BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB2207 (PAB2207) DE:POTASSIUM CHANNEL, PUTATIVE
         (205 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75211 probable potassium channel PAB2207 - Pyrococcus abys...   397  e-110
pir||E71247 hypothetical protein PH0236 - Pyrococcus horikoshii ...   372  e-102
pir||G69053 conserved hypothetical protein MTH1402 - Methanobact...   173  2e-42
gi|11499779 potassium channel, putative [Archaeoglobus fulgidus]...   161  6e-39
gb|AAG20247.1| (AE005100) potassium channel homolog; PchB [Halob...   141  6e-33
pir||D75211 probable potassium channel PAB2401 - Pyrococcus abys...   141  7e-33
pir||D71247 hypothetical protein PH0235 - Pyrococcus horikoshii ...   139  2e-32
pir||A72503 hypothetical protein APE1999 - Aeropyrum pernix (str...    75  8e-13

>pir||E75211 probable potassium channel PAB2207 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457649|emb|CAB49140.1| (AJ248283) POTASSIUM
           CHANNEL, PUTATIVE [Pyrococcus abyssi]
           Length = 205
           
 Score =  397 bits (1009), Expect = e-110
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
           MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ
Sbjct: 1   MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60

Query: 61  LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
           LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE
Sbjct: 61  LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120

Query: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
           EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR
Sbjct: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180

Query: 181 GTRTSIEHLKEIARGAIRVVGNERA 205
           GTRTSIEHLKEIARGAIRVVGNERA
Sbjct: 181 GTRTSIEHLKEIARGAIRVVGNERA 205


>pir||E71247 hypothetical protein PH0236 - Pyrococcus horikoshii
           >gi|3256625|dbj|BAA29308.1| (AP000001) 205aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 205
           
 Score =  372 bits (944), Expect = e-102
 Identities = 185/205 (90%), Positives = 201/205 (97%)

Query: 1   MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
           MEEVEEF+YEPKSVKEIFIEMKDTVELMVDLAYAS+LFGDKEIAEEVLELEERID+LNYQ
Sbjct: 1   MEEVEEFKYEPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQ 60

Query: 61  LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
           LM+H VLAARNVKEAEQVI I+Q+ANAIEDISNAAGDLAKMVLEG+ELHPVIKETI+EGE
Sbjct: 61  LMMHSVLAARNVKEAEQVITILQIANAIEDISNAAGDLAKMVLEGVELHPVIKETILEGE 120

Query: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
           EIIG+I V P+SVIVG+TLGELDLATNTGVWIIAVRRGKRWIFGP+E+FKIRAGD+LIGR
Sbjct: 121 EIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGDVLIGR 180

Query: 181 GTRTSIEHLKEIARGAIRVVGNERA 205
           GTRTSI+HLKEIARGAIRV+GNERA
Sbjct: 181 GTRTSIDHLKEIARGAIRVIGNERA 205


>pir||G69053 conserved hypothetical protein MTH1402 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622513|gb|AAB85879.1| (AE000902) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 198
           
 Score =  173 bits (433), Expect = 2e-42
 Identities = 83/183 (45%), Positives = 131/183 (71%)

Query: 12  KSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARN 71
           KSVK+I IEMK+  ELMVDLAY+++LF  ++ AEEV++LE +++ LNY++    +LAAR+
Sbjct: 3   KSVKDILIEMKNLSELMVDLAYSALLFNSRDAAEEVIKLENKVNRLNYEIKKESLLAARS 62

Query: 72  VKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPD 131
           V++AE++ A++++  A E I+N+A D+A +VL+GI+ HPV K  + E +EII R+ +   
Sbjct: 63  VEDAEELTALLEVGEAAESIANSAKDIADLVLKGIKPHPVFKMVMEESDEIIVRVTIEEG 122

Query: 132 SVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHLKE 191
           S + G++LG+L LAT TG+ +IA+RRG+ WI+GPD +  +   D LI +G     E L  
Sbjct: 123 SELAGKSLGDLLLATRTGMRVIAIRRGESWIYGPDRNTVLAEKDTLIAKGNEAGAELLFA 182

Query: 192 IAR 194
           +A+
Sbjct: 183 LAK 185


>gi|11499779 potassium channel, putative [Archaeoglobus fulgidus]
           >gi|7483920|pir||E69524 potassium channel homolog -
           Archaeoglobus fulgidus >gi|2648332|gb|AAB89059.1|
           (AE000954) potassium channel, putative [Archaeoglobus
           fulgidus]
           Length = 395
           
 Score =  161 bits (403), Expect = 6e-39
 Identities = 82/186 (44%), Positives = 127/186 (68%), Gaps = 1/186 (0%)

Query: 11  PKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAAR 70
           P++VK++ +E+KDT ELMVDLAY++IL+ +++IAEEVLELE R+  L  Q+ +  +LAAR
Sbjct: 2   PRTVKDLLVEIKDTTELMVDLAYSAILYNNEDIAEEVLELEGRVLDLLKQIRVVSILAAR 61

Query: 71  NVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIEL-HPVIKETIVEGEEIIGRIVVS 129
            V+EAE+V +I+Q+ANA + IS+AA D++ +VL  I L   ++K  +   EE + ++ V 
Sbjct: 62  RVEEAEKVSSILQIANAGQKISSAAADISSLVLRNIRLSDEMVKLMLYHSEETVVKLEVP 121

Query: 130 PDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHL 189
            +S I G+TLGE+ L T TG+ +IA++RG  WIF PD    +  GD+L  +G   ++   
Sbjct: 122 ENSEIAGKTLGEVRLHTRTGMRVIAIKRGFSWIFNPDRDTMVYKGDLLFAKGDPAALPRF 181

Query: 190 KEIARG 195
            E+  G
Sbjct: 182 YEVVAG 187


 Score =  123 bits (305), Expect = 2e-27
 Identities = 64/179 (35%), Positives = 118/179 (65%), Gaps = 2/179 (1%)

Query: 16  EIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARNVKEA 75
           ++ IE+K+  EL VDLAY+S+++G+ EIA EV+ LEE ID   +++    +  +R+  + 
Sbjct: 209 DLLIEVKNLSELSVDLAYSSLIYGNDEIALEVVYLEEVIDNTKFEIEKSVLKCSRHFNDE 268

Query: 76  E--QVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPDSV 133
           +   ++AI+++A   E I++AA D+A+++L+ +E+  + KE + E +E++  I VS +S 
Sbjct: 269 QLMPLMAIVEIAYCSELIADAARDIAQVLLDKMEIPAIFKEAMRETDEVLTLITVSEESP 328

Query: 134 IVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHLKEI 192
           + G+TLGE  + +NTG+ ++A++R   WI  P  + +I +GD+LI +GTR     L ++
Sbjct: 329 LNGKTLGEARVESNTGMHVVAIKRKNEWITKPTANTRIFSGDVLIAKGTREGESELLKL 387


>gb|AAG20247.1| (AE005100) potassium channel homolog; PchB [Halobacterium sp.
           NRC-1]
           Length = 418
           
 Score =  141 bits (352), Expect = 6e-33
 Identities = 75/191 (39%), Positives = 119/191 (62%), Gaps = 4/191 (2%)

Query: 9   YEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLA 68
           YEP S K++ +E+KDT EL+VDL+++++L G   +A+EVL LE+R+D+L  +  +  +LA
Sbjct: 7   YEPASAKDLLVELKDTAELLVDLSFSAVLHGSDNVADEVLRLEKRMDVLQLRARMTLLLA 66

Query: 69  ARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVV 128
           AR+  +AE +  ++ +  A E +S+AAGD+AK+V E + L   ++  + +  E + R  +
Sbjct: 67  ARSPADAESLAPVLGVVAATEKMSDAAGDIAKVVREDVGLPDAMQGALPDAAESLVRGRL 126

Query: 129 SPDSVIVGRTLGELDLATNTGVWIIAVRRGK----RWIFGPDESFKIRAGDILIGRGTRT 184
             DS    RTLG++DL TNTGV +IAVRRG      W+  P     +R  D+L+ RG  T
Sbjct: 127 VADSRYADRTLGDVDLETNTGVRVIAVRRGDGDAGDWLPNPGPETTLRPADVLLLRGPTT 186

Query: 185 SIEHLKEIARG 195
            +E + E   G
Sbjct: 187 GVEGVYETVTG 197


 Score =  121 bits (300), Expect = 7e-27
 Identities = 67/194 (34%), Positives = 109/194 (55%), Gaps = 21/194 (10%)

Query: 21  MKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARNVKEAEQVIA 80
           MK+  EL VDLAY ++LF D  +AEEV+ELE  +D L  +     + AA ++ +   +  
Sbjct: 223 MKNMSELAVDLAYGAVLFDDDGLAEEVVELEAEVDALKSRFEAWTLRAATDIADPVSLRG 282

Query: 81  IIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPDSVIVGRTLG 140
           ++Q+A A E IS+AA ++++ VL G++ H V++E +   +E++ R+ V     + G TLG
Sbjct: 283 LMQIATATEVISDAAVEISEGVLRGLDTHIVVQEAVEASDEVVVRVPVGAGGELPGTTLG 342

Query: 141 ELDLATNTGVWIIAVRRG---------------------KRWIFGPDESFKIRAGDILIG 179
           +  + T TG+ IIAVRRG                       W+  P     +RAGD+L+ 
Sbjct: 343 DQRVKTRTGMRIIAVRRGATPDTGDVAAAGSRDGHRSPEDAWVIEPGPETTVRAGDVLLA 402

Query: 180 RGTRTSIEHLKEIA 193
           +GTR+  + L+E+A
Sbjct: 403 KGTRSGAQKLRELA 416


>pir||D75211 probable potassium channel PAB2401 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457648|emb|CAB49139.1| (AJ248283) POTASSIUM
           CHANNEL, PUTATIVE [Pyrococcus abyssi]
           Length = 191
           
 Score =  141 bits (351), Expect = 7e-33
 Identities = 71/184 (38%), Positives = 123/184 (66%), Gaps = 2/184 (1%)

Query: 10  EPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAA 69
           E + ++   IEMK+   LM+DLA +S+++  +EIAEEV  LEE++D L Y++    + AA
Sbjct: 3   ELEEIRNCLIEMKNISSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTYKVKKLALEAA 62

Query: 70  RNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVS 129
           + + E E ++++I+MAN  E IS++A ++A +VL  +E HP+I++ + + +E IGR+ V 
Sbjct: 63  KKIDEPESMLSVIEMANINEQISDSAYEIADIVLRDVEPHPIIRKIMHDVDEEIGRVKVK 122

Query: 130 PDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHL 189
             S+++G++L +L L +  GV IIA++RG ++I+ P  S  I+ GD LI  G    ++ L
Sbjct: 123 KGSILIGKSLRQLKLPSKIGVRIIAIKRGNKYIYDPQSSEVIQEGDTLIAVG--AGVDRL 180

Query: 190 KEIA 193
           +E+A
Sbjct: 181 RELA 184


>pir||D71247 hypothetical protein PH0235 - Pyrococcus horikoshii
           >gi|3256624|dbj|BAA29307.1| (AP000001) 190aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 190
           
 Score =  139 bits (348), Expect = 2e-32
 Identities = 76/194 (39%), Positives = 127/194 (65%), Gaps = 9/194 (4%)

Query: 1   MEEVEEFRYEPKSVKEIFIEMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQ 60
           M+E+EE R          IEM++   LM+DLA +S+++  +EIAEEV  LEE++D L  +
Sbjct: 1   MKELEEIR-------SCLIEMRNLSSLMIDLALSSVMYNSEEIAEEVYLLEEKMDELTLK 53

Query: 61  LMIHGVLAARNVKEAEQVIAIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGE 120
           +    + AA+ + + E ++++I+MAN  E IS++A ++A +VL  +E HP+I++ + + E
Sbjct: 54  VKKLALEAAKKIDDPESMLSVIEMANINEQISDSAYEIADLVLRDVEPHPIIRKIMHDVE 113

Query: 121 EIIGRIVVSPDSVIVGRTLGELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGR 180
           E IGR+ V+  S++VG++L +L L +  GV IIA++RG R+I+ P  +  IR GD LI  
Sbjct: 114 EEIGRVRVNKGSILVGKSLRQLKLPSKIGVRIIAIKRGNRYIYNPPSNEIIREGDTLIAV 173

Query: 181 GTRTSIEHLKEIAR 194
           G    I+ L+E+A+
Sbjct: 174 G--AGIDKLRELAK 185


>pir||A72503 hypothetical protein APE1999 - Aeropyrum pernix (strain K1)
           >gi|5105697|dbj|BAA81009.1| (AP000063) 382aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 382
           
 Score = 74.5 bits (180), Expect = 8e-13
 Identities = 56/174 (32%), Positives = 87/174 (49%), Gaps = 16/174 (9%)

Query: 20  EMKDTVELMVDLAYASILFGDKEIAEEVLELEERIDILNYQLMIHGVLAARNVKEAEQVI 79
           E +    +M+DL+  S+ FGD+  A E L LE+ +D +  + +    LA R         
Sbjct: 17  EARRLTSIMIDLSIYSVAFGDRLAALETLMLEDDVDEIIREAVGLLSLAVRGPGHTGLAK 76

Query: 80  AIIQMANAIEDISNAAGDLAKMVLEGIELHPVIKETIVEGEEIIGRIVVSPDSVIVGRTL 139
            I+++A A +  S+AAGDLA++VL G   H  +    +   E++  +          + L
Sbjct: 77  GIVELAAAFDRASDAAGDLAQLVLRGYPPHKYVTAAAICCGEVVAALKAE-------KPL 129

Query: 140 GELDLATNTGVWIIAVRRGKRWIFGPDESFKIRAGDILIGRGTRTSIEHLKEIA 193
             LD+     V ++ +RRG R +  P E F IR GD+LI RG   S+E L E A
Sbjct: 130 DRLDI-----VDVLILRRGGRALLSP-EDFSIREGDVLIVRG---SLEALLEAA 174


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68174835
Number of Sequences: 2977
Number of extensions: 2617003
Number of successful extensions: 8109
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8092
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 189,106,746
effective HSP length: 57
effective length of query: 148
effective length of database: 154,992,987
effective search space: 22938962076
effective search space used: 22938962076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)