDALKLVKEKGIKAAVLGNVMFWPGSYTRILLEKFGMLDYIDKTFFADEVLSYKP 157
V G ++ LK +KE+G + LG V P Y + L+ G+ Y D D+V S KP
Sbjct: 88 VFPGVVEVLKYLKERGYR---LGIVTSGP-RYQVLKLKVSGIYRYFDVVVTRDDVGSIKP 143
Query: 158 RREMFEKVLTSFNVEPKEALHVGDTYAEDYQGAIRVGMWAAWINPEAKEVKRIEERGFEI 217
+F L + PK+A+ VGD+ +D GA VGM + WIN + + + FEI
Sbjct: 144 EPRIFLAALEKLKISPKDAVMVGDSLEQDILGAKGVGMKSVWINVGGENGYNLPD--FEI 201
Query: 218 SNVAQVGDVIE 228
S++ Q+ +VIE
Sbjct: 202 SSILQLPEVIE 212
>pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (strain Orsay)
>gi|5459129|emb|CAB50615.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 216
Score = 69.5 bits (167), Expect = 3e-11
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 90 VLNVDERI-VIDGAIDALKLVKEKGIKAAVLGNVMFWPGSYTRILLEKFGMLDYIDKTFF 148
+L+ E+I V+ G D L++++EK A V Y + L+ G+LDY D
Sbjct: 79 ILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPR-----YQILKLKVSGLLDYFDAVIT 133
Query: 149 ADEVLSYKPRREMFEKVLTSFNVEPKEALHVGDTYAEDYQGAIRVGMWAAWINPEAKEVK 208
D+V + KP ++F L VEP +A+ VGD+ +D GA +G+ WIN +
Sbjct: 134 RDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGDNGY 193
Query: 209 RIEERGFEISNVAQVGDVIE 228
+ + FEIS+++++ +V+E
Sbjct: 194 NLPD--FEISSISELLEVLE 211
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.139 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77009724
Number of Sequences: 2977
Number of extensions: 2927147
Number of successful extensions: 7889
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7886
Number of HSP's gapped (non-prelim): 4
length of query: 233
length of database: 189,106,746
effective HSP length: 56
effective length of query: 177
effective length of database: 155,591,474
effective search space: 27539690898
effective search space used: 27539690898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)