BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2200 (PAB2200) DE:Hypothetical protein
         (350 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75212 hypothetical protein PAB2200 - Pyrococcus abyssi (st...   705  0.0
pir||E71248 hypothetical protein PH0244 - Pyrococcus horikoshii ...   506  e-142

>pir||G75212 hypothetical protein PAB2200 - Pyrococcus abyssi (strain Orsay)
           >gi|5457659|emb|CAB49150.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 350
           
 Score =  705 bits (1799), Expect = 0.0
 Identities = 350/350 (100%), Positives = 350/350 (100%)

Query: 1   MRSLVASLIIFILIFQSLSTISPVDDVLKKVKLIEREVESIRGIKPSESPKFIVITRRDA 60
           MRSLVASLIIFILIFQSLSTISPVDDVLKKVKLIEREVESIRGIKPSESPKFIVITRRDA
Sbjct: 1   MRSLVASLIIFILIFQSLSTISPVDDVLKKVKLIEREVESIRGIKPSESPKFIVITRRDA 60

Query: 61  LMLFSPYVPNEEMKIKELIYKVTFILPPQETLFKVERENTANWIAATVGNKVYVIRENFL 120
           LMLFSPYVPNEEMKIKELIYKVTFILPPQETLFKVERENTANWIAATVGNKVYVIRENFL
Sbjct: 61  LMLFSPYVPNEEMKIKELIYKVTFILPPQETLFKVERENTANWIAATVGNKVYVIRENFL 120

Query: 121 KSGDIALRATAHELTHVLQRELIKKRPQEQTLDERLAFDALIEGDADLVADIFCEKNGIR 180
           KSGDIALRATAHELTHVLQRELIKKRPQEQTLDERLAFDALIEGDADLVADIFCEKNGIR
Sbjct: 121 KSGDIALRATAHELTHVLQRELIKKRPQEQTLDERLAFDALIEGDADLVADIFCEKNGIR 180

Query: 181 IIKIENISRNNLYWSLNVFPYVFGDRFVRFLYSKGGWKLVNSAYKEPPTSTKVVMFPELY 240
           IIKIENISRNNLYWSLNVFPYVFGDRFVRFLYSKGGWKLVNSAYKEPPTSTKVVMFPELY
Sbjct: 181 IIKIENISRNNLYWSLNVFPYVFGDRFVRFLYSKGGWKLVNSAYKEPPTSTKVVMFPELY 240

Query: 241 LQGWKPVQVKLNVTGVFNDTLGAYYVFLISWRINNWSEAMNIARHWMGDRIVVVNRSEVI 300
           LQGWKPVQVKLNVTGVFNDTLGAYYVFLISWRINNWSEAMNIARHWMGDRIVVVNRSEVI
Sbjct: 241 LQGWKPVQVKLNVTGVFNDTLGAYYVFLISWRINNWSEAMNIARHWMGDRIVVVNRSEVI 300

Query: 301 WKVVFSSEDSAKKFEDTLKHLAMESNFARYEIWREDKTVFMKAQVKPPSS 350
           WKVVFSSEDSAKKFEDTLKHLAMESNFARYEIWREDKTVFMKAQVKPPSS
Sbjct: 301 WKVVFSSEDSAKKFEDTLKHLAMESNFARYEIWREDKTVFMKAQVKPPSS 350


>pir||E71248 hypothetical protein PH0244 - Pyrococcus horikoshii
           >gi|3256633|dbj|BAA29316.1| (AP000001) 350aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 350
           
 Score =  506 bits (1290), Expect = e-142
 Identities = 243/344 (70%), Positives = 293/344 (84%), Gaps = 1/344 (0%)

Query: 7   SLIIFILIFQSLSTISPVDDVLKKVKLIEREVESIRGIKPSESPKFIVITRRDALMLFSP 66
           ++IIFILIFQ+LSTISP D+VLKKV LIER+VE IR I P E PKFI+ITR +A +LF+P
Sbjct: 8   TVIIFILIFQALSTISPPDEVLKKVYLIERDVERIREITPEERPKFIIITREEAKVLFTP 67

Query: 67  YVPNEEMKIKELIYKVTFILPPQETLFKVERENTANWIAATVGNKVYVIRENFLKSGDIA 126
            VP +EMK++E++YKVTFILPP +TLFK ++E+TANWIAATVGNK+Y+IRENFL SGDIA
Sbjct: 68  PVPTKEMKLREIVYKVTFILPPNKTLFKEKKESTANWIAATVGNKIYIIRENFLSSGDIA 127

Query: 127 LRATAHELTHVLQRELIKKRPQEQTLDERLAFDALIEGDADLVADIFCEKNGIRIIKIEN 186
           LRATAHELTH+LQR+L+++R  E+T DE+LAF ALIEGDADLVADIFC ++GIRIIKI N
Sbjct: 128 LRATAHELTHILQRKLVRER-NEKTFDEKLAFSALIEGDADLVADIFCREHGIRIIKITN 186

Query: 187 ISRNNLYWSLNVFPYVFGDRFVRFLYSKGGWKLVNSAYKEPPTSTKVVMFPELYLQGWKP 246
           IS+ NL+WSLNVFPYVFGD+FV +LY+KGGW+LVNSAYK+PPTSTKVVMFPELYL+ WKP
Sbjct: 187 ISKRNLFWSLNVFPYVFGDKFVYYLYNKGGWELVNSAYKDPPTSTKVVMFPELYLRRWKP 246

Query: 247 VQVKLNVTGVFNDTLGAYYVFLISWRINNWSEAMNIARHWMGDRIVVVNRSEVIWKVVFS 306
             V L V G   DTLGAYY+FLIS ++  W+EAM IAR+W GDRIV+VN + VIWK+ FS
Sbjct: 247 KNVTLQVNGELEDTLGAYYIFLISLKVYGWNEAMKIARNWEGDRIVLVNETYVIWKIEFS 306

Query: 307 SEDSAKKFEDTLKHLAMESNFARYEIWREDKTVFMKAQVKPPSS 350
           S D A+KFE  LKHL+  S+FA+Y I RE   V M+AQVKPPSS
Sbjct: 307 SRDCAEKFESILKHLSQTSSFAKYRITREGNAVIMEAQVKPPSS 350


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126545995
Number of Sequences: 2977
Number of extensions: 5119023
Number of successful extensions: 11314
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11309
Number of HSP's gapped (non-prelim): 2
length of query: 350
length of database: 189,106,746
effective HSP length: 55
effective length of query: 295
effective length of database: 156,189,961
effective search space: 46076038495
effective search space used: 46076038495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)