BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB2207 (PAB2207) DE:POTASSIUM CHANNEL, PUTATIVE
(205 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75211 probable potassium channel PAB2207 - Pyrococcus abys... 397 e-110
pir||E71247 hypothetical protein PH0236 - Pyrococcus horikoshii ... 372 e-102
pir||G69053 conserved hypothetical protein MTH1402 - Methanobact... 173 2e-42
gi|11499779 potassium channel, putative [Archaeoglobus fulgidus]... 161 6e-39
gb|AAG20247.1| (AE005100) potassium channel homolog; PchB [Halob... 141 6e-33
pir||D75211 probable potassium channel PAB2401 - Pyrococcus abys... 141 7e-33
pir||D71247 hypothetical protein PH0235 - Pyrococcus horikoshii ... 139 2e-32
pir||A72503 hypothetical protein APE1999 - Aeropyrum pernix (str... 75 8e-13
>pir||E75211 probable potassium channel PAB2207 - Pyrococcus abyssi (strain
Orsay) >gi|5457649|emb|CAB49140.1| (AJ248283) POTASSIUM
CHANNEL, PUTATIVE [Pyrococcus abyssi]
Length = 205
Score = 397 bits (1009), Expect = e-110
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ
Sbjct: 1 MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
Query: 61 LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE
Sbjct: 61 LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
Query: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR
Sbjct: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
Query: 181 GTRTSIEHLKEIARGAIRVVGNERA 205
GTRTSIEHLKEIARGAIRVVGNERA
Sbjct: 181 GTRTSIEHLKEIARGAIRVVGNERA 205
>pir||E71247 hypothetical protein PH0236 - Pyrococcus horikoshii
>gi|3256625|dbj|BAA29308.1| (AP000001) 205aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 205
Score = 372 bits (944), Expect = e-102
Identities = 185/205 (90%), Positives = 201/205 (97%)
Query: 1 MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
MEEVEEF+YEPKSVKEIFIEMKDTVELMVDLAYAS+LFGDKEIAEEVLELEERID+LNYQ
Sbjct: 1 MEEVEEFKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQ 60
Query: 61 LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
LM+H VLAARNVKEAEQVI I+Q+ANAIEDISNAAGDLAKMVLEG+ELHPVIKETI+EGE
Sbjct: 61 LMMHSVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKETILEGE 120
Query: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
EIIG+I V P+SVIVG+TLGELDLATNTGVWIIAVRRGKRWIFGP+E+FKIRAGD+LIGR
Sbjct: 121 EIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGR 180
Query: 181 GTRTSIEHLKEIARGAIRVVGNERA 205
GTRTSI+HLKEIARGAIRV+GNERA
Sbjct: 181 GTRTSIDHLKEIARGAIRVIGNERA 205
>pir||G69053 conserved hypothetical protein MTH1402 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622513|gb|AAB85879.1| (AE000902) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 198
Score = 173 bits (433), Expect = 2e-42
Identities = 83/183 (45%), Positives = 131/183 (71%)
Query: 12 KSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARN 71
KSVK+I IEMK+ ELMVDLAY+++LF ++ AEEV++LE +++ LNY++ +LAAR+
Sbjct: 3 KSVKDILIEMKNLSELMVDLAYSALLFNSRDAAEEVIKLENKVNRLNYEIKKESLLAARS 62
Query: 72 VKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPD 131
V++AE++ A++++ A E I+N+A D+A +VL+GI+ HPV K + E +EII R+ +
Sbjct: 63 VEDAEELTALLEVGEAAESIANSAKDIADLVLKGIKPHPVFKMVMEESDEIIVRVTIEEG 122
Query: 132 SVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHLKE 191
S + G++LG+L LAT TG+ +IA+RRG+ WI+GPD + + D LI +G E L
Sbjct: 123 SELAGKSLGDLLLATRTGMRVIAIRRGESWIYGPDRNTVLAEKDTLIAKGNEAGAELLFA 182
Query: 192 IAR 194
+A+
Sbjct: 183 LAK 185
>gi|11499779 potassium channel, putative [Archaeoglobus fulgidus]
>gi|7483920|pir||E69524 potassium channel homolog -
Archaeoglobus fulgidus >gi|2648332|gb|AAB89059.1|
(AE000954) potassium channel, putative [Archaeoglobus
fulgidus]
Length = 395
Score = 161 bits (403), Expect = 6e-39
Identities = 82/186 (44%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
Query: 11 PKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAAR 70
P++VK++ +E+KDT ELMVDLAY++IL+ +++IAEEVLELE R+ L Q+ + +LAAR
Sbjct: 2 PRTVKDLLVEIKDTTELMVDLAYSAILYNNEDIAEEVLELEGRVLDLLKQIRVVSILAAR 61
Query: 71 NVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIEL-HPVIKETIVEGEEIIGRIVVS 129
V+EAE+V +I+Q+ANA + IS+AA D++ +VL I L ++K + EE + ++ V
Sbjct: 62 RVEEAEKVSSILQIANAGQKISSAAADISSLVLRNIRLSDEMVKLMLYHSEETVVKLEVP 121
Query: 130 PDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHL 189
+S I G+TLGE+ L T TG+ +IA++RG WIF PD + GD+L +G ++
Sbjct: 122 ENSEIAGKTLGEVRLHTRTGMRVIAIKRGFSWIFNPDRDTMVYKGDLLFAKGDPAALPRF 181
Query: 190 KEIARG 195
E+ G
Sbjct: 182 YEVVAG 187
Score = 123 bits (305), Expect = 2e-27
Identities = 64/179 (35%), Positives = 118/179 (65%), Gaps = 2/179 (1%)
Query: 16 EIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARNVKEA 75
++ IE+K+ EL VDLAY+S+++G+ EIA EV+ LEE ID +++ + +R+ +
Sbjct: 209 DLLIEVKNLSELSVDLAYSSLIYGNDEIALEVVYLEEVIDNTKFEIEKSVLKCSRHFNDE 268
Query: 76 E--QVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPDSV 133
+ ++AI+++A E I++AA D+A+++L+ +E+ + KE + E +E++ I VS +S
Sbjct: 269 QLMPLMAIVEIAYCSELIADAARDIAQVLLDKMEIPAIFKEAMRETDEVLTLITVSEESP 328
Query: 134 IVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHLKEI 192
+ G+TLGE + +NTG+ ++A++R WI P + +I +GD+LI +GTR L ++
Sbjct: 329 LNGKTLGEARVESNTGMHVVAIKRKNEWITKPTANTRIFSGDVLIAKGTREGESELLKL 387
>gb|AAG20247.1| (AE005100) potassium channel homolog; PchB [Halobacterium sp.
NRC-1]
Length = 418
Score = 141 bits (352), Expect = 6e-33
Identities = 75/191 (39%), Positives = 119/191 (62%), Gaps = 4/191 (2%)
Query: 9 YEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLA 68
YEP S K++ +E+KDT EL+VDL+++++L G +A+EVL LE+R+D+L + + +LA
Sbjct: 7 YEPASAKDLLVELKDTAELLVDLSFSAVLHGSDNVADEVLRLEKRMDVLQLRARMTLLLA 66
Query: 69 ARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVV 128
AR+ +AE + ++ + A E +S+AAGD+AK+V E + L ++ + + E + R +
Sbjct: 67 ARSPADAESLAPVLGVVAATEKMSDAAGDIAKVVREDVGLPDAMQGALPDAAESLVRGRL 126
Query: 129 SPDSVIVGRTLGELDLATNTGVWIIAVRRGK----RWIFGPDESFKIRAGDILIGRGTRT 184
DS RTLG++DL TNTGV +IAVRRG W+ P +R D+L+ RG T
Sbjct: 127 VADSRYADRTLGDVDLETNTGVRVIAVRRGDGDAGDWLPNPGPETTLRPADVLLLRGPTT 186
Query: 185 SIEHLKEIARG 195
+E + E G
Sbjct: 187 GVEGVYETVTG 197
Score = 121 bits (300), Expect = 7e-27
Identities = 67/194 (34%), Positives = 109/194 (55%), Gaps = 21/194 (10%)
Query: 21 MKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARNVKEAEQVIA 80
MK+ EL VDLAY ++LF D +AEEV+ELE +D L + + AA ++ + +
Sbjct: 223 MKNMSELAVDLAYGAVLFDDDGLAEEVVELEAEVDALKSRFEAWTLRAATDIADPVSLRG 282
Query: 81 IIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPDSVIVGRTLG 140
++Q+A A E IS+AA ++++ VL G++ H V++E + +E++ R+ V + G TLG
Sbjct: 283 LMQIATATEVISDAAVEISEGVLRGLDTHIVVQEAVEASDEVVVRVPVGAGGELPGTTLG 342
Query: 141 ELDLATNTGVWIIAVRRG---------------------KRWIFGPDESFKIRAGDILIG 179
+ + T TG+ IIAVRRG W+ P +RAGD+L+
Sbjct: 343 DQRVKTRTGMRIIAVRRGATPDTGDVAAAGSRDGHRSPEDAWVIEPGPETTVRAGDVLLA 402
Query: 180 RGTRTSIEHLKEIA 193
+GTR+ + L+E+A
Sbjct: 403 KGTRSGAQKLRELA 416
>pir||D75211 probable potassium channel PAB2401 - Pyrococcus abyssi (strain
Orsay) >gi|5457648|emb|CAB49139.1| (AJ248283) POTASSIUM
CHANNEL, PUTATIVE [Pyrococcus abyssi]
Length = 191
Score = 141 bits (351), Expect = 7e-33
Identities = 71/184 (38%), Positives = 123/184 (66%), Gaps = 2/184 (1%)
Query: 10 EPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAA 69
E + ++ IEMK+ LM+DLA +S+++ +EIAEEV LEE++D L Y++ + AA
Sbjct: 3 ELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAA 62
Query: 70 RNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVS 129
+ + E E ++++I+MAN E IS++A ++A +VL +E HP+I++ + + +E IGR+ V
Sbjct: 63 KKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVK 122
Query: 130 PDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHL 189
S+++G++L +L L + GV IIA++RG ++I+ P S I+ GD LI G ++ L
Sbjct: 123 KGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG--AGVDRL 180
Query: 190 KEIA 193
+E+A
Sbjct: 181 RELA 184
>pir||D71247 hypothetical protein PH0235 - Pyrococcus horikoshii
>gi|3256624|dbj|BAA29307.1| (AP000001) 190aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 190
Score = 139 bits (348), Expect = 2e-32
Identities = 76/194 (39%), Positives = 127/194 (65%), Gaps = 9/194 (4%)
Query: 1 MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
M+E+EE R IEM++ LM+DLA +S+++ +EIAEEV LEE++D L +
Sbjct: 1 MKELEEIR-------SCLIEMRNLSSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTLK 53
Query: 61 LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
+ + AA+ + + E ++++I+MAN E IS++A ++A +VL +E HP+I++ + + E
Sbjct: 54 VKKLALEAAKKIDDPESMLSVIEMANINEQISDSAYEIADLVLRDVEPHPIIRKIMHDVE 113
Query: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
E IGR+ V+ S++VG++L +L L + GV IIA++RG R+I+ P + IR GD LI
Sbjct: 114 EEIGRVRVNKGSILVGKSLRQLKLPSKIGVRIIAIKRGNRYIYNPPSNEIIREGDTLIAV 173
Query: 181 GTRTSIEHLKEIAR 194
G I+ L+E+A+
Sbjct: 174 G--AGIDKLRELAK 185
>pir||A72503 hypothetical protein APE1999 - Aeropyrum pernix (strain K1)
>gi|5105697|dbj|BAA81009.1| (AP000063) 382aa long
hypothetical protein [Aeropyrum pernix]
Length = 382
Score = 74.5 bits (180), Expect = 8e-13
Identities = 56/174 (32%), Positives = 87/174 (49%), Gaps = 16/174 (9%)
Query: 20 EMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARNVKEAEQVI 79
E + +M+DL+ S+ FGD+ A E L LE+ +D + + + LA R
Sbjct: 17 EARRLTSIMIDLSIYSVAFGDRLAALETLMLEDDVDEIIREAVGLLSLAVRGPGHTGLAK 76
Query: 80 AIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPDSVIVGRTL 139
I+++A A + S+AAGDLA++VL G H + + E++ + + L
Sbjct: 77 GIVELAAAFDRASDAAGDLAQLVLRGYPPHKYVTAAAICCGEVVAALKAE-------KPL 129
Query: 140 GELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHLKEIA 193
LD+ V ++ +RRG R + P E F IR GD+LI RG S+E L E A
Sbjct: 130 DRLDI-----VDVLILRRGGRALLSP-EDFSIREGDVLIVRG---SLEALLEAA 174
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68174835
Number of Sequences: 2977
Number of extensions: 2617003
Number of successful extensions: 8109
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8092
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 189,106,746
effective HSP length: 57
effective length of query: 148
effective length of database: 154,992,987
effective search space: 22938962076
effective search space used: 22938962076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)