BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2198 (PAB2198) DE:Hypothetical protein
         (189 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75213 hypothetical protein PAB2198 - Pyrococcus abyssi (st...   365  e-100
pir||D71249 hypothetical protein PH0251 - Pyrococcus horikoshii ...   314  4e-85

>pir||D75213 hypothetical protein PAB2198 - Pyrococcus abyssi (strain Orsay)
           >gi|5457664|emb|CAB49155.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 189
           
 Score =  365 bits (926), Expect = e-100
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MSRAKIIAFTSVMVALSLIFEVLPLKVRTPWGMNIDLVAVPIIALYLILGFRAGLFGLAA 60
           MSRAKIIAFTSVMVALSLIFEVLPLKVRTPWGMNIDLVAVPIIALYLILGFRAGLFGLAA
Sbjct: 1   MSRAKIIAFTSVMVALSLIFEVLPLKVRTPWGMNIDLVAVPIIALYLILGFRAGLFGLAA 60

Query: 61  MTIGLFIISGPNTMGIGPVMKFFATLSVLIGLETSKAIIKKKSVTYFIVAFLVAAVIRDV 120
           MTIGLFIISGPNTMGIGPVMKFFATLSVLIGLETSKAIIKKKSVTYFIVAFLVAAVIRDV
Sbjct: 61  MTIGLFIISGPNTMGIGPVMKFFATLSVLIGLETSKAIIKKKSVTYFIVAFLVAAVIRDV 120

Query: 121 LMILLNYYFALPLFLKMMGYNITSRSDVIRIVEEMTKTPFWLAIALPNTIQTGVDIFIAA 180
           LMILLNYYFALPLFLKMMGYNITSRSDVIRIVEEMTKTPFWLAIALPNTIQTGVDIFIAA
Sbjct: 121 LMILLNYYFALPLFLKMMGYNITSRSDVIRIVEEMTKTPFWLAIALPNTIQTGVDIFIAA 180

Query: 181 PVVKRFRAE 189
           PVVKRFRAE
Sbjct: 181 PVVKRFRAE 189


>pir||D71249 hypothetical protein PH0251 - Pyrococcus horikoshii
           >gi|3256640|dbj|BAA29323.1| (AP000001) 191aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 191
           
 Score =  314 bits (797), Expect = 4e-85
 Identities = 153/189 (80%), Positives = 173/189 (90%)

Query: 1   MSRAKIIAFTSVMVALSLIFEVLPLKVRTPWGMNIDLVAVPIIALYLILGFRAGLFGLAA 60
           MS+AK++AFTS+MVALS+IFE+LPLKVRTPWGMNIDLVAVPIIALYL+LGFRAG FGL  
Sbjct: 1   MSKAKLVAFTSIMVALSIIFEILPLKVRTPWGMNIDLVAVPIIALYLLLGFRAGFFGLIT 60

Query: 61  MTIGLFIISGPNTMGIGPVMKFFATLSVLIGLETSKAIIKKKSVTYFIVAFLVAAVIRDV 120
           MTI LFIISGPNTMGIGP+MKFFATLSVLIGLE S  I  K  V Y I+AF++ ++IRDV
Sbjct: 61  MTIALFIISGPNTMGIGPIMKFFATLSVLIGLEISGRITNKFGVGYLIIAFILGSIIRDV 120

Query: 121 LMILLNYYFALPLFLKMMGYNITSRSDVIRIVEEMTKTPFWLAIALPNTIQTGVDIFIAA 180
           LMILLNYYFALPLFLKM+GY+I+SRSDVIRIVEEMTKTPFWLAIALPNTIQTGVDIF+A+
Sbjct: 121 LMILLNYYFALPLFLKMLGYSISSRSDVIRIVEEMTKTPFWLAIALPNTIQTGVDIFVAS 180

Query: 181 PVVKRFRAE 189
           PV+KR + E
Sbjct: 181 PVIKRLKVE 189


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.145    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57093474
Number of Sequences: 2977
Number of extensions: 2059672
Number of successful extensions: 9954
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9952
Number of HSP's gapped (non-prelim): 2
length of query: 189
length of database: 189,106,746
effective HSP length: 52
effective length of query: 137
effective length of database: 157,985,422
effective search space: 21644002814
effective search space used: 21644002814
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 163 (67.9 bits)